Query 032927
Match_columns 130
No_of_seqs 116 out of 1035
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 07:40:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032927.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032927hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08212 Lipocalin_2: Lipocali 100.0 3.9E-37 8.4E-42 211.4 15.9 112 13-130 1-113 (143)
2 COG3040 Blc Bacterial lipocali 100.0 1.2E-36 2.6E-41 209.5 12.3 116 6-130 24-141 (174)
3 PRK10477 outer membrane lipopr 100.0 4.1E-35 8.8E-40 207.8 12.3 118 4-130 25-144 (177)
4 KOG4824 Apolipoprotein D/Lipoc 100.0 2E-30 4.3E-35 182.4 10.7 128 1-130 30-168 (224)
5 PF00061 Lipocalin: Lipocalin 99.5 9.6E-14 2.1E-18 93.7 8.3 101 19-130 1-112 (144)
6 PF03973 Triabin: Triabin; In 99.0 4.7E-09 1E-13 72.5 9.8 117 3-130 11-136 (148)
7 PF07137 VDE: Violaxanthin de- 98.1 5.9E-05 1.3E-09 53.8 10.0 101 7-117 28-136 (198)
8 PF02087 Nitrophorin: Nitropho 97.8 0.0018 4E-08 45.3 12.3 48 5-53 3-51 (178)
9 PLN02372 violaxanthin de-epoxi 97.6 0.0015 3.3E-08 51.5 10.6 109 9-125 197-312 (455)
10 PF11032 ApoM: Apolipoprotein 92.1 2 4.4E-05 30.8 8.5 72 3-74 22-105 (186)
11 TIGR03067 Planc_TIGR03067 Plan 69.2 28 0.0006 22.5 11.2 92 14-117 3-94 (107)
12 PF07215 DUF1419: Protein of u 64.4 5.4 0.00012 26.0 1.8 13 15-27 38-50 (111)
13 PF10681 Rot1: Chaperone for p 42.6 1.3E+02 0.0029 22.0 7.8 31 22-55 43-83 (212)
14 PF11012 DUF2850: Protein of u 39.7 91 0.002 19.2 4.8 25 19-52 3-27 (79)
15 PF08333 DUF1725: Protein of u 38.7 5.8 0.00013 17.9 -0.8 9 17-25 2-10 (20)
16 PF04170 NlpE: NlpE N-terminal 36.4 1E+02 0.0022 18.9 5.3 38 36-73 7-47 (87)
17 PF11211 DUF2997: Protein of u 32.5 63 0.0014 17.8 2.6 23 43-65 2-24 (48)
18 PHA02122 hypothetical protein 32.1 81 0.0017 18.2 3.0 18 37-54 41-58 (65)
19 COG0450 AhpC Peroxiredoxin [Po 28.5 36 0.00078 24.6 1.4 30 12-44 25-54 (194)
20 PF06119 NIDO: Nidogen-like; 28.1 1.2E+02 0.0025 18.8 3.6 23 104-126 7-29 (90)
21 COG3103 SH3 domain protein [Si 22.1 1.9E+02 0.0041 21.1 4.1 30 101-130 55-84 (205)
22 PF11572 DUF3234: Protein of u 20.2 63 0.0014 20.6 1.2 11 17-27 4-14 (103)
23 COG5005 Mu-like prophage prote 20.2 59 0.0013 22.1 1.1 14 105-118 75-88 (140)
No 1
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=100.00 E-value=3.9e-37 Score=211.35 Aligned_cols=112 Identities=50% Similarity=0.868 Sum_probs=94.4
Q ss_pred CcccCcceeeEEEEEeCCCCCCCCCcceEEEEEEcCCCcEEEEEEEEe-CCeeeeEeeEEEEcCCCCCCceEEEEeeCCC
Q 032927 13 LDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWS-DGKRGSIEGTAYKADPKSDEAKLKVKFYVPP 91 (130)
Q Consensus 13 fdl~~f~G~WYeiar~p~~~~~~~~~c~~~~y~~~~~g~~~v~~~~~~-~g~~~~~~g~~~~~~~~~~~~~~~v~f~~~~ 91 (130)
|||+||+|+||||||+|+.+|++| .|++++|++.++|.|.|.|+|+. +|+...+.|+|++.++. .+|+|.|+|+..+
T Consensus 1 ~Dl~rY~G~WYEiar~p~~~q~~~-~~~~a~Yt~~~dg~i~V~n~~~~~~g~~~~~~g~a~~~~~~-~~~~l~V~f~~~~ 78 (143)
T PF08212_consen 1 VDLDRYMGTWYEIARYPNFFQRGC-VCVTAEYTLRDDGTISVRNSCRRPDGKIKTIRGTATVVDPS-GPAKLKVRFPGIP 78 (143)
T ss_dssp --CCCC-EEEEEEEEE--CCCTT--ECEEEEEEE-TTS-EEEEEEEEETTTCCCEEEEEEEESSBT-TSSEEEEESST--
T ss_pred CChHHcCEeeeEEEEECCccccee-eeeeeeEEEcCCCEEEEEEEEEcCCCCEEEEEeEEEEcCCC-CccEEEEEEeccc
Confidence 799999999999999999999765 89999999999999999999996 89999999999998876 5899999995421
Q ss_pred CCCcCcccccEEEEEEeCCCCEEEEEcCCCCEEEEEEcC
Q 032927 92 FFPIIPVVGNYWVLYIDDNYQYALIGEPTRKYLWGASYG 130 (130)
Q Consensus 92 ~~~~~~~~~~y~Vl~tDydY~yAiv~~~~~~~~WIlsR~ 130 (130)
.+..++||||+|||||+++|++.++++++|||||.
