BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032927
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ACO|A Chain A, Xray Structure Of Blc Dimer In Complex With Vaccenic Acid
pdb|2ACO|B Chain B, Xray Structure Of Blc Dimer In Complex With Vaccenic Acid
Length = 173
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 11/121 (9%)
Query: 7 MEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWSD--GKR 64
+ VV D KRY+G WYEIA F R + + ATY+L +DG ++V N+ ++ G
Sbjct: 24 VTVVNNFDAKRYLGTWYEIARFDHRFE-RGLEKVTATYSLRDDGGLNVINKGYNPDRGMW 82
Query: 65 GSIEGTAYKADPKSDEAKLXXXXXXXXXXXXXXXXGNYWVLYIDDNYQYALIGEPTRKYL 124
EG AY + A G Y V+ +D Y++AL+ P R YL
Sbjct: 83 QQSEGKAYFTGAPTRAA--------LKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYL 134
Query: 125 W 125
W
Sbjct: 135 W 135
>pdb|1QWD|A Chain A, Crystal Structure Of A Bacterial Lipocalin, The Blc Gene
Product From E. Coli
pdb|1QWD|B Chain B, Crystal Structure Of A Bacterial Lipocalin, The Blc Gene
Product From E. Coli
Length = 177
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 11/121 (9%)
Query: 7 MEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWSD--GKR 64
+ VV D KRY+G WYEIA F R + + ATY+L +DG ++V N+ ++ G
Sbjct: 28 VTVVNNFDAKRYLGTWYEIARFDHRFE-RGLEKVTATYSLRDDGGLNVINKGYNPDRGMW 86
Query: 65 GSIEGTAYKADPKSDEAKLXXXXXXXXXXXXXXXXGNYWVLYIDDNYQYALIGEPTRKYL 124
EG AY + A G Y V+ +D Y++AL+ P R YL
Sbjct: 87 QQSEGKAYFTGAPTRAA--------LKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYL 138
Query: 125 W 125
W
Sbjct: 139 W 139
>pdb|3MBT|A Chain A, Structure Of Monomeric Blc From E. Coli
Length = 168
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 11/121 (9%)
Query: 7 MEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWSD--GKR 64
+ VV D KRY+G WYEIA F R + + ATY+L +DG ++V N+ ++ G
Sbjct: 10 VTVVNNFDAKRYLGTWYEIARFDHRFE-RGLEKVTATYSLRDDGGLNVINKGYNPDRGMW 68
Query: 65 GSIEGTAYKADPKSDEAKLXXXXXXXXXXXXXXXXGNYWVLYIDDNYQYALIGEPTRKYL 124
EG AY + A G Y V+ +D Y++AL+ P R YL
Sbjct: 69 QQSEGKAYFTGAPTRAA--------LKVSFFGPFYGGYNVIALDREYRHALVSGPDRDYL 120
Query: 125 W 125
W
Sbjct: 121 W 121
>pdb|2HZQ|A Chain A, Crystal Structure Of Human Apolipoprotein D (Apod) In
Complex With Progesterone
pdb|2HZR|A Chain A, Crystal Structure Of Human Apolipoprotein D (Apod)
Length = 174
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 9 VVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRN-ETWSDGKRGSI 67
V D+ +Y GRWYEI P+ + NG +A Y+L E+G + V N E +DG I
Sbjct: 11 VQENFDVNKYPGRWYEIEKIPTTFE--NGRCIQANYSLXENGKIKVLNQELRADGTVNQI 68
Query: 68 EGTAYKADPKSDEAKL 83
EG A + ++ AKL
Sbjct: 69 EGEATPVN-LTEPAKL 83
>pdb|3EBW|A Chain A, Crystal Structure Of Major Allergens, Per A 4 From
Cockroaches
pdb|3EBW|B Chain B, Crystal Structure Of Major Allergens, Per A 4 From
Cockroaches
Length = 163
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 12 GLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWSDGKRGSIEGT 70
GLD +Y+G WYE+ P+ ++ YTL+E+G + V + +++ RG I T
Sbjct: 12 GLDXTKYVGTWYELFRTPNSDEEDFTNCEYDKYTLDENGVIQVTSVAYTNSIRGFITST 70
>pdb|1BBP|A Chain A, Molecular Structure Of The Bilin Binding Protein (Bbp)
From Pieris Brassicae After Refinement At 2.0 Angstroms
Resolution.
