Query 032925
Match_columns 130
No_of_seqs 131 out of 359
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 07:39:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3389 NADH:ubiquinone oxidor 100.0 2.3E-45 5E-50 284.0 6.5 107 22-129 42-152 (178)
2 PF04800 ETC_C1_NDUFA4: ETC co 100.0 4.1E-42 9E-47 249.2 7.4 75 52-129 1-76 (101)
3 PF09954 DUF2188: Uncharacteri 86.5 0.58 1.3E-05 30.2 2.1 16 105-120 22-37 (62)
4 PHA02552 4 head completion pro 82.5 1.3 2.8E-05 34.5 2.8 66 52-128 60-137 (151)
5 PF08727 P3A: Poliovirus 3A pr 79.6 1.2 2.6E-05 29.8 1.5 14 112-125 30-43 (57)
6 PF05573 NosL: NosL; InterPro 79.0 2.5 5.5E-05 31.8 3.3 50 72-122 77-135 (149)
7 PRK05370 argininosuccinate syn 75.2 1.7 3.7E-05 39.1 1.7 21 107-127 165-185 (447)
8 PF08722 Tn7_Tnp_TnsA_N: TnsA 72.2 4.5 9.8E-05 27.4 2.9 18 111-128 69-86 (88)
9 PF03462 PCRF: PCRF domain; I 63.3 6.4 0.00014 28.5 2.3 15 115-129 73-87 (115)
10 PF11360 DUF3110: Protein of u 62.3 6.7 0.00015 27.7 2.2 14 105-118 26-39 (86)
11 PF08803 ydhR: Putative mono-o 61.6 5 0.00011 29.3 1.5 29 91-121 38-66 (97)
12 KOG2854 Possible pfkB family c 61.3 4.7 0.0001 35.3 1.5 22 104-125 215-236 (343)
13 PF07045 DUF1330: Protein of u 59.1 8.8 0.00019 24.8 2.2 14 105-118 43-56 (65)
14 PF10075 PCI_Csn8: COP9 signal 58.5 6.6 0.00014 28.8 1.7 20 106-126 107-126 (143)
15 PF06194 Phage_Orf51: Phage Co 57.1 9.2 0.0002 27.1 2.1 22 105-126 51-72 (80)
16 PRK04527 argininosuccinate syn 54.3 8.5 0.00019 34.1 1.9 21 107-127 150-170 (400)
17 PF11360 DUF3110: Protein of u 54.1 17 0.00036 25.7 3.0 49 72-128 23-74 (86)
18 KOG4748 Subunit of Golgi manno 52.9 11 0.00024 33.3 2.4 19 110-128 127-145 (364)
19 PF12518 DUF3721: Protein of u 52.1 14 0.0003 22.3 2.0 16 108-123 1-16 (34)
20 PRK11118 putative monooxygenas 51.4 18 0.00038 26.7 2.9 29 91-121 41-69 (100)
21 PF01071 GARS_A: Phosphoribosy 49.0 23 0.0005 28.4 3.5 24 105-128 20-44 (194)
22 PF01693 Cauli_VI: Caulimoviru 48.3 18 0.00039 21.9 2.2 13 105-117 32-44 (44)
23 PLN00139 hypothetical protein; 47.5 17 0.00038 30.8 2.7 22 106-127 195-216 (320)
24 PRK05773 3,4-dihydroxy-2-butan 46.2 18 0.00039 29.7 2.5 17 109-125 191-207 (219)
25 COG0108 RibB 3,4-dihydroxy-2-b 45.5 16 0.00036 29.8 2.1 18 109-126 172-189 (203)
26 PF13031 DUF3892: Protein of u 44.9 22 0.00048 24.1 2.5 22 107-128 29-50 (85)
27 smart00156 PP2Ac Protein phosp 44.5 41 0.00088 27.7 4.3 39 83-128 176-217 (271)
28 PF03108 DBD_Tnp_Mut: MuDR fam 41.4 51 0.0011 21.0 3.6 24 105-128 7-34 (67)
29 COG5470 Uncharacterized conser 40.8 25 0.00053 25.8 2.2 20 95-117 50-69 (96)
30 PF07862 Nif11: Nitrogen fixat 40.4 26 0.00057 21.3 2.1 20 108-127 26-45 (49)
31 PF03793 PASTA: PASTA domain; 39.6 40 0.00086 20.9 2.9 20 109-128 9-28 (63)
32 KOG2741 Dimeric dihydrodiol de 39.2 19 0.0004 31.8 1.6 20 105-124 37-56 (351)
33 smart00461 WH1 WASP homology r 39.2 26 0.00055 25.0 2.1 17 105-121 86-102 (106)
34 PRK12863 YciI-like protein; Re 39.1 55 0.0012 22.4 3.7 26 105-130 55-87 (94)
35 PF05637 Glyco_transf_34: gala 38.9 21 0.00045 28.8 1.8 17 112-128 31-47 (239)
36 PF00568 WH1: WH1 domain; Int 38.6 28 0.00061 24.7 2.3 29 86-120 78-106 (111)
37 PF14259 RRM_6: RNA recognitio 37.9 34 0.00074 21.1 2.4 19 104-122 42-60 (70)
38 COG4314 NosL Predicted lipopro 37.8 24 0.00052 28.3 1.9 20 105-124 130-149 (176)
39 PF09383 NIL: NIL domain; Int 37.6 36 0.00079 22.2 2.5 24 105-128 49-76 (76)
40 PRK12865 YciI-like protein; Re 37.5 54 0.0012 22.7 3.6 26 105-130 56-88 (97)
41 PF02786 CPSase_L_D2: Carbamoy 37.3 41 0.00088 26.7 3.2 22 108-129 24-45 (211)
42 PRK00823 phhB pterin-4-alpha-c 37.0 33 0.00072 24.0 2.4 33 86-120 16-48 (97)
43 cd00837 EVH1 EVH1 (Enabled, Va 36.9 31 0.00068 24.4 2.3 16 105-120 84-99 (104)
44 PF00076 RRM_1: RNA recognitio 36.8 44 0.00095 20.0 2.7 19 105-123 43-62 (70)
45 cd01207 Ena-Vasp Enabled-VASP- 36.7 26 0.00057 25.9 1.9 44 71-120 54-102 (111)
46 PRK12864 YciI-like protein; Re 36.3 62 0.0013 22.2 3.6 26 105-130 53-85 (89)
47 TIGR01465 cobM_cbiF precorrin- 35.9 48 0.001 25.6 3.4 32 89-128 74-105 (229)
48 COG0137 ArgG Argininosuccinate 35.3 24 0.00052 31.6 1.8 21 107-128 151-171 (403)
49 COG3341 Predicted double-stran 35.1 22 0.00047 29.6 1.4 14 107-120 39-52 (225)
50 PF12745 HGTP_anticodon2: Anti 35.0 46 0.001 27.8 3.3 22 108-129 43-64 (273)
51 PRK13864 type IV secretion sys 34.9 55 0.0012 27.4 3.7 23 105-127 69-94 (245)
52 cd00913 PCD_DCoH_subfamily_a P 34.9 49 0.0011 22.1 2.9 29 90-120 1-29 (76)
53 COG0007 CysG Uroporphyrinogen- 34.8 49 0.0011 27.6 3.4 35 82-128 81-115 (244)
54 PRK09437 bcp thioredoxin-depen 34.2 48 0.001 23.8 2.9 25 104-128 68-92 (154)
55 PF02844 GARS_N: Phosphoribosy 33.5 43 0.00093 24.3 2.5 24 105-128 45-68 (100)
56 PF10566 Glyco_hydro_97: Glyco 33.2 43 0.00092 28.2 2.8 24 105-128 28-51 (273)
57 TIGR00506 ribB 3,4-dihydroxy-2 33.0 39 0.00084 27.3 2.5 18 108-125 172-189 (199)
58 PRK12354 carbamate kinase; Rev 32.8 42 0.00092 28.7 2.8 21 107-127 125-145 (307)
59 cd00914 PCD_DCoH_subfamily_b P 32.5 44 0.00096 22.3 2.4 29 90-120 1-29 (76)
60 PLN00200 argininosuccinate syn 32.3 31 0.00068 30.5 2.0 19 107-125 152-170 (404)
61 PF14657 Integrase_AP2: AP2-li 32.2 38 0.00083 20.5 1.8 13 108-120 24-36 (46)
62 PRK01792 ribB 3,4-dihydroxy-2- 32.0 41 0.00089 27.6 2.5 18 108-125 182-199 (214)
63 PRK12866 YciI-like protein; Re 31.7 80 0.0017 22.2 3.7 26 105-130 53-85 (97)
64 KOG0097 GTPase Rab14, small G 31.7 37 0.0008 27.3 2.1 42 85-126 99-151 (215)
65 PF08759 DUF1792: Domain of un 31.6 26 0.00057 29.0 1.3 26 40-65 125-153 (225)
66 KOG0369 Pyruvate carboxylase [ 31.2 46 0.00099 32.7 3.0 22 108-129 170-191 (1176)
67 PF00926 DHBP_synthase: 3,4-di 31.1 47 0.001 26.6 2.6 19 108-126 167-185 (194)
68 cd07419 MPP_Bsu1_C Arabidopsis 30.9 1E+02 0.0022 25.9 4.8 23 107-129 238-260 (311)
69 PF03682 UPF0158: Uncharacteri 30.7 36 0.00078 26.3 1.9 17 111-127 127-143 (163)
70 PF01329 Pterin_4a: Pterin 4 a 30.5 43 0.00094 23.3 2.1 31 86-120 15-46 (95)
71 PF13911 AhpC-TSA_2: AhpC/TSA 30.1 58 0.0013 22.4 2.7 24 105-128 18-41 (115)
72 PRK12454 carbamate kinase-like 29.6 49 0.0011 28.4 2.7 20 107-126 134-153 (313)
73 PF12123 Amidase02_C: N-acetyl 29.5 66 0.0014 20.3 2.6 18 110-127 28-45 (45)
74 PF03795 YCII: YCII-related do 29.0 36 0.00078 22.6 1.5 17 104-120 61-77 (95)
75 cd01206 Homer Homer type EVH1 29.0 63 0.0014 24.3 2.8 23 96-120 79-102 (111)
76 PRK00910 ribB 3,4-dihydroxy-2- 28.9 50 0.0011 27.1 2.5 18 108-125 183-200 (218)
77 PTZ00056 glutathione peroxidas 28.5 54 0.0012 25.5 2.5 21 108-128 88-108 (199)
78 PF05406 WGR: WGR domain; Int 28.4 50 0.0011 22.0 2.1 45 71-120 19-64 (81)
79 PF02244 Propep_M14: Carboxype 28.2 1E+02 0.0022 19.7 3.5 25 105-129 39-63 (74)
80 PRK00014 ribB 3,4-dihydroxy-2- 27.9 53 0.0012 27.3 2.5 18 108-125 187-204 (230)
81 COG0216 PrfA Protein chain rel 27.7 46 0.00099 29.5 2.2 14 115-128 139-152 (363)
82 KOG0098 GTPase Rab2, small G p 27.7 48 0.0011 27.4 2.2 106 21-126 21-146 (216)
83 cd07415 MPP_PP2A_PP4_PP6 PP2A, 27.6 1.2E+02 0.0025 25.4 4.5 24 105-129 209-232 (285)
84 cd00860 ThrRS_anticodon ThrRS 27.5 93 0.002 19.9 3.2 22 108-129 37-58 (91)
85 PF14791 DNA_pol_B_thumb: DNA 27.0 7.2 0.00016 25.9 -2.2 12 88-99 2-13 (64)
86 cd07202 cPLA2_Grp-IVC Group IV 26.9 30 0.00066 31.2 1.0 18 108-125 321-338 (430)
87 TIGR00746 arcC carbamate kinas 26.3 60 0.0013 27.6 2.6 20 107-126 131-150 (310)
88 PF14542 Acetyltransf_CG: GCN5 25.8 67 0.0015 21.5 2.3 16 111-126 44-59 (78)
89 PF09691 PulS_OutS: Bacterial 25.7 45 0.00097 24.6 1.5 14 112-125 53-66 (109)
90 PF11823 DUF3343: Protein of u 25.5 96 0.0021 20.3 3.0 22 105-126 44-67 (73)
91 cd03017 PRX_BCP Peroxiredoxin 25.3 89 0.0019 21.6 3.0 24 105-128 62-85 (140)
92 cd07420 MPP_RdgC Drosophila me 25.2 1.3E+02 0.0029 25.7 4.5 24 105-129 248-271 (321)
93 KOG1706 Argininosuccinate synt 24.7 38 0.00082 30.2 1.1 21 107-127 154-174 (412)
94 cd03421 SirA_like_N SirA_like_ 24.6 99 0.0022 19.6 2.9 19 110-128 37-55 (67)
95 cd06576 PASTA_Pbp2x-like_1 PAS 24.4 1.2E+02 0.0026 17.4 3.1 20 109-128 8-27 (55)
96 COG2154 Pterin-4a-carbinolamin 24.2 77 0.0017 23.2 2.5 32 85-120 15-48 (101)
97 KOG0081 GTPase Rab27, small G 24.0 57 0.0012 26.7 2.0 20 107-126 140-159 (219)
98 PF02177 APP_N: Amyloid A4 N-t 23.5 63 0.0014 23.8 2.0 23 105-127 31-53 (102)
99 cd03012 TlpA_like_DipZ_like Tl 23.5 75 0.0016 22.1 2.3 20 109-128 71-90 (126)
100 TIGR03728 glyco_access_1 glyco 23.5 41 0.00088 28.6 1.1 26 40-65 143-171 (265)
101 PF00764 Arginosuc_synth: Argi 23.4 44 0.00096 29.6 1.3 17 111-127 147-163 (388)
102 cd07417 MPP_PP5_C PP5, C-termi 23.3 1.7E+02 0.0036 24.9 4.7 23 105-128 228-250 (316)
103 cd05564 PTS_IIB_chitobiose_lic 23.0 1.1E+02 0.0023 21.2 3.0 19 111-129 16-34 (96)
104 PF00331 Glyco_hydro_10: Glyco 23.0 57 0.0012 27.3 1.9 22 105-126 55-76 (320)
105 TIGR03798 ocin_TIGR03798 bacte 22.7 77 0.0017 20.5 2.1 21 107-127 23-43 (64)
106 PRK12686 carbamate kinase; Rev 21.9 67 0.0014 27.6 2.1 20 107-126 132-151 (312)
107 TIGR01004 PulS_OutS lipoprotei 21.8 69 0.0015 24.6 1.9 12 113-124 70-81 (128)
108 PF10009 DUF2252: Uncharacteri 21.6 52 0.0011 28.7 1.4 42 82-123 287-335 (385)
109 cd00488 PCD_DCoH PCD_DCoH: The 21.6 1.1E+02 0.0023 20.3 2.7 16 105-120 13-28 (75)
110 TIGR02540 gpx7 putative glutat 21.4 68 0.0015 23.2 1.8 20 108-127 71-91 (153)
111 PTZ00480 serine/threonine-prot 21.2 1.7E+02 0.0036 25.1 4.4 41 82-129 206-249 (320)