T Consensus 79 ----~~~~~~YwVl~~D~dY~~~iv~~~~~~~~WILsR~ 113 (143)
T PF08212_consen 79 ----FPPKGNYWVLYTDYDYSWAIVGSPDREYLWILSRT 113 (143)
T ss_dssp -----TEEEEEEEEEEBTTSSEEEEEECCCCEEEEEESS
T ss_pred ----cCCCcceEEEEEcCCccEEEEecCCCCEEEEEeCC
Confidence 15578999999999999999999999999999995
No 2
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.2e-36 Score=209.51 Aligned_cols=116 Identities=42% Similarity=0.808 Sum_probs=105.2
Q ss_pred CCccccCCcccCcceeeEEEEEeCCCCCCCCCcceEEEEEEcCCCcEEEEEEEEe-CC-eeeeEeeEEEEcCCCCCCceE
Q 032927 6 EMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWS-DG-KRGSIEGTAYKADPKSDEAKL 83 (130)
Q Consensus 6 ~~~~~~~fdl~~f~G~WYeiar~p~~~~~~~~~c~~~~y~~~~~g~~~v~~~~~~-~g-~~~~~~g~~~~~~~~~~~~~~ 83 (130)
.++++.+||+++|+|+||||||+|..|+++| ..++++|.+.+++.|.|.|+|+. ++ ++++++|.|+++++. ..+++
T Consensus 24 ~p~~~~~~dl~~Y~G~WyEvaR~p~~f~~gc-~~vtA~Y~l~d~~~I~V~n~c~~~~~~~~~~ieGkA~i~~~~-~~a~L 101 (174)
T COG3040 24 SPKPVNNFDLQRYLGKWYEVARLPMRFEKGC-VQVTATYSLRDDGGISVINRCRTGDGGKWSQIEGKAKIVDNA-TRAKL 101 (174)
T ss_pred cCCcccccchhhcceeeeeeecccchhhhcc-eeeEeEEEEecCCceEEEeccccCCCCCceeecceEEEecCc-cccEE
Confidence 4566777999999999999999999999986 78999999999999999999997 44 789999999999876 57999
Q ss_pred EEEeeCCCCCCcCcccccEEEEEEeCCCCEEEEEcCCCCEEEEEEcC
Q 032927 84 KVKFYVPPFFPIIPVVGNYWVLYIDDNYQYALIGEPTRKYLWGASYG 130 (130)
Q Consensus 84 ~v~f~~~~~~~~~~~~~~y~Vl~tDydY~yAiv~~~~~~~~WIlsR~ 130 (130)
+|+|+. |+.++||||++|.||+||||++|+++++|||||+
T Consensus 102 kVsF~~-------pF~g~Y~Vl~~d~eYs~aiVgsPdr~ylWlLsRt 141 (174)
T COG3040 102 KVSFFG-------PFYGDYWVLALDPEYSWAIVGSPDREYLWLLSRT 141 (174)
T ss_pred EEEecC-------CccccEEEEEECCCccEEEEeCCCcceEEEEecC
Confidence 999953 4569999999999999999999999999999995
No 3
>PRK10477 outer membrane lipoprotein Blc; Provisional
Probab=100.00 E-value=4.1e-35 Score=207.78 Aligned_cols=118 Identities=41% Similarity=0.685 Sum_probs=106.5
Q ss_pred CCCCccccCCcccCcceeeEEEEEeCCCCCCCCCcceEEEEEEcCCCcEEEEEEEEe-C-CeeeeEeeEEEEcCCCCCCc
Q 032927 4 KKEMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWS-D-GKRGSIEGTAYKADPKSDEA 81 (130)
Q Consensus 4 ~~~~~~~~~fdl~~f~G~WYeiar~p~~~~~~~~~c~~~~y~~~~~g~~~v~~~~~~-~-g~~~~~~g~~~~~~~~~~~~ 81 (130)
++.++++++||++||+|+||||||+|+.+|++| .|++++|++.++|+|.|.|+|.. . |..+.+.|+|+++++. .++
T Consensus 25 ~~~~~~~~~fDl~ry~G~WYeIar~~~~fe~~~-~~~~a~Y~~~~~g~i~V~n~~~~~~~g~~~~~~g~a~~~~~~-~~~ 102 (177)
T PRK10477 25 PKGVTVVNNFDAKRYLGTWYEIARFDHRFERGL-EKVTATYSLRDDGGLNVINKGYNPDRGMWQESEGKAYFTGAP-TRA 102 (177)
T ss_pred CCCCcccCccCHHHhccHHHHhhcCCchhhcCc-eeEEEEEEECCCCcEEEEEeeEcCCCCCEEEEEEEEEecCCC-CCe
Confidence 357899999999999999999999999999876 79999999999999999999986 3 7778999999988765 679
Q ss_pred eEEEEeeCCCCCCcCcccccEEEEEEeCCCCEEEEEcCCCCEEEEEEcC
Q 032927 82 KLKVKFYVPPFFPIIPVVGNYWVLYIDDNYQYALIGEPTRKYLWGASYG 130 (130)
Q Consensus 82 ~~~v~f~~~~~~~~~~~~~~y~Vl~tDydY~yAiv~~~~~~~~WIlsR~ 130 (130)
+|+|+|. .|+.++|||+++|+||+||||++++++++|||||.
T Consensus 103 ~~~v~f~-------~~~~~~Y~v~~~d~dY~~aiv~~~~~~~~wIlsR~ 144 (177)
T PRK10477 103 ALKVSFF-------GPFYGGYNVIALDREYRHALVCGPDRDYLWILSRT 144 (177)
T ss_pred EEEEEec-------CCcccceEEEEEcCCCCEEEEEcCCCCEEEEEeCC
Confidence 9999993 24468999999999999999999999999999995
No 4
>KOG4824 consensus Apolipoprotein D/Lipocalin [Cell wall/membrane/envelope biogenesis]
Probab=99.97 E-value=2e-30 Score=182.36 Aligned_cols=128 Identities=35% Similarity=0.566 Sum_probs=108.3
Q ss_pred CCCCCCCccccCCcccCcceeeEEEEEeCCCCCCCCCcceEEEEEEcC-CCcEEEEEEEEe--CCeeeeEeeEEEEcCCC
Q 032927 1 MASKKEMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNE-DGTVHVRNETWS--DGKRGSIEGTAYKADPK 77 (130)
Q Consensus 1 ~~~~~~~~~~~~fdl~~f~G~WYeiar~p~~~~~~~~~c~~~~y~~~~-~g~~~v~~~~~~--~g~~~~~~g~~~~~~~~ 77 (130)
|+-||+.+++++||++||+|+|||||++|..||.+. .|++..|++.. +|+|.|.|.|.. +|+...++|.|+++++.
