Query 032928
Match_columns 130
No_of_seqs 128 out of 1251
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 07:41:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032928.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032928hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0509 GcvH Glycine cleavage 100.0 2.3E-36 4.9E-41 221.8 8.6 96 32-127 3-99 (131)
2 PRK01202 glycine cleavage syst 100.0 6.7E-34 1.4E-38 207.8 9.9 96 32-127 2-97 (127)
3 TIGR00527 gcvH glycine cleavag 100.0 8.2E-34 1.8E-38 207.4 9.1 95 33-127 1-96 (127)
4 PRK13380 glycine cleavage syst 100.0 1.9E-33 4.2E-38 209.6 9.6 96 32-127 7-104 (144)
5 TIGR03077 not_gcvH glycine cle 100.0 2.1E-32 4.4E-37 196.1 8.9 89 39-127 1-90 (110)
6 PRK00624 glycine cleavage syst 100.0 2.5E-32 5.4E-37 196.8 9.1 90 38-127 2-92 (114)
7 PF01597 GCV_H: Glycine cleava 100.0 2.9E-31 6.3E-36 192.5 8.7 90 38-127 1-91 (122)
8 KOG3373 Glycine cleavage syste 100.0 1.2E-31 2.7E-36 202.3 6.9 123 5-127 14-140 (172)
9 cd06848 GCS_H Glycine cleavage 100.0 4.3E-29 9.4E-34 173.6 9.2 88 40-127 1-89 (96)
10 cd06663 Biotinyl_lipoyl_domain 99.3 4.2E-12 9.2E-17 82.8 6.2 62 55-117 1-63 (73)
11 PRK08225 acetyl-CoA carboxylas 98.9 4.2E-09 9.1E-14 68.6 5.4 57 58-115 1-57 (70)
12 PRK05889 putative acetyl-CoA c 98.9 7.2E-09 1.6E-13 68.0 5.9 54 61-115 5-58 (71)
13 COG0511 AccB Biotin carboxyl c 98.8 9E-09 1.9E-13 76.2 5.2 54 57-111 69-122 (140)
14 PF00364 Biotin_lipoyl: Biotin 98.7 4.5E-08 9.7E-13 64.8 5.7 42 74-115 21-62 (74)
15 PRK06748 hypothetical protein; 98.7 4.6E-08 1E-12 67.1 5.9 55 61-116 7-62 (83)
16 PRK07051 hypothetical protein; 98.5 4.2E-07 9E-12 61.0 6.0 55 60-115 5-66 (80)
17 PRK06549 acetyl-CoA carboxylas 98.5 3.7E-07 8E-12 67.3 5.5 57 59-116 62-118 (130)
18 cd06850 biotinyl_domain The bi 98.4 8.5E-07 1.8E-11 55.6 5.9 51 63-114 4-54 (67)
19 PRK14875 acetoin dehydrogenase 98.4 5.5E-07 1.2E-11 72.6 6.0 48 67-115 17-64 (371)
20 PRK05641 putative acetyl-CoA c 98.3 1.2E-06 2.6E-11 66.1 5.7 56 59-115 85-140 (153)
21 PRK06302 acetyl-CoA carboxylas 98.3 1.5E-06 3.3E-11 65.4 5.7 40 75-114 102-141 (155)
22 TIGR00531 BCCP acetyl-CoA carb 98.3 1.5E-06 3.2E-11 65.5 5.1 55 61-115 83-143 (156)
23 PLN02983 biotin carboxyl carri 98.2 2.2E-06 4.8E-11 70.0 5.5 41 75-115 220-260 (274)
24 COG0508 AceF Pyruvate/2-oxoglu 98.2 2.6E-06 5.7E-11 72.7 5.8 49 67-116 17-65 (404)
25 PLN02226 2-oxoglutarate dehydr 98.2 3.9E-06 8.5E-11 73.0 6.9 70 42-116 76-154 (463)
26 PRK14042 pyruvate carboxylase 98.2 4.1E-06 8.8E-11 74.9 6.3 54 61-115 528-581 (596)
27 PTZ00144 dihydrolipoamide succ 98.1 4E-06 8.7E-11 72.1 6.0 48 67-115 59-106 (418)
28 TIGR01108 oadA oxaloacetate de 98.1 4E-06 8.8E-11 74.6 6.0 55 60-115 519-573 (582)
29 COG4770 Acetyl/propionyl-CoA c 98.1 7.2E-06 1.6E-10 72.9 6.6 76 40-116 543-632 (645)
30 PRK14040 oxaloacetate decarbox 98.1 6.6E-06 1.4E-10 73.5 6.0 52 63-115 529-580 (593)
31 TIGR02712 urea_carbox urea car 98.0 8.4E-06 1.8E-10 77.7 5.8 58 57-115 1131-1188(1201)
32 TIGR01235 pyruv_carbox pyruvat 98.0 1.3E-05 2.8E-10 76.2 6.3 54 61-115 1077-1130(1143)
33 PRK05704 dihydrolipoamide succ 97.9 2E-05 4.4E-10 67.4 5.9 48 67-115 17-64 (407)
34 PRK09282 pyruvate carboxylase 97.9 2.4E-05 5.2E-10 69.8 5.9 53 62-115 526-578 (592)
35 COG1038 PycA Pyruvate carboxyl 97.9 1.7E-05 3.7E-10 73.1 4.9 51 62-113 1083-1133(1149)
36 PRK12999 pyruvate carboxylase; 97.9 2.2E-05 4.9E-10 74.5 5.5 54 61-115 1079-1132(1146)
37 TIGR01347 sucB 2-oxoglutarate 97.8 3.6E-05 7.7E-10 65.9 5.8 48 67-115 15-62 (403)
38 TIGR02927 SucB_Actino 2-oxoglu 97.7 5.8E-05 1.2E-09 67.3 5.5 48 67-115 150-197 (590)
39 TIGR01348 PDHac_trf_long pyruv 97.7 6.2E-05 1.4E-09 66.5 5.3 55 60-115 118-177 (546)
40 PRK11854 aceF pyruvate dehydro 97.6 9.4E-05 2E-09 66.3 6.0 48 66-114 14-61 (633)
41 PRK11854 aceF pyruvate dehydro 97.6 0.00015 3.1E-09 65.2 6.1 47 67-114 219-265 (633)
42 cd06849 lipoyl_domain Lipoyl d 97.5 0.00038 8.2E-09 42.6 6.0 48 67-115 15-62 (74)
43 PRK11855 dihydrolipoamide acet 97.5 0.00019 4.2E-09 63.2 5.6 47 67-114 133-179 (547)
44 PF13375 RnfC_N: RnfC Barrel s 97.5 0.00082 1.8E-08 47.4 7.7 87 28-120 3-90 (101)
45 PLN02528 2-oxoisovalerate dehy 97.4 0.00035 7.6E-09 60.0 5.9 45 67-112 13-57 (416)
