Query 032926
Match_columns 130
No_of_seqs 104 out of 693
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:39:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032926.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032926hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 9.5E-51 2.1E-55 350.0 12.8 130 1-130 115-245 (542)
2 PLN02279 ent-kaur-16-ene synth 100.0 8.3E-45 1.8E-49 323.6 12.8 128 1-130 332-479 (784)
3 PLN02592 ent-copalyl diphospha 100.0 1.7E-43 3.7E-48 315.1 12.4 129 1-130 377-527 (800)
4 PF01397 Terpene_synth: Terpen 99.9 4.8E-27 1E-31 179.3 8.3 76 1-76 107-183 (183)
5 COG5123 TOA2 Transcription ini 70.4 2.9 6.2E-05 29.5 1.5 41 24-75 1-41 (113)
6 KOG3463 Transcription initiati 60.9 6.5 0.00014 27.9 1.8 38 27-75 3-40 (109)
7 COG3068 Uncharacterized protei 33.2 18 0.00038 27.7 0.5 19 76-94 2-20 (194)
8 PF02268 TFIIA_gamma_N: Transc 27.4 7.9 0.00017 23.6 -1.8 35 28-73 3-37 (49)
9 PF13625 Helicase_C_3: Helicas 25.9 73 0.0016 22.3 2.7 41 27-76 44-84 (129)
10 KOG2949 Ketopantoate hydroxyme 25.1 55 0.0012 26.6 2.1 44 22-79 179-222 (306)
11 PF05377 FlaC_arch: Flagella a 24.5 47 0.001 20.8 1.2 16 19-34 32-47 (55)
12 KOG2244 Highly conserved prote 24.4 71 0.0015 29.2 2.8 26 24-53 583-608 (786)
13 KOG3951 Uncharacterized conser 23.3 1.2E+02 0.0027 25.0 3.7 45 11-57 264-308 (321)
14 COG1331 Highly conserved prote 22.4 1.3E+02 0.0029 27.7 4.1 34 24-61 474-507 (667)
15 PF15009 TMEM173: Transmembran 21.6 96 0.0021 25.8 2.9 42 19-61 223-267 (305)
16 KOG2057 Predicted equilibrativ 21.5 1E+02 0.0022 26.5 3.0 40 83-123 109-153 (499)
17 COG5649 Uncharacterized conser 21.1 45 0.00098 24.1 0.8 36 75-110 84-121 (132)
18 PF08673 RsbU_N: Phosphoserine 20.2 69 0.0015 21.1 1.5 26 35-60 11-36 (77)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=9.5e-51 Score=349.96 Aligned_cols=130 Identities=53% Similarity=0.925 Sum_probs=125.3
Q ss_pred CChHhhhccccCCccccccchhchHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHhhcC-CCCccHHHHHHHhcCCc
Q 032926 1 MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNS-QVNSTFAEQIRHSLRVP 79 (130)
Q Consensus 1 VSsDvf~~F~d~~g~F~~~~~~dv~~lL~LYeAS~l~~~gE~iLdea~~fs~~~L~~~~~~~-~~~~~l~~~V~~aL~~P 79 (130)
||||||++|+|++|+|++++.+||+||||||||||+++|||+|||+|+.||+++|++.++++ .++++|+++|++||++|
T Consensus 115 vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P 194 (542)
T cd00684 115 VSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIP 194 (542)
T ss_pred cCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCc
Confidence 89999999999999999999999999999999999999999999999999999999999842 16889999999999999
Q ss_pred ccchhhhHHHhhhhhhcCCCCcccHHHHHHHHHhhHHHHHHHHHHHHHHhC
Q 032926 80 LRRAVSRLESRYFLDIYPRDDLHDQTLLNFAKLDFNILQAMHQKKASEINR 130 (130)
Q Consensus 80 ~h~~l~Rlear~yI~~Y~~~~~~n~~lLelAklDFn~~Qs~hq~EL~~lsr 130 (130)
|||++||+|||+||++|++++++|+.||||||+|||+||++||+||++++|
T Consensus 195 ~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El~~~~r 245 (542)
T cd00684 195 LHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEELKILSR 245 (542)
T ss_pred hhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHHHHHHHHhH
Confidence 999999999999999999999999999999999999999999999999975
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=8.3e-45 Score=323.60 Aligned_cols=128 Identities=27% Similarity=0.505 Sum_probs=119.7
Q ss_pred CChHhhhccccCCccccccc---hhchHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHhhcCC-----CCccHHHHH
Q 032926 1 MSCDVFEKFKDDDGKFKASL---TNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQ-----VNSTFAEQI 72 (130)
Q Consensus 1 VSsDvf~~F~d~~g~F~~~~---~~dv~~lL~LYeAS~l~~~gE~iLdea~~fs~~~L~~~~~~~~-----~~~~l~~~V 72 (130)
||||||++|+|+ + |++++ .+||+||||||||||+++|||+|||+|+.||+++|++.++++. ++++|+++|
T Consensus 332 VS~dvf~~F~~~-~-F~~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV 409 (784)
T PLN02279 332 VSSDPLKQFAED-H-FSDSLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEV 409 (784)
