Query 032918
Match_columns 130
No_of_seqs 67 out of 69
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 12:07:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032918.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032918hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f5tx2 d.136.1.5 (X:110-246) 13.7 20 0.0014 25.1 0.1 20 61-80 26-45 (137)
2 d1bboa1 g.37.1.1 (A:1-28) Enha 8.7 84 0.0061 16.5 1.6 12 90-101 16-27 (28)
3 d2hkua2 a.121.1.1 (A:88-208) P 7.6 28 0.002 24.0 -0.9 8 2-9 62-69 (121)
4 d2gqba1 a.282.1.1 (A:1-130) Hy 7.2 59 0.0043 22.5 0.7 10 2-11 62-71 (130)
5 d1l7va_ f.22.1.1 (A:) ABC tran 7.0 1.6E+02 0.012 21.8 3.2 15 78-92 305-319 (324)
6 d2jb0b1 d.4.1.1 (B:449-572) DN 6.1 83 0.0061 21.4 1.0 13 65-77 28-40 (124)
7 d2gykb1 d.4.1.1 (B:4-133) DNas 5.7 91 0.0066 21.4 1.0 15 63-77 29-43 (130)
8 d1neia_ d.253.1.1 (A:) Hypothe 5.1 80 0.0059 19.1 0.3 26 8-33 23-48 (60)
9 d1v54k_ f.23.5.1 (K:) Mitochon 4.8 2.7E+02 0.02 16.0 2.7 16 78-93 15-30 (49)
10 d2dk5a1 a.4.5.85 (A:8-85) DNA- 4.4 1.7E+02 0.012 18.0 1.6 12 89-100 16-27 (78)
No 1
>d2f5tx2 d.136.1.5 (X:110-246) Transcriptional regulator TrmB {Thermococcus litoralis [TaxId: 2265]}
Probab=13.72 E-value=20 Score=25.14 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=17.2
Q ss_pred HhhcChhHHHhhhhcchhHH
Q 032918 61 LFVITPAWLANGLREGIAAG 80 (130)
Q Consensus 61 LivvaP~~~~~~~R~~~~G~ 80 (130)
.+||+|+.+-.++|+++.++
T Consensus 26 vIvvtP~eFF~~Ire~L~~~ 45 (137)
T d2f5tx2 26 VIVVTPSEFFETIREDLIKT 45 (137)
T ss_dssp EEEEECGGGHHHHHHHHHHH
T ss_pred EEEEchHHHHHHHHHHHHHH
Confidence 36899999999999998775
No 2
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.74 E-value=84 Score=16.50 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=8.9
Q ss_pred HHHHHHHhcCCc
Q 032918 90 VIITEIRGIGGF 101 (130)
Q Consensus 90 Ll~qHi~~~GG~ 101 (130)
+++.|||..-|-
T Consensus 16 vL~KHIRsHT~~ 27 (28)
T d1bboa1 16 MLKKHIRTHTDV 27 (28)
T ss_dssp HHHHHHHHTSSC
T ss_pred HHHHHHHHhcCC
Confidence 678999876553
No 3
>d2hkua2 a.121.1.1 (A:88-208) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=7.56 E-value=28 Score=24.00 Aligned_cols=8 Identities=38% Similarity=0.418 Sum_probs=5.1
Q ss_pred Cccccccc
Q 032918 2 NRTGRRSH 9 (130)
Q Consensus 2 drtnwkT~ 9 (130)
+|+||++.
T Consensus 62 ~R~GW~~r 69 (121)
T d2hkua2 62 MRTGWQLR 69 (121)
T ss_dssp HHTTCCCS
T ss_pred HHhccccc
Confidence 56777654
No 4
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=7.23 E-value=59 Score=22.51 Aligned_cols=10 Identities=10% Similarity=0.232 Sum_probs=7.1
Q ss_pred Cccccccchh
Q 032918 2 NRTGRRSHMQ 11 (130)
Q Consensus 2 drtnwkT~i~ 11 (130)
++-||||.|.