46 KOG0559 Dihydrolipoamide succi 97.4 0.00011 2.3E-09 62.8 2.6 63 52-115 71-134 (457)
47 TIGR01348 PDHac_trf_long pyruv 97.4 0.00039 8.4E-09 61.5 6.1 48 67-115 14-61 (546)
48 PRK11855 dihydrolipoamide acet 97.4 0.00037 8.1E-09 61.4 6.0 48 67-115 16-63 (547)
49 PRK11856 branched-chain alpha- 97.3 0.00047 1E-08 58.5 5.9 49 67-116 17-65 (411)
50 TIGR01349 PDHac_trf_mito pyruv 97.3 0.00043 9.3E-09 59.7 5.4 50 67-117 14-63 (435)
51 PLN02744 dihydrolipoyllysine-r 97.2 0.00071 1.5E-08 60.1 5.4 48 67-115 127-174 (539)
52 PF09891 DUF2118: Uncharacteri 97.0 0.0021 4.5E-08 48.6 5.9 51 64-115 86-137 (150)
53 PRK11892 pyruvate dehydrogenas 97.0 0.0014 3E-08 57.2 5.6 49 67-116 17-65 (464)
54 TIGR02927 SucB_Actino 2-oxoglu 97.0 0.0015 3.3E-08 58.4 5.9 45 69-114 19-63 (590)
55 KOG0369 Pyruvate carboxylase [ 96.9 0.0013 2.7E-08 60.5 4.7 51 61-112 1109-1159(1176)
56 KOG3266 Predicted glycine clea 96.8 0.0054 1.2E-07 46.9 6.5 85 42-127 33-137 (172)
57 KOG0557 Dihydrolipoamide acety 96.7 0.002 4.3E-08 56.2 4.5 58 53-111 38-96 (470)
58 KOG0558 Dihydrolipoamide trans 96.6 0.002 4.3E-08 55.1 3.6 57 57-113 63-124 (474)
59 KOG0238 3-Methylcrotonyl-CoA c 96.3 0.003 6.5E-08 56.2 2.8 55 62-117 605-659 (670)
60 PRK05352 Na(+)-translocating N 96.2 0.0059 1.3E-07 53.1 4.0 36 74-111 45-81 (448)
61 PRK09783 copper/silver efflux 95.9 0.015 3.3E-07 49.5 5.4 53 64-116 129-229 (409)
62 PF05896 NQRA: Na(+)-transloca 95.9 0.01 2.2E-07 48.4 4.1 38 75-114 45-83 (257)
63 PRK05035 electron transport co 95.8 0.012 2.6E-07 53.8 4.3 80 28-114 10-91 (695)
64 TIGR01945 rnfC electron transp 95.7 0.012 2.6E-07 50.7 3.7 39 74-113 46-84 (435)
65 TIGR01936 nqrA NADH:ubiquinone 95.6 0.011 2.4E-07 51.4 3.5 38 74-112 44-81 (447)
66 cd06251 M14_ASTE_ASPA_like_1 A 95.0 0.075 1.6E-06 43.2 6.1 50 67-117 227-278 (287)
67 PF13533 Biotin_lipoyl_2: Biot 94.8 0.03 6.4E-07 34.3 2.6 32 63-95 7-38 (50)
68 COG4656 RnfC Predicted NADH:ub 94.8 0.037 8E-07 49.2 4.1 44 76-121 50-93 (529)
69 cd06253 M14_ASTE_ASPA_like_3 A 94.6 0.1 2.2E-06 42.8 6.1 44 73-116 242-288 (298)
70 PRK09859 multidrug efflux syst 94.4 0.13 2.9E-06 43.0 6.5 35 58-93 61-95 (385)
71 PRK09578 periplasmic multidrug 94.4 0.068 1.5E-06 44.7 4.6 33 60-93 65-97 (385)
72 TIGR01730 RND_mfp RND family e 94.1 0.13 2.9E-06 40.8 5.6 31 62-93 30-60 (322)
73 TIGR03309 matur_yqeB selenium- 94.1 0.11 2.5E-06 42.3 5.2 34 74-111 178-211 (256)
74 PRK11556 multidrug efflux syst 93.7 0.21 4.5E-06 42.6 6.4 34 58-92 87-120 (415)
75 PRK11578 macrolide transporter 93.7 0.13 2.8E-06 42.8 4.9 33 60-93 63-95 (370)
76 TIGR02994 ectoine_eutE ectoine 93.6 0.19 4.1E-06 41.9 5.9 42 74-115 269-314 (325)
77 cd06252 M14_ASTE_ASPA_like_2 A 93.5 0.22 4.8E-06 41.0 6.0 40 75-114 259-302 (316)
78 cd06254 M14_ASTE_ASPA_like_4 A 93.3 0.25 5.4E-06 40.1 5.9 41 75-115 238-280 (288)
79 cd06255 M14_ASTE_ASPA_like_5 A 93.2 0.22 4.7E-06 40.7 5.5 50 61-111 233-284 (293)
80 COG4072 Uncharacterized protei 92.3 0.22 4.7E-06 37.6 4.0 47 74-120 106-153 (161)
81 KOG0368 Acetyl-CoA carboxylase 92.3 0.19 4.1E-06 49.9 4.5 47 64-111 691-737 (2196)
82 COG1726 NqrA Na+-transporting 92.2 0.15 3.3E-06 43.9 3.4 36 76-113 46-82 (447)
83 COG3608 Predicted deacylase [G 91.2 0.38 8.2E-06 40.7 4.7 51 64-116 262-315 (331)
84 cd06250 M14_PaAOTO_like An unc 89.9 0.82 1.8E-05 38.6 5.6 42 74-115 303-348 (359)
85 cd00210 PTS_IIA_glc PTS_IIA, P 88.5 1.9 4.1E-05 31.4 6.1 50 40-92 50-103 (124)
86 TIGR00830 PTBA PTS system, glu 88.3 1.9 4.1E-05 31.4 5.9 51 39-92 49-103 (121)
87 PRK15136 multidrug efflux syst 87.7 0.8 1.7E-05 38.7 4.1 43 50-93 53-95 (390)
88 PRK10476 multidrug resistance 86.9 1.2 2.6E-05 36.6 4.7 40 53-93 43-82 (346)
89 TIGR00998 8a0101 efflux pump m 86.6 1.2 2.6E-05 36.0 4.5 39 54-93 38-76 (334)
90 PRK08225 acetyl-CoA carboxylas 86.6 0.83 1.8E-05 29.1 2.9 30 61-91 41-70 (70)
91 PRK09439 PTS system glucose-sp 84.5 3.6 7.8E-05 31.5 5.9 52 40-94 72-127 (169)
92 TIGR02971 heterocyst_DevB ABC 83.7 1.3 2.8E-05 35.9 3.4 31 63-94 18-51 (327)
93 PRK06748 hypothetical protein; 83.6 2.6 5.6E-05 28.8 4.3 34 60-94 44-77 (83)
94 PF07831 PYNP_C: Pyrimidine nu 82.9 1.6 3.5E-05 29.0 3.0 21 74-94 37-57 (75)
95 PRK12784 hypothetical protein; 82.6 5.2 0.00011 27.4 5.4 35 53-95 45-79 (84)