112 COG1979 Uncharacterized oxidor 21.2 68 0.0015 28.6 2.0 23 107-129 70-92 (384)
113 cd06575 PASTA_Pbp2x-like_2 PAS 21.2 1.5E+02 0.0033 16.7 3.0 20 109-128 8-27 (54)
114 PF04895 DUF651: Archaeal prot 21.1 70 0.0015 23.7 1.8 17 105-121 67-83 (110)
115 PRK13820 argininosuccinate syn 21.1 65 0.0014 28.4 1.9 18 110-127 148-165 (394)
116 PRK00509 argininosuccinate syn 21.0 72 0.0016 28.2 2.2 20 107-126 148-167 (399)
117 smart00481 POLIIIAc DNA polyme 21.0 1.4E+02 0.003 18.7 3.0 19 109-127 15-33 (67)
118 PF01910 DUF77: Domain of unkn 20.9 94 0.002 21.8 2.4 18 111-128 19-36 (92)
119 PF14555 UBA_4: UBA-like domai 20.8 96 0.0021 18.4 2.1 17 110-126 14-30 (43)
120 cd03593 CLECT_NK_receptors_lik 20.8 71 0.0015 21.4 1.7 17 109-125 20-36 (116)
121 PF00590 TP_methylase: Tetrapy 20.6 1.4E+02 0.003 22.3 3.4 32 89-128 79-112 (210)
122 cd00859 HisRS_anticodon HisRS 20.6 1.6E+02 0.0035 18.2 3.3 19 110-128 39-57 (91)
123 TIGR02432 lysidine_TilS_N tRNA 20.6 1.1E+02 0.0024 22.7 2.9 19 110-128 46-64 (189)
124 PTZ00175 diphthine synthase; P 20.6 1.4E+02 0.003 24.8 3.6 30 91-128 81-110 (270)
125 cd07416 MPP_PP2B PP2B, metallo 20.5 1.9E+02 0.0041 24.3 4.5 24 105-129 217-240 (305)
126 PRK06746 peptide chain release 20.4 89 0.0019 27.2 2.5 15 115-129 113-127 (326)
127 COG5079 SAC3 Nuclear protein e 20.3 55 0.0012 30.9 1.3 23 105-127 356-378 (646)
128 cd04235 AAK_CK AAK_CK: Carbama 20.2 97 0.0021 26.5 2.7 21 107-127 130-150 (308)
129 COG0656 ARA1 Aldo/keto reducta 20.1 80 0.0017 26.8 2.2 31 95-126 157-187 (280)
No 1
>KOG3389 consensus NADH:ubiquinone oxidoreductase, NDUFS4/18 kDa subunit [Energy production and conversion]
Probab=100.00 E-value=2.3e-45 Score=283.99 Aligned_cols=107 Identities=61% Similarity=1.076 Sum_probs=100.6
Q ss_pred ccccccccc-ccc--ccccccccccCCCcccc-cceEEEecCCCCCCCCCCCCCCCcEEEecCCCCccCCCcCccCCCCc
Q 032925 22 FSRAFSADA-LVE--VKPGEIGMVSGIPEEHL-RRRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDP 97 (130)
Q Consensus 22 ~~r~fs~d~-~~~--~~~~e~~~vSG~P~e~~-~r~vrIY~Pak~amQSG~~~t~~W~LeF~~~~~w~nPLMGWtsS~D~ 97 (130)
+.|+|+.|+ .|+ .+-+||+-|+|+|+||+ .|+||||.|+|++||||.+|+++|+|||+.+.+||||||||+|++||
T Consensus 42 la~~~~~Dak~ve~d~kld~i~~v~GvPeeH~~sRkvrIf~PAR~~tQSg~gntkkWkiefd~r~rWENPLMGWtsTaDP 121 (178)
T KOG3389|consen 42 LARPFATDAKVVESDYKLDEIGKVSGVPEEHLDSRKVRIFSPARTATQSGSGNTKKWKIEFDSRLRWENPLMGWTSTADP 121 (178)
T ss_pred ccccccccceeEeehhhhcccccccCCChHHhcceeEEEecchhhhhhcccCCccceEEEecchhhccCccccccccCCc
Confidence 588999998 454 56678999999999999 69999999999999999999999999999999999999999999999
Q ss_pred cCCcCCceeeeCCHHHHHHHHHHcCCeEEEEE
Q 032925 98 YANVGDAGLSFDSKEAAREFAERHGWEYVVSV 129 (130)
Q Consensus 98 ~sqv~~~~L~F~SkE~Aiafaek~Gw~Y~V~~ 129 (130)
++||+ +.|.|+|+|||+.|||||||+|.|++
T Consensus 122 lsNvg-m~L~F~tkEdA~sFaEkngW~ydvee 152 (178)
T KOG3389|consen 122 LSNVG-MALAFDTKEDAKSFAEKNGWDYDVEE 152 (178)
T ss_pred ccccc-eeeeeccHHHHHHHHHHcCCcccccC
Confidence 99995 89999999999999999999999974
No 2
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=100.00 E-value=4.1e-42 Score=249.19 Aligned_cols=75 Identities=51% Similarity=1.022 Sum_probs=57.7
Q ss_pred ceEEEecCCCCCCCCCCCCCCCcEEEecCCCCccCCCcCccCCCCccCC-cCCceeeeCCHHHHHHHHHHcCCeEEEEE
Q 032925 52 RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYAN-VGDAGLSFDSKEAAREFAERHGWEYVVSV 129 (130)
Q Consensus 52 r~vrIY~Pak~amQSG~~~t~~W~LeF~~~~~w~nPLMGWtsS~D~~sq-v~~~~L~F~SkE~Aiafaek~Gw~Y~V~~ 129 (130)
|+||||+|+|+|||||.+++++|+|||+..++|+|||||||||+||++| | +|+|+|+||||+|||+|||+|+|+.
T Consensus 1 r~arIy~pak~amQSG~~~t~~W~lefe~~~~~~~PLMGWtss~D~~~q~v---~l~F~skE~Ai~yaer~G~~Y~V~~ 76 (101)
T PF04800_consen 1 RKARIYQPAKNAMQSGTANTKKWVLEFETRARWENPLMGWTSSGDPLSQSV---RLKFDSKEDAIAYAERNGWDYEVEE 76 (101)
T ss_dssp -EEEEE--SS--STTTT-SS--EEEEEEESSS---TTT-SSSS--SEEE-C---EEEESSHHHHHHHHHHCT-EEEEE-
T ss_pred CeEEEeCCCCCCCCCCCCCCCCEEEeecCcCCcCCCccCCCCCCChhhCee---EeeeCCHHHHHHHHHHcCCeEEEeC
Confidence 6899999999999999999999999999889999999999999999998 8 9999999999999999999999975
No 3
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=86.45 E-value=0.58 Score=30.22 Aligned_cols=16 Identities=38% Similarity=0.432 Sum_probs=13.9
Q ss_pred eeeeCCHHHHHHHHHH
Q 032925 105 GLSFDSKEAAREFAER 120 (130)
Q Consensus 105 ~L~F~SkE~Aiafaek 120 (130)
...|+|+++||++|++
T Consensus 22 ~~~~~Tk~eAi~~Ar~ 37 (62)
T PF09954_consen 22 SKTFDTKAEAIEAARE 37 (62)
T ss_pred ccccCcHHHHHHHHHH
Confidence 5689999999998875
No 4
>PHA02552 4 head completion protein; Provisional
Probab=82.50 E-value=1.3 Score=34.45 Aligned_cols=66 Identities=18% Similarity=0.266 Sum_probs=40.0
Q ss_pred ceEEEecCCCCC-CCCCCCCCCCcEEEecCCCCccCCCcCccCCCCccCCcCCceeeeC-----------CHHHHHHHHH
Q 032925 52 RRVVIYTPARTA-TQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFD-----------SKEAAREFAE 119 (130)
Q Consensus 52 r~vrIY~Pak~a-mQSG~~~t~~W~LeF~~~~~w~nPLMGWtsS~D~~sqv~~~~L~F~-----------SkE~Aiafae 119 (130)
-++|.|-|+=-+ +..| ....+|.-+..+..+|.+- ..-|+.+ ...|. --++|.+||+
T Consensus 60 Gk~r~Y~PDFLV~~~dG----~~~lvEVKp~~~~~~p~~~--~~~~~~~-----~~~~~~~~~~w~~~~~K~~Aa~~~a~ 128 (151)
T PHA02552 60 GKRRRYFMDFYVKVDNG----QKFLIEVKPKKETQPPKKP--AKMTTAA-----KKRFINEVYTWSVNTDKWKAARALCE 128 (151)
T ss_pred CCeeeEcCcEEEEEeCC----CEEEEEEccHHHccCcccc--cccchhh-----hhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 567788887433 2233 4678888777666666442 1111110 11222 2478999999
Q ss_pred HcCCeEEEE
Q 032925 120 RHGWEYVVS 128 (130)
Q Consensus 120 k~Gw~Y~V~ 128 (130)
++||.|.|.
T Consensus 129 ~~Gw~F~ii 137 (151)
T PHA02552 129 KKGWKFKII 137 (151)
T ss_pred HcCCEEEEE
Confidence 999999985
No 5
>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses. It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.
Probab=79.60 E-value=1.2 Score=29.81 Aligned_cols=14 Identities=36% Similarity=0.859 Sum_probs=10.2
Q ss_pred HHHHHHHHHcCCeE
Q 032925 112 EAAREFAERHGWEY 125 (130)
Q Consensus 112 E~Aiafaek~Gw~Y 125 (130)
++-++|||++||-.
T Consensus 30 ~eV~~YC~~~GWIi 43 (57)
T PF08727_consen 30 PEVREYCEEQGWII 43 (57)
T ss_dssp HHHHHHHHHHT--T
T ss_pred HHHHHHHHHCCccc
Confidence 55899999999953
No 6
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=79.05 E-value=2.5 Score=31.78 Aligned_cols=50 Identities=28% Similarity=0.585 Sum_probs=27.1
Q ss_pred CCcEEEecCCCCccCCCc-CccCCC--------CccCCcCCceeeeCCHHHHHHHHHHcC
Q 032925 72 GRWKINFMSTQKWENPLM-GWTSTG--------DPYANVGDAGLSFDSKEAAREFAERHG 122 (130)
Q Consensus 72 ~~W~LeF~~~~~w~nPLM-GWtsS~--------D~~sqv~~~~L~F~SkE~Aiafaek~G 122 (130)
..|+-+|.. ..|.+|-- -|.... |-..-.+.-.+-|.++++|.+|+++||
T Consensus 77 ~~~V~D~~~-~~~~~p~~~~~Ida~~A~yV~gs~~~~pMg~~~~aF~~~~~A~~F~~~~G 135 (149)
T PF05573_consen 77 AIYVTDYST-TDWDQPGDGEWIDAKKAYYVVGSDVRGPMGPDLIAFASKEDAEAFAKEHG 135 (149)
T ss_dssp EEEEEES-T-S-TT-S---EEEEGGGSEEEEESSSS-TTS--EEEES-HHHHHHHHHHTE
T ss_pred EEEEEeccc-ccccCCCCCceEEcceEEEEECCCcCCCCCCcccccCCHHHHHHHHHHcC
Confidence 568888877 45555542 333321 211111223678999999999999997
No 7
>PRK05370 argininosuccinate synthase; Validated
Probab=75.21 E-value=1.7 Score=39.11 Aligned_cols=21 Identities=24% Similarity=0.591 Sum_probs=18.9
Q ss_pred eeCCHHHHHHHHHHcCCeEEE
Q 032925 107 SFDSKEAAREFAERHGWEYVV 127 (130)
Q Consensus 107 ~F~SkE~Aiafaek~Gw~Y~V 127 (130)
.|+|+++.|+||++||++..+
T Consensus 165 ~f~sR~e~i~Ya~~hGIpv~~ 185 (447)
T PRK05370 165 ELGGRAEMSEFLIAHGFDYKM 185 (447)
T ss_pred ccCCHHHHHHHHHHcCCCCCc
Confidence 689999999999999998654
No 8
>PF08722 Tn7_Tnp_TnsA_N: TnsA endonuclease N terminal; InterPro: IPR014833 The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5'-end of the transposon is carried out by TnsA, and breakage and joining at the 3'-end is carried out by TnsB. The N-terminal domain of TnsA is catalytic. ; PDB: 1F1Z_B 1T0F_B.
Probab=72.22 E-value=4.5 Score=27.37 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=13.4
Q ss_pred HHHHHHHHHHcCCeEEEE
Q 032925 111 KEAAREFAERHGWEYVVS 128 (130)
Q Consensus 111 kE~Aiafaek~Gw~Y~V~ 128 (130)
.+.|-.||+++||+|.|.
T Consensus 69 ~~~~~~y~~~~g~~f~iv 86 (88)
T PF08722_consen 69 LEIEREYWEEQGIPFRIV 86 (88)
T ss_dssp HHHHHHHHHHCT--EEEE
T ss_pred HHHHHHHHHHcCCeEEEE
Confidence 456889999999999985
No 9
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors. Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y ....
Probab=63.31 E-value=6.4 Score=28.51 Aligned_cols=15 Identities=40% Similarity=0.793 Sum_probs=11.9
Q ss_pred HHHHHHcCCeEEEEE
Q 032925 115 REFAERHGWEYVVSV 129 (130)
Q Consensus 115 iafaek~Gw~Y~V~~ 129 (130)
..||+++||+|+|.-
T Consensus 73 ~~~a~~~gw~~~~l~ 87 (115)
T PF03462_consen 73 QRYAERRGWKVEVLD 87 (115)
T ss_dssp HHHHHHTT-EEEEEE
T ss_pred HHHHHHcCCEEEEEe
Confidence 489999999999863
No 10
>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function.
Probab=62.30 E-value=6.7 Score=27.68 Aligned_cols=14 Identities=29% Similarity=0.567 Sum_probs=10.7
Q ss_pred eeeeCCHHHHHHHH
Q 032925 105 GLSFDSKEAAREFA 118 (130)
Q Consensus 105 ~L~F~SkE~Aiafa 118 (130)
.|-|.+++||.+||
T Consensus 26 Vl~FE~edDA~RYa 39 (86)
T PF11360_consen 26 VLMFEDEDDAERYA 39 (86)
T ss_pred EEEEccHHHHHHHH
Confidence 77888888887664
No 11
>PF08803 ydhR: Putative mono-oxygenase ydhR; InterPro: IPR014910 YdhR is a homodimeric protein that comprises of a central four-stranded beta sheet and four surrounding alpha helices []. It shows structural homology to the ActVA-Orf6 and YgiN proteins which indicates it could be a mono-oxygenase. ; PDB: 1WD6_B 2HIQ_B 2ASY_B.