T Consensus 30 lg~cpnypv~knFnv~RylGrWYEVas~p~~fe~~~-gctt~~y~~~nkngkI~Vln~~v~r~dG~~n~ieG~atpvn~~ 108 (224)
T KOG4824|consen 30 LGECPNYPVAKNFNVERYLGRWYEVASFPRGFEGKG-GCTTGAYTFDNKNGKIHVLNECVHRPDGKINFIEGKATPVNED 108 (224)
T ss_pred eccCCCCccccCCChhhhcceeeeeeccccccccCC-CceeeeeEecCCCceEEEeeeeeecCCCccceeeeeeeecCCc
Confidence 688999999999999999999999999999999864 69999999886 899999999983 99999999999999876
Q ss_pred CCCceEEEEeeCCCCC-CcCcccccEEEEEEeCCCCEEEE-------EcCCCCEEEEEEcC
Q 032927 78 SDEAKLKVKFYVPPFF-PIIPVVGNYWVLYIDDNYQYALI-------GEPTRKYLWGASYG 130 (130)
Q Consensus 78 ~~~~~~~v~f~~~~~~-~~~~~~~~y~Vl~tDydY~yAiv-------~~~~~~~~WIlsR~ 130 (130)
+....+++++..|.+. .+.++...|+|+.|||+ +||++ +-+|.+++|||||.
T Consensus 109 s~k~e~kf~~~~p~~~~~~l~~~~iy~Vl~tdye-nya~~ysc~alisl~h~df~wIlsRt 168 (224)
T KOG4824|consen 109 SDKAELKFEFQEPIFEKCFLRFPPIYFVLGTDYE-NYADDYSCHALISLKHKDFLWILSRT 168 (224)
T ss_pred hhhhcceeEEecCchHhhccCCCCCcceecccHh-heeccccccceeccCCCceEEEEecC
Confidence 6667777777655432 13445679999999998 66655 45899999999994
No 5
>PF00061 Lipocalin: Lipocalin / cytosolic fatty-acid binding protein family fatty acid-binding protein signature lipocalin signature; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 1I05_A 1MUP_A 2LB6_A 1I04_A 1I06_A 1DC9_A 1URE_A 1AEL_A 1T8V_A 1ICM_A ....
Probab=99.51 E-value=9.6e-14 Score=93.73 Aligned_cols=101 Identities=23% Similarity=0.334 Sum_probs=78.8
Q ss_pred ceeeEEEEEeC-----CCCCCCCCcceEEEEEEcCCCcEEEEEEEEeCCeeeeEeeEEEEcCCCCCCceEEEEeeCCCCC
Q 032927 19 MGRWYEIASFP-----SRNQPKNGADTRATYTLNEDGTVHVRNETWSDGKRGSIEGTAYKADPKSDEAKLKVKFYVPPFF 93 (130)
Q Consensus 19 ~G~WYeiar~p-----~~~~~~~~~c~~~~y~~~~~g~~~v~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~v~f~~~~~~ 93 (130)
+|+||+||... ..+.. ..+|....+++.+++.+.+......++.|......+...+ .+|+|.+.|..
T Consensus 1 ~G~Wy~v~~as~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~---~~g~~~~~~~~---- 72 (144)
T PF00061_consen 1 AGKWYEVALASDCPEFEEEKK-ELKCFPVVIKPLANGNLPVTFTSKRGGQCVTITVTFKKTE---EPGKFTVEFSE---- 72 (144)
T ss_dssp SEEEEEEEEEESSGGHHHHHH-HTTEEEEEEEEHHTTEEEEEEEEEETTEEEEEEEEEEEEE---ETTEEEEEEEE----
T ss_pred CceeEEEEEEeCCcchhhhcc-ccccEEEEEEeecCCCeEEEEEEecCCEEEEEEEeEEecc---cCCccceeeec----
Confidence 69999999984 22222 2589999999888889999877777777988887877764 57999999742
Q ss_pred CcCcccccEEEEEEeCCCCEEEEEc------CCCCEEEEEEcC
Q 032927 94 PIIPVVGNYWVLYIDDNYQYALIGE------PTRKYLWGASYG 130 (130)
Q Consensus 94 ~~~~~~~~y~Vl~tDydY~yAiv~~------~~~~~~WIlsR~ 130 (130)
++...+++|++|||+ +|||++. .+...+|||+|.
T Consensus 73 --~~~~~~~~v~~tdy~-~yai~~~~~~~~g~~~~~~~l~~R~ 112 (144)
T PF00061_consen 73 --YPGGNDFWVLDTDYD-NYAIVYSCKKDNGKHTIVAWLLSRT 112 (144)
T ss_dssp --STTEEEEEEEEEESS-TEEEEEEEEEETTEEEEEEEEEESS
T ss_pred --cccccceeeeccCCC-CEEEEEEEccCCCceEEEEEEEcCC
Confidence 233569999999999 9999964 245689999995
No 6
>PF03973 Triabin: Triabin; InterPro: IPR005657 This family contains saliva proteins from haematophagous insects that counteract vertebrate host haemostasis events such as coagulation, vasoconstriction and platelet aggregation []. These include: Triabin, a serine-protease inhibitor. It forms a non-covalent complex with thrombin at a molecular ratio of 1:1, and inhibits thrombin-induced platelet aggregation. Pallidipin, an anticollagen induced platelet aggregation factor also found in Triatoma pallidipennis salivary homogenates. Procalin, the major allergen of Triatoma protracta saliva. All members of this family belong to MEROPS proteinase inhibitor family I59, clan IZ. ; GO: 0005488 binding, 0030682 evasion or tolerance of host defense response; PDB: 3EBK_B 1AVG_I.