96 COG2190 NagE Phosphotransferas 80.3 5.4 0.00012 30.4 5.5 67 39-108 56-126 (156)
97 PRK03598 putative efflux pump 79.1 3.3 7.2E-05 33.7 4.3 37 56-93 41-77 (331)
98 PRK10559 p-hydroxybenzoic acid 78.7 2.6 5.7E-05 34.5 3.6 33 60-93 49-81 (310)
99 PRK07051 hypothetical protein; 78.6 3.5 7.6E-05 27.2 3.6 31 60-91 49-79 (80)
100 PF04952 AstE_AspA: Succinylgl 77.6 7.6 0.00017 30.9 5.9 50 66-116 227-280 (292)
101 PF00529 HlyD: HlyD family sec 76.3 1.7 3.7E-05 34.2 1.8 30 65-95 8-37 (305)
102 PRK15030 multidrug efflux syst 76.0 6 0.00013 33.3 5.1 33 60-93 67-99 (397)
103 PF00358 PTS_EIIA_1: phosphoen 75.4 8.1 0.00018 28.4 5.1 54 40-96 54-111 (132)
104 PF12700 HlyD_2: HlyD family s 74.6 4.7 0.0001 32.0 4.0 33 60-94 23-55 (328)
105 TIGR01843 type_I_hlyD type I s 72.1 4.4 9.6E-05 33.4 3.3 34 62-96 47-80 (423)
106 TIGR03794 NHPM_micro_HlyD NHPM 71.5 4.3 9.3E-05 34.4 3.2 38 57-95 57-94 (421)
107 COG0511 AccB Biotin carboxyl c 69.5 5.5 0.00012 29.3 3.0 31 60-91 109-139 (140)
108 TIGR01995 PTS-II-ABC-beta PTS 69.3 11 0.00024 34.1 5.5 53 39-94 513-569 (610)
109 PF02666 PS_Dcarbxylase: Phosp 69.2 22 0.00048 27.3 6.5 59 44-103 122-180 (202)
110 PRK02259 aspartoacylase; Provi 68.1 6.9 0.00015 31.9 3.6 62 57-119 212-277 (288)
111 TIGR00164 PS_decarb_rel phosph 67.6 18 0.0004 27.7 5.7 46 56-104 119-164 (189)
112 PRK09824 PTS system beta-gluco 67.0 12 0.00026 34.2 5.2 53 39-94 529-585 (627)
113 PRK05889 putative acetyl-CoA c 64.7 9.2 0.0002 24.4 3.0 29 62-91 43-71 (71)
114 PRK12784 hypothetical protein; 63.6 24 0.00053 24.2 5.0 53 63-116 10-63 (84)
115 PF13437 HlyD_3: HlyD family s 62.9 12 0.00026 25.0 3.5 26 66-92 7-32 (105)
116 TIGR01000 bacteriocin_acc bact 62.6 12 0.00026 32.1 4.2 55 40-95 40-95 (457)
117 PRK03140 phosphatidylserine de 62.2 23 0.00049 28.6 5.5 56 45-104 180-235 (259)
118 PRK09439 PTS system glucose-sp 59.5 11 0.00023 29.0 3.0 45 62-111 24-72 (169)
119 COG1566 EmrA Multidrug resista 59.2 17 0.00037 31.0 4.4 49 41-92 38-86 (352)
120 PRK02597 rpoC2 DNA-directed RN 59.2 45 0.00099 33.3 7.8 66 45-113 375-452 (1331)
121 PF00364 Biotin_lipoyl: Biotin 59.2 14 0.00031 23.8 3.2 30 60-90 45-74 (74)
122 cd01134 V_A-ATPase_A V/A-type 57.2 23 0.00049 30.6 4.9 37 74-110 54-93 (369)
123 PRK05305 phosphatidylserine de 55.6 56 0.0012 25.3 6.5 47 55-104 138-184 (206)
124 PRK10255 PTS system N-acetyl g 54.4 30 0.00065 31.8 5.5 52 40-94 550-605 (648)
125 PF02749 QRPTase_N: Quinolinat 54.0 29 0.00063 23.1 4.2 46 46-93 22-69 (88)
126 COG0845 AcrA Membrane-fusion p 53.2 15 0.00032 28.7 2.9 30 62-92 70-99 (372)
127 PF06898 YqfD: Putative stage 51.6 33 0.00072 29.1 5.0 71 40-110 155-247 (385)
128 PRK09907 toxin MazF; Provision 49.7 21 0.00045 25.1 3.0 30 64-93 7-37 (111)
129 COG0688 Psd Phosphatidylserine 48.5 32 0.0007 27.7 4.3 77 39-117 153-230 (239)
130 PF01551 Peptidase_M23: Peptid 48.3 18 0.00038 24.0 2.4 19 75-93 57-75 (96)
131 COG0157 NadC Nicotinate-nucleo 48.3 18 0.00039 30.0 2.8 49 44-93 37-88 (280)
132 PTZ00144 dihydrolipoamide succ 48.1 48 0.001 28.9 5.5 33 61-94 90-122 (418)
133 PLN02226 2-oxoglutarate dehydr 47.5 30 0.00066 30.6 4.3 48 45-93 110-168 (463)
134 TIGR02876 spore_yqfD sporulati 47.1 44 0.00096 28.5 5.1 69 42-110 153-244 (382)
135 cd04456 S1_IF1A_like S1_IF1A_l 46.5 20 0.00043 24.0 2.4 31 44-75 36-66 (78)
136 TIGR00531 BCCP acetyl-CoA carb 46.0 26 0.00057 26.1 3.2 32 59-91 125-156 (156)
137 PF02452 PemK: PemK-like prote 46.0 13 0.00029 24.8 1.5 27 66-92 2-28 (110)
138 cd06910 M14_ASTE_ASPA_like_7 A 45.8 42 0.00091 27.0 4.6 33 75-111 226-259 (272)
139 PRK06549 acetyl-CoA carboxylas 45.2 31 0.00066 25.3 3.4 29 61-90 101-129 (130)
140 PLN02983 biotin carboxyl carri 43.9 75 0.0016 26.4 5.7 31 60-91 243-273 (274)
141 PRK06302 acetyl-CoA carboxylas 43.6 29 0.00062 25.9 3.1 31 60-91 125-155 (155)
142 PRK14042 pyruvate carboxylase 42.3 1.1E+02 0.0023 28.1 6.9 72 45-116 466-545 (596)
143 PRK09812 toxin ChpB; Provision 42.1 32 0.00069 24.4 3.0 29 64-92 7-37 (116)
144 PRK05641 putative acetyl-CoA c 39.6 42 0.00092 25.2 3.5 30 60-90 123-152 (153)
145 PRK10559 p-hydroxybenzoic acid 38.2 26 0.00055 28.7 2.3 21 96-116 154-174 (310)
146 TIGR00999 8a0102 Membrane Fusi 37.8 20 0.00043 27.7 1.5 18 98-115 90-107 (265)
147 PRK14698 V-type ATP synthase s 37.5 57 0.0012 31.7 4.7 55 57-111 106-163 (1017)