Probab=61.56 E-value=5 Score=29.27 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=22.8
Q ss_pred ccCCCCccCCcCCceeeeCCHHHHHHHHHHc
Q 032925 91 WTSTGDPYANVGDAGLSFDSKEAAREFAERH 121 (130)
Q Consensus 91 WtsS~D~~sqv~~~~L~F~SkE~Aiafaek~ 121 (130)
||.+.++.. .++ ..-|+|+++|.+|+++|
T Consensus 38 Wten~~t~e-aGG-iYLFe~e~~A~aY~~~h 66 (97)
T PF08803_consen 38 WTENEETGE-AGG-IYLFEDEASAEAYLEMH 66 (97)
T ss_dssp EEEETTTTE-EEE-EEEESSHHHHHHHHHHH
T ss_pred EEecCCCCc-cce-EEEECCHHHHHHHHHHH
Confidence 787777753 233 67799999999999987
No 12
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=61.35 E-value=4.7 Score=35.31 Aligned_cols=22 Identities=41% Similarity=0.832 Sum_probs=19.6
Q ss_pred ceeeeCCHHHHHHHHHHcCCeE
Q 032925 104 AGLSFDSKEAAREFAERHGWEY 125 (130)
Q Consensus 104 ~~L~F~SkE~Aiafaek~Gw~Y 125 (130)
+-+-|.+++||.+||+.+||+-
T Consensus 215 ~DiifgNe~EA~af~~~~~~~t 236 (343)
T KOG2854|consen 215 ADIIFGNEDEAAAFARAHGWET 236 (343)
T ss_pred ceEEEcCHHHHHHHHHhhCCcc
Confidence 3678999999999999999963
No 13
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=59.05 E-value=8.8 Score=24.84 Aligned_cols=14 Identities=36% Similarity=0.432 Sum_probs=12.8
Q ss_pred eeeeCCHHHHHHHH
Q 032925 105 GLSFDSKEAAREFA 118 (130)
Q Consensus 105 ~L~F~SkE~Aiafa 118 (130)
.+.|+|.++|.+|-
T Consensus 43 iieFPs~~aa~~~~ 56 (65)
T PF07045_consen 43 IIEFPSMEAAKAWY 56 (65)
T ss_dssp EEEESSHHHHHHHH
T ss_pred EEECCCHHHHHHHH
Confidence 89999999999874
No 14
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=58.50 E-value=6.6 Score=28.77 Aligned_cols=20 Identities=25% Similarity=0.611 Sum_probs=15.2
Q ss_pred eeeCCHHHHHHHHHHcCCeEE
Q 032925 106 LSFDSKEAAREFAERHGWEYV 126 (130)
Q Consensus 106 L~F~SkE~Aiafaek~Gw~Y~ 126 (130)
|.|+ .+++++||+++||.++
T Consensus 107 Lg~~-~~el~~~~~~~gW~~d 126 (143)
T PF10075_consen 107 LGLS-EEELEKFIKSRGWTVD 126 (143)
T ss_dssp TTS--HHHHHHHHHHHT-EE-
T ss_pred hCCC-HHHHHHHHHHcCCEEC
Confidence 5566 8999999999999986
No 15
>PF06194 Phage_Orf51: Phage Conserved Open Reading Frame 51; InterPro: IPR009338 This entry is represented by the Staphylococcus phage PVL (bacteriophage phi-PVL), Orf51. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=57.11 E-value=9.2 Score=27.12 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=20.9
Q ss_pred eeeeCCHHHHHHHHHHcCCeEE
Q 032925 105 GLSFDSKEAAREFAERHGWEYV 126 (130)
Q Consensus 105 ~L~F~SkE~Aiafaek~Gw~Y~ 126 (130)
...|+|+++=..|-+.+++.||
T Consensus 51 KktFn~~~Ef~~Yi~~~~L~~e 72 (80)
T PF06194_consen 51 KKTFNNKEEFENYIKQHELYFE 72 (80)
T ss_pred hhhcCcHHHHHHHHHHcCCcee
Confidence 8899999999999999999887
No 16
>PRK04527 argininosuccinate synthase; Provisional
Probab=54.25 E-value=8.5 Score=34.08 Aligned_cols=21 Identities=10% Similarity=0.289 Sum_probs=17.9
Q ss_pred eeCCHHHHHHHHHHcCCeEEE
Q 032925 107 SFDSKEAAREFAERHGWEYVV 127 (130)
Q Consensus 107 ~F~SkE~Aiafaek~Gw~Y~V 127 (130)
+++++++.|+||++||++..+
T Consensus 150 k~~~R~~~i~ya~~~gipv~~ 170 (400)
T PRK04527 150 HTQTRAYEQKYLEERGFGVRA 170 (400)
T ss_pred ccccHHHHHHHHHHcCCCCCC
Confidence 457999999999999997653
No 17
>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function.
Probab=54.10 E-value=17 Score=25.66 Aligned_cols=49 Identities=18% Similarity=0.284 Sum_probs=32.1
Q ss_pred CCcEEEecCC---CCccCCCcCccCCCCccCCcCCceeeeCCHHHHHHHHHHcCCeEEEE
Q 032925 72 GRWKINFMST---QKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVS 128 (130)
Q Consensus 72 ~~W~LeF~~~---~~w~nPLMGWtsS~D~~sqv~~~~L~F~SkE~Aiafaek~Gw~Y~V~ 128 (130)
+.=++=|+.. .|+..=|-. .++|... +.-=..++-+.||+++|+.|+|.
T Consensus 23 ~~~Vl~FE~edDA~RYa~lLEA---qd~~~p~-----Ve~id~~~i~~fC~~~gy~~~iv 74 (86)
T PF11360_consen 23 RNVVLMFEDEDDAERYAGLLEA---QDFPDPT-----VEEIDPEEIEEFCRSAGYEYEIV 74 (86)
T ss_pred CCEEEEEccHHHHHHHHHHHHh---cCCCCCC-----eEEECHHHHHHHHHHCCceEEEE
Confidence 4456777764 366555532 2333323 35556889999999999999985
No 18
>KOG4748 consensus Subunit of Golgi mannosyltransferase complex [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=52.86 E-value=11 Score=33.27 Aligned_cols=19 Identities=32% Similarity=0.628 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHcCCeEEEE
Q 032925 110 SKEAAREFAERHGWEYVVS 128 (130)
Q Consensus 110 SkE~Aiafaek~Gw~Y~V~ 128 (130)
+-+.=|+||++||+++++.
T Consensus 127 ~ikNridYA~rHgy~~~~~ 145 (364)
T KOG4748|consen 127 SIKNRIDYARRHGYEFEYK 145 (364)
T ss_pred HHHhHHHHHHHhCCeEEEE
Confidence 7778899999999999875
No 19
>PF12518 DUF3721: Protein of unknown function; InterPro: IPR022196 This domain family is found in bacteria and eukaryotes, and is approximately 30 amino acids in length. There is a conserved WMPC sequence motif. There are two completely conserved residues (A and C) that may be functionally important.
Probab=52.11 E-value=14 Score=22.34 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=14.1
Q ss_pred eCCHHHHHHHHHHcCC
Q 032925 108 FDSKEAAREFAERHGW 123 (130)
Q Consensus 108 F~SkE~Aiafaek~Gw 123 (130)
|+|+++|.+=|.+.|-
T Consensus 1 y~tk~eAe~~A~~~GC 16 (34)
T PF12518_consen 1 YPTKAEAEKRAKELGC 16 (34)
T ss_pred CCcHHHHHHHHHHcCC
Confidence 8999999999998773
No 20
>PRK11118 putative monooxygenase; Provisional
Probab=51.42 E-value=18 Score=26.71 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=22.5
Q ss_pred ccCCCCccCCcCCceeeeCCHHHHHHHHHHc
Q 032925 91 WTSTGDPYANVGDAGLSFDSKEAAREFAERH 121 (130)
Q Consensus 91 WtsS~D~~sqv~~~~L~F~SkE~Aiafaek~ 121 (130)
||.+.++..- |+ ..-|+++++|-+|.++|
T Consensus 41 WTen~~t~ea-GG-iYlF~~e~~a~aYl~mH 69 (100)
T PRK11118 41 WTENEKTQEA-GG-IYLFEDEASAEAYLEMH 69 (100)
T ss_pred eecCCCCccc-ce-EEEECCHHHHHHHHHHH
Confidence 7777776532 33 67899999999999876
No 21
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=49.02 E-value=23 Score=28.35 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.0
Q ss_pred eeeeCCHHHHHHHHHHcCCeE-EEE
Q 032925 105 GLSFDSKEAAREFAERHGWEY-VVS 128 (130)
Q Consensus 105 ~L~F~SkE~Aiafaek~Gw~Y-~V~ 128 (130)
--.|.+.++|++|.++++.++ .|.
T Consensus 20 ~~~f~~~~~A~~~l~~~~~p~~ViK 44 (194)
T PF01071_consen 20 YKVFTDYEEALEYLEEQGYPYVVIK 44 (194)
T ss_dssp EEEESSHHHHHHHHHHHSSSEEEEE
T ss_pred eeEECCHHHHHHHHHhcCCCceEEc
Confidence 457999999999999999999 554
No 22
>PF01693 Cauli_VI: Caulimovirus viroplasmin; InterPro: IPR011320 This entry represents the N-terminal domain of RNase HI, which has a 3-layer alpha/beta/alpha structure []. This domain is lacking in retroviral and prokaryotic enzymes, but shows a striking structural similarity to the ribosomal protein L9 N-terminal domain, and may function as a regulatory RNA-binding module. However, the topology of this domain differs from structures of known RNA binding domains such as the double-stranded RNA binding domain (dsRBD), the hnRNP K homology (KH) domain and the RNP motif. Eukaryotic RNases HI possess either one or two copies of this small N-terminal domain, in addition to the well-conserved catalytic RNase H domain. RNase HI belongs to the family of ribonuclease H enzymes that recognise RNA:DNA hybrids and degrade the RNA component. ; PDB: 1QHK_A 3BSU_C.
Probab=48.31 E-value=18 Score=21.94 Aligned_cols=13 Identities=46% Similarity=0.636 Sum_probs=11.7
Q ss_pred eeeeCCHHHHHHH
Q 032925 105 GLSFDSKEAAREF 117 (130)
Q Consensus 105 ~L~F~SkE~Aiaf 117 (130)
...|+|+|+|.+|
T Consensus 32 ~k~F~t~~eA~~~ 44 (44)
T PF01693_consen 32 YKSFKTREEAEEF 44 (44)
T ss_dssp EEEESSHHHHHHH
T ss_pred ECCcCCHHHHhhC
Confidence 6789999999987
No 23
>PLN00139 hypothetical protein; Provisional
Probab=47.47 E-value=17 Score=30.77 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=18.9
Q ss_pred eeeCCHHHHHHHHHHcCCeEEE
Q 032925 106 LSFDSKEAAREFAERHGWEYVV 127 (130)
Q Consensus 106 L~F~SkE~Aiafaek~Gw~Y~V 127 (130)
..-++|+++.+||.++|++|+-
T Consensus 195 F~t~d~~eve~~~~~~g~~~eW 216 (320)
T PLN00139 195 FGTSDKAEAERRAKALGMDMEW 216 (320)
T ss_pred hCCCCHHHHHHHHHHcCCeEEE
Confidence 3457899999999999999974
No 24
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
Probab=46.17 E-value=18 Score=29.68 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHcCCeE
Q 032925 109 DSKEAAREFAERHGWEY 125 (130)
Q Consensus 109 ~SkE~Aiafaek~Gw~Y 125 (130)
-++++|++||++||+++
T Consensus 191 ~~~~~~~~fA~~~~l~~ 207 (219)
T PRK05773 191 LSKEKAKKIAKNLGFPL 207 (219)
T ss_pred cCHHHHHHHHHHcCCcE
Confidence 37999999999999987
No 25
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=45.52 E-value=16 Score=29.85 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHcCCeEE
Q 032925 109 DSKEAAREFAERHGWEYV 126 (130)
Q Consensus 109 ~SkE~Aiafaek~Gw~Y~ 126 (130)
..++++++||++||+++.
T Consensus 172 ar~~~~~~fa~~h~l~~i 189 (203)
T COG0108 172 ARLPELEEFAKEHGLPVI 189 (203)
T ss_pred cChHHHHHHHHHcCCcEE
Confidence 467999999999999874
No 26
>PF13031 DUF3892: Protein of unknown function (DUF3892)
Probab=44.87 E-value=22 Score=24.10 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=17.8
Q ss_pred eeCCHHHHHHHHHHcCCeEEEE
Q 032925 107 SFDSKEAAREFAERHGWEYVVS 128 (130)
Q Consensus 107 ~F~SkE~Aiafaek~Gw~Y~V~ 128 (130)
-.-|+++||+++|+..+.|.|.
T Consensus 29 ~~~s~~~~i~~ie~g~~~~yv~ 50 (85)
T PF13031_consen 29 WKYSREEAIAWIENGKWSFYVE 50 (85)
T ss_pred ccccHHHHHHHHHcCCceEEeC
Confidence 4458999999999987777663
No 27
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=44.47 E-value=41 Score=27.69 Aligned_cols=39 Identities=21% Similarity=0.547 Sum_probs=27.2
Q ss_pred CccCC---CcCccCCCCccCCcCCceeeeCCHHHHHHHHHHcCCeEEEE
Q 032925 83 KWENP---LMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVS 128 (130)
Q Consensus 83 ~w~nP---LMGWtsS~D~~sqv~~~~L~F~SkE~Aiafaek~Gw~Y~V~ 128 (130)
-|.|| .-||..+ + .. ....|. .+++.+|++++|+++.|.
T Consensus 176 lWsDP~~~~~~~~~~--~-Rg---~g~~fg-~~~~~~Fl~~n~l~~iiR 217 (271)
T smart00156 176 LWSDPDQPVDGFQPS--I-RG---ASYYFG-PDAVDEFLKKNNLKLIIR 217 (271)
T ss_pred eecCCCcccCCCccC--C-CC---CccccC-HHHHHHHHHHCCCeEEEe
Confidence 57777 3566544 2 11 255675 788889999999999885
No 28
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]. The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=41.38 E-value=51 Score=21.03 Aligned_cols=24 Identities=42% Similarity=0.767 Sum_probs=19.7
Q ss_pred eeeeCCHHHHH----HHHHHcCCeEEEE
Q 032925 105 GLSFDSKEAAR----EFAERHGWEYVVS 128 (130)
Q Consensus 105 ~L~F~SkE~Ai----afaek~Gw~Y~V~ 128 (130)
.+.|+|+++.. .||-+++.+|.|.
T Consensus 7 G~~F~~~~e~k~av~~yai~~~~~~~v~ 34 (67)
T PF03108_consen 7 GQTFPSKEEFKEAVREYAIKNGFEFKVK 34 (67)
T ss_pred CCEECCHHHHHHHHHHHHHhcCcEEEEe
Confidence 78999998764 6888889888774
No 29
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=40.82 E-value=25 Score=25.80 Aligned_cols=20 Identities=45% Similarity=0.486 Sum_probs=16.5
Q ss_pred CCccCCcCCceeeeCCHHHHHHH
Q 032925 95 GDPYANVGDAGLSFDSKEAAREF 117 (130)
Q Consensus 95 ~D~~sqv~~~~L~F~SkE~Aiaf 117 (130)
.||-.+| .+.|+|+|.|.++
T Consensus 50 w~ptr~v---viEFps~~~ar~~ 69 (96)
T COG5470 50 WRPTRNV---VIEFPSLEAARDC 69 (96)
T ss_pred CCcccEE---EEEcCCHHHHHHH
Confidence 4666677 8999999999876
No 30
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=40.41 E-value=26 Score=21.33 Aligned_cols=20 Identities=15% Similarity=0.386 Sum_probs=17.5
Q ss_pred eCCHHHHHHHHHHcCCeEEE
Q 032925 108 FDSKEAAREFAERHGWEYVV 127 (130)
Q Consensus 108 F~SkE~Aiafaek~Gw~Y~V 127 (130)
..+.|+-+++|+.+|+.+..
T Consensus 26 ~~~~~e~~~lA~~~Gy~ft~ 45 (49)
T PF07862_consen 26 CQNPEEVVALAREAGYDFTE 45 (49)
T ss_pred cCCHHHHHHHHHHcCCCCCH
Confidence 45999999999999998864
No 31
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=39.60 E-value=40 Score=20.91 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHcCCeEEEE
Q 032925 109 DSKEAAREFAERHGWEYVVS 128 (130)
Q Consensus 109 ~SkE~Aiafaek~Gw~Y~V~ 128 (130)
-|.++|.+..+++||.+.+.
T Consensus 9 ~~~~~a~~~l~~~g~~~~~~ 28 (63)
T PF03793_consen 9 MTYDEAKSILEAAGLTVNVV 28 (63)
T ss_dssp SBHHHHHHHHHHTT-EEEEE
T ss_pred CcHHHHHHHHHHCCCEEEEE
Confidence 47899999999999987764
No 32
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.25 E-value=19 Score=31.77 Aligned_cols=20 Identities=40% Similarity=0.499 Sum_probs=17.1
Q ss_pred eeeeCCHHHHHHHHHHcCCe
Q 032925 105 GLSFDSKEAAREFAERHGWE 124 (130)
Q Consensus 105 ~L~F~SkE~Aiafaek~Gw~ 124 (130)
.+.=+|.|-|++||++|+|.