Probab=99.01 E-value=4.7e-09 Score=72.45 Aligned_cols=117 Identities=13% Similarity=0.208 Sum_probs=61.9
Q ss_pred CCCCCccccCCcccCcc-eeeEEEEEeCCCCCCCCCcceEEEEEEcCCCcEEEEEEEEe-CC-eeeeEeeEEEEcCCCCC
Q 032927 3 SKKEMEVVRGLDIKRYM-GRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWS-DG-KRGSIEGTAYKADPKSD 79 (130)
Q Consensus 3 ~~~~~~~~~~fdl~~f~-G~WYeiar~p~~~~~~~~~c~~~~y~~~~~g~~~v~~~~~~-~g-~~~~~~g~~~~~~~~~~ 79 (130)
.|...++++|||.+||- |+||+--.-... . ...|-.-..+.. +|...+. ..+. +| ....+.-..+.... .
T Consensus 11 ~c~~~~~m~nFd~~kFF~g~WyvTH~k~~t-~--~tvCr~y~t~~~-~G~~~~v-~~y~~~g~~~~~v~C~~~~~~~--~ 83 (148)
T PF03973_consen 11 KCQNYKAMSNFDPTKFFKGTWYVTHAKNGT-S--STVCRKYKTSQK-DGKTKIV-GEYTFNGKKGYEVKCSCTKKSG--K 83 (148)
T ss_dssp TGGC--S-TT--HHHHCSCEEEEECCSSSG-G--CCEEEEEEECTT-T--EEEE-EEEC-T-TS-TTEEEEEEEECT--T
T ss_pred cccCCCcccCCChHHccCccEEEEeccCCC-C--CceeeEEEEEEc-CCcEEEE-EeeecccCcccEEEEEeccCcC--C
Confidence 46678899999999988 999985433211 1 135766554444 6776655 2222 32 12222223333222 3
Q ss_pred CceEEEEeeCCCCCCcCcccccEEEEEEeCCCCEEEEEc------CCCCEEEEEEcC
Q 032927 80 EAKLKVKFYVPPFFPIIPVVGNYWVLYIDDNYQYALIGE------PTRKYLWGASYG 130 (130)
Q Consensus 80 ~~~~~v~f~~~~~~~~~~~~~~y~Vl~tDydY~yAiv~~------~~~~~~WIlsR~ 130 (130)
.|+|.+.=.... ...+..++-||+|||+ +|||++. ...+..+||.|.
T Consensus 84 ~g~~~f~C~~~~---~~~f~~~~sVi~TDY~-nYAl~YrC~~~~~~~~DN~lVL~R~ 136 (148)
T PF03973_consen 84 KGQFSFDCKSKN---GTNFQVDFSVIDTDYN-NYALVYRCVTFESGKEDNYLVLQRN 136 (148)
T ss_dssp CT-EEEEEECTT----GGCEEEEEEEEE-TT-SEEEEEEEEEESS---EEEEEEESS
T ss_pred CccEEEEEEcCC---CcEEEEEEEEEEcCCC-CEEEEEEccCCCCcccccEEEEEcC
Confidence 577776643221 1234568999999999 9999973 345689999985
No 7
>PF07137 VDE: Violaxanthin de-epoxidase (VDE); InterPro: IPR010788 This family represents a conserved region approximately 350 residues long within plant violaxanthin de-epoxidase (VDE). In higher plants, violaxanthin de-epoxidase forms part of a conserved system that dissipates excess energy as heat in the light-harvesting complexes of photosystem II (PSII), thus protecting them from photo-inhibitory damage [].; GO: 0046422 violaxanthin de-epoxidase activity, 0055114 oxidation-reduction process, 0009507 chloroplast; PDB: 3CQN_B 3CQR_A.
Probab=98.10 E-value=5.9e-05 Score=53.78 Aligned_cols=101 Identities=14% Similarity=0.211 Sum_probs=55.9
Q ss_pred CccccCCcccCcceeeEEEEEeCCCCCCCCCcceEEEEEEcCCCcEEEEE--EEEe-CCeeeeEeeEEE-EcCCCCCCce
Q 032927 7 MEVVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRN--ETWS-DGKRGSIEGTAY-KADPKSDEAK 82 (130)
Q Consensus 7 ~~~~~~fdl~~f~G~WYeiar~p~~~~~~~~~c~~~~y~~~~~g~~~v~~--~~~~-~g~~~~~~g~~~-~~~~~~~~~~ 82 (130)
...+++||++.|.|+||.++-+-..|. +-.|..-.+.. +.+++-..- +-.+ +|........-+ ..++. .||.