148 PRK14875 acetoin dehydrogenase 37.1 47 0.001 26.5 3.6 34 60-94 47-80 (371)
149 PLN02964 phosphatidylserine de 36.5 1.4E+02 0.0031 27.6 6.9 56 45-102 540-597 (644)
150 TIGR00008 infA translation ini 35.4 39 0.00085 22.2 2.4 26 44-71 42-67 (68)
151 CHL00117 rpoC2 RNA polymerase 33.7 58 0.0013 32.7 4.2 45 66-113 402-454 (1364)
152 PLN00208 translation initiatio 32.7 45 0.00098 25.1 2.6 38 33-75 60-97 (145)
153 cd05793 S1_IF1A S1_IF1A: Trans 32.7 42 0.0009 22.3 2.2 39 32-75 27-65 (77)
154 PRK15030 multidrug efflux syst 32.2 34 0.00073 28.8 2.1 21 96-116 173-193 (397)
155 TIGR01843 type_I_hlyD type I s 31.7 69 0.0015 26.3 3.8 17 102-118 344-360 (423)
156 PRK05704 dihydrolipoamide succ 31.5 75 0.0016 27.4 4.1 31 63-94 50-80 (407)
157 TIGR00998 8a0101 efflux pump m 30.9 78 0.0017 25.4 4.0 30 61-91 207-236 (334)
158 TIGR02643 T_phosphoryl thymidi 30.4 39 0.00085 29.7 2.2 19 74-92 385-403 (437)
159 PRK00723 phosphatidylserine de 29.8 1.2E+02 0.0026 25.0 5.0 62 39-102 200-264 (297)
160 TIGR02388 rpoC2_cyan DNA-direc 29.8 2.2E+02 0.0047 28.5 7.2 67 44-113 372-452 (1227)
161 smart00652 eIF1a eukaryotic tr 29.3 52 0.0011 22.2 2.3 39 32-75 32-70 (83)
162 TIGR02644 Y_phosphoryl pyrimid 28.9 42 0.00091 29.2 2.2 20 74-93 379-398 (405)
163 TIGR01347 sucB 2-oxoglutarate 28.9 91 0.002 26.9 4.2 30 63-93 48-77 (403)
164 PTZ00329 eukaryotic translatio 28.2 55 0.0012 25.0 2.4 38 33-75 60-97 (155)
165 PRK05820 deoA thymidine phosph 28.1 45 0.00098 29.3 2.2 18 75-92 387-404 (440)
166 COG0361 InfA Translation initi 28.0 71 0.0015 21.5 2.7 26 44-71 44-69 (75)
167 TIGR02645 ARCH_P_rylase putati 28.0 44 0.00095 29.9 2.1 18 75-92 453-470 (493)
168 PRK04350 thymidine phosphoryla 27.7 45 0.00097 29.8 2.1 18 75-92 445-462 (490)
169 COG0508 AceF Pyruvate/2-oxoglu 27.4 1E+02 0.0022 26.6 4.2 31 63-94 50-80 (404)
170 TIGR03327 AMP_phos AMP phospho 27.4 46 0.00099 29.8 2.2 18 75-92 454-471 (500)
171 COG2232 Predicted ATP-dependen 27.0 38 0.00083 29.2 1.5 20 73-92 334-353 (389)
172 PRK06078 pyrimidine-nucleoside 26.8 49 0.0011 29.0 2.2 21 74-94 381-401 (434)
173 TIGR00163 PS_decarb phosphatid 26.4 2.5E+02 0.0055 22.2 6.1 25 78-103 189-213 (238)
174 PRK05848 nicotinate-nucleotide 26.3 92 0.002 25.5 3.6 46 45-93 34-82 (273)
175 KOG1775 U6 snRNA-associated Sm 26.0 56 0.0012 22.3 1.9 46 42-87 17-66 (84)
176 PRK04012 translation initiatio 26.0 62 0.0013 22.7 2.2 29 44-74 57-85 (100)
177 TIGR00078 nadC nicotinate-nucl 25.9 1E+02 0.0022 25.0 3.8 47 45-93 30-78 (265)
178 PF11776 DUF3315: Domain of un 25.3 52 0.0011 20.2 1.6 18 42-59 28-45 (52)
179 PF07290 DUF1449: Protein of u 25.0 84 0.0018 24.7 3.1 29 64-92 160-189 (202)
180 PRK05742 nicotinate-nucleotide 24.7 1.1E+02 0.0024 25.0 3.9 40 54-93 48-90 (277)
181 PRK09016 quinolinate phosphori 24.2 1.1E+02 0.0024 25.5 3.8 40 53-93 66-109 (296)
182 PRK10871 nlpD lipoprotein NlpD 23.6 85 0.0018 26.5 3.0 19 75-93 274-292 (319)
183 cd01573 modD_like ModD; Quinol 23.4 1.1E+02 0.0025 24.7 3.7 46 46-93 33-80 (272)
184 TIGR01995 PTS-II-ABC-beta PTS 23.1 87 0.0019 28.4 3.2 44 64-112 468-515 (610)
185 PRK09282 pyruvate carboxylase 22.8 94 0.002 28.2 3.3 31 60-91 561-591 (592)
186 TIGR01730 RND_mfp RND family e 22.7 1.2E+02 0.0025 23.8 3.6 30 63-93 139-168 (322)
187 cd01572 QPRTase Quinolinate ph 22.6 1.3E+02 0.0029 24.3 3.9 47 45-93 32-82 (268)
188 PRK11578 macrolide transporter 22.5 1.1E+02 0.0024 25.2 3.5 28 86-114 52-79 (370)
189 cd05792 S1_eIF1AD_like S1_eIF1 21.4 1.3E+02 0.0028 20.2 3.0 31 43-74 35-65 (78)
190 PRK06106 nicotinate-nucleotide 20.7 1.4E+02 0.0031 24.6 3.7 41 53-93 51-94 (281)
191 PRK03934 phosphatidylserine de 20.6 3.5E+02 0.0075 21.8 5.9 26 77-103 218-243 (265)
192 cd04454 S1_Rrp4_like S1_Rrp4_l 20.2 1.7E+02 0.0037 18.6 3.4 33 75-109 4-36 (82)
193 TIGR01334 modD putative molybd 20.1 1.4E+02 0.003 24.5 3.5 46 45-93 36-84 (277)
No 1
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-36 Score=221.82 Aligned_cols=96 Identities=57% Similarity=0.890 Sum_probs=93.5
Q ss_pred cccCCcceeeCceeEEEEeC-CEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEe
Q 032928 32 SSVLDGLKYASSHEWVKHEG-SVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEV 110 (130)