T Consensus 37 ava~~s~~~A~~fAq~~~~~ 56 (351)
T KOG2741|consen 37 AVADPSLERAKEFAQRHNIP 56 (351)
T ss_pred EEecccHHHHHHHHHhcCCC
Confidence 45556999999999999995
No 33
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=39.20 E-value=26 Score=24.99 Aligned_cols=17 Identities=41% Similarity=0.780 Sum_probs=15.4
Q ss_pred eeeeCCHHHHHHHHHHc
Q 032925 105 GLSFDSKEAAREFAERH 121 (130)
Q Consensus 105 ~L~F~SkE~Aiafaek~ 121 (130)
.|.|.|++||-+|.++-
T Consensus 86 GLnF~se~EA~~F~~~v 102 (106)
T smart00461 86 GLNFASEEEAKKFRKKV 102 (106)
T ss_pred EeecCCHHHHHHHHHHH
Confidence 89999999999998863
No 34
>PRK12863 YciI-like protein; Reviewed
Probab=39.08 E-value=55 Score=22.45 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=20.7
Q ss_pred eeeeCCHHHHHHHHH-----HcCC--eEEEEEC
Q 032925 105 GLSFDSKEAAREFAE-----RHGW--EYVVSVY 130 (130)
Q Consensus 105 ~L~F~SkE~Aiafae-----k~Gw--~Y~V~~~ 130 (130)
.+..+|+|+|.+|.+ ++|+ .|+|..|
T Consensus 55 i~~a~~~eea~~~~~~DP~~~~G~~~~~~I~~w 87 (94)
T PRK12863 55 VVEAESRAAAEAFAAADPFAKAGLYESVDIKPF 87 (94)
T ss_pred EEEeCCHHHHHHHHHcCChhhcCCeeEEEEEEh
Confidence 458899999999987 4565 7888765
No 35
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=38.94 E-value=21 Score=28.85 Aligned_cols=17 Identities=24% Similarity=0.610 Sum_probs=11.8
Q ss_pred HHHHHHHHHcCCeEEEE
Q 032925 112 EAAREFAERHGWEYVVS 128 (130)
Q Consensus 112 E~Aiafaek~Gw~Y~V~ 128 (130)
+-=+.||++||++|.+.
T Consensus 31 ~Nr~~Ya~~HgY~~~~~ 47 (239)
T PF05637_consen 31 QNRVDYARRHGYDLYYR 47 (239)
T ss_dssp --HHHHHHHHT-EEEEE
T ss_pred HHHHHHHHhcCCEEEEE
Confidence 33468999999999873
No 36
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=38.62 E-value=28 Score=24.71 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=20.7
Q ss_pred CCCcCccCCCCccCCcCCceeeeCCHHHHHHHHHH
Q 032925 86 NPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAER 120 (130)
Q Consensus 86 nPLMGWtsS~D~~sqv~~~~L~F~SkE~Aiafaek 120 (130)
+-+.-|.+. ...+ .|.|.|.+||-.|+++
T Consensus 78 ~~Fh~f~~~---~~~~---GLnF~se~eA~~F~~~ 106 (111)
T PF00568_consen 78 PFFHQFEDD---DCVY---GLNFASEEEADQFYKK 106 (111)
T ss_dssp SSEEEEEET---TCEE---EEEESSHHHHHHHHHH
T ss_pred CcEEEEEeC---CeEE---EEecCCHHHHHHHHHH
Confidence 344555543 2244 8999999999999985
No 37
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=37.87 E-value=34 Score=21.07 Aligned_cols=19 Identities=32% Similarity=0.270 Sum_probs=16.9
Q ss_pred ceeeeCCHHHHHHHHHHcC
Q 032925 104 AGLSFDSKEAAREFAERHG 122 (130)
Q Consensus 104 ~~L~F~SkE~Aiafaek~G 122 (130)
.-+.|.|.|+|...++.++
T Consensus 42 a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 42 AFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp EEEEESSHHHHHHHHHHHT
T ss_pred EEEEeCCHHHHHHHHHHCC
Confidence 3789999999999999877
No 38
>COG4314 NosL Predicted lipoprotein involved in nitrous oxide reduction [Energy production and conversion]
Probab=37.79 E-value=24 Score=28.31 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=17.1
Q ss_pred eeeeCCHHHHHHHHHHcCCe
Q 032925 105 GLSFDSKEAAREFAERHGWE 124 (130)
Q Consensus 105 ~L~F~SkE~Aiafaek~Gw~ 124 (130)
.+-|.++|+|.+|+.++|=.
T Consensus 130 A~pF~~e~aA~~faa~~GGr 149 (176)
T COG4314 130 ASPFSDEEAAERFAADNGGR 149 (176)
T ss_pred cccccCHHHHHHHHHhcCCe
Confidence 44599999999999999854
No 39
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=37.64 E-value=36 Score=22.15 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=18.6
Q ss_pred eeeeC----CHHHHHHHHHHcCCeEEEE
Q 032925 105 GLSFD----SKEAAREFAERHGWEYVVS 128 (130)
Q Consensus 105 ~L~F~----SkE~Aiafaek~Gw~Y~V~ 128 (130)
.+.++ ..++|++|.+++|+..||.
T Consensus 49 ~l~l~g~~~~~~~a~~~L~~~~v~vEvl 76 (76)
T PF09383_consen 49 ILELPGDDEEIEKAIAYLREQGVEVEVL 76 (76)
T ss_dssp EEEEES-HHHHHHHHHHHHHTTEEEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHCCCeEEEC
Confidence 56662 2468999999999999874
No 40
>PRK12865 YciI-like protein; Reviewed
Probab=37.54 E-value=54 Score=22.71 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=19.3
Q ss_pred eeeeCCHHHHHHHHHH-----cCC--eEEEEEC
Q 032925 105 GLSFDSKEAAREFAER-----HGW--EYVVSVY 130 (130)
Q Consensus 105 ~L~F~SkE~Aiafaek-----~Gw--~Y~V~~~ 130 (130)
.+.++|+|+|.+++++ +|+ .++|..|
T Consensus 56 i~~a~s~e~a~~~~~~DP~~~~g~~~~v~I~~~ 88 (97)
T PRK12865 56 IVKAETKEAAKALADADPYAKAGLFESVEVKAY 88 (97)
T ss_pred EEEcCCHHHHHHHHHcCCchhcCCeeEEEEEEe
Confidence 4589999999999974 564 4666544
No 41
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=37.34 E-value=41 Score=26.72 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=18.2
Q ss_pred eCCHHHHHHHHHHcCCeEEEEE
Q 032925 108 FDSKEAAREFAERHGWEYVVSV 129 (130)
Q Consensus 108 F~SkE~Aiafaek~Gw~Y~V~~ 129 (130)
-.|.|+|++||++.|++..|..
T Consensus 24 ~~~~eea~~~a~~iGyPVliKa 45 (211)
T PF02786_consen 24 ISSVEEALEFAEEIGYPVLIKA 45 (211)
T ss_dssp BSSHHHHHHHHHHH-SSEEEEE
T ss_pred CCCHHHHHHHHHhcCCceEEee
Confidence 3789999999999999988764
No 42
>PRK00823 phhB pterin-4-alpha-carbinolamine dehydratase; Validated
Probab=36.98 E-value=33 Score=24.03 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=24.0
Q ss_pred CCCcCccCCCCccCCcCCceeeeCCHHHHHHHHHH
Q 032925 86 NPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAER 120 (130)
Q Consensus 86 nPLMGWtsS~D~~sqv~~~~L~F~SkE~Aiafaek 120 (130)
..|-||.-..|+.. + .-..+|++-.+|++|+.+
T Consensus 16 ~~l~gW~~~~~~~~-l-~r~f~f~~f~~a~~f~~~ 48 (97)
T PRK00823 16 PQLPGWTLVGDRDA-I-ERTFKFKNFNEAFAFMNR 48 (97)
T ss_pred hcCCCCeEeCCcCe-E-EEEEEeCCHHHHHHHHHH
Confidence 45679988877531 1 127889999999999765
No 43
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=36.88 E-value=31 Score=24.36 Aligned_cols=16 Identities=44% Similarity=0.812 Sum_probs=14.9
Q ss_pred eeeeCCHHHHHHHHHH
Q 032925 105 GLSFDSKEAAREFAER 120 (130)
Q Consensus 105 ~L~F~SkE~Aiafaek 120 (130)
.|.|.|+|||-+|.++
T Consensus 84 GL~F~se~eA~~F~~~ 99 (104)
T cd00837 84 GLNFASEEEAAQFRKK 99 (104)
T ss_pred EEeeCCHHHHHHHHHH
Confidence 8999999999999876
No 44
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=36.84 E-value=44 Score=19.99 Aligned_cols=19 Identities=32% Similarity=0.342 Sum_probs=16.0
Q ss_pred eeeeCCHHHHHHHHH-HcCC
Q 032925 105 GLSFDSKEAAREFAE-RHGW 123 (130)
Q Consensus 105 ~L~F~SkE~Aiafae-k~Gw 123 (130)
-+.|.+.|+|....+ -+|.
T Consensus 43 ~V~F~~~~~a~~a~~~l~g~ 62 (70)
T PF00076_consen 43 FVEFESEEDAEKALEELNGK 62 (70)
T ss_dssp EEEESSHHHHHHHHHHHTTE
T ss_pred EEEEcCHHHHHHHHHHcCCC
Confidence 789999999999888 5663
No 45
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=36.72 E-value=26 Score=25.90 Aligned_cols=44 Identities=27% Similarity=0.311 Sum_probs=27.1
Q ss_pred CCCcEEEecCCC-----CccCCCcCccCCCCccCCcCCceeeeCCHHHHHHHHHH
Q 032925 71 LGRWKINFMSTQ-----KWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAER 120 (130)
Q Consensus 71 t~~W~LeF~~~~-----~w~nPLMGWtsS~D~~sqv~~~~L~F~SkE~Aiafaek 120 (130)
.++.+||.+-.. +=.-.+.-|.+. -.+. .|.|.|+|||-+|.+.
T Consensus 54 ~~~~v~e~~l~~~l~y~k~~p~Fh~w~~~---~~v~---GLnF~Se~eA~~F~~~ 102 (111)
T cd01207 54 DHQVVINCAIVKGLKYNQATPTFHQWRDA---RQVY---GLNFGSKEDATMFASA 102 (111)
T ss_pred CCcEEEEEEecCCceeeecCCcceeeecC---CeEE---eeccCCHHHHHHHHHH
Confidence 356677776421 111233344433 2454 8999999999999875
No 46
>PRK12864 YciI-like protein; Reviewed
Probab=36.29 E-value=62 Score=22.22 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=20.4
Q ss_pred eeeeCCHHHHHHHHHH-----cCC--eEEEEEC
Q 032925 105 GLSFDSKEAAREFAER-----HGW--EYVVSVY 130 (130)
Q Consensus 105 ~L~F~SkE~Aiafaek-----~Gw--~Y~V~~~ 130 (130)
.+.++|+|+|.+|.+. +|+ +|+|..|
T Consensus 53 i~~a~s~eea~~~~~~DPy~~aGl~~~~~I~~w 85 (89)
T PRK12864 53 IFEAEDEETVRQLIEADPYWQNGIWTEYEVYPW 85 (89)
T ss_pred EEEeCCHHHHHHHHHcCCchhcCCeEEEEEEEe
Confidence 4689999999999874 676 6777655
No 47
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=35.90 E-value=48 Score=25.57 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=25.3
Q ss_pred cCccCCCCccCCcCCceeeeCCHHHHHHHHHHcCCeEEEE
Q 032925 89 MGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVS 128 (130)
Q Consensus 89 MGWtsS~D~~sqv~~~~L~F~SkE~Aiafaek~Gw~Y~V~ 128 (130)
...-.+|||+ .|.+--.-+.+++++|++++|.
T Consensus 74 V~~L~~GDP~--------~~~~~~~l~~~~~~~g~~vevi 105 (229)
T TIGR01465 74 VVRLHTGDPS--------IYGAIAEQMQLLEALGIPYEVV 105 (229)
T ss_pred EEEEeCcCcc--------ccccHHHHHHHHHHCCCCEEEE
Confidence 4455789996 5777778888999999998875
No 48
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=35.30 E-value=24 Score=31.64 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.1
Q ss_pred eeCCHHHHHHHHHHcCCeEEEE
Q 032925 107 SFDSKEAAREFAERHGWEYVVS 128 (130)
Q Consensus 107 ~F~SkE~Aiafaek~Gw~Y~V~ 128 (130)
.|. +|+-|+||+++|+++.+.
T Consensus 151 ~~~-R~~~i~Ya~~~gipv~~~ 171 (403)
T COG0137 151 NLT-REEEIEYAEEHGIPVKAT 171 (403)
T ss_pred ccC-hHHHHHHHHHcCCCcccc
Confidence 455 999999999999998764
No 49
>COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein [General function prediction only]
Probab=35.13 E-value=22 Score=29.62 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=12.9
Q ss_pred eeCCHHHHHHHHHH
Q 032925 107 SFDSKEAAREFAER 120 (130)
Q Consensus 107 ~F~SkE~Aiafaek 120 (130)
.|+|+|+|.+||+.
T Consensus 39 sf~s~EeA~a~~~g 52 (225)
T COG3341 39 SFKSYEEAEAYCEG 52 (225)
T ss_pred ccccHHHHHHHhcc
Confidence 59999999999994
No 50
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=34.98 E-value=46 Score=27.81 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=19.8
Q ss_pred eCCHHHHHHHHHHcCCeEEEEE
Q 032925 108 FDSKEAAREFAERHGWEYVVSV 129 (130)
Q Consensus 108 F~SkE~Aiafaek~Gw~Y~V~~ 129 (130)
..|.||.+.+|..+|+.|.|.+
T Consensus 43 ~~S~Eel~~~~~~~gi~wiVii 64 (273)
T PF12745_consen 43 SPSQEELQSYCREDGISWIVII 64 (273)
T ss_pred CCCHHHHHHHHHHCCCCEEEEE
Confidence 3599999999999999999974
No 51
>PRK13864 type IV secretion system lytic transglycosylase VirB1; Provisional
Probab=34.94 E-value=55 Score=27.39 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=18.1
Q ss_pred eeeeCCHHHHHHHHHH---cCCeEEE
Q 032925 105 GLSFDSKEAAREFAER---HGWEYVV 127 (130)
Q Consensus 105 ~L~F~SkE~Aiafaek---~Gw~Y~V 127 (130)
.+.|.++++||+.+++ .|..|.|
T Consensus 69 ~l~~qs~~EAi~~a~~l~~~g~s~Dv 94 (245)
T PRK13864 69 TLHWQNHAQATQSVRHRLEARHSLDV 94 (245)
T ss_pred ccCCCCHHHHHHHHHHHHhcCCceee
Confidence 5688999999998864 5666665
No 52
>cd00913 PCD_DCoH_subfamily_a PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein).
Probab=34.92 E-value=49 Score=22.09 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=20.9
Q ss_pred CccCCCCccCCcCCceeeeCCHHHHHHHHHH
Q 032925 90 GWTSTGDPYANVGDAGLSFDSKEAAREFAER 120 (130)
Q Consensus 90 GWtsS~D~~sqv~~~~L~F~SkE~Aiafaek 120 (130)
||.-..|+.. + ....+|++-.+|++|+.+
T Consensus 1 gW~~~~~~~~-l-~r~f~f~~f~~a~~f~~~ 29 (76)
T cd00913 1 GWELADDGLK-L-ERTFRFKNFVEALEFVNA 29 (76)
T ss_pred CCcCcCCCCe-E-EEEEEcCCHHHHHHHHHH
Confidence 7887776531 1 127789999999999765
No 53
>COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism]
Probab=34.84 E-value=49 Score=27.64 Aligned_cols=35 Identities=34% Similarity=0.439 Sum_probs=26.6
Q ss_pred CCccCCCcCccCCCCccCCcCCceeeeCCHHHHHHHHHHcCCeEEEE
Q 032925 82 QKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVS 128 (130)
Q Consensus 82 ~~w~nPLMGWtsS~D~~sqv~~~~L~F~SkE~Aiafaek~Gw~Y~V~ 128 (130)
.+-.--|-| |||+ -|.---+=++++.++|++|+|.