pdb|1BBP|B Chain B, Molecular Structure Of The Bilin Binding Protein (Bbp)
From Pieris Brassicae After Refinement At 2.0 Angstroms
Resolution.
pdb|1BBP|C Chain C, Molecular Structure Of The Bilin Binding Protein (Bbp)
From Pieris Brassicae After Refinement At 2.0 Angstroms
Resolution.
pdb|1BBP|D Chain D, Molecular Structure Of The Bilin Binding Protein (Bbp)
From Pieris Brassicae After Refinement At 2.0 Angstroms
Resolution
Length = 173
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 6 EMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWSDGKRG 65
E++ V D Y G+W+E+A +P+ + K G A YT E +V V N GK
Sbjct: 10 EVKPVDNFDWSNYHGKWWEVAKYPNSVE-KYGKCGWAEYT-PEGKSVKVSNYHVIHGKEY 67
Query: 66 SIEGTAY 72
IEGTAY
Sbjct: 68 FIEGTAY 74
>pdb|1T0V|A Chain A, Nmr Solution Structure Of The Engineered Lipocalin
Flua(R95k) Northeast Structural Genomics Target Or17
Length = 184
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 6 EMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWSDGKRG 65
E++ V D +Y G+W+E+A +PS N K G A YT E +V V GK
Sbjct: 10 EVKPVDNFDWSQYHGKWWEVAKYPSPNG-KYGKCGWAEYT-PEGKSVKVSRYDVIHGKEY 67
Query: 66 SIEGTAY 72
+EGTAY
Sbjct: 68 FMEGTAY 74
>pdb|1N0S|A Chain A, Engineered Lipocalin Flua In Complex With Fluorescein
pdb|1N0S|B Chain B, Engineered Lipocalin Flua In Complex With Fluorescein
Length = 184
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 6 EMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWSDGKRG 65
E++ V D +Y G+W+E+A +PS N K G A YT E +V V GK
Sbjct: 10 EVKPVDNFDWSQYHGKWWEVAKYPSPNG-KYGKCGWAEYT-PEGKSVKVSRYDVIHGKEY 67
Query: 66 SIEGTAY 72
+EGTAY
Sbjct: 68 FMEGTAY 74
>pdb|1KXO|A Chain A, Engineered Lipocalin Diga16 : Apo-Form
pdb|1LKE|A Chain A, Engineered Lipocalin Diga16 In Complex With Digoxigenin
pdb|1LNM|A Chain A, Anticalin Diga16 In Complex With Digitoxigenin
Length = 184
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 6 EMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWSDGKRG 65
E++ V D +Y G+W+++A++P + K G A YT E +V V + GK
Sbjct: 10 EVKPVDNFDWSQYHGKWWQVAAYPD-HITKYGKCGWAEYT-PEGKSVKVSRYSVIHGKEY 67
Query: 66 SIEGTAY 72
EGTAY
Sbjct: 68 FSEGTAY 74
>pdb|1EPA|A Chain A, Structure Of The Epididymal Retinoic Acid-Binding
Protein At 2.1 Angstroms Resolution
pdb|1EPA|B Chain B, Structure Of The Epididymal Retinoic Acid-Binding
Protein At 2.1 Angstroms Resolution
pdb|1EPB|A Chain A, Structure Of The Epididymal Retinoic Acid-Binding
Protein At 2.1 Angstroms Resolution
pdb|1EPB|B Chain B, Structure Of The Epididymal Retinoic Acid-Binding
Protein At 2.1 Angstroms Resolution
Length = 164
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 9 VVRGLDIKRYMGRWYEIASFPSR 31
VV+ DI +++G WYEIA F S+
Sbjct: 2 VVKDFDISKFLGFWYEIA-FASK 23
>pdb|1Z24|A Chain A, The Molecular Structure Of Insecticyanin From The