Q Consensus 32 ~~~p~~~~ys~~H~Wv~~e~-~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~v 110 (130)
+++|++++|+.+|+|++.++ +.++||||+++|+++|+|+||+||++|++|++|+++++|||.|++++++||++|+|+++
T Consensus 3 ~~~p~~l~Y~~~heWvr~e~d~~~tvGiT~~aq~~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvev 82 (131)
T COG0509 3 CNIPDDLKYTAEHEWVRVEGDGTATVGITDYAQDQLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEV 82 (131)
T ss_pred ccccccceeccceEEEEecCCCEEEEeCCHHHHHhcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEe
Confidence 47899999999999999987 79999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcccccCCCCc
Q 032928 111 NTKLTETPGLVIFSVNS 127 (130)
Q Consensus 111 N~~l~~~P~llN~~~~~ 127 (130)
|++|.++|++||++|.+
T Consensus 83 N~~l~~~PeliN~dPyg 99 (131)
T COG0509 83 NEALVDSPELINSDPYG 99 (131)
T ss_pred chhhhcChhhhccCCCC
Confidence 99999999999999975
No 2
>PRK01202 glycine cleavage system protein H; Provisional
Probab=100.00 E-value=6.7e-34 Score=207.82 Aligned_cols=96 Identities=58% Similarity=0.913 Sum_probs=93.2
Q ss_pred cccCCcceeeCceeEEEEeCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEec
Q 032928 32 SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN 111 (130)
Q Consensus 32 ~~~p~~~~ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN 111 (130)
+.+|++++|+++|+||+.+++.++||||+|+|+++|+|.||+||++|++|++||+|++|||+|++.+|+||++|+|+++|
T Consensus 2 ~~~p~~~~ys~~H~Wv~~~~~~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN 81 (127)
T PRK01202 2 MNIPADLKYTKSHEWVRVEGDTATVGITDHAQEQLGDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVN 81 (127)
T ss_pred CcCCcCceECCCcEEEEEcCCEEEEeeCHHHHhhcCCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEh
Confidence 46899999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccccCCCCc
Q 032928 112 TKLTETPGLVIFSVNS 127 (130)
Q Consensus 112 ~~l~~~P~llN~~~~~ 127 (130)
.++.+||++||++|.+
T Consensus 82 ~~l~~~p~~ln~~p~~ 97 (127)
T PRK01202 82 EALEDSPELVNEDPYG 97 (127)
T ss_pred HHhhhCcHhhcCCCCC
Confidence 9999999999999964
No 3
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=100.00 E-value=8.2e-34 Score=207.44 Aligned_cols=95 Identities=54% Similarity=0.846 Sum_probs=91.5
Q ss_pred ccCCcceeeCceeEEEEeCC-EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEec
Q 032928 33 SVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN 111 (130)
Q Consensus 33 ~~p~~~~ys~~H~Wv~~e~~-~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN 111 (130)
.+|++++|+++|+|++.+++ .++||||+|+|+++|+|.||+||++|++|++||+|++|||+|++.+|+||++|+|+++|
T Consensus 1 ~~p~~~~y~~~H~Wv~~~~~g~~~vGiT~~a~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN 80 (127)
T TIGR00527 1 NVPADLRYSKEHEWVRVEGDGTATVGITEFAQDELGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVN 80 (127)
T ss_pred CCCcCcEECCCcEEEEEcCCcEEEEeecHHHhhCCCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEeh
Confidence 37999999999999998865 89999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccccCCCCc
Q 032928 112 TKLTETPGLVIFSVNS 127 (130)
Q Consensus 112 ~~l~~~P~llN~~~~~ 127 (130)
.+|.++|++||++|.+
T Consensus 81 ~~l~~~P~lln~~py~ 96 (127)
T TIGR00527 81 DALEDSPELVNEDPYG 96 (127)
T ss_pred HhhhhChHHHhCCCcc
Confidence 9999999999999964
No 4
>PRK13380 glycine cleavage system protein H; Provisional
Probab=100.00 E-value=1.9e-33 Score=209.57 Aligned_cols=96 Identities=42% Similarity=0.645 Sum_probs=92.2
Q ss_pred cccCCcceeeC-ceeEEEEeC-CEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEE
Q 032928 32 SSVLDGLKYAS-SHEWVKHEG-SVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIE 109 (130)
Q Consensus 32 ~~~p~~~~ys~-~H~Wv~~e~-~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~ 109 (130)
+.+|++++|++ +|+|++.++ +.++||||+|+|+++|+|++|+||++|++|++||+|++|||+|++++++||++|+|++
T Consensus 7 ~~~p~~~~Y~~~~H~Wv~~~~~g~~~vGitd~aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~ 86 (144)
T PRK13380 7 CEIPSELRYTIKNHEWLRLEGDGTVTVGITDYAQTMAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVE 86 (144)
T ss_pred ccCCccceECCCCeEEEEEcCCCEEEEecCHHHHHhcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEE
Confidence 46899999999 999999886 4899999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccCcccccCCCCc
Q 032928 110 VNTKLTETPGLVIFSVNS 127 (130)
Q Consensus 110 vN~~l~~~P~llN~~~~~ 127 (130)