T Consensus 81 G~~VVRLKg----GDP~--------iFGRggEE~~~l~~~gI~~eVV 115 (244)
T COG0007 81 GKRVVRLKG----GDPY--------IFGRGGEEIEALAEAGIEFEVV 115 (244)
T ss_pred CCeEEEecC----CCCC--------eecCcHHHHHHHHHcCCceEEe
Confidence 344455544 8987 5777778889999999999985
No 54
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=34.21 E-value=48 Score=23.78 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=21.6
Q ss_pred ceeeeCCHHHHHHHHHHcCCeEEEE
Q 032925 104 AGLSFDSKEAAREFAERHGWEYVVS 128 (130)
Q Consensus 104 ~~L~F~SkE~Aiafaek~Gw~Y~V~ 128 (130)
..+..++.+++.+|++++|+.|.+.
T Consensus 68 i~Is~d~~~~~~~~~~~~~~~~~~l 92 (154)
T PRK09437 68 LGISTDKPEKLSRFAEKELLNFTLL 92 (154)
T ss_pred EEEcCCCHHHHHHHHHHhCCCCeEE
Confidence 3678899999999999999998764
No 55
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=33.49 E-value=43 Score=24.25 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=19.1
Q ss_pred eeeeCCHHHHHHHHHHcCCeEEEE
Q 032925 105 GLSFDSKEAAREFAERHGWEYVVS 128 (130)
Q Consensus 105 ~L~F~SkE~Aiafaek~Gw~Y~V~ 128 (130)
.+...+.++-++||+++++++.|.
T Consensus 45 ~~~~~d~~~l~~~a~~~~idlvvv 68 (100)
T PF02844_consen 45 PIDITDPEELADFAKENKIDLVVV 68 (100)
T ss_dssp -S-TT-HHHHHHHHHHTTESEEEE
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEE
Confidence 446788999999999999999885
No 56
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=33.20 E-value=43 Score=28.24 Aligned_cols=24 Identities=29% Similarity=0.528 Sum_probs=20.1
Q ss_pred eeeeCCHHHHHHHHHHcCCeEEEE
Q 032925 105 GLSFDSKEAAREFAERHGWEYVVS 128 (130)
Q Consensus 105 ~L~F~SkE~Aiafaek~Gw~Y~V~ 128 (130)
.+.+++...=|+||.++||+|.+.
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlv 51 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLV 51 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEe
Confidence 457888899999999999999875
No 57
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=33.01 E-value=39 Score=27.29 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=16.2
Q ss_pred eCCHHHHHHHHHHcCCeE
Q 032925 108 FDSKEAAREFAERHGWEY 125 (130)
Q Consensus 108 F~SkE~Aiafaek~Gw~Y 125 (130)
..+++++.+||++||+++
T Consensus 172 m~~~~~~~~fA~~~~l~~ 189 (199)
T TIGR00506 172 MARKPELMEYAKKHNLKL 189 (199)
T ss_pred ccCHHHHHHHHHHcCCcE
Confidence 567899999999999987
No 58
>PRK12354 carbamate kinase; Reviewed
Probab=32.84 E-value=42 Score=28.74 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=18.6
Q ss_pred eeCCHHHHHHHHHHcCCeEEE
Q 032925 107 SFDSKEAAREFAERHGWEYVV 127 (130)
Q Consensus 107 ~F~SkE~Aiafaek~Gw~Y~V 127 (130)
.|-|+|+|.+.++++||.+..
T Consensus 125 ~~y~~~~a~~~~~e~g~~~~~ 145 (307)
T PRK12354 125 PVYDEAEAERLAAEKGWTIKP 145 (307)
T ss_pred cccCHHHHHHHHHhcCCEEee
Confidence 599999999999999997653
No 59
>cd00914 PCD_DCoH_subfamily_b PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon
Probab=32.50 E-value=44 Score=22.35 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=20.9
Q ss_pred CccCCCCccCCcCCceeeeCCHHHHHHHHHH
Q 032925 90 GWTSTGDPYANVGDAGLSFDSKEAAREFAER 120 (130)
Q Consensus 90 GWtsS~D~~sqv~~~~L~F~SkE~Aiafaek 120 (130)
||.-..|+.. + ....+|++-.+|++|..+
T Consensus 1 gW~~~~~~~~-l-~r~f~f~~f~~a~~f~~~ 29 (76)
T cd00914 1 GWTLVDGRDA-I-HKSFKFKDFNEAFGFMTR 29 (76)
T ss_pred CCeEeCCCCe-E-EEEEEeCCHHHHHHHHHH
Confidence 6777666531 1 127899999999999765
No 60
>PLN00200 argininosuccinate synthase; Provisional
Probab=32.25 E-value=31 Score=30.55 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=16.4
Q ss_pred eeCCHHHHHHHHHHcCCeE
Q 032925 107 SFDSKEAAREFAERHGWEY 125 (130)
Q Consensus 107 ~F~SkE~Aiafaek~Gw~Y 125 (130)
.|.||++.++||+++|++.
T Consensus 152 ~~~~r~e~~~~A~~~Gipv 170 (404)
T PLN00200 152 DIKGREDLIEYAKKHNIPV 170 (404)
T ss_pred CCCCHHHHHHHHHHcCCCC
Confidence 3559999999999999964
No 61
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=32.17 E-value=38 Score=20.49 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=11.9
Q ss_pred eCCHHHHHHHHHH
Q 032925 108 FDSKEAAREFAER 120 (130)
Q Consensus 108 F~SkE~Aiafaek 120 (130)
|.|+.||..++.+
T Consensus 24 F~TkkeA~~~~~~ 36 (46)
T PF14657_consen 24 FKTKKEAEKALAK 36 (46)
T ss_pred CCcHHHHHHHHHH
Confidence 9999999999875
No 62
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=32.02 E-value=41 Score=27.56 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=16.3
Q ss_pred eCCHHHHHHHHHHcCCeE
Q 032925 108 FDSKEAAREFAERHGWEY 125 (130)
Q Consensus 108 F~SkE~Aiafaek~Gw~Y 125 (130)
..+++++++||++||+++
T Consensus 182 ma~~~~~~~fA~~~~l~~ 199 (214)
T PRK01792 182 MARTPEIVEFAKKFGYAV 199 (214)
T ss_pred ccCHHHHHHHHHHcCCcE
Confidence 568999999999999987
No 63
>PRK12866 YciI-like protein; Reviewed
Probab=31.68 E-value=80 Score=22.20 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=20.7
Q ss_pred eeeeCCHHHHHHHHHH-----cCC--eEEEEEC
Q 032925 105 GLSFDSKEAAREFAER-----HGW--EYVVSVY 130 (130)
Q Consensus 105 ~L~F~SkE~Aiafaek-----~Gw--~Y~V~~~ 130 (130)
.+.++|+|+|.++.+. +|+ +|+|..|
T Consensus 53 i~~a~s~~e~~~~l~~DPf~~~gl~~~~~I~~w 85 (97)
T PRK12866 53 VFEGDSPAAAEAFARADPYVRNGLVKSWRVRPW 85 (97)
T ss_pred EEEeCCHHHHHHHHHcCChhhcCCEEEEEEEEe
Confidence 4589999999999874 577 5888765
No 64
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.67 E-value=37 Score=27.34 Aligned_cols=42 Identities=26% Similarity=0.401 Sum_probs=26.0
Q ss_pred cCCCcCccCCCCccCCcCCceeee-----------CCHHHHHHHHHHcCCeEE
Q 032925 85 ENPLMGWTSTGDPYANVGDAGLSF-----------DSKEAAREFAERHGWEYV 126 (130)
Q Consensus 85 ~nPLMGWtsS~D~~sqv~~~~L~F-----------~SkE~Aiafaek~Gw~Y~ 126 (130)
.|.|..|-..+-.+.|-+.+.+-. -+-|+|.+|||+||+-|.
T Consensus 99 ynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fl 151 (215)
T KOG0097|consen 99 YNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFL 151 (215)
T ss_pred hhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEE
Confidence 377888876554444321111111 256899999999999763
No 65
>PF08759 DUF1792: Domain of unknown function (DUF1792); InterPro: IPR014869 This domain is found at the C terminus of proteins such as Q97P75 from SWISSPROT that also contain the glycosyl transferase domain at the N terminus. Sometimes it is found independently.
Probab=31.59 E-value=26 Score=29.04 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=20.9
Q ss_pred ccccCCCccccc--ceE-EEecCCCCCCC
Q 032925 40 GMVSGIPEEHLR--RRV-VIYTPARTATQ 65 (130)
Q Consensus 40 ~~vSG~P~e~~~--r~v-rIY~Pak~amQ 65 (130)
+..+|+-.|++. +.| |||-|+|+|=+
T Consensus 125 ~sR~GvgnDLFdnaksI~rIicPsknAf~ 153 (225)
T PF08759_consen 125 KSRSGVGNDLFDNAKSIKRIICPSKNAFS 153 (225)
T ss_pred CeecCCCchhhhCccceEEEECCchhhHH
Confidence 467899999984 566 89999999843
No 66
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=31.22 E-value=46 Score=32.74 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.3
Q ss_pred eCCHHHHHHHHHHcCCeEEEEE
Q 032925 108 FDSKEAAREFAERHGWEYVVSV 129 (130)
Q Consensus 108 F~SkE~Aiafaek~Gw~Y~V~~ 129 (130)
..|.|+|++||+++|++..+.+
T Consensus 170 itt~~EA~eF~k~yG~PvI~KA 191 (1176)
T KOG0369|consen 170 ITTVEEALEFVKEYGLPVIIKA 191 (1176)
T ss_pred cccHHHHHHHHHhcCCcEEEee
Confidence 4689999999999999988764
No 67
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=31.15 E-value=47 Score=26.64 Aligned_cols=19 Identities=32% Similarity=0.644 Sum_probs=15.3
Q ss_pred eCCHHHHHHHHHHcCCeEE
Q 032925 108 FDSKEAAREFAERHGWEYV 126 (130)
Q Consensus 108 F~SkE~Aiafaek~Gw~Y~ 126 (130)
-.+++++.+||++||+++.
T Consensus 167 ~~~~~~~~~fA~~~~l~~v 185 (194)
T PF00926_consen 167 MARRDELEEFAKKHGLPIV 185 (194)
T ss_dssp BHCHHHHHHHHHHTT-EEE
T ss_pred cCCHHHHHHHHHHcCCcEE
Confidence 3578999999999999864
No 68
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=30.91 E-value=1e+02 Score=25.89 Aligned_cols=23 Identities=9% Similarity=0.179 Sum_probs=19.0
Q ss_pred eeCCHHHHHHHHHHcCCeEEEEE
Q 032925 107 SFDSKEAAREFAERHGWEYVVSV 129 (130)
Q Consensus 107 ~F~SkE~Aiafaek~Gw~Y~V~~ 129 (130)
.+=.++++.+||+++|+++.|..
T Consensus 238 ~~fg~~~~~~Fl~~n~l~~iiRg 260 (311)
T cd07419 238 VKFGPDRVHRFLEENDLQMIIRA 260 (311)
T ss_pred eeECHHHHHHHHHHCCCeEEEEe
Confidence 34467889999999999998863
No 69
>PF03682 UPF0158: Uncharacterised protein family (UPF0158); InterPro: IPR005361 This is a small family of hypothetical bacterial proteins of unknown function.
Probab=30.72 E-value=36 Score=26.32 Aligned_cols=17 Identities=41% Similarity=0.505 Sum_probs=14.8
Q ss_pred HHHHHHHHHHcCCeEEE
Q 032925 111 KEAAREFAERHGWEYVV 127 (130)
Q Consensus 111 kE~Aiafaek~Gw~Y~V 127 (130)
++.|+++|+.||+.|..
T Consensus 127 r~~a~eWleen~I~~~~ 143 (163)
T PF03682_consen 127 RERAIEWLEENGIEPVF 143 (163)
T ss_pred HHHHHHHHHHcCCCccc
Confidence 67899999999999864
No 70
>PF01329 Pterin_4a: Pterin 4 alpha carbinolamine dehydratase; InterPro: IPR001533 DCoH is the dimerisation cofactor of hepatocyte nuclear factor 1 (HNF-1) that functions as both a transcriptional coactivator and a pterin dehydratase []. X-ray crystallographic studies have shown that the ligand binds at four sites per tetrameric enzyme, with little apparent conformational change in the protein.; GO: 0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 2V6T_B 2V6U_A 2V6S_B 2EBB_A 1USM_A 1F93_B 1DCP_C 1DCH_E 3HXA_E 1DCO_C ....
Probab=30.53 E-value=43 Score=23.29 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=22.5
Q ss_pred CCCcCccCCC-CccCCcCCceeeeCCHHHHHHHHHH
Q 032925 86 NPLMGWTSTG-DPYANVGDAGLSFDSKEAAREFAER 120 (130)
Q Consensus 86 nPLMGWtsS~-D~~sqv~~~~L~F~SkE~Aiafaek 120 (130)
..|-||.-.+ .-+. -...|++-..|++|..+
T Consensus 15 ~~l~~W~~~~~~~l~----r~f~f~~f~~a~~f~~~ 46 (95)
T PF01329_consen 15 AELPGWKLDGGGRLE----RTFKFKDFAEAVEFVNR 46 (95)
T ss_dssp HTSTTSEEETSSEEE----EEEE-SSHHHHHHHHHH
T ss_pred hcCcCCEECCCCcEE----EEEEeCCHHHHHHHHHH
Confidence 4678999888 3333 27899999999999754
No 71
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=30.09 E-value=58 Score=22.43 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.1
Q ss_pred eeeeCCHHHHHHHHHHcCCeEEEE
Q 032925 105 GLSFDSKEAAREFAERHGWEYVVS 128 (130)
Q Consensus 105 ~L~F~SkE~Aiafaek~Gw~Y~V~ 128 (130)
.+.+.+.+.+.+||+..+|+|.|.
T Consensus 18 ~I~~g~~~~~~~f~~~~~~p~~ly 41 (115)
T PF13911_consen 18 VIGCGSPEGIEKFCELTGFPFPLY 41 (115)
T ss_pred EEEcCCHHHHHHHHhccCCCCcEE
Confidence 567899988999999999999864
No 72
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=29.59 E-value=49 Score=28.42 Aligned_cols=20 Identities=30% Similarity=0.635 Sum_probs=18.2
Q ss_pred eeCCHHHHHHHHHHcCCeEE
Q 032925 107 SFDSKEAAREFAERHGWEYV 126 (130)
Q Consensus 107 ~F~SkE~Aiafaek~Gw~Y~ 126 (130)
.|-|+|+|.+.++++||.|.
T Consensus 134 ~~y~~~~a~~~~~~~g~~~~ 153 (313)
T PRK12454 134 PFYDEEEAKKLAKEKGWIVK 153 (313)
T ss_pred CCcCHHHHHHHHHHcCCEEE
Confidence 59999999999999999765
No 73
>PF12123 Amidase02_C: N-acetylmuramoyl-l-alanine amidase; InterPro: IPR021976 This domain is found in bacteria and viruses. This domain is about 50 amino acids in length. This domain is classified with the enzyme classification code 3.5.1.28 from EC. This domain is the C-terminal of the enzyme which hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides. ; PDB: 2L48_B.
Probab=29.55 E-value=66 Score=20.35 Aligned_cols=18 Identities=22% Similarity=0.553 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHcCCeEEE
Q 032925 110 SKEAAREFAERHGWEYVV 127 (130)
Q Consensus 110 SkE~Aiafaek~Gw~Y~V 127 (130)
.++.+-+|-+++||-|+|
T Consensus 28 ~L~k~~~wld~rgWwYe~ 45 (45)
T PF12123_consen 28 ELDKFTAWLDERGWWYEV 45 (45)
T ss_dssp HHHHHHHHHHHTT--EEE
T ss_pred HHHHHHHHHHhcCcEEeC
Confidence 367889999999999987
No 74
>PF03795 YCII: YCII-related domain; InterPro: IPR005545 The majority of proteins in this group contain a single copy of this domain, though it is also found as a repeat (e.g. in Q9AJZ7 from SWISSPROT). A strongly conserved histidine and a aspartate suggest that the domain has an enzymatic function. This entry also covers what was previously known as the DGPF domain (COG3795). Although its function is unknown it is found fused to a sigma-70 factor family domain in Q9A8M4 from SWISSPROT, suggesting that this domain may plays a role in transcription initiation. This domain is named after the most conserved motif in the alignment.; PDB: 1S7I_A 1MWQ_A.