T Consensus 28 ~~~v~~Fd~~~f~G~Wyit~GlNp~fD--~FdCQ~h~F~~-~~~kl~~~~~wRi~~pdggf~~r~~~q~fvqD~~-~Pg~ 103 (198)
T PF07137_consen 28 SVLVKSFDPKDFEGKWYITAGLNPTFD--TFDCQLHEFHT-EKDKLVGKINWRIPTPDGGFFTRSAVQRFVQDPS-QPGI 103 (198)
T ss_dssp GGS-S---GGGG-EEEEEEEESSTTTT--TTSEEEEEEEE-ETTEEEEEEEEEEE-TTS-EEEEEEEEEEEE-SS--TTE
T ss_pred hHhhccCCHhHcCceEEEecCCCCCcc--ccccccceeec-CCCeEEEEEEEEeecCCCCceeccceeEeeeCCC-CCce
Confidence 346899999999999999999865564 35799999997 456654321 1122 665432222223 33454 7898
Q ss_pred EEEEeeCCCCCCcCcccccEEEEEEe----CCCCEEEEE
Q 032927 83 LKVKFYVPPFFPIIPVVGNYWVLYID----DNYQYALIG 117 (130)
Q Consensus 83 ~~v~f~~~~~~~~~~~~~~y~Vl~tD----ydY~yAiv~ 117 (130)
|.-. .+.+| .+..+.+||+.+ .+ +|.+|+
T Consensus 104 lyn~--dneyL---~yqddWyIl~~~~~~~~~-~~vfVy 136 (198)
T PF07137_consen 104 LYNH--DNEYL---HYQDDWYILGSKIEDKPD-DFVFVY 136 (198)
T ss_dssp EEE-----GGG----EEEEEEEEEEE-SSSTT--EEEEE
T ss_pred EEec--CCeeE---EeeeeEEEEeecccCCCC-CEEEEE
Confidence 8744 23332 346688999863 45 788885
No 8
>PF02087 Nitrophorin: Nitrophorin; InterPro: IPR002351 Nitrophorins are haemoproteins found in saliva of blood-feeding insects [, ]. Saliva of the blood-sucking bug Rhodnius prolixus (Triatomid bug) contains four homologous nitrophorins, designated NP1 to NP4 in order of their relative abundance in the glands []. As isolated, nitrophorins contain nitric oxide (NO) ligated to the ferric (FeIII) haem iron. Histamine, which is released by the host in response to tissue damage, is another nitrophorin ligand. Nitrophorins transport NO to the feeding site. Dilution, binding of histamine and increase in pH (from pH ~5 in salivary gland to pH ~7.4 in the host tissue) facilitate the release of NO into the tissue where it induces vasodilatation. The salivary nitrophorin from the hemipteran Cimex lectularius (Bed bug) has no sequence similarity to R. prolixus nitrophorins. It is suggested that the two classes of insect nitrophorins have arisen as a product of the convergent evolution []. 3-D structures of several nitrophorin complexes are known []. The nitrophorin structures reveal lipocalin-like eight-stranded beta-barrel, three alpha-helices and two disulphide bonds, with haem inserted into one end of the barrel. Members of the lipocalin family are known to bind a variety of small hydrophobic ligands, including biliverdin, in a similar fashion (see [] for review). The haem iron is ligated to His59. The position of His59 is restrained through water-mediated hydrogen bond to the carboxylate of Asp70. The His59-Fe bond is bent ~15 degrees out of the imidazole plane. Asp70 forms an unusual hydrogen bond with one of the haem propionates, suggesting the residue has an altered pKa. In NP1-histamine structure, the planes of His59 and histamine imidazole rings lie in an arrangement almost identical to that found in oxidised cytochrome b5. This entry represents the nitrophorin structural domain.; GO: 0051381 histamine binding, 0070026 nitric oxide binding; PDB: 1SXX_A 2OFM_X 1X8Q_A 3TGA_A 1SXU_A 1IKJ_A 1YWD_A 1X8N_A 3FLL_A 1X8O_A ....
Probab=97.76 E-value=0.0018 Score=45.28 Aligned_cols=48 Identities=17% Similarity=0.353 Sum_probs=28.1
Q ss_pred CCCccccCCcccCcc-eeeEEEEEeCCCCCCCCCcceEEEEEEcCCCcEE
Q 032927 5 KEMEVVRGLDIKRYM-GRWYEIASFPSRNQPKNGADTRATYTLNEDGTVH 53 (130)
Q Consensus 5 ~~~~~~~~fdl~~f~-G~WYeiar~p~~~~~~~~~c~~~~y~~~~~g~~~ 53 (130)
.++.++.+||.++|- |+||+.-.+....+.....|+.-. ...++|+++
T Consensus 3 ~Ni~~kt~fdk~k~F~g~WYvThyld~~~q~t~~~ca~~~-~kt~~GkvK 51 (178)
T PF02087_consen 3 RNIKPKTDFDKDKYFSGTWYVTHYLDTDPQVTDKYCACFA-PKTSNGKVK 51 (178)
T ss_dssp SS----TT--HHHHTSSEEEEEEEEESSCCSSSSEEEEEE-EEEETTEEE
T ss_pred cCccccCCCCHHHccCceEEEEEEecCCCCcchhhhhhhc-cccCCCceE
Confidence 468899999999876 899999877544443333566543 444678876
No 9
>PLN02372 violaxanthin de-epoxidase
Probab=97.55 E-value=0.0015 Score=51.55 Aligned_cols=109 Identities=15% Similarity=0.229 Sum_probs=65.0
Q ss_pred cccCCcccCcceeeEEEEEeCCCCCCCCCcceEEEEEEcCCCcEEEE--EEEEe-CCeeeeEeeEEE-EcCCCCCCceEE
Q 032927 9 VVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVR--NETWS-DGKRGSIEGTAY-KADPKSDEAKLK 84 (130)
Q Consensus 9 ~~~~fdl~~f~G~WYeiar~p~~~~~~~~~c~~~~y~~~~~g~~~v~--~~~~~-~g~~~~~~g~~~-~~~~~~~~~~~~ 84 (130)
.+.+||.+.|.|+||.++-+-..|.- -.|..-.|...+++++-.. -+-.+ +|...+-...-+ ..++. .||.|.
T Consensus 197 lv~~F~~~~f~GsWyivaGlNP~yD~--FdCQ~h~F~~~~~~kl~~nl~wRv~tpdGgF~~Rs~vq~fvqd~~-~P~il~ 273 (455)
T PLN02372 197 LVQNFDTADFNGRWYITSGLNKTFDT--FDCQLHEFTAEDPDKLVGNLNWRINTPDGGFFTRSAVQRFVQDPN-QPGILY 273 (455)
T ss_pred HhhccCccccCccEEEecCCCCCCCc--ccccceeeecCCCCceEEeeEEEEecCCCceEeecceeeeeccCC-CCceEE
Confidence 47899999999999999988544432 4799888887656765432 12122 665332221212 23444 678776
Q ss_pred EEeeCCCCCCcCcccccEEEEEEeCCC---CEEEEEcCCCCEEE
Q 032927 85 VKFYVPPFFPIIPVVGNYWVLYIDDNY---QYALIGEPTRKYLW 125 (130)
Q Consensus 85 v~f~~~~~~~~~~~~~~y~Vl~tDydY---~yAiv~~~~~~~~W 125 (130)
-. .+.++ .+..+.+||+...+- .|.+|+......+|
T Consensus 274 n~--~NeyL---hyqddWyIl~~k~~~~~~d~~lvYYrG~ndAw 312 (455)
T PLN02372 274 NH--DNEYL---HYQDDWYILSSKIENKPDDYVFVYYRGRNDAW 312 (455)
T ss_pred cC--Cccee---ecccceEEeeccccCCCCCeEEEEeccccccc
Confidence 32 22222 235678899886651 48888643333333
No 10
>PF11032 ApoM: Apolipoprotein M (ApoM); InterPro: IPR022734 ApoM is a 25 kDa plasma protein associated with high-density lipoproteins (HDLs). ApoM is important in the formation of pre-ss-HDL and also in increasing cholesterol efflux from macrophage foam cells []. Lipoproteins consist of lipids solubilized by apolipoproteins. ApoM lacks an external amphipathic motif and is uniquely secreted to plasma without cleavage of its terminal signal peptide []. ; PDB: 2XKL_A 2WEX_A 2YG2_B 2WEW_A.
