BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032926
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 108 bits (271), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 84/113 (74%), Gaps = 2/113 (1%)
Query: 18 ASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLR 77
+S+T+DV G+L LY+A++L + GEDILDEAI FTT HL V++ ++ +E++ H+L+
Sbjct: 145 SSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVAS--LDHPLSEEVSHALK 202
Query: 78 VPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
+RR + R+E+R++L +Y + H++ LL FAK+DFN+LQ +H+K+ SEI R
Sbjct: 203 QSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICR 255
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 93.6 bits (231), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 74/112 (66%), Gaps = 1/112 (0%)
Query: 19 SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRV 78
+L D + +LSLYEA+ LA+ GE+ILDEA VF +HLK + S ++ AEQ+ H+L +
Sbjct: 143 NLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKEL-SEEKIGKELAEQVNHALEL 201
Query: 79 PLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
PL R RLE+ + ++ Y + + +Q LL A LD+N++Q+++Q+ E +R
Sbjct: 202 PLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRETSR 253
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
Query: 19 SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRV 78
SL +DV G+L+LYEA+H+ +DIL++A+ F+T HL+S + + S EQ+ H+L
Sbjct: 126 SLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQ 183
Query: 79 PLRRAVSRLESRYFL-DIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
L + V R+E+R+F+ IY ++ + LL FAKLDFN+LQ +H+++ ++++R
Sbjct: 184 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 236
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
Query: 19 SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRV 78
SL +DV G+L+LYEA+H+ +DIL++A+ F+T HL+S + + S EQ+ H+L
Sbjct: 139 SLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQ 196
Query: 79 PLRRAVSRLESRYFL-DIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
L + V R+E+R+F+ IY ++ + LL FAKLDFN+LQ +H+++ ++++R
Sbjct: 197 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 249
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
Query: 19 SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRV 78
SL +DV G+L+LYEA+H+ +DIL++A+ F+T HL+S + + S EQ+ H+L
Sbjct: 139 SLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQ 196
Query: 79 PLRRAVSRLESRYFL-DIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
L + V R+E+R+F+ IY ++ + LL FAKLDFN+LQ +H+++ ++++R
Sbjct: 197 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 249
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
Query: 19 SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRV 78
SL +DV G+L+LYEA+H+ +DIL++A+ F+T HL+S + + S EQ+ H+L
Sbjct: 141 SLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQ 198
Query: 79 PLRRAVSRLESRYFL-DIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
L + V R+E+R+F+ IY ++ + LL FAKLDFN+LQ +H+++ ++++R
Sbjct: 199 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 251
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
Query: 19 SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRV 78
SL +DV G+L+LYEA+H+ +DIL++A+ F+T HL+S + + S EQ+ H+L
Sbjct: 139 SLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQ 196
Query: 79 PLRRAVSRLESRYFL-DIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
L + V R+E+R+F+ IY ++ + LL FAKLDFN+LQ +H+++ ++++R
Sbjct: 197 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 249
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
Query: 19 SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRV 78
SL +DV G+L+LYEA+H+ +DIL++A+ F+T HL+S + + S EQ+ H+L
Sbjct: 139 SLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQ 196
Query: 79 PLRRAVSRLESRYFL-DIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
L + V R+E+R+F+ IY ++ + LL FAKLDFN+LQ +H+++ ++++R
Sbjct: 197 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 249
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
Query: 19 SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRV 78
SL +DV G+L+LYEA+H+ +DIL++A+ F+T HL+S + + S EQ+ H+L
Sbjct: 141 SLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQ 198
Query: 79 PLRRAVSRLESRYFL-DIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
L + V R+E+R+F+ IY ++ + LL FAKLDFN+LQ +H+++ ++++R
Sbjct: 199 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 251
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
Query: 19 SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRV 78
SL +DV G+L+LYEA+H+ +DIL++A+ F+T HL+S + + S EQ+ H+L
Sbjct: 139 SLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQ 196
Query: 79 PLRRAVSRLESRYFL-DIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
L + V R+E+R+F+ IY ++ + LL FAKLDFN+LQ +H+++ ++++R
Sbjct: 197 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 249
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 92.8 bits (229), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
Query: 19 SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRV 78
SL +DV G+L+LYEA+H+ +DIL++A+ F+T HL+S + + S EQ+ H+L
Sbjct: 139 SLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLES--AAPHLKSPLREQVTHALEQ 196