Probab=29.04 E-value=36 Score=22.62 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=14.7
Q ss_pred ceeeeCCHHHHHHHHHH
Q 032925 104 AGLSFDSKEAAREFAER 120 (130)
Q Consensus 104 ~~L~F~SkE~Aiafaek 120 (130)
..+..+|+|+|+++|++
T Consensus 61 ~i~~a~s~e~A~~~~~~ 77 (95)
T PF03795_consen 61 IIVEAESREEAEEIAKE 77 (95)
T ss_dssp EEEEESSHHHHHHHHCT
T ss_pred EEEEeCCHHHHHHHHHh
Confidence 36789999999999975
No 75
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=28.98 E-value=63 Score=24.25 Aligned_cols=23 Identities=43% Similarity=0.671 Sum_probs=17.8
Q ss_pred CccC-CcCCceeeeCCHHHHHHHHHH
Q 032925 96 DPYA-NVGDAGLSFDSKEAAREFAER 120 (130)
Q Consensus 96 D~~s-qv~~~~L~F~SkE~Aiafaek 120 (130)
|+.+ +| -.|.|.|+|||-.|+++
T Consensus 79 D~R~~tV--yGLnF~Sk~ea~~F~~~ 102 (111)
T cd01206 79 DSRANTV--YGLGFSSEQQLTKFAEK 102 (111)
T ss_pred cccccee--eecccCCHHHHHHHHHH
Confidence 5542 44 36899999999999986
No 76
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=28.89 E-value=50 Score=27.15 Aligned_cols=18 Identities=11% Similarity=0.152 Sum_probs=16.3
Q ss_pred eCCHHHHHHHHHHcCCeE
Q 032925 108 FDSKEAAREFAERHGWEY 125 (130)
Q Consensus 108 F~SkE~Aiafaek~Gw~Y 125 (130)
..+++++++||++||+++
T Consensus 183 ma~~~~l~~fA~~h~l~~ 200 (218)
T PRK00910 183 MAKTPEIIAFGKLHNMPV 200 (218)
T ss_pred cCCHHHHHHHHHHcCCcE
Confidence 568999999999999987
No 77
>PTZ00056 glutathione peroxidase; Provisional
Probab=28.49 E-value=54 Score=25.53 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=18.5
Q ss_pred eCCHHHHHHHHHHcCCeEEEE
Q 032925 108 FDSKEAAREFAERHGWEYVVS 128 (130)
Q Consensus 108 F~SkE~Aiafaek~Gw~Y~V~ 128 (130)
+++.|++.+|++++|+.|.|.
T Consensus 88 ~d~~e~~~~f~~~~~~~fpvl 108 (199)
T PTZ00056 88 FPNTKDIRKFNDKNKIKYNFF 108 (199)
T ss_pred CCCHHHHHHHHHHcCCCceee
Confidence 478899999999999999873
No 78
>PF05406 WGR: WGR domain; InterPro: IPR008893 This domain is named after the most conserved central motif of the domain. It is found in a variety of polyA polymerases as well as the Escherichia coli molybdate metabolism regulator P33345 from SWISSPROT and other proteins of unknown function.The domain is found in isolation in proteins such as Q9JN21 from SWISSPROT and is between 70 and 80 residues in length. ; PDB: 2EOC_A 2RA8_A 4DQY_C 2CR9_A.
Probab=28.41 E-value=50 Score=22.02 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=25.1
Q ss_pred CCCcEEEecCCCCcc-CCCcCccCCCCccCCcCCceeeeCCHHHHHHHHHH
Q 032925 71 LGRWKINFMSTQKWE-NPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAER 120 (130)
Q Consensus 71 t~~W~LeF~~~~~w~-nPLMGWtsS~D~~sqv~~~~L~F~SkE~Aiafaek 120 (130)
.+.|.|+..+...|. --==|-.++. ...+ .-.|+|.|+|+++.++
T Consensus 19 ~kfY~iql~~~~~~~v~~~wGRiG~~-gq~~----~~~f~s~~eA~~~f~~ 64 (81)
T PF05406_consen 19 NKFYRIQLLPDLEWVVFRRWGRIGSK-GQTR----IKPFDSEEEAIKEFEK 64 (81)
T ss_dssp EEEEEEEEEEETTEEEEEEEEETTSS-EEEE----EEEESSHHHHHHHHHH
T ss_pred EEEEEEEEEeCCCeEEEEEECCCCCc-CcEE----EEeCCCHHHHHHHHHH
Confidence 456777775432110 0011334444 3333 4489999999998875
No 79
>PF02244 Propep_M14: Carboxypeptidase activation peptide; InterPro: IPR003146 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The peptidases are synthesised as inactive molecules, zymogens, with propeptides that must be removed by proteolytic cleavage to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Members of this propeptide family are found in the metallocarboxypeptidases: A1, A2 [], A3, A4, A5, A6, U, insect gut carboxypeptidase and B [], and and are associated with peptidases belonging to MEROPS peptidase family M14A. Carboxypeptidases are found in abundance in pancreatic secretions. The pro-segment moiety (activation peptide) accounts for up to a quarter of the total length of the peptidase.; GO: 0004180 carboxypeptidase activity, 0006508 proteolysis; PDB: 3D68_C 3D67_B 3D66_A 1PBA_A 3GLJ_A 1NSA_A 1KWM_A 2BOA_B 1PYT_A 1JQG_A ....
Probab=28.15 E-value=1e+02 Score=19.68 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=20.9
Q ss_pred eeeeCCHHHHHHHHHHcCCeEEEEE
Q 032925 105 GLSFDSKEAAREFAERHGWEYVVSV 129 (130)
Q Consensus 105 ~L~F~SkE~Aiafaek~Gw~Y~V~~ 129 (130)
.+.=...+....+.+++|++|+|..
T Consensus 39 ~V~p~~~~~f~~~L~~~~i~~~v~i 63 (74)
T PF02244_consen 39 MVPPEKLEEFEELLKEHGIEYEVLI 63 (74)
T ss_dssp EEEGGGHHHHHHHHHHTT-EEEEEE
T ss_pred EECHHHHHHHHHHHHHCCCcEEEEe
Confidence 6677788999999999999999964
No 80
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=27.85 E-value=53 Score=27.28 Aligned_cols=18 Identities=11% Similarity=0.195 Sum_probs=16.3
Q ss_pred eCCHHHHHHHHHHcCCeE
Q 032925 108 FDSKEAAREFAERHGWEY 125 (130)
Q Consensus 108 F~SkE~Aiafaek~Gw~Y 125 (130)
...++++++||++||+.+
T Consensus 187 ma~~~~l~~fA~~~~l~i 204 (230)
T PRK00014 187 MMRGASLERYAAKEGLVA 204 (230)
T ss_pred ccCHHHHHHHHHHcCCcE
Confidence 567899999999999987
No 81
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=27.73 E-value=46 Score=29.54 Aligned_cols=14 Identities=29% Similarity=0.755 Sum_probs=12.5
Q ss_pred HHHHHHcCCeEEEE
Q 032925 115 REFAERHGWEYVVS 128 (130)
Q Consensus 115 iafaek~Gw~Y~V~ 128 (130)
..||+.+||.++|.
T Consensus 139 ~rYAe~kgWk~ei~ 152 (363)
T COG0216 139 SRYAESKGWKVEIL 152 (363)
T ss_pred HHHHHhCCCEEEEe
Confidence 37999999999985
No 82
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.72 E-value=48 Score=27.44 Aligned_cols=106 Identities=20% Similarity=0.208 Sum_probs=60.1
Q ss_pred CccccccccccccccccccccccCCCccccc-ce--EEEecCC-----CCCCCCCCCCCCCcEEEecCCCCcc-CCCcCc
Q 032925 21 PFSRAFSADALVEVKPGEIGMVSGIPEEHLR-RR--VVIYTPA-----RTATQQGSGKLGRWKINFMSTQKWE-NPLMGW 91 (130)
Q Consensus 21 ~~~r~fs~d~~~~~~~~e~~~vSG~P~e~~~-r~--vrIY~Pa-----k~amQSG~~~t~~W~LeF~~~~~w~-nPLMGW 91 (130)
++.++|.....++...-.+|+--|+..-+.. |. +.|+-.+ ++.+-|--.....=.|-|+-..+-. |.|--|
T Consensus 21 clllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~w 100 (216)
T KOG0098|consen 21 CLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSW 100 (216)
T ss_pred HHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHH
Confidence 4578888877777777778888888876664 43 4577532 2222222222334456666543322 666666
Q ss_pred cCCCCccCCcCCce-----------eeeCCHHHHHHHHHHcCCeEE
Q 032925 92 TSTGDPYANVGDAG-----------LSFDSKEAAREFAERHGWEYV 126 (130)
Q Consensus 92 tsS~D~~sqv~~~~-----------L~F~SkE~Aiafaek~Gw~Y~ 126 (130)
-.-.-..++-+.+- -+==++||-.+||++||+-|-
T Consensus 101 L~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifm 146 (216)
T KOG0098|consen 101 LEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFM 146 (216)
T ss_pred HHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceee
Confidence 43211111000000 012378999999999999773
No 83
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=27.63 E-value=1.2e+02 Score=25.35 Aligned_cols=24 Identities=21% Similarity=0.520 Sum_probs=19.9
Q ss_pred eeeeCCHHHHHHHHHHcCCeEEEEE
Q 032925 105 GLSFDSKEAAREFAERHGWEYVVSV 129 (130)
Q Consensus 105 ~L~F~SkE~Aiafaek~Gw~Y~V~~ 129 (130)
...|. ++++.+|++++|+++.|..
T Consensus 209 g~~fg-~~~~~~Fl~~n~l~~iiR~ 232 (285)
T cd07415 209 GYLFG-QDVVEEFNHNNGLTLICRA 232 (285)
T ss_pred ccccC-HHHHHHHHHHCCCeEEEEc
Confidence 45665 8899999999999998863
No 84
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=27.51 E-value=93 Score=19.89 Aligned_cols=22 Identities=14% Similarity=0.077 Sum_probs=18.3
Q ss_pred eCCHHHHHHHHHHcCCeEEEEE
Q 032925 108 FDSKEAAREFAERHGWEYVVSV 129 (130)
Q Consensus 108 F~SkE~Aiafaek~Gw~Y~V~~ 129 (130)
=.+...-+.||++.|++|.|.+
T Consensus 37 ~~~~~~~~~~a~~~g~~~~iii 58 (91)
T cd00860 37 NEKLGKKIREAQLQKIPYILVV 58 (91)
T ss_pred CCCHHHHHHHHHHcCCCEEEEE
Confidence 3577889999999999998764
No 85
>PF14791 DNA_pol_B_thumb: DNA polymerase beta thumb ; PDB: 1HUZ_A 3K75_D 1HUO_A 2BPC_A 1RPL_A 1NOM_A 1ZQX_A 1ZQU_A 1ZQZ_A 1ZQV_A ....
Probab=27.05 E-value=7.2 Score=25.90 Aligned_cols=12 Identities=17% Similarity=0.185 Sum_probs=6.9
Q ss_pred CcCccCCCCccC
Q 032925 88 LMGWTSTGDPYA 99 (130)
Q Consensus 88 LMGWtsS~D~~s 99 (130)
|.+||||.+-..
T Consensus 2 ll~~TGs~~fnr 13 (64)
T PF14791_consen 2 LLYFTGSKEFNR 13 (64)
T ss_dssp HHHHHS-HHHHH
T ss_pred cccccCCHHHHH
Confidence 457777766543
No 86
>cd07202 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase A2; catalytic domain; Ca-independent. Group IVC cPLA2, a small 61 kDa protein, is a single domain alpha/beta hydrolase. It lacks a C2 domain; therefore, it has no Ca-dependence. Group IVC cPLA2 is also referred to as cPLA2-gamma. The cPLA2-gamma enzyme is predominantly found in cardiac and skeletal muscles, and to a lesser extent in the brain. Human cPLA2-gamma is approximately 30% identical to cPLA2-alpha. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 be
Probab=26.91 E-value=30 Score=31.19 Aligned_cols=18 Identities=17% Similarity=0.584 Sum_probs=15.9
Q ss_pred eCCHHHHHHHHHHcCCeE
Q 032925 108 FDSKEAAREFAERHGWEY 125 (130)
Q Consensus 108 F~SkE~Aiafaek~Gw~Y 125 (130)
|.+...|.+||++|||+|
T Consensus 321 f~~l~~~~~~c~~~~ipf 338 (430)
T cd07202 321 FETIKDTAEYCRKHNIPF 338 (430)
T ss_pred hHHHHHHHHHHHHcCCCC
Confidence 567889999999999987
No 87
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=26.30 E-value=60 Score=27.61 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=18.2
Q ss_pred eeCCHHHHHHHHHHcCCeEE
Q 032925 107 SFDSKEAAREFAERHGWEYV 126 (130)
Q Consensus 107 ~F~SkE~Aiafaek~Gw~Y~ 126 (130)
.|-|+|+|.+.++++||.|.
T Consensus 131 ~~y~~~~a~~~~~~~~~~~~ 150 (310)
T TIGR00746 131 PFYTEEEAKRLAAEKGWIVK 150 (310)
T ss_pred CCcCHHHHHHHHHHcCCeEe
Confidence 69999999999999999764
No 88
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=25.77 E-value=67 Score=21.51 Aligned_cols=16 Identities=38% Similarity=0.545 Sum_probs=12.7
Q ss_pred HHHHHHHHHHcCCeEE
Q 032925 111 KEAAREFAERHGWEYV 126 (130)
Q Consensus 111 kE~Aiafaek~Gw~Y~ 126 (130)
.++|++||+++|+...
T Consensus 44 ~~~~l~~a~~~~~kv~ 59 (78)
T PF14542_consen 44 VEAALDYARENGLKVV 59 (78)
T ss_dssp HHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHCCCEEE
Confidence 4789999999998764
No 89
>PF09691 PulS_OutS: Bacterial chaperone lipoprotein (PulS_OutS); InterPro: IPR019114 This family comprises lipoproteins from gamma proteobacterial species: pullulanase secretion protein PulS protein of Klebsiella pneumoniae (P20440 from SWISSPROT), the lipoprotein OutS protein of Erwinia chrysanthemi (Q01567 from SWISSPROT) and the functionally uncharacterised type II secretion protein EtpO (Q7BSV3 from SWISSPROT) from Escherichia coli O157:H7. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family. In addition to the PulS/OutS proteins this entry also includes other functionally uncharacterised proteins, such as YacC from Escherischia coli (P0AA95 from SWISSPROT).; PDB: 3SOL_A 3UYM_A 3UTK_A 4A56_A.
Probab=25.74 E-value=45 Score=24.64 Aligned_cols=14 Identities=43% Similarity=0.840 Sum_probs=10.3
Q ss_pred HHHHHHHHHcCCeE
Q 032925 112 EAAREFAERHGWEY 125 (130)
Q Consensus 112 E~Aiafaek~Gw~Y 125 (130)
-.||.||+++||+.
T Consensus 53 ~~a~~~A~~~gWd~ 66 (109)
T PF09691_consen 53 RAAVIFAQQRGWDT 66 (109)
T ss_dssp HHHHHHHHHTT--C
T ss_pred HHHHHHHHHcCCCc
Confidence 37999999999974
No 90
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=25.52 E-value=96 Score=20.27 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=18.1
Q ss_pred eeee--CCHHHHHHHHHHcCCeEE
Q 032925 105 GLSF--DSKEAAREFAERHGWEYV 126 (130)
Q Consensus 105 ~L~F--~SkE~Aiafaek~Gw~Y~ 126 (130)
.++| ..+|.++++.+++|+.|+
T Consensus 44 al~~~~~d~~~i~~~l~~~~i~~~ 67 (73)
T PF11823_consen 44 ALRFEPEDLEKIKEILEENGIEYE 67 (73)
T ss_pred EEEEChhhHHHHHHHHHHCCCCee
Confidence 4454 678999999999999886
No 91
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=25.29 E-value=89 Score=21.57 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=20.7
Q ss_pred eeeeCCHHHHHHHHHHcCCeEEEE
Q 032925 105 GLSFDSKEAAREFAERHGWEYVVS 128 (130)
Q Consensus 105 ~L~F~SkE~Aiafaek~Gw~Y~V~ 128 (130)
.+.-++.+++.+|++++|+.|.+.