T Consensus 62 qkLnWRtSIV 71 (130)
T d2gqba1 62 EKLEWRTSIV 71 (130)
T ss_dssp SCCCTTTCHH
T ss_pred CCCccHHHHH
Confidence 4578888774
No 5
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=7.01 E-value=1.6e+02 Score=21.78 Aligned_cols=15 Identities=13% Similarity=-0.037 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHH
Q 032918 78 AAGVYCLIIGVLVII 92 (130)
Q Consensus 78 ~G~vi~L~I~~YLl~ 92 (130)
+|++.+++=+-|+++
T Consensus 305 vGvitaliG~P~fi~ 319 (324)
T d1l7va_ 305 IGVVTATLGAPVFIW 319 (324)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555544
No 6
>d2jb0b1 d.4.1.1 (B:449-572) DNase domain of colicin E7 {Escherichia coli [TaxId: 562]}
Probab=6.11 E-value=83 Score=21.41 Aligned_cols=13 Identities=38% Similarity=0.545 Sum_probs=11.0
Q ss_pred ChhHHHhhhhcch
Q 032918 65 TPAWLANGLREGI 77 (130)
Q Consensus 65 aP~~~~~~~R~~~ 77 (130)
-|++++|.+||.-
T Consensus 28 IP~qIadkLrGr~ 40 (124)
T d2jb0b1 28 VPDRIANKLRDKE 40 (124)
T ss_dssp CBHHHHHHHTTCE
T ss_pred CCHHHHHHhcCCc
Confidence 4899999999864
No 7
>d2gykb1 d.4.1.1 (B:4-133) DNase domain of colicin E9 {Escherichia coli [TaxId: 562]}
Probab=5.70 E-value=91 Score=21.37 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=12.3
Q ss_pred hcChhHHHhhhhcch
Q 032918 63 VITPAWLANGLREGI 77 (130)
Q Consensus 63 vvaP~~~~~~~R~~~ 77 (130)
+.-|++++|.+||.-
T Consensus 29 apIP~qIadkLrGr~ 43 (130)
T d2gykb1 29 APIPDRIADKLRDKE 43 (130)
T ss_dssp EECBHHHHHHHTTCE
T ss_pred CcCCHHHHHHhcCCc
Confidence 445999999999974
No 8
>d1neia_ d.253.1.1 (A:) Hypothetical protein YoaG {Escherichia coli [TaxId: 562]}
Probab=5.11 E-value=80 Score=19.15 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=22.8
Q ss_pred cchhhHHHHHHHHhhchhhhHhHhcc
Q 032918 8 SHMQTNLLVLYLFTSFPTVLFKILRG 33 (130)
Q Consensus 8 T~i~tslLVPyi~lslP~~if~~~rG 33 (130)
+..+-.|++|-++-..-..+.|..||
T Consensus 23 ~~~~~~L~~p~~aae~vKdLvNiVRg 48 (60)
T d1neia_ 23 TETPMTLLVPEVAAEVIKDLVNTVRS 48 (60)
T ss_dssp CCCSGGGTCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHhcChHHHHHHHHHHHHHHhc
Confidence 45667899999999999999999998
No 9
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.84 E-value=2.7e+02 Score=15.99 Aligned_cols=16 Identities=13% Similarity=0.467 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHH
Q 032918 78 AAGVYCLIIGVLVIIT 93 (130)
Q Consensus 78 ~G~vi~L~I~~YLl~q 93 (130)
.|+.+|+++=.|.+-|
T Consensus 15 ~Ga~fc~avW~yv~TQ 30 (49)
T d1v54k_ 15 SGATFCVAVWVYMATQ 30 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhheeee
Confidence 6899999999998766
No 10
>d2dk5a1 a.4.5.85 (A:8-85) DNA-directed RNA polymerase III subunit RPC6, RPO3F {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.38 E-value=1.7e+02 Score=17.97 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=9.9
Q ss_pred HHHHHHHHhcCC
Q 032918 89 LVIITEIRGIGG 100 (130)
Q Consensus 89 YLl~qHi~~~GG 100 (130)
++++++|+.+|.
T Consensus 16 ~lVY~~I~~ag~ 27 (78)
T d2dk5a1 16 KLVYQIIEDAGN 27 (78)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHccc
Confidence 578899999975
Done!