Tobacco Hornworm Manduca Sexta L. At 2.6 A Resolution
Length = 189
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 6 EMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDG-TVHVRNETWSDGKR 64
+++ V D+ + G W+EIA P N+ G T A Y DG V N S+G +
Sbjct: 11 DVKPVNDFDLSAFAGAWHEIAKLPLENE-NQGKCTIAEYKY--DGKKASVYNSFVSNGVK 67
Query: 65 GSIEG 69
+EG
Sbjct: 68 EYMEG 72
>pdb|1BSQ|A Chain A, Structural And Functional Consequences Of Point
Mutations Of Variants A And B Of Bovine
Beta-Lactoglobulin
pdb|1B8E|A Chain A, High Resolution Crystal Structure Of The Bovine Beta-
Lactoglobulin (Isoforms A And B) In Orthorombic Space
Group
pdb|1GX8|A Chain A, Bovine Beta-Lactoglobulin Complexed With Retinol,
Trigonal Lattice Z
pdb|1GX9|A Chain A, Bovine Beta-Lactoglobulin Complexed With Retinoic Acid,
Trigonal Lattice Z
pdb|1GXA|A Chain A, Bovine Beta-Lactoglobulin Complexed With Retinol And
Palmitic Acid, Trigonal Lattice Z
pdb|1B0O|A Chain A, Bovine Beta-Lactoglobulin Complexed With Palmitate,
Lattice Z
pdb|2GJ5|A Chain A, Crystal Structure Of A Secondary Vitamin D3 Binding Site
Of Milk Beta-Lactoglobulin
pdb|2R56|A Chain A, Crystal Structure Of A Recombinant Ige Fab Fragment In
Complex With Bovine Beta-Lactoglobulin Allergen
pdb|2R56|B Chain B, Crystal Structure Of A Recombinant Ige Fab Fragment In
Complex With Bovine Beta-Lactoglobulin Allergen
pdb|3NPO|A Chain A, Bovine Beta Lactoglobulin Unliganded Form
pdb|3NQ3|A Chain A, Bovine Beta-Lactoglobulin Complex With Capric Acid
pdb|3NQ9|A Chain A, Bovine Beta-Lactoglobulin Complex With Caprylic Acid
pdb|3UEU|A Chain A, Bovine Beta-Lactoglobulin Complex With Lauric Acid
pdb|3UEV|A Chain A, Bovine Beta-Lactoglobulin Complex With Myristic Acid
pdb|3UEW|A Chain A, Bovine Beta-Lactoglobulin Complex With Palmitic Acid
pdb|3UEX|A Chain A, Bovine Beta-Lactoglobulin Complex With Stearic Acid
pdb|4DQ3|A Chain A, Bovine Beta-Lactoglobulin Complex With Oleic Acid
pdb|4DQ4|A Chain A, Bovine Beta-Lactoglobulin Complex With Linoleic Acid
pdb|4GNY|A Chain A, Bovine Beta-lactoglobulin Complex With Dodecyl Sulfate
Length = 162
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 8 EVVRGLDIKRYMGRWYEIA 26
+ ++GLDI++ G WY +A
Sbjct: 5 QTMKGLDIQKVAGTWYSLA 23
>pdb|3PH5|A Chain A, Bovine Beta Lactoglobulin Crystallized Through
Ligandation Of Yttrium Cations
pdb|3PH5|B Chain B, Bovine Beta Lactoglobulin Crystallized Through
Ligandation Of Yttrium Cations
pdb|3PH6|A Chain A, Bovine Beta Lactoglobulin Crytsallized Through
Ligandation Of Yttrium
pdb|3PH6|B Chain B, Bovine Beta Lactoglobulin Crytsallized Through
Ligandation Of Yttrium
Length = 161
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 8 EVVRGLDIKRYMGRWYEIA 26
+ ++GLDI++ G WY +A
Sbjct: 4 QTMKGLDIQKVAGTWYSLA 22
>pdb|1GKA|B Chain B, The Molecular Basis Of The Coloration Mechanism In