T Consensus 62 ~is~d~~~~~~~~~~~~~~~~~~l 85 (140)
T cd03017 62 GVSPDSVESHAKFAEKYGLPFPLL 85 (140)
T ss_pred EEcCCCHHHHHHHHHHhCCCceEE
Confidence 666789999999999999998764
No 92
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=25.19 E-value=1.3e+02 Score=25.68 Aligned_cols=24 Identities=17% Similarity=0.462 Sum_probs=19.3
Q ss_pred eeeeCCHHHHHHHHHHcCCeEEEEE
Q 032925 105 GLSFDSKEAAREFAERHGWEYVVSV 129 (130)
Q Consensus 105 ~L~F~SkE~Aiafaek~Gw~Y~V~~ 129 (130)
...|. .++..+||++||+++.|..
T Consensus 248 g~~FG-~~~~~~Fl~~n~l~~IIR~ 271 (321)
T cd07420 248 GCYFG-PDVTSKVLQKHGLSLLIRS 271 (321)
T ss_pred ccccC-HHHHHHHHHHCCCcEEEEc
Confidence 45565 7777899999999998863
No 93
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=24.68 E-value=38 Score=30.18 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=18.9
Q ss_pred eeCCHHHHHHHHHHcCCeEEE
Q 032925 107 SFDSKEAAREFAERHGWEYVV 127 (130)
Q Consensus 107 ~F~SkE~Aiafaek~Gw~Y~V 127 (130)
+|.-++|+++||++||++.-|
T Consensus 154 rf~Gr~Dl~eYakq~giPvpv 174 (412)
T KOG1706|consen 154 RFKGRKDLLEYAKQHGIPVPV 174 (412)
T ss_pred hhcCchHHHHHHHhcCCCccc
Confidence 699999999999999998655
No 94
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=24.56 E-value=99 Score=19.58 Aligned_cols=19 Identities=42% Similarity=0.651 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHcCCeEEEE
Q 032925 110 SKEAAREFAERHGWEYVVS 128 (130)
Q Consensus 110 SkE~Aiafaek~Gw~Y~V~ 128 (130)
+.++=.+||+++|+.+++.
T Consensus 37 s~~~i~~~~~~~G~~~~~~ 55 (67)
T cd03421 37 AKENVSRFAESRGYEVSVE 55 (67)
T ss_pred HHHHHHHHHHHcCCEEEEE
Confidence 3468889999999999764
No 95
>cd06576 PASTA_Pbp2x-like_1 PASTA domain of PBP2x-like proteins, first repeat. Penicillin-binding proteins (PBPs) are the major targets for beta-lactam antibiotics, like penicillins and cephalosporins. Beta-lactam antibiotics specifically inhibit transpeptidase activity by acylating the active site serine. PBPs catalyze key steps in the synthesis of the peptidoglycan, such as the interconnecting of glycan chains (polymers of N-glucosamine and N-acetylmuramic acid residues) and the cross-linking (transpeptidation) of short stem peptides, which are connected to glycan chains. Peptidoglycan is essential in cell division and protects bacteria from osmotic shock and lysis. PBP2x is one of the two monofunctional high molecular mass PBPs in Streptococcus pneumoniae and has been seen as the primary PBP target in beta-lactam-resistant strains. The PASTA domain is found at the C-termini of several PBPs and bacterial serine/threonine kinases. The name PASTA is derived from PBP and Serine/Threonine
Probab=24.36 E-value=1.2e+02 Score=17.41 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHcCCeEEEE
Q 032925 109 DSKEAAREFAERHGWEYVVS 128 (130)
Q Consensus 109 ~SkE~Aiafaek~Gw~Y~V~ 128 (130)
.+.++|.+.+++.|+.+++.
T Consensus 8 ~~~~~a~~~l~~~g~~~~~~ 27 (55)
T cd06576 8 KSVEEAKKELKEAGLQPVVI 27 (55)
T ss_pred CCHHHHHHHHHHCCCEEEEe
Confidence 57899999999999988653
No 96
>COG2154 Pterin-4a-carbinolamine dehydratase [Coenzyme metabolism]
Probab=24.16 E-value=77 Score=23.22 Aligned_cols=32 Identities=25% Similarity=0.445 Sum_probs=25.5
Q ss_pred cCCCcCccCCCC--ccCCcCCceeeeCCHHHHHHHHHH
Q 032925 85 ENPLMGWTSTGD--PYANVGDAGLSFDSKEAAREFAER 120 (130)
Q Consensus 85 ~nPLMGWtsS~D--~~sqv~~~~L~F~SkE~Aiafaek 120 (130)
...|-||.-..| -+. -..+|++-.+|++|..+
T Consensus 15 l~~l~gW~l~~~~~~l~----r~f~FknF~~a~~F~~~ 48 (101)
T COG2154 15 LRALPGWELADDGAKLT----RTFKFKNFKQAIAFVNR 48 (101)
T ss_pred hcCCCCCEEecCcceEE----EEEEcCCHHHHHHHHHH
Confidence 368999999888 332 27899999999999654
No 97
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.99 E-value=57 Score=26.70 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=17.5
Q ss_pred eeCCHHHHHHHHHHcCCeEE
Q 032925 107 SFDSKEAAREFAERHGWEYV 126 (130)
Q Consensus 107 ~F~SkE~Aiafaek~Gw~Y~ 126 (130)
+--+.+.|++.|+|.|++|.
T Consensus 140 R~Vs~~qa~~La~kyglPYf 159 (219)
T KOG0081|consen 140 RVVSEDQAAALADKYGLPYF 159 (219)
T ss_pred hhhhHHHHHHHHHHhCCCee
Confidence 44588999999999999995
No 98
>PF02177 APP_N: Amyloid A4 N-terminal heparin-binding; InterPro: IPR015849 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. This entry represents a heparin-binding domain found at the N-terminal of the extracellular domain, which is itself found at the N-terminal of amyloidogenic glycoproteins such as amyloid-beta precursor protein (APP, or A4). The core of the heparin-binding domain has an unusual disulphide-rich fold, consisting of a beta-x-alpha-beta-loop-beta topology []. More information about these protein can be found at Protein of the Month: Amyloid-beta Precursor Protein [].; GO: 0005488 binding, 0016021 integral to membrane; PDB: 3KTM_E 1MWP_A 2FKL_A 1OWT_A.
Probab=23.54 E-value=63 Score=23.79 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=15.4
Q ss_pred eeeeCCHHHHHHHHHHcCCeEEE
Q 032925 105 GLSFDSKEAAREFAERHGWEYVV 127 (130)
Q Consensus 105 ~L~F~SkE~Aiafaek~Gw~Y~V 127 (130)
.--|.++++.++||++.--++.|
T Consensus 31 ~~C~~~k~eIL~YCrkvYP~l~I 53 (102)
T PF02177_consen 31 ASCLKDKEEILKYCRKVYPELQI 53 (102)
T ss_dssp -B---SHHHHHHHHHHHSTTS-E
T ss_pred ccccCChHHHHHHHHHhCCCCce
Confidence 45899999999999998766655
No 99
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=23.45 E-value=75 Score=22.06 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHcCCeEEEE
Q 032925 109 DSKEAAREFAERHGWEYVVS 128 (130)
Q Consensus 109 ~SkE~Aiafaek~Gw~Y~V~ 128 (130)
++.|+..+|++++|+.|.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~p~~ 90 (126)
T cd03012 71 RDLANVKSAVLRYGITYPVA 90 (126)
T ss_pred cCHHHHHHHHHHcCCCCCEE
Confidence 57899999999999998764
No 100
>TIGR03728 glyco_access_1 glycosyltransferase, SP_1767 family. Members of this protein family are putative glycosyltransferases. Some members are found close to genes for the accessory secretory (SecA2) system, and are suggested by Partial Phylogenetic Profiling to correlate with SecA2 systems. Glycosylation, therefore, may occur in the cytosol prior to secretion.
Probab=23.45 E-value=41 Score=28.64 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=20.9
Q ss_pred ccccCCCccccc--ceE-EEecCCCCCCC
Q 032925 40 GMVSGIPEEHLR--RRV-VIYTPARTATQ 65 (130)
Q Consensus 40 ~~vSG~P~e~~~--r~v-rIY~Pak~amQ 65 (130)
...+|+-.|++. +.+ |||-|+|+|=+
T Consensus 143 ~sR~GvGndLF~naksI~rIicPsknAy~ 171 (265)
T TIGR03728 143 TSRSGVGNDLFDNAKSIKRIICPSKNAFS 171 (265)
T ss_pred cccccCchhhhhCcccEEEEeCCChhHHH
Confidence 357899999984 666 89999999854
No 101
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=23.36 E-value=44 Score=29.58 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCCeEEE
Q 032925 111 KEAAREFAERHGWEYVV 127 (130)
Q Consensus 111 kE~Aiafaek~Gw~Y~V 127 (130)
+|+.|+||++||++..+
T Consensus 147 R~~~i~ya~~~gIpv~~ 163 (388)
T PF00764_consen 147 REEEIEYAKKHGIPVPV 163 (388)
T ss_dssp HHHHHHHHHHTT----S
T ss_pred HHHHHHHHHHcCCCCCC
Confidence 99999999999997653
No 102
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=23.29 E-value=1.7e+02 Score=24.92 Aligned_cols=23 Identities=26% Similarity=0.677 Sum_probs=19.4
Q ss_pred eeeeCCHHHHHHHHHHcCCeEEEE
Q 032925 105 GLSFDSKEAAREFAERHGWEYVVS 128 (130)
Q Consensus 105 ~L~F~SkE~Aiafaek~Gw~Y~V~ 128 (130)
...| ..++..+||++||+++.|.
T Consensus 228 g~~f-g~~~~~~Fl~~n~l~~iiR 250 (316)
T cd07417 228 GCQF-GPDVTKRFLEENNLEYIIR 250 (316)
T ss_pred ceEe-CHHHHHHHHHHcCCcEEEE
Confidence 5567 7778889999999999885
No 103
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=23.03 E-value=1.1e+02 Score=21.20 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCeEEEEE
Q 032925 111 KEAAREFAERHGWEYVVSV 129 (130)
Q Consensus 111 kE~Aiafaek~Gw~Y~V~~ 129 (130)
.+...++|+++|++|+|..
T Consensus 16 ~~ki~~~~~~~~~~~~v~~ 34 (96)
T cd05564 16 VKKMKKAAEKRGIDAEIEA 34 (96)
T ss_pred HHHHHHHHHHCCCceEEEE
Confidence 4577899999999999875
No 104
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=23.03 E-value=57 Score=27.28 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=18.3
Q ss_pred eeeeCCHHHHHHHHHHcCCeEE
Q 032925 105 GLSFDSKEAAREFAERHGWEYV 126 (130)
Q Consensus 105 ~L~F~SkE~Aiafaek~Gw~Y~ 126 (130)
+..|+..++.++||+++|+...
T Consensus 55 ~~~~~~~D~~~~~a~~~g~~vr 76 (320)
T PF00331_consen 55 RFNFESADAILDWARENGIKVR 76 (320)
T ss_dssp BEE-HHHHHHHHHHHHTT-EEE
T ss_pred ccCccchhHHHHHHHhcCccee
Confidence 6799999999999999999875
No 105
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=22.67 E-value=77 Score=20.46 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=18.0
Q ss_pred eeCCHHHHHHHHHHcCCeEEE
Q 032925 107 SFDSKEAAREFAERHGWEYVV 127 (130)
Q Consensus 107 ~F~SkE~Aiafaek~Gw~Y~V 127 (130)
...+.|+-|++|+.+|+++..
T Consensus 23 ~~~~~e~~~~lA~~~Gf~ft~ 43 (64)
T TIGR03798 23 AAEDPEDRVAIAKEAGFEFTG 43 (64)
T ss_pred HcCCHHHHHHHHHHcCCCCCH
Confidence 467899999999999998753
No 106
>PRK12686 carbamate kinase; Reviewed
Probab=21.93 E-value=67 Score=27.56 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=17.9
Q ss_pred eeCCHHHHHHHHHHcCCeEE
Q 032925 107 SFDSKEAAREFAERHGWEYV 126 (130)
Q Consensus 107 ~F~SkE~Aiafaek~Gw~Y~ 126 (130)
.|-|+|+|...|+++||.+.
T Consensus 132 ~~~~~~~a~~~~~~~g~~~~ 151 (312)
T PRK12686 132 PFYTEEEAKQQAEQPGSTFK 151 (312)
T ss_pred CccCHHHHHHHHHHcCCccc
Confidence 59999999999999999654
No 107
>TIGR01004 PulS_OutS lipoprotein, PulS/OutS family. This family comprises lipoproteins from four gamma proteobacterial species: PulS protein of Klebsiella pneumoniae, the OutS protein of Erwinia chrysanthemi and Pectobacterium chrysanthemi, and the functionally uncharacterized E. coli protein EtpO. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family.
Probab=21.80 E-value=69 Score=24.55 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=10.9
Q ss_pred HHHHHHHHcCCe
Q 032925 113 AAREFAERHGWE 124 (130)
Q Consensus 113 ~Aiafaek~Gw~ 124 (130)
.||.||+.+||+
T Consensus 70 aai~~A~~~gWd 81 (128)
T TIGR01004 70 TANNVAIGKGWD 81 (128)
T ss_pred HHHHHHHHcCCc
Confidence 799999999996
No 108
>PF10009 DUF2252: Uncharacterized protein conserved in bacteria (DUF2252); InterPro: IPR018721 This domain has no known function.
Probab=21.64 E-value=52 Score=28.67 Aligned_cols=42 Identities=21% Similarity=0.401 Sum_probs=26.8
Q ss_pred CCccCCCcCccCCCCc---cCCcCCceeeeC----CHHHHHHHHHHcCC
Q 032925 82 QKWENPLMGWTSTGDP---YANVGDAGLSFD----SKEAAREFAERHGW 123 (130)
Q Consensus 82 ~~w~nPLMGWtsS~D~---~sqv~~~~L~F~----SkE~Aiafaek~Gw 123 (130)
+.-.||++||++-++- .-|..+.+.+|+ +.++..+||+-.|+
T Consensus 287 q~~sD~~LG~~~~~g~~f~VRql~p~k~~~d~~~l~~~~~~~~a~~~g~ 335 (385)
T PF10009_consen 287 QAASDPFLGWVTIDGRDFYVRQLRPMKGSVDLEDLDPEELQDYARLCGR 335 (385)
T ss_pred hhcCCcccCceeeCCceEEEEECCCcCCCcChhhCCHHHHHHHHHHHHH
Confidence 3557999999997661 122222233333 67888899887665
No 109
>cd00488 PCD_DCoH PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon cancer carc
Probab=21.64 E-value=1.1e+02 Score=20.25 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=14.2
Q ss_pred eeeeCCHHHHHHHHHH
Q 032925 105 GLSFDSKEAAREFAER 120 (130)
Q Consensus 105 ~L~F~SkE~Aiafaek 120 (130)
..+|++-.+|++|+.+
T Consensus 13 ~f~f~~f~~a~~f~~~ 28 (75)
T cd00488 13 TFKFKDFKEAIAFVNR 28 (75)
T ss_pred EEEcCCHHHHHHHHHH
Confidence 7889999999999765
No 110
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=21.44 E-value=68 Score=23.21 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=17.0
Q ss_pred eCCHHHHHHHHHH-cCCeEEE
Q 032925 108 FDSKEAAREFAER-HGWEYVV 127 (130)
Q Consensus 108 F~SkE~Aiafaek-~Gw~Y~V 127 (130)
.++.|+..+|+++ +|+.|.+
T Consensus 71 ~d~~~~~~~f~~~~~~~~fp~ 91 (153)
T TIGR02540 71 PDSSKEIESFARRNYGVTFPM 91 (153)
T ss_pred CCCHHHHHHHHHHhcCCCCCc
Confidence 3778999999986 8999876
No 111
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=21.23 E-value=1.7e+02 Score=25.12 Aligned_cols=41 Identities=22% Similarity=0.563 Sum_probs=27.6
Q ss_pred CCccCCC---cCccCCCCccCCcCCceeeeCCHHHHHHHHHHcCCeEEEEE
Q 032925 82 QKWENPL---MGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVSV 129 (130)
Q Consensus 82 ~~w~nPL---MGWtsS~D~~sqv~~~~L~F~SkE~Aiafaek~Gw~Y~V~~ 129 (130)
--|-||. -||.-|. . +....| .+++..+||++||+++.|..