Probab=92.06 E-value=2 Score=30.80 Aligned_cols=72 Identities=22% Similarity=0.274 Sum_probs=38.6
Q ss_pred CCCCCc--cccCCcccCc----ceeeEEEEEe-CCCCCCC---CCcceEEEEEEcCCC-cEEEEEEEEe-CCeeeeEeeE
Q 032927 3 SKKEME--VVRGLDIKRY----MGRWYEIASF-PSRNQPK---NGADTRATYTLNEDG-TVHVRNETWS-DGKRGSIEGT 70 (130)
Q Consensus 3 ~~~~~~--~~~~fdl~~f----~G~WYeiar~-p~~~~~~---~~~c~~~~y~~~~~g-~~~v~~~~~~-~g~~~~~~g~ 70 (130)
.||... +...+|-++| .|+||=||-. +...... ..+.+..+.+...+. .+.++...+. +|.|..-.-+
T Consensus 22 ~C~~~~~l~~~~~d~~q~p~~~LGkW~fiAgas~~~~~L~~f~~vDs~~f~~~~~s~~~~l~l~~~iR~~~g~C~~~~~~ 101 (186)
T PF11032_consen 22 QCPEPAPLVTSGLDNTQFPSPLLGKWYFIAGASPHPESLATFKPVDSAWFNLSAGSDEETLNLTATIRMKNGKCVPRSWT 101 (186)
T ss_dssp --S---EEEEECCTCCCCCHCCSCEEEEEEEEESSGGGCGGGTTEEEEEEEEEE-SSTTEEEEEEEEEETTS-EEEEEEE
T ss_pred CCCCccccccccCCcccCCcccceeEEEEEEeCCCchHHhhhcceeeEEEEEEeCCCCCeEEeeeeecccCCeEEEeeEE
Confidence 466544 4667887776 9999999964 3222211 123455555555543 6777655554 5888765555
Q ss_pred EEEc
Q 032927 71 AYKA 74 (130)
Q Consensus 71 ~~~~ 74 (130)
....
T Consensus 102 y~l~ 105 (186)
T PF11032_consen 102 YHLS 105 (186)
T ss_dssp EEE-
T ss_pred EEEe
Confidence 5554
No 11
>TIGR03067 Planc_TIGR03067 Planctomycetes uncharacterized domain TIGR03067. This domain occurs in several species, mostly from the Planctomycetes division of the bacteria. It is expanded into a paralogous family of at least twenty-five members in Gemmata obscuriglobus UQM 2246. This family appears related to TIGR03066, which also is expanded into a large paralogous family in Gemmata obscuriglobus.
Probab=69.21 E-value=28 Score=22.46 Aligned_cols=92 Identities=17% Similarity=0.239 Sum_probs=47.8
Q ss_pred cccCcceeeEEEEEeCCCCCCCCCcceEEEEEEcCCCcEEEEEEEEeCCeeeeEeeEEEEcCCCCCCceEEEEeeCCCCC
Q 032927 14 DIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWSDGKRGSIEGTAYKADPKSDEAKLKVKFYVPPFF 93 (130)
Q Consensus 14 dl~~f~G~WYeiar~p~~~~~~~~~c~~~~y~~~~~g~~~v~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~v~f~~~~~~ 93 (130)
||++++|+|-.++.-.+.-......-....+++..+ .+.+. .+......|+.+. +++..|-++.+....++.
T Consensus 3 dl~~LqG~W~~v~~e~~G~~~~~~~~~~~~~~~~g~-~~~~~-----~~~~~~~~~~~~L-d~~~~Pk~id~~~~~g~~- 74 (107)
T TIGR03067 3 DLEKLQGTWKVVAAEKGGKAVPADKGDRLVWTFKGD-KLTVK-----DGEGDQGKGTFKL-DPAANPKTIDLTSPDGPD- 74 (107)
T ss_pred hHHhhCcEEEEEEEEeCCCcCChhhhcceEEEEeCC-EEEEE-----cCCCcceeEEEEE-CCCCCccEEEEEccCCCC-
Confidence 688999999999865432211110111134444443 34443 2222222566665 444478888887532211
Q ss_pred CcCcccccEEEEEEeCCCCEEEEE
Q 032927 94 PIIPVVGNYWVLYIDDNYQYALIG 117 (130)
Q Consensus 94 ~~~~~~~~y~Vl~tDydY~yAiv~ 117 (130)
......-|..+|-| +.-|.+
T Consensus 75 ---~g~~~~gIY~l~gd-~L~vC~ 94 (107)
T TIGR03067 75 ---KGKTIKGIYKLDGD-TLTVCF 94 (107)
T ss_pred ---CCCEEEEEEEEcCC-EEEEEE
Confidence 11234566677777 555544
No 12
>PF07215 DUF1419: Protein of unknown function (DUF1419); InterPro: IPR009862 This family consists of several bacterial proteins of around 110 residues in length. Members of this family seem to be specific to Agrobacterium species and to Rhizobium loti (Mesorhizobium loti). The function of this family is unknown.
Probab=64.41 E-value=5.4 Score=26.03 Aligned_cols=13 Identities=38% Similarity=0.958 Sum_probs=10.5
Q ss_pred ccCcceeeEEEEE
Q 032927 15 IKRYMGRWYEIAS 27 (130)
Q Consensus 15 l~~f~G~WYeiar 27 (130)
-..|.|.|+||+.