+|.+|.++|++||++|.+
T Consensus 87 vN~~l~~~P~lln~dpy~ 104 (144)
T PRK13380 87 VNEALEDSPELVNEDPYG 104 (144)
T ss_pred EHHhhhhChHHhcCCCCC
Confidence 999999999999999964
No 5
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=99.98 E-value=2.1e-32 Score=196.10 Aligned_cols=89 Identities=36% Similarity=0.609 Sum_probs=86.0
Q ss_pred eeeCceeEEEE-eCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccccC
Q 032928 39 KYASSHEWVKH-EGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET 117 (130)
Q Consensus 39 ~ys~~H~Wv~~-e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~~ 117 (130)
||+++|+|++. +++.++||||+|||+++|+|+|++||++|++|++||+|++||++|++.+|+||++|+|+++|.++.++
T Consensus 1 yy~~~H~Wv~~~~~~~~~vGiT~~aq~~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~~ 80 (110)
T TIGR03077 1 WYSDYHVWILPIHSQVVRLGLTSRMQENLGNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALEDD 80 (110)
T ss_pred CcCCCcEEEEEcCCCEEEEeeCHHHHHhcCCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhC
Confidence 68999999996 57899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCc
Q 032928 118 PGLVIFSVNS 127 (130)
Q Consensus 118 P~llN~~~~~ 127 (130)
|++||++|..
T Consensus 81 P~lln~~py~ 90 (110)
T TIGR03077 81 TQPINHSPES 90 (110)
T ss_pred hHhhcCCCCC
Confidence 9999999974
No 6
>PRK00624 glycine cleavage system protein H; Provisional
Probab=99.97 E-value=2.5e-32 Score=196.79 Aligned_cols=90 Identities=33% Similarity=0.591 Sum_probs=86.9
Q ss_pred ceeeCceeEEEE-eCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928 38 LKYASSHEWVKH-EGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE 116 (130)
Q Consensus 38 ~~ys~~H~Wv~~-e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~ 116 (130)
++|+++|+|++. +++.++||||+|||+++|+|+|++||++|++|++||+|++|||+|++.+|+||++|+|+++|.+|.+
T Consensus 2 ~~y~~~H~Wv~~~~~~~~~vGiT~~a~~~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~ 81 (114)
T PRK00624 2 MWYSDYHVWIEPIHSRIVRLGLTSKMQENLGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTALED 81 (114)
T ss_pred cccCCCcEEEEEcCCCEEEEeeCHHHHHhcCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhh
Confidence 689999999997 4679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCc
Q 032928 117 TPGLVIFSVNS 127 (130)
Q Consensus 117 ~P~llN~~~~~ 127 (130)
||++||++|..
T Consensus 82 ~P~lln~dpy~ 92 (114)
T PRK00624 82 DIQPINNAPES 92 (114)
T ss_pred ChHhhcCCCCC
Confidence 99999999974
No 7
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=99.97 E-value=2.9e-31 Score=192.54 Aligned_cols=90 Identities=50% Similarity=0.817 Sum_probs=79.2
Q ss_pred ceeeCceeEEEEeC-CEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928 38 LKYASSHEWVKHEG-SVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE 116 (130)
Q Consensus 38 ~~ys~~H~Wv~~e~-~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~ 116 (130)
++|+++|+|++.++ +.++||||+++|+.+|+|+++++|++|+++++|++|++||+.|++.+|+||++|+|+++|++|.+
T Consensus 1 l~y~~~h~Wv~~~~~g~~~vGit~~a~~~lG~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l~~ 80 (122)
T PF01597_consen 1 LYYTEDHLWVKPEGDGVVRVGITDFAQDELGDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEELLD 80 (122)
T ss_dssp SEEETTSEEEEEETTTEEEEEE-HHHHHHH-SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHHHT
T ss_pred CcCCCCcEEEEECCCCEEEEEECchHhhcCCceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEcccccc
Confidence 58999999999986 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCc
Q 032928 117 TPGLVIFSVNS 127 (130)
Q Consensus 117 ~P~llN~~~~~ 127 (130)
+|++||++|.+
T Consensus 81 ~P~lln~~p~~ 91 (122)
T PF01597_consen 81 NPELLNSDPYG 91 (122)
T ss_dssp -TTHHHHSTTT
T ss_pred ChHHhccCCCC
Confidence 99999999974
No 8
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=99.97 E-value=1.2e-31 Score=202.35 Aligned_cols=123 Identities=50% Similarity=0.776 Sum_probs=107.3
Q ss_pred hhhhhhhhhhhhhccC---C-CCcccccccccccCCcceeeCceeEEEEeCCEEEEEeeecchhccCCeeEEEcCCCCce
Q 032928 5 MWASSTANALRISCAS---K-TPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGAS 80 (130)
Q Consensus 5 ~~~~~~~~~~~~~~~~---~-~~~~~~~r~~~~~p~~~~ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~ 80 (130)
+|+.|.++.+...... . ..+....+.+...+.+++|++.|+||..++++.++|||+||++.||+++||+||++|+.