T ss_pred CChhHHhhcCCC-c-ccchhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhcccccccccCccHHHHH
Confidence 899999999955 4 99887 6999999999999999999999999999999999999987532 467899999
Q ss_pred HHhcCCcccchhhhHHHhhhhhhcCCCCc------------ccHHHHHHHHHhhHHHHHHHHHHHHHHhC
Q 032926 73 RHSLRVPLRRAVSRLESRYFLDIYPRDDL------------HDQTLLNFAKLDFNILQAMHQKKASEINR 130 (130)
Q Consensus 73 ~~aL~~P~h~~l~Rlear~yI~~Y~~~~~------------~n~~lLelAklDFn~~Qs~hq~EL~~lsr 130 (130)
++||++|||+++||+|||+||++|+.++. +|+.||||||+|||+||++||+||++|+|
T Consensus 410 ~~AL~~P~~~~l~RlEaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~r 479 (784)
T PLN02279 410 EDALNFPYYANLERLANRRSIENYAVDDTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLER 479 (784)
T ss_pred HHHhcCchhcCccHHHHHHHHHHhccccchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCe
Confidence 99999999999999999999999998885 79999999999999999999999999986
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=1.7e-43 Score=315.10 Aligned_cols=129 Identities=30% Similarity=0.587 Sum_probs=119.1
Q ss_pred CChHhhhccccCCccccccc---hhchHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHhhcCC------CCccHHHH
Q 032926 1 MSCDVFEKFKDDDGKFKASL---TNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQ------VNSTFAEQ 71 (130)
Q Consensus 1 VSsDvf~~F~d~~g~F~~~~---~~dv~~lL~LYeAS~l~~~gE~iLdea~~fs~~~L~~~~~~~~------~~~~l~~~ 71 (130)
||||||++|++ +|+|++.. .+|++|||+||||||+++|||.|||+|+.||+++|++.+..++ ++++|+++
T Consensus 377 VS~DvF~~F~~-~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~e 455 (800)
T PLN02592 377 VSADVFKHFEK-GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGE 455 (800)
T ss_pred CChHHHHhhcC-CCCccccccccccchHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhccccccccccCccHHHH
Confidence 89999999986 89998655 8999999999999999999999999999999999999875222 35789999
Q ss_pred HHHhcCCcccchhhhHHHhhhhhhcCCCCcc-------------cHHHHHHHHHhhHHHHHHHHHHHHHHhC
Q 032926 72 IRHSLRVPLRRAVSRLESRYFLDIYPRDDLH-------------DQTLLNFAKLDFNILQAMHQKKASEINR 130 (130)
Q Consensus 72 V~~aL~~P~h~~l~Rlear~yI~~Y~~~~~~-------------n~~lLelAklDFn~~Qs~hq~EL~~lsr 130 (130)
|+|||++||||+|||+||||||++|++++++ |+.||||||+|||+||++||+||++++|
T Consensus 456 V~~AL~~P~~~~l~RlEaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsr 527 (800)
T PLN02592 456 VGFALEIPWYASLPRVETRFYIEQYGGEDDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQK 527 (800)
T ss_pred HHHhccChhhcCcchHHHHHHHHHhcCCcccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhH
Confidence 9999999999999999999999999987764 9999999999999999999999999986
No 4
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=99.94 E-value=4.8e-27 Score=179.34 Aligned_cols=76 Identities=59% Similarity=0.953 Sum_probs=66.4
Q ss_pred CChHhhhccccCCccccccchhchHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHhhcCCCC-ccHHHHHHHhc
Q 032926 1 MSCDVFEKFKDDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVN-STFAEQIRHSL 76 (130)
Q Consensus 1 VSsDvf~~F~d~~g~F~~~~~~dv~~lL~LYeAS~l~~~gE~iLdea~~fs~~~L~~~~~~~~~~-~~l~~~V~~aL 76 (130)
||||||++|+|++|+|+.++.+||+|||+||||||++++||+|||+|+.||+++|++++++...+ ++|+++|++||
T Consensus 107 VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~L~~~V~~AL 183 (183)
T PF01397_consen 107 VSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHGEDILDEARAFTTKHLKSLLSNLSIPDPHLAKEVKHAL 183 (183)
T ss_dssp --GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT-HHHHHHHHHHHHHHHHHHTTTCTTSCHHHHHHHHHH
T ss_pred ccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHhC
Confidence 89999999999999999999999999999999999999999999999999999999999864443 45999999997
No 5
>COG5123 TOA2 Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=70.40 E-value=2.9 Score=29.50 Aligned_cols=41 Identities=27% Similarity=0.438 Sum_probs=27.3
Q ss_pred hHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHh
Q 032926 24 VEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHS 75 (130)
Q Consensus 24 v~~lL~LYeAS~l~~~gE~iLdea~~fs~~~L~~~~~~~~~~~~l~~~V~~a 75 (130)
+.|+.+|||-|-++--=|++||+ .++.|.++++++..|-..