T Consensus 38 ~~ly~GeWFEI~e 50 (111)
T PF07215_consen 38 SALYAGEWFEITE 50 (111)
T ss_pred ccccccccEEecc
Confidence 3459999999974
No 13
>PF10681 Rot1: Chaperone for protein-folding within the ER, fungal; InterPro: IPR019623 This conserved fungal family is an essential molecular chaperone in the endoplasmic reticulum. Molecular chaperones transiently interact with unfolded proteins to inhibit their self-aggregation and to support their folding and/or assembly. Rot1 is a general chaperone with some substrate specificity, its substrates being the structurally unrelated Kre5 Kre6 Big1 Atg22, which are type I, type II, and polytopic membrane proteins. The dependencies of each for Rot1 do not share similarities. However, their folding does require BiP, and one of these proteins was simultaneously associated with both Rot1 and BiP. In addition, Rot1 may cooperate with BiP/Kar2 in the folding of Kre6 [].
Probab=42.56 E-value=1.3e+02 Score=22.00 Aligned_cols=31 Identities=23% Similarity=0.514 Sum_probs=21.3
Q ss_pred eEEEEEe---CCCCCCCCCcceE-------EEEEEcCCCcEEEE
Q 032927 22 WYEIASF---PSRNQPKNGADTR-------ATYTLNEDGTVHVR 55 (130)
Q Consensus 22 WYeiar~---p~~~~~~~~~c~~-------~~y~~~~~g~~~v~ 55 (130)
+||.|.+ +|.-. ..|.+ ..|++.++|+|.+.
T Consensus 43 ~~EeA~Yr~~~Np~~---p~C~~a~l~wQHGtY~l~~nGsl~L~ 83 (212)
T PF10681_consen 43 YFEEAQYRVTSNPTN---PSCPTAVLIWQHGTYELNSNGSLTLT 83 (212)
T ss_pred eeeEEEEEEccCCCC---CCCCceEEEEecceEEECCCCcEEEe
Confidence 6999976 34433 35654 47888888888764
No 14
>PF11012 DUF2850: Protein of unknown function (DUF2850); InterPro: IPR021271 This family of proteins with unknown function appear to be restricted to Vibrionaceae.
Probab=39.69 E-value=91 Score=19.19 Aligned_cols=25 Identities=36% Similarity=0.655 Sum_probs=16.6
Q ss_pred ceeeEEEEEeCCCCCCCCCcceEEEEEEcCCCcE
Q 032927 19 MGRWYEIASFPSRNQPKNGADTRATYTLNEDGTV 52 (130)
Q Consensus 19 ~G~WYeiar~p~~~~~~~~~c~~~~y~~~~~g~~ 52 (130)
.|+|-|+.-.| -.+..++++++|.+
T Consensus 3 YG~WvE~~va~---------Ya~e~~~l~~~GV~ 27 (79)
T PF11012_consen 3 YGTWVEQGVAP---------YAAEEFTLNESGVF 27 (79)
T ss_pred ceEEEECCCCC---------ccccEEEECCCcEE
Confidence 49999975443 23467788888743
No 15
>PF08333 DUF1725: Protein of unknown function (DUF1725); InterPro: IPR013544 This domain is found at the C terminus of many eukaryotic and one bacterial sequence. Many of its members are annotated as being putative L1 retrotransposons or LINE-1 reverse transcriptase homologues. The region in question is found repeated in some family members.
Probab=38.71 E-value=5.8 Score=17.95 Aligned_cols=9 Identities=33% Similarity=1.361 Sum_probs=5.9
Q ss_pred CcceeeEEE
Q 032927 17 RYMGRWYEI 25 (130)
Q Consensus 17 ~f~G~WYei 25 (130)
+|.|+|=|.
T Consensus 2 ~F~~kWmeL 10 (20)
T PF08333_consen 2 KFAGKWMEL 10 (20)
T ss_pred chHHHHHHH
Confidence 577887554
No 16
>PF04170 NlpE: NlpE N-terminal domain; InterPro: IPR007298 This family represents a bacterial outer membrane lipoprotein that is necessary for signalling by the Cpx pathway []. This pathway responds to cell envelope disturbances and increases the expression of periplasmic protein folding and degradation factors. While the molecular function of the NlpE protein is unknown, it may be involved in detecting bacterial adhesion to abiotic surfaces. NlpE from Escherichia coli and Salmonella typhi is also known to confer copper tolerance in copper-sensitive strains of E. coli, and may be involved in copper efflux and delivery of copper to copper-dependent enzymes [].; PDB: 3LHN_A 2Z4I_B 2Z4H_A.
Probab=36.36 E-value=1e+02 Score=18.87 Aligned_cols=38 Identities=21% Similarity=0.196 Sum_probs=22.1
Q ss_pred CCcc--eEEEEEEcCCCcEEEEEEEEe-CCeeeeEeeEEEE
Q 032927 36 NGAD--TRATYTLNEDGTVHVRNETWS-DGKRGSIEGTAYK 73 (130)
Q Consensus 36 ~~~c--~~~~y~~~~~g~~~v~~~~~~-~g~~~~~~g~~~~ 73 (130)
|.+| +....+|.+||++.+...... +.......|..+-
T Consensus 7 CADC~GI~t~L~L~~D~ty~l~~~Yl~~~~~~~~~~g~g~w 47 (87)
T PF04170_consen 7 CADCPGIKTTLTLNADGTYTLTETYLGKEDGPFTEKGSGTW 47 (87)
T ss_dssp ETTSSEEEEEEEE-TTSEEEEEEEEETTTSCCCEEEEEEEE
T ss_pred CCCCCCeEEEEEECCCCcEEEEEEECCCCCCCceEEEEEEE
Confidence 3455 567778889999888755543 2223444555544
No 17
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=32.53 E-value=63 Score=17.81 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=16.9
Q ss_pred EEEEcCCCcEEEEEEEEeCCeee
Q 032927 43 TYTLNEDGTVHVRNETWSDGKRG 65 (130)
Q Consensus 43 ~y~~~~~g~~~v~~~~~~~g~~~ 65 (130)
.+++.+||.+++.-.++....|.