T Consensus 14 ~~s~r~~a~~~~~~~~~~~~l~ga~~~~~~~p~~~~~~~yt~qHEWV~~~~~vgtvGIt~~A~~~LGdvv~veLPe~Gt~ 93 (172)
T KOG3373|consen 14 QWSGRGAAGLKGGMVGRGKQLNGAVSKHPPLPYALSGRKYTSQHEWVLVEGGVGTVGITDFAQEHLGDVVYVELPEVGTE 93 (172)
T ss_pred hhccccccccCccccCcccccchhhhccCCcccccccccccceeeEEEecCCeeEechhhhhhhhcCceEEEEcCCCCCc
Confidence 5666666655543211 1 22344456667788899999999999999999999999999999999999999999999
Q ss_pred EecCCeEEEEEEcceeeeeecCcceEEEEeccccccCcccccCCCCc
Q 032928 81 VKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLVIFSVNS 127 (130)
Q Consensus 81 v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~~P~llN~~~~~ 127 (130)
|.+||.++.+||.|+.++|+||++|+|+++|++|.++|.++|+||++
T Consensus 94 vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~EnPGlvN~Sp~e 140 (172)
T KOG3373|consen 94 VSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEENPGLVNESPEE 140 (172)
T ss_pred cccCcceeeeeehhhhhhhhCcCCceEEEeccccccCCCcccCCccc
Confidence 99999999999999999999999999999999999999999999985
No 9
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=99.96 E-value=4.3e-29 Score=173.57 Aligned_cols=88 Identities=60% Similarity=0.929 Sum_probs=85.0
Q ss_pred eeCceeEEEEeCC-EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccccCc
Q 032928 40 YASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETP 118 (130)
Q Consensus 40 ys~~H~Wv~~e~~-~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~~P 118 (130)
|+++|+|++.+++ .++||||+++|+++|+|.++++|++|+.|++||++++||++|++.+|+||++|+|+++|.++.+||
T Consensus 1 y~~~h~W~~~~~~~~~~lGlt~~~~~~lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~p 80 (96)
T cd06848 1 YTKDHEWVKVEGDGIATVGITDYAQDLLGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDNP 80 (96)
T ss_pred CCCCCEEEEECCCcEEEEeeCHHHHhhCCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcCh
Confidence 7889999999865 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCc
Q 032928 119 GLVIFSVNS 127 (130)
Q Consensus 119 ~llN~~~~~ 127 (130)
++||++|+.
T Consensus 81 ~~ln~~p~~ 89 (96)
T cd06848 81 ELINSDPYG 89 (96)
T ss_pred HHHhCCCCC
Confidence 999999953
No 10
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.32 E-value=4.2e-12 Score=82.83 Aligned_cols=62 Identities=44% Similarity=0.526 Sum_probs=55.1
Q ss_pred EEEeeecchhccCCeeEE-EcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccccC
Q 032928 55 TVGITDHAQDHLGEVVFV-ELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET 117 (130)
Q Consensus 55 ~vGiTd~a~~~lG~I~~v-~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~~ 117 (130)
++|++++++ .++..... .++++|+.|++||+++.+|++|+..+++||++|+|+++|.+..++
T Consensus 1 ~~~~~~~~~-~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~ 63 (73)
T cd06663 1 TILIPDLAQ-HLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTK 63 (73)
T ss_pred CcccCCCCC-CccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCE
Confidence 589999999 66665555 467999999999999999999999999999999999999888765
No 11
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.88 E-value=4.2e-09 Score=68.65 Aligned_cols=57 Identities=21% Similarity=0.297 Sum_probs=50.8
Q ss_pred eeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 58 ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 58 iTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
+|....+..|.|..+.+ +.|+.|++||+++++|++|+..++.||.+|+|.+++.+..
T Consensus 1 ~~~i~a~~~G~i~~~~v-~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G 57 (70)
T PRK08225 1 MTKVYASMAGNVWKIVV-KVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEG 57 (70)
T ss_pred CCeEeCCCCEEEEEEEe-CCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCC
Confidence 46777889999999876 6799999999999999999999999999999999876554
No 12
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=98.85 E-value=7.2e-09 Score=67.97 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=48.2
Q ss_pred cchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
...+..|.|..+.+ ++|+.|++||+++++|++|+..++.||++|+|.+++.+..
T Consensus 5 v~a~~~G~i~~~~v-~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G 58 (71)
T PRK05889 5 VRAEIVASVLEVVV-NEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVG 58 (71)
T ss_pred EeCCCCEEEEEEEe-CCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCC
Confidence 45678899998866 8899999999999999999999999999999999986554
No 13
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=98.79 E-value=9e-09 Score=76.25 Aligned_cols=54 Identities=28% Similarity=0.454 Sum_probs=48.3
Q ss_pred EeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEec
Q 032928 57 GITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN 111 (130)
Q Consensus 57 GiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN 111 (130)
+.+.....+.|.++.+ +.++||+|++||.++.||+||+..+|.||.+|+|.++-
T Consensus 69 ~~~~V~SPm~Gtv~~~-~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Il 122 (140)
T COG0511 69 GGTQVTSPMVGTVYKP-FVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEIL 122 (140)
T ss_pred cCceEecCcceEEEEE-eeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEE
Confidence 5566677888998875 44999999999999999999999999999999999994
No 14
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=98.69 E-value=4.5e-08 Score=64.81 Aligned_cols=42 Identities=31% Similarity=0.506 Sum_probs=38.5
Q ss_pred cCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 74 LPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 74 lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
+.++|+.|++||+++.||++|+..+++||.+|+|.++..+..
T Consensus 21 ~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G 62 (74)
T PF00364_consen 21 LVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEG 62 (74)
T ss_dssp SSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTT
T ss_pred EECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCC
Confidence 459999999999999999999999999999999999976543
No 15
>PRK06748 hypothetical protein; Validated
Probab=98.69 E-value=4.6e-08 Score=67.09 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=48.0
Q ss_pred cchhccCCeeEEEcCCCCceEecCCeEEEEEE-cceeeeeecCcceEEEEecccccc
Q 032928 61 HAQDHLGEVVFVELPETGASVKQGGGFGVVES-VKATSDVNSPISGEVIEVNTKLTE 116 (130)
Q Consensus 61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs-~K~~~~l~SPvsG~Vv~vN~~l~~ 116 (130)
...++.|.|..+.. ++||.|++||+++.||+ +|...++.||.+|+|.+++.+..+
T Consensus 7 v~sp~~G~I~~w~v-k~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd 62 (83)
T PRK06748 7 VYSPCYGKVEKLFV-RESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQ 62 (83)
T ss_pred EecCCcEEEEEEEe-CCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCC
Confidence 34678899998855 99999999999999999 889999999999999999866543
No 16
>PRK07051 hypothetical protein; Validated
Probab=98.48 E-value=4.2e-07 Score=61.04 Aligned_cols=55 Identities=22% Similarity=0.277 Sum_probs=45.3
Q ss_pred ecchhccCCeeE-------EEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 60 DHAQDHLGEVVF-------VELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 60 d~a~~~lG~I~~-------v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
++..+..|.+.. +. .++|+.|++||+++++|++|+..++.||++|+|.+++.+-.