T Consensus 206 llWSDP~~~~~~~~~s~---R---G~g~~F-G~~~~~~Fl~~n~l~~IiR~ 249 (320)
T PTZ00480 206 LLWSDPDKDVQGWADNE---R---GVSYVF-SQEIVQVFLKKHELDLICRA 249 (320)
T ss_pred eeecCcccccCCCccCC---C---CCcccc-CHHHHHHHHHhCCCcEEEEc
Confidence 3677775 3665431 1 123445 57899999999999998863
No 112
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=21.20 E-value=68 Score=28.64 Aligned_cols=23 Identities=13% Similarity=0.342 Sum_probs=19.9
Q ss_pred eeCCHHHHHHHHHHcCCeEEEEE
Q 032925 107 SFDSKEAAREFAERHGWEYVVSV 129 (130)
Q Consensus 107 ~F~SkE~Aiafaek~Gw~Y~V~~ 129 (130)
++.|...||+.|+++|++|.+-+
T Consensus 70 ~~~Tv~kaV~i~kee~idflLAV 92 (384)
T COG1979 70 RLETLMKAVEICKEENIDFLLAV 92 (384)
T ss_pred hHHHHHHHHHHHHHcCceEEEEe
Confidence 56789999999999999997643
No 113
>cd06575 PASTA_Pbp2x-like_2 PASTA domain of PBP2x-like proteins, second repeat. Penicillin-binding proteins (PBPs) are the major targets for beta-lactam antibiotics, like penicillins and cephalosporins. Beta-lactam antibiotics specifically inhibit transpeptidase activity by acylating the active site serine. PBPs catalyze key steps in the synthesis of the peptidoglycan, such as the interconnecting of glycan chains (polymers of N-glucosamine and N-acetylmuramic acid residues) and the cross-linking (transpeptidation) of short stem peptides, which are attached to glycan chains. Peptidoglycan is essential in cell division and protects bacteria from osmotic shock and lysis. PBP2x is one of the two monofunctional high molecular mass PBPs in Streptococcus pneumoniae and has been seen as the primary PBP target in beta-lactam-resistant strains. The PASTA domain is found at the C-termini of several PBPs and bacterial serine/threonine kinases. The name PASTA is derived from PBP and Serine/Threonine
Probab=21.15 E-value=1.5e+02 Score=16.67 Aligned_cols=20 Identities=30% Similarity=0.146 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHcCCeEEEE
Q 032925 109 DSKEAAREFAERHGWEYVVS 128 (130)
Q Consensus 109 ~SkE~Aiafaek~Gw~Y~V~ 128 (130)
.+.++|.+..++.|+.+.+.
T Consensus 8 ~~~~~a~~~l~~~g~~~~~~ 27 (54)
T cd06575 8 WSKRDALKLLELLGLKVKFS 27 (54)
T ss_pred CCHHHHHHHHHHCCCeEEEe
Confidence 57899999999999987653
No 114
>PF04895 DUF651: Archaeal protein of unknown function (DUF651); InterPro: IPR006979 This conserved region is found in the C-terminal region of a number of conserved archaeal proteins of unknown function.
Probab=21.10 E-value=70 Score=23.69 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=14.7
Q ss_pred eeeeCCHHHHHHHHHHc
Q 032925 105 GLSFDSKEAAREFAERH 121 (130)
Q Consensus 105 ~L~F~SkE~Aiafaek~ 121 (130)
-..|+|.++|+.|+.+.
T Consensus 67 p~~f~~l~eAl~~~~~~ 83 (110)
T PF04895_consen 67 PEKFETLEEALEYVSSR 83 (110)
T ss_pred CcccCCHHHHHHHHHHH
Confidence 56999999999999764
No 115
>PRK13820 argininosuccinate synthase; Provisional
Probab=21.08 E-value=65 Score=28.43 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHcCCeEEE
Q 032925 110 SKEAAREFAERHGWEYVV 127 (130)
Q Consensus 110 SkE~Aiafaek~Gw~Y~V 127 (130)
||++-++||+++|++|..
T Consensus 148 tK~ei~~ya~~~gip~~~ 165 (394)
T PRK13820 148 TREWEIEYAKEKGIPVPV 165 (394)
T ss_pred CHHHHHHHHHHcCCCCCc
Confidence 999999999999998854
No 116
>PRK00509 argininosuccinate synthase; Provisional
Probab=21.04 E-value=72 Score=28.25 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=17.2
Q ss_pred eeCCHHHHHHHHHHcCCeEE
Q 032925 107 SFDSKEAAREFAERHGWEYV 126 (130)
Q Consensus 107 ~F~SkE~Aiafaek~Gw~Y~ 126 (130)
.|.||++-++||+++|++..
T Consensus 148 ~~~tK~eir~~A~~~Gipv~ 167 (399)
T PRK00509 148 DLKSREELIAYAEEHGIPIP 167 (399)
T ss_pred CCCCHHHHHHHHHHcCCCCC
Confidence 45599999999999999864
No 117
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=20.97 E-value=1.4e+02 Score=18.67 Aligned_cols=19 Identities=21% Similarity=0.111 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHcCCeEEE
Q 032925 109 DSKEAAREFAERHGWEYVV 127 (130)
Q Consensus 109 ~SkE~Aiafaek~Gw~Y~V 127 (130)
.+.++.++.|+++|++...
T Consensus 15 ~~~~~~~~~a~~~g~~~v~ 33 (67)
T smart00481 15 LSPEELVKRAKELGLKAIA 33 (67)
T ss_pred CCHHHHHHHHHHcCCCEEE
Confidence 3689999999999998764
No 118
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=20.90 E-value=94 Score=21.77 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=15.9
Q ss_pred HHHHHHHHHHcCCeEEEE
Q 032925 111 KEAAREFAERHGWEYVVS 128 (130)
Q Consensus 111 kE~Aiafaek~Gw~Y~V~ 128 (130)
-.+||++-++.|++|+|-
T Consensus 19 V~~~i~~i~~sgl~y~v~ 36 (92)
T PF01910_consen 19 VAEAIEVIKESGLKYEVG 36 (92)
T ss_dssp HHHHHHHHHTSSSEEEEE
T ss_pred HHHHHHHHHHcCCceEEc
Confidence 378999999999999984
No 119
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=20.83 E-value=96 Score=18.44 Aligned_cols=17 Identities=18% Similarity=0.583 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHcCCeEE
Q 032925 110 SKEAAREFAERHGWEYV 126 (130)
Q Consensus 110 SkE~Aiafaek~Gw~Y~ 126 (130)
+.+.|+.|-++++|+.+
T Consensus 14 ~~~~A~~~L~~~~wdle 30 (43)
T PF14555_consen 14 DEDVAIQYLEANNWDLE 30 (43)
T ss_dssp SHHHHHHHHHHTTT-HH
T ss_pred CHHHHHHHHHHcCCCHH
Confidence 67999999999999853
No 120
>cd03593 CLECT_NK_receptors_like C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs). CLECT_NK_receptors_like: C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs), including proteins similar to oxidized low density lipoprotein (OxLDL) receptor (LOX-1), CD94, CD69, NKG2-A and -D, osteoclast inhibitory lectin (OCIL), dendritic cell-associated C-type lectin-1 (dectin-1), human myeloid inhibitory C-type lectin-like receptor (MICL), mast cell-associated functional antigen (MAFA), killer cell lectin-like receptors: subfamily F, member 1 (KLRF1) and subfamily B, member 1 (KLRB1), and lys49 receptors. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. NKRs are variously associated with activation or inhibition of natural killer (NK) cells. Activating NKRs stimulate cytolysis by NK cells of virally infected or transformed cells; inhibitory NKRs block cytolysis up
Probab=20.81 E-value=71 Score=21.39 Aligned_cols=17 Identities=6% Similarity=0.059 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHcCCeE
Q 032925 109 DSKEAAREFAERHGWEY 125 (130)
Q Consensus 109 ~SkE~Aiafaek~Gw~Y 125 (130)
.|=++|..+|+++|=..
T Consensus 20 ~~w~~A~~~C~~~g~~L 36 (116)
T cd03593 20 KTWNESKEACSSKNSSL 36 (116)
T ss_pred CCHHHHHHHHHhCCCcE
Confidence 56789999999998543
No 121
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=20.62 E-value=1.4e+02 Score=22.29 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=24.9
Q ss_pred cCccCCCCccCCcCCceeeeCCHHHHHHHHHH--cCCeEEEE
Q 032925 89 MGWTSTGDPYANVGDAGLSFDSKEAAREFAER--HGWEYVVS 128 (130)
Q Consensus 89 MGWtsS~D~~sqv~~~~L~F~SkE~Aiafaek--~Gw~Y~V~ 128 (130)
...-.+|||+ .|.+--.-++.+++ .|++++|.
T Consensus 79 V~~l~~GDP~--------~~~~~~~l~~~l~~~~~gi~v~ii 112 (210)
T PF00590_consen 79 VVVLVSGDPL--------FFSTGSYLVRALRAEERGIEVEII 112 (210)
T ss_dssp EEEEESBSTT--------SSSSHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEeCCCCCC--------cccHHHHHHHHHHhhcCCCceEEE
Confidence 5667789996 57777777777777 99999885
No 122
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=20.61 E-value=1.6e+02 Score=18.19 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHcCCeEEEE
Q 032925 110 SKEAAREFAERHGWEYVVS 128 (130)
Q Consensus 110 SkE~Aiafaek~Gw~Y~V~ 128 (130)
+.+..+.||++.|+.+.+.
T Consensus 39 ~~~~~~~~a~~~~~~~~i~ 57 (91)
T cd00859 39 KLKKQFKYADRSGARFAVI 57 (91)
T ss_pred CHHHHHHHHHHcCCCEEEE
Confidence 5788999999999988664
No 123
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=20.60 E-value=1.1e+02 Score=22.67 Aligned_cols=19 Identities=11% Similarity=0.235 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHcCCeEEEE
Q 032925 110 SKEAAREFAERHGWEYVVS 128 (130)
Q Consensus 110 SkE~Aiafaek~Gw~Y~V~ 128 (130)
..|.+.++|++.|+++.+.
T Consensus 46 ~~~~~~~~~~~~gi~~~~~ 64 (189)
T TIGR02432 46 EAEFVQQFCKKLNIPLEIK 64 (189)
T ss_pred HHHHHHHHHHHcCCCEEEE
Confidence 3688999999999999875
No 124
>PTZ00175 diphthine synthase; Provisional
Probab=20.59 E-value=1.4e+02 Score=24.83 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=24.3
Q ss_pred ccCCCCccCCcCCceeeeCCHHHHHHHHHHcCCeEEEE
Q 032925 91 WTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVS 128 (130)
Q Consensus 91 WtsS~D~~sqv~~~~L~F~SkE~Aiafaek~Gw~Y~V~ 128 (130)
--.+|||+ -|.+--+=+..|+++|++++|.
T Consensus 81 ~L~~GDP~--------i~~t~~~l~~~~~~~gi~vevI 110 (270)
T PTZ00175 81 FLVVGDPF--------CATTHTDLYLRAKKKGIEVEVI 110 (270)
T ss_pred EEECCCCC--------ccCCHHHHHHHHHHCCCcEEEE
Confidence 44579996 5777777788999999999985
No 125
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=20.49 E-value=1.9e+02 Score=24.33 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=19.3
Q ss_pred eeeeCCHHHHHHHHHHcCCeEEEEE
Q 032925 105 GLSFDSKEAAREFAERHGWEYVVSV 129 (130)
Q Consensus 105 ~L~F~SkE~Aiafaek~Gw~Y~V~~ 129 (130)
...|. .+++.+||++||+++.|..
T Consensus 217 g~~fG-~~~~~~Fl~~n~l~~iiR~ 240 (305)
T cd07416 217 SYFYS-YRAVCEFLQKNNLLSIIRA 240 (305)
T ss_pred ceecC-HHHHHHHHHHcCCeEEEEe
Confidence 45665 4788899999999998863
No 126
>PRK06746 peptide chain release factor 2; Provisional
Probab=20.37 E-value=89 Score=27.19 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=12.8
Q ss_pred HHHHHHcCCeEEEEE
Q 032925 115 REFAERHGWEYVVSV 129 (130)
Q Consensus 115 iafaek~Gw~Y~V~~ 129 (130)
..||+++||+++|..
T Consensus 113 ~r~a~~~g~~~evi~ 127 (326)
T PRK06746 113 TRWAEKRGFKVETVD 127 (326)
T ss_pred HHHHHHcCCEEEEEe
Confidence 568999999999863
No 127
>COG5079 SAC3 Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and chromosome partitioning]
Probab=20.34 E-value=55 Score=30.86 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.5
Q ss_pred eeeeCCHHHHHHHHHHcCCeEEE
Q 032925 105 GLSFDSKEAAREFAERHGWEYVV 127 (130)
Q Consensus 105 ~L~F~SkE~Aiafaek~Gw~Y~V 127 (130)
.|.|+++++++.||+-+|++..+
T Consensus 356 il~f~~~~e~~efckyy~lei~~ 378 (646)
T COG5079 356 ILDFEEKGEGEEFCKYYGLEIRI 378 (646)
T ss_pred hccccccchhHHHhhhcceeeec
Confidence 68999999999999999998753
No 128
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=20.18 E-value=97 Score=26.51 Aligned_cols=21 Identities=38% Similarity=0.724 Sum_probs=18.4
Q ss_pred eeCCHHHHHHHHHHcCCeEEE
Q 032925 107 SFDSKEAAREFAERHGWEYVV 127 (130)
Q Consensus 107 ~F~SkE~Aiafaek~Gw~Y~V 127 (130)
.|-|+|+|.+..+++||.|.-
T Consensus 130 ~~y~~~~a~~~~~~~g~~~~~ 150 (308)
T cd04235 130 PFYSEEEAEELAAEKGWTFKE 150 (308)
T ss_pred CCcCHHHHHHHHHHcCCEEEE
Confidence 599999999999999996643
No 129
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=20.11 E-value=80 Score=26.76 Aligned_cols=31 Identities=23% Similarity=0.196 Sum_probs=20.5
Q ss_pred CCccCCcCCceeeeCCHHHHHHHHHHcCCeEE
Q 032925 95 GDPYANVGDAGLSFDSKEAAREFAERHGWEYV 126 (130)
Q Consensus 95 ~D~~sqv~~~~L~F~SkE~Aiafaek~Gw~Y~ 126 (130)
-.|..|--..+..+...| -+.||++||+..+
T Consensus 157 ~~p~~NQIe~hp~~~q~e-l~~~~~~~gI~v~ 187 (280)
T COG0656 157 VKPAVNQIEYHPYLRQPE-LLPFCQRHGIAVE 187 (280)
T ss_pred CCCceEEEEeccCCCcHH-HHHHHHHcCCEEE
Confidence 334433223455566666 9999999999865
Done!