Lobster Shell. Beta-Crustacyanin At 3.2 A Resolution
Length = 174
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 12 GLDIKRYMGRWYEIASFPSRNQP 34
D++RY GRWY+ + QP
Sbjct: 20 NFDLRRYAGRWYQTHIIENAYQP 42
>pdb|1DV9|A Chain A, Structural Changes Accompanying Ph-Induced Dissociation
Of The B-Lactoglobulin Dimer
pdb|1CJ5|A Chain A, Bovine Beta-Lactoglobulin A
Length = 162
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 8 EVVRGLDIKRYMGRWYEIA 26
+ ++GLDI++ G WY +A
Sbjct: 5 QTMKGLDIQKVAGTWYSLA 23
>pdb|1UZ2|X Chain X, The Cys121ser Mutant Of Beta-Lactoglobulin
Length = 162
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 8 EVVRGLDIKRYMGRWYEIA 26
+ ++GLDI++ G WY +A
Sbjct: 5 QTMKGLDIQKVAGTWYSLA 23
>pdb|1BSO|A Chain A, 12-Bromododecanoic Acid Binds Inside The Calyx Of Bovine
Beta-Lactoglobulin
pdb|1QG5|A Chain A, High Resolution Crystal Structure Of The Bovine Beta-
Lactoglobulin (Isoform A)
pdb|2AKQ|A Chain A, The Structure Of Bovine B-Lactoglobulin A In Crystals
Grown At Very Low Ionic Strength
pdb|2AKQ|B Chain B, The Structure Of Bovine B-Lactoglobulin A In Crystals
Grown At Very Low Ionic Strength
pdb|2AKQ|C Chain C, The Structure Of Bovine B-Lactoglobulin A In Crystals
Grown At Very Low Ionic Strength
pdb|2AKQ|D Chain D, The Structure Of Bovine B-Lactoglobulin A In Crystals
Grown At Very Low Ionic Strength
pdb|1BSY|A Chain A, Structural Basis Of The Tanford Transition Of Bovine
Beta- Lactoglobulin From Crystal Structures At Three Ph
Values; Ph 7.1
pdb|2BLG|A Chain A, Structural Basis Of The Tanford Transition Of Bovine
Beta- Lactoglobulin From Crystal Structures At Three Ph
Values; Ph 8.2
pdb|3BLG|A Chain A, Structural Basis Of The Tanford Transition Of Bovine
Beta- Lactoglobulin From Crystal Structures At Three Ph
Values; Ph 6.2
pdb|2Q2M|A Chain A, Beta-Lactoglobulin (Native)
pdb|2Q2P|A Chain A, Beta-Lactoglobulin (Reverse Native)
pdb|2Q39|A Chain A, Beta-Lactoglobulin (Low Humidity)
pdb|2Q39|B Chain B, Beta-Lactoglobulin (Low Humidity)
Length = 162
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 8 EVVRGLDIKRYMGRWYEIA 26
+ ++GLDI++ G WY +A
Sbjct: 5 QTMKGLDIQKVAGTWYSLA 23
>pdb|1BEB|A Chain A, Bovine Beta-Lactoglobulin, Lattice X
pdb|1BEB|B Chain B, Bovine Beta-Lactoglobulin, Lattice X
Length = 162
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 8 EVVRGLDIKRYMGRWYEIA 26
+ ++GLDI++ G WY +A
Sbjct: 5 QTMKGLDIQKVAGTWYSLA 23
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.132 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,951,472
Number of Sequences: 62578
Number of extensions: 138736
Number of successful extensions: 210
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 181
Number of HSP's gapped (non-prelim): 20
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)