T Consensus 5 ~~~ap~~g~~~~~~~~~~~~~-v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G 66 (80)
T PRK07051 5 EIVSPLPGTFYRRPSPDAPPY-VEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDG 66 (80)
T ss_pred EEeCCCceEEEecCCCCCCCc-cCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCc
Confidence 445666777665 32 37799999999999999999999999999999999875543
No 17
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.45 E-value=3.7e-07 Score=67.30 Aligned_cols=57 Identities=14% Similarity=0.254 Sum_probs=50.0
Q ss_pred eecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928 59 TDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE 116 (130)
Q Consensus 59 Td~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~ 116 (130)
......+-|.|..+.+ ++|+.|++||+++.+|++|+..+|.||.+|+|.+++.+..+
T Consensus 62 ~~v~Ap~~G~V~~i~V-~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd 118 (130)
T PRK06549 62 DAMPSPMPGTILKVLV-AVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQ 118 (130)
T ss_pred cEEECCCCEEEEEEEe-CCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCC
Confidence 3445678889988877 88999999999999999999999999999999999877653
No 18
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=98.42 E-value=8.5e-07 Score=55.59 Aligned_cols=51 Identities=31% Similarity=0.463 Sum_probs=43.5
Q ss_pred hhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccc
Q 032928 63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (130)
Q Consensus 63 ~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l 114 (130)
.+..|.+..+.+ +.|+.|++||+++.+|+.|...++.||.+|.|..++...
T Consensus 4 a~~~G~v~~~~v-~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~ 54 (67)
T cd06850 4 APMPGTVVKVLV-KEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKE 54 (67)
T ss_pred CCccEEEEEEEe-CCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECC
Confidence 355677766554 789999999999999999999999999999999997653
No 19
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=98.41 E-value=5.5e-07 Score=72.56 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=41.8
Q ss_pred CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
|.|+.+. .++||.|++||+++.||++|+..++.||.+|+|.+++.+..
T Consensus 17 g~~~~~~-~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g 64 (371)
T PRK14875 17 GKVAGWL-VQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEG 64 (371)
T ss_pred EEEEEEE-cCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCC
Confidence 5566664 48999999999999999999999999999999999876544
No 20
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.32 E-value=1.2e-06 Score=66.10 Aligned_cols=56 Identities=21% Similarity=0.348 Sum_probs=49.2
Q ss_pred eecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 59 TDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 59 Td~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
+.....+.|.|..+.. ++||.|++||.++.+|++|+..++.||.+|+|.+++.+..
T Consensus 85 ~~v~ap~~G~I~~~~V-~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~G 140 (153)
T PRK05641 85 NVVTAPMPGKILRILV-REGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEG 140 (153)
T ss_pred CEEECCCCeEEEEEEe-CCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCC
Confidence 3445778899988865 9999999999999999999999999999999999986554
No 21
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.29 E-value=1.5e-06 Score=65.36 Aligned_cols=40 Identities=28% Similarity=0.460 Sum_probs=37.0
Q ss_pred CCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccc
Q 032928 75 PETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (130)
Q Consensus 75 p~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l 114 (130)
.++|+.|++||+++.||++|+..++.||++|+|+++..+-
T Consensus 102 v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~ 141 (155)
T PRK06302 102 VEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVEN 141 (155)
T ss_pred cCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCC
Confidence 4899999999999999999999999999999999997543
No 22
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=98.26 E-value=1.5e-06 Score=65.53 Aligned_cols=55 Identities=22% Similarity=0.356 Sum_probs=45.4
Q ss_pred cchhccCCeeEE------EcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 61 HAQDHLGEVVFV------ELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 61 ~a~~~lG~I~~v------~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
....+.|.++.. -+.++|+.|++||.++.||++|+..++.||.+|+|.++..+-.
T Consensus 83 v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g 143 (156)
T TIGR00531 83 VRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENG 143 (156)
T ss_pred EeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCC
Confidence 346677777643 1348999999999999999999999999999999999975443
No 23
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=98.22 E-value=2.2e-06 Score=69.95 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=38.0
Q ss_pred CCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 75 PETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 75 p~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
.++||.|++||.|+.||++|+..+|.||.+|+|.+++.+..
T Consensus 220 VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeG 260 (274)
T PLN02983 220 VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDG 260 (274)
T ss_pred eCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCC
Confidence 38999999999999999999999999999999999986654
No 24
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=98.20 E-value=2.6e-06 Score=72.75 Aligned_cols=49 Identities=31% Similarity=0.386 Sum_probs=42.1
Q ss_pred CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE 116 (130)
Q Consensus 67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~ 116 (130)
|+|... +.++||.|++||+|++||++|...++.||.+|+|.++..+..+
T Consensus 17 G~I~~W-~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~ 65 (404)
T COG0508 17 GTIVEW-LKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGD 65 (404)
T ss_pred EEEEEE-ecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCC
Confidence 445444 4699999999999999999999999999999999999876544
No 25
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=98.19 E-value=3.9e-06 Score=73.02 Aligned_cols=70 Identities=24% Similarity=0.377 Sum_probs=53.1
Q ss_pred CceeEEEEe---CCEEEEEeeecchhccCC------eeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecc
Q 032928 42 SSHEWVKHE---GSVATVGITDHAQDHLGE------VVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNT 112 (130)
Q Consensus 42 ~~H~Wv~~e---~~~~~vGiTd~a~~~lG~------I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~ 112 (130)
.-.-|+++- .+.. .++..+.+|+ |+.+. .++||.|++||+|++||++|+..+|.||.+|+|.++..
T Consensus 76 ~~~~~~~~~~~~~~~m----~~i~mP~lg~~~~eG~I~~w~-v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv 150 (463)
T PLN02226 76 TLQRWVRPFSSESGDT----VEAVVPHMGESITDGTLATFL-KKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLV 150 (463)
T ss_pred hhhhcccccccccCCc----eEEecCCCCCCcceEEEEEEE-eCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