T Consensus 1 v~~yYElYRrs~ig~~L~dalD~-----------lis~g~isp~lam~vLet 41 (113)
T COG5123 1 VPGYYELYRRSMIGKVLEDALDE-----------LISAGVISPNLAMHVLET 41 (113)
T ss_pred CccHHHHHHHHHHHHHHHHHHHH-----------HHhcCCcCHHHHHHHHHH
Confidence 35899999999886434555554 455556777777666443
No 6
>KOG3463 consensus Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=60.86 E-value=6.5 Score=27.88 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=25.5
Q ss_pred HHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHh
Q 032926 27 MLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHS 75 (130)
Q Consensus 27 lL~LYeAS~l~~~gE~iLdea~~fs~~~L~~~~~~~~~~~~l~~~V~~a 75 (130)
+.+|||.+-|+--=+++ |.++++.|.++|.|+.+|-..
T Consensus 3 ~YelYR~ttlG~~L~~t-----------LDe~v~~g~itp~la~~VL~~ 40 (109)
T KOG3463|consen 3 YYELYRRTTLGNALQKT-----------LDELVSDGVITPSLAKKVLEQ 40 (109)
T ss_pred HHHHHHHhhHHHHHHHH-----------HHHHHHcCCCCHHHHHHHHHH
Confidence 57899999886332333 445667777788887776443
No 7
>COG3068 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.21 E-value=18 Score=27.71 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=16.6
Q ss_pred cCCcccchhhhHHHhhhhh
Q 032926 76 LRVPLRRAVSRLESRYFLD 94 (130)
Q Consensus 76 L~~P~h~~l~Rlear~yI~ 94 (130)
|+.|+|.|+.++|...+|-
T Consensus 2 lrNPih~RLE~lEsWQhiT 20 (194)
T COG3068 2 LQNPIHLRLERLESWQHVT 20 (194)
T ss_pred CCChHHHHHHhcchHHHHH
Confidence 6789999999999987773
No 8
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=27.40 E-value=7.9 Score=23.65 Aligned_cols=35 Identities=20% Similarity=0.397 Sum_probs=21.2
Q ss_pred HHHHHHhhhcCCCchHHHHHHHHHHHHHHHHhhcCCCCccHHHHHH
Q 032926 28 LSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIR 73 (130)
Q Consensus 28 L~LYeAS~l~~~gE~iLdea~~fs~~~L~~~~~~~~~~~~l~~~V~ 73 (130)
.+|||.|-++..= ..-|.+++.+|.++|.|+..|-
T Consensus 3 yelYR~stlG~aL-----------~dtLDeli~~~~I~p~La~kVL 37 (49)
T PF02268_consen 3 YELYRRSTLGIAL-----------TDTLDELIQEGKITPQLAMKVL 37 (49)
T ss_dssp -CGGGCSHHHHHH-----------HHHHHHHHHTTSS-HHHHHHHH
T ss_pred HHHHHcchHHHHH-----------HHHHHHHHHcCCCCHHHHHHHH
Confidence 3577777765322 2335567777788888877764
No 9
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=25.93 E-value=73 Score=22.29 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=28.2
Q ss_pred HHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHhc
Q 032926 27 MLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSL 76 (130)
Q Consensus 27 lL~LYeAS~l~~~gE~iLdea~~fs~~~L~~~~~~~~~~~~l~~~V~~aL 76 (130)
-.|||+|...+...|+|++--..+|+. .++.++...|+..-
T Consensus 44 ~~Sl~~A~~~G~~~e~i~~~L~~~S~~---------~lP~~v~~~i~~w~ 84 (129)
T PF13625_consen 44 PASLWRAASAGLTAEEIIEFLERYSKN---------PLPQNVEQSIEDWA 84 (129)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHcCC---------CCCHHHHHHHHHHH
Confidence 468999999999999998876666532 34555555554433