T Consensus 2 ~~~I~~dG~V~~~v~G~~G~~C~ 24 (48)
T PF11211_consen 2 EFTIYPDGRVEEEVEGFKGSSCL 24 (48)
T ss_pred EEEECCCcEEEEEEEeccChhHH
Confidence 57888999999887777544453
No 18
>PHA02122 hypothetical protein
Probab=32.11 E-value=81 Score=18.16 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=12.2
Q ss_pred CcceEEEEEEcCCCcEEE
Q 032927 37 GADTRATYTLNEDGTVHV 54 (130)
Q Consensus 37 ~~c~~~~y~~~~~g~~~v 54 (130)
++|+..+|++.-+|.+-|
T Consensus 41 gd~v~vn~e~~~ng~l~i 58 (65)
T PHA02122 41 GDEVIVNFELVVNGKLII 58 (65)
T ss_pred CCEEEEEEEEEECCEEEE
Confidence 467777777777766544
No 19
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=28.48 E-value=36 Score=24.63 Aligned_cols=30 Identities=13% Similarity=0.362 Sum_probs=24.6
Q ss_pred CCcccCcceeeEEEEEeCCCCCCCCCcceEEEE
Q 032927 12 GLDIKRYMGRWYEIASFPSRNQPKNGADTRATY 44 (130)
Q Consensus 12 ~fdl~~f~G~WYeiar~p~~~~~~~~~c~~~~y 44 (130)
.+.+..|.|+|-.+..+|.+|.. .|.+.-.
T Consensus 25 ~i~l~d~~gkw~VLff~P~DFTf---VCpTEi~ 54 (194)
T COG0450 25 EITLSDYYGKWVVLFFYPADFTF---VCPTEII 54 (194)
T ss_pred EEechhhcCcEEEEEeccCCCCc---cCcchHH
Confidence 67888999999999999999874 6776543
No 20
>PF06119 NIDO: Nidogen-like; InterPro: IPR003886 The ~180-residue NIDO domain is an extracellular domain of unknown function, found in nidogen (entactin) and hypothetical proteins. The NIDO domain is found in association with other domains, such as nidogen G2 beta-barrel (IPR006605 from INTERPRO), thyroglobulin type-1 (IPR000716 from INTERPRO), LDLRB (IPR000033 from INTERPRO), AMOP (IPR005533 from INTERPRO), EGF-like (IPR000742 from INTERPRO), VWFD, IPT/TIG, or sushi/CCP/SCR (IPR000436 from INTERPRO) [, , , ]. Some proteins known to contain a NIDO domain are listed below: Vertebrate nidogen-1 (NID-1) or entactin, a sulphated glycoprotein widely distributed in basement membranes. Vertebrate nidogen-2 (NID-2) or osteonidogen, a cell adhesion glycoprotein which is widely distributed in basement membranes. Vertebrate alpha-tectorin. Mammalian mucin-4 (MUC4), a highly glycosylated membrane-bound protein. Xenopus ID14, a putative matrix protein. ; GO: 0007160 cell-matrix adhesion
Probab=28.13 E-value=1.2e+02 Score=18.79 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=13.8
Q ss_pred EEEEeCCCCEEEEEcCCCCEEEE
Q 032927 104 VLYIDDNYQYALIGEPTRKYLWG 126 (130)
Q Consensus 104 Vl~tDydY~yAiv~~~~~~~~WI 126 (130)
||.+|-..+||+.--+.....|.
T Consensus 7 VL~tdg~~Sfalf~Y~~~gi~W~ 29 (90)
T PF06119_consen 7 VLATDGSRSFALFNYPDGGIQWT 29 (90)
T ss_pred EEEECCCceEEEEEeCCCCEeeE
Confidence 55666665666665555555554
No 21
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=22.10 E-value=1.9e+02 Score=21.12 Aligned_cols=30 Identities=27% Similarity=0.232 Sum_probs=22.1
Q ss_pred cEEEEEEeCCCCEEEEEcCCCCEEEEEEcC
Q 032927 101 NYWVLYIDDNYQYALIGEPTRKYLWGASYG 130 (130)
Q Consensus 101 ~y~Vl~tDydY~yAiv~~~~~~~~WIlsR~ 130 (130)
.+.|+.+|-+-.|+.|-..+...+||+++.
T Consensus 55 ~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~ 84 (205)
T COG3103 55 KVTVLGTDGNTGYYQIRDSSGRTGWILSKN 84 (205)
T ss_pred EEEEEEEcCcccEEEEEecCCceEEEechh
Confidence 566777775434888888888889998863
No 22
>PF11572 DUF3234: Protein of unknown function (DUF3234); InterPro: IPR021628 This bacterial family of proteins has no known function. Some members in this family of proteins are annotated as TTHA0547 however this cannot be confirmed. ; PDB: 2Z0R_J.
Probab=20.22 E-value=63 Score=20.61 Aligned_cols=11 Identities=27% Similarity=0.851 Sum_probs=8.5
Q ss_pred CcceeeEEEEE
Q 032927 17 RYMGRWYEIAS 27 (130)
Q Consensus 17 ~f~G~WYeiar 27 (130)
.+.|+||...-
T Consensus 4 dl~g~WYVLe~ 14 (103)
T PF11572_consen 4 DLSGTWYVLED 14 (103)
T ss_dssp -TSSSEEEEES
T ss_pred CcccceEEecC
Confidence 35899999875
No 23
>COG5005 Mu-like prophage protein gpG [General function prediction only]
Probab=20.20 E-value=59 Score=22.05 Aligned_cols=14 Identities=36% Similarity=0.411 Sum_probs=9.8
Q ss_pred EEEeCCCCEEEEEc
Q 032927 105 LYIDDNYQYALIGE 118 (130)
Q Consensus 105 l~tDydY~yAiv~~ 118 (130)
|.+||+-+||+||+
T Consensus 75 ltt~y~n~~AlvGt 88 (140)
T COG5005 75 LTTDYGNNTALVGT 88 (140)
T ss_pred ccccCCCceeeecc
Confidence 35677667888864
Done!