Query: 79 PLRRAVSRLESRYFL-DIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
L + V R+E+R+F+ IY ++ + LL FAKLDFN+LQ +H+++ ++++R
Sbjct: 197 CLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSR 249
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
Query: 18 ASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMV--SNSQVNSTFAEQIRHS 75
ASL D +GML LYEA+ L GED L+ A F T L+ + ++++ IRHS
Sbjct: 136 ASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHS 195
Query: 76 LRVPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
L +PL + +E+R+F+D Y R + + AKL+FNI+QA HQ++ +++R
Sbjct: 196 LDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQELKDLSR 250
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 18/130 (13%)
Query: 18 ASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTF------AEQ 71
DV ML+LY A+ LA PGE+ILDEA F T +L+ + S+ +S + +++
Sbjct: 385 GQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQE 444
Query: 72 IRHSLRVPLRRAVSRLESRYFLDIYPRD------------DLHDQTLLNFAKLDFNILQA 119
I+++L+ +V R+E++ + +Y D ++++ L KLDFNI+Q+
Sbjct: 445 IKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQS 504
Query: 120 MHQKKASEIN 129
+HQ++ +
Sbjct: 505 IHQEEMKNVT 514
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 19 SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHL-KSMVSNSQVNSTFAEQIRHSLR 77
SL +D G+L LYEA+ L+ GE+ L A F T L K ++ + +N I +L
Sbjct: 161 SLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDKDIN--LLSSIERALE 218
Query: 78 VPLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130
+P V +R F+D Y R + T+L AKLDFN++QA Q++ E +R
Sbjct: 219 LPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASR 271
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 58/109 (53%)
Query: 19 SLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRV 78
SL++D G+L LYEA+ L GE L+ A F T L+ V+ V+ +I +SL +
Sbjct: 133 SLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDI 192
Query: 79 PLRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASE 127
PL + R + +++ Y + + +L A LD NI+QA Q++ E
Sbjct: 193 PLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEELKE 241
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 63.2 bits (152), Expect = 4e-11, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 68/125 (54%), Gaps = 18/125 (14%)
Query: 24 VEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFA------EQIRHSLR 77
V ML++ +H++ PGE I++EA + T +L++ + N +A ++ ++L+
Sbjct: 363 VTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALK 422
Query: 78 VPLRRAVSRLESRYFLDIYPRDD------------LHDQTLLNFAKLDFNILQAMHQKKA 125
P +++ RLE+R +++ Y DD + ++ L AKLDFN +Q++HQ +
Sbjct: 423 YPWHKSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTEL 482
Query: 126 SEINR 130
++ R
Sbjct: 483 QDLRR 487
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 13/121 (10%)
Query: 23 DVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLK-SMVSNSQVNSTFAEQIRHSLRVPLR 81
++ +++L+ A+ LA P E +D+A F +L+ ++ + N+ ++I + + P
Sbjct: 338 ELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWH 397
Query: 82 RAVSRLESRYFLD------------IYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEIN 129
++ RLE+R ++D +Y L + L AKLDFNI+Q++HQ++ +
Sbjct: 398 MSIPRLEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLT 457
Query: 130 R 130
R
Sbjct: 458 R 458
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 25/132 (18%)
Query: 24 VEGMLSLYEAAHLAIPGEDILDEAIVFTTTHL------KSMVSNSQVNSTFAEQIRHSLR 77
V GM +LY A+ LA P E+IL A F+ +L + ++ + +I +L
Sbjct: 337 VTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALE 396
Query: 78 VPLRRAVSRLESRYFLDIYPRDD-------------LHDQTLLNFAKLDFNILQAMHQ-- 122
+P ++ R+E+R+++D Y ++ +++ L AK D+N QA HQ
Sbjct: 397 IPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLE 456
Query: 123 ----KKASEINR 130
+K E NR
Sbjct: 457 WDIFQKWYEENR 468
>pdb|3EFZ|A Chain A, Crystal Structure Of A 14-3-3 Protein From Cryptosporidium
Parvum (Cgd1_2980)
pdb|3EFZ|B Chain B, Crystal Structure Of A 14-3-3 Protein From Cryptosporidium
Parvum (Cgd1_2980)
pdb|3EFZ|C Chain C, Crystal Structure Of A 14-3-3 Protein From Cryptosporidium
Parvum (Cgd1_2980)
pdb|3EFZ|D Chain D, Crystal Structure Of A 14-3-3 Protein From Cryptosporidium
Parvum (Cgd1_2980)
Length = 268
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 90 RYFLDIYPRDDLHDQTLLNFAKLDFNIL 117
R FL+ YP D L+ T+LN+ L +++L
Sbjct: 183 RSFLEKYPSDPLYLATILNYTILKYDLL 210
>pdb|2P82|A Chain A, Cysteine Protease Atg4a
pdb|2P82|B Chain B, Cysteine Protease Atg4a
pdb|2P82|C Chain C, Cysteine Protease Atg4a
pdb|2P82|D Chain D, Cysteine Protease Atg4a
Length = 355
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/58 (20%), Positives = 26/58 (44%)
Query: 43 ILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYPRDD 100
L + ++F H +++ N T +Q H L+ P R + L+ L + +++
Sbjct: 266 FLGDELIFLDPHTTQTFVDTEENGTVNDQTFHCLQSPQRMNILNLDPSVALGFFCKEE 323
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.132 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,797,881
Number of Sequences: 62578
Number of extensions: 82730
Number of successful extensions: 253
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 203
Number of HSP's gapped (non-prelim): 23
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)