No 10
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=25.06 E-value=55 Score=26.65 Aligned_cols=44 Identities=25% Similarity=0.393 Sum_probs=34.2
Q ss_pred hchHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHhcCCc
Q 032926 22 NDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSNSQVNSTFAEQIRHSLRVP 79 (130)
Q Consensus 22 ~dv~~lL~LYeAS~l~~~gE~iLdea~~fs~~~L~~~~~~~~~~~~l~~~V~~aL~~P 79 (130)
+.+-.+..|||-++ -|+||.+|+- .++ .++++++..+..+|.+|
T Consensus 179 r~~~~a~~l~EtAm-------qLqk~Gc~sv-----vlE--CvP~~~A~~iTs~lsiP 222 (306)
T KOG2949|consen 179 RNIASAVKLVETAM-------QLQKAGCFSV-----VLE--CVPPPVAAAITSALSIP 222 (306)
T ss_pred hhHHHHHHHHHHHH-------HHHhcccceE-----eee--cCChHHHHHHHhccCCc
Confidence 67888888998775 3688887763 233 56888999999999998
No 11
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=24.47 E-value=47 Score=20.77 Aligned_cols=16 Identities=38% Similarity=0.733 Sum_probs=12.6
Q ss_pred cchhchHHHHHHHHHh
Q 032926 19 SLTNDVEGMLSLYEAA 34 (130)
Q Consensus 19 ~~~~dv~~lL~LYeAS 34 (130)
.+...|+.||+|||.-
T Consensus 32 ~i~envk~ll~lYE~V 47 (55)
T PF05377_consen 32 KIEENVKDLLSLYEVV 47 (55)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3457799999999963
No 12
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=24.38 E-value=71 Score=29.19 Aligned_cols=26 Identities=42% Similarity=0.620 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhhhcCCCchHHHHHHHHHHH
Q 032926 24 VEGMLSLYEAAHLAIPGEDILDEAIVFTTT 53 (130)
Q Consensus 24 v~~lL~LYeAS~l~~~gE~iLdea~~fs~~ 53 (130)
|+|||.||+|+. |-+.|..|+..-..
T Consensus 583 I~gLLDlYea~~----~~e~LkwA~~LQdt 608 (786)
T KOG2244|consen 583 ISGLLDLYEAGG----GIEWLKWAIKLQDT 608 (786)
T ss_pred HHHHHHHHHccC----chHHHHHHHHHHHH
Confidence 899999999984 56788888764433
No 13
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.34 E-value=1.2e+02 Score=24.97 Aligned_cols=45 Identities=29% Similarity=0.410 Sum_probs=33.8
Q ss_pred cCCccccccchhchHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHH
Q 032926 11 DDDGKFKASLTNDVEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKS 57 (130)
Q Consensus 11 d~~g~F~~~~~~dv~~lL~LYeAS~l~~~gE~iLdea~~fs~~~L~~ 57 (130)
+.+|-|.....=|+||...|-++-- ....|. |=.|..||++||..
T Consensus 264 hp~GAFv~~s~iDmkgcvrllk~q~-p~~~e~-LLnaLRfTTKHlNd 308 (321)
T KOG3951|consen 264 HPNGAFVSNSSIDMKGCVRLLKLQP-PEQSEC-LLNALRFTTKHLND 308 (321)
T ss_pred cccccccccCcCcHHHHHHHHHcCC-chhhHH-HHHHHHHHHhhcCC
Confidence 4678888888889999999988753 333333 55788999999863
No 14
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=22.44 E-value=1.3e+02 Score=27.66 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHhhc
Q 032926 24 VEGMLSLYEAAHLAIPGEDILDEAIVFTTTHLKSMVSN 61 (130)
Q Consensus 24 v~~lL~LYeAS~l~~~gE~iLdea~~fs~~~L~~~~~~ 61 (130)
+.|+|+||+|+ .+..-|++|+..+...++..-+.
T Consensus 474 i~gll~lye~t----~d~~yL~~A~~L~~~~i~~f~d~ 507 (667)
T COG1331 474 ILGLLALYEAT----GDLAYLEKAIELADEAIADFWDD 507 (667)
T ss_pred HHHHHHHHHhh----CcHHHHHHHHHHHHHHHHHhcCC
Confidence 89999999999 35678999999998888776543
No 15
>PF15009 TMEM173: Transmembrane protein 173; PDB: 4EMT_B 4EF4_B 4EMU_A 4EF5_A.
Probab=21.64 E-value=96 Score=25.82 Aligned_cols=42 Identities=21% Similarity=0.413 Sum_probs=32.5
Q ss_pred cchhchHHHHHHHHHhhh---cCCCchHHHHHHHHHHHHHHHHhhc
Q 032926 19 SLTNDVEGMLSLYEAAHL---AIPGEDILDEAIVFTTTHLKSMVSN 61 (130)
Q Consensus 19 ~~~~dv~~lL~LYeAS~l---~~~gE~iLdea~~fs~~~L~~~~~~ 61 (130)
+..+-...|+.||+++|- ++--|+-++.+..|.++ |++++.+
T Consensus 223 ~v~E~ATPL~Tl~~m~q~~~a~~~~e~r~eq~~~F~rt-L~~iL~~ 267 (305)
T PF15009_consen 223 CVLEYATPLLTLFDMSQDSRAGFSREDRLEQAKLFYRT-LEDILED 267 (305)
T ss_dssp EEEEE-THHHHHHHHHTSGGGT--HHHHHHHHHHHHHH-HHHHHHT
T ss_pred EEEeCCcHHHHHHHHhhCchhhhhHHHHHHHHHHHHHH-HHHHHhc
Confidence 446778999999999997 24668889999999976 8888874
No 16
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=21.52 E-value=1e+02 Score=26.47 Aligned_cols=40 Identities=35% Similarity=0.499 Sum_probs=31.8
Q ss_pred hhhhHHHhhhhhhcCCCCccc-----HHHHHHHHHhhHHHHHHHHH
Q 032926 83 AVSRLESRYFLDIYPRDDLHD-----QTLLNFAKLDFNILQAMHQK 123 (130)
Q Consensus 83 ~l~Rlear~yI~~Y~~~~~~n-----~~lLelAklDFn~~Qs~hq~ 123 (130)
-|.|||.-+||+.-+.+..-| ..|||+|.-| .++|..-|+
T Consensus 109 dLR~LEnYhfiDEhGKDQGINIR~kVKeilEfanDD-d~Lq~ERkK 153 (499)
T KOG2057|consen 109 DLRRLENYHFIDEHGKDQGINIRHKVKEILEFANDD-DLLQAERKK 153 (499)
T ss_pred HHHhhhhccchhhhCccccccHHHHHHHHHHHhccH-HHHHHHHHh
Confidence 578999999999999887544 6799999866 477776654
No 17
>COG5649 Uncharacterized conserved protein [Function unknown]
Probab=21.08 E-value=45 Score=24.15 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=26.0
Q ss_pred hcCCcccchhhhHH--HhhhhhhcCCCCcccHHHHHHH
Q 032926 75 SLRVPLRRAVSRLE--SRYFLDIYPRDDLHDQTLLNFA 110 (130)
Q Consensus 75 aL~~P~h~~l~Rle--ar~yI~~Y~~~~~~n~~lLelA 110 (130)
+|.-|-...=.+++ +|+||+.|+++...-..+-.+-
T Consensus 84 sL~dPa~lfnssl~gntrRaiDfhegd~~DE~af~Alv 121 (132)
T COG5649 84 SLADPAPLFNSSLEGNTRRAIDFHEGDAFDEAAFSALV 121 (132)
T ss_pred ccCCCCccccccCCCCceeeEeeccCcccCHHHHHHHH
Confidence 46556666667788 8999999999876655555443
No 18
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=20.24 E-value=69 Score=21.10 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=18.2
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHhh
Q 032926 35 HLAIPGEDILDEAIVFTTTHLKSMVS 60 (130)
Q Consensus 35 ~l~~~gE~iLdea~~fs~~~L~~~~~ 60 (130)
++...+|..|-+|..|++..++.-++
T Consensus 11 yl~~~~E~~L~~~~~~~r~~i~~~I~ 36 (77)
T PF08673_consen 11 YLETQDEQSLYQAQEFGRELIEKDIS 36 (77)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHTT--
T ss_pred HHhCCCHHHHHHHHHHHHHHHHcCCC
Confidence 45557899999999999998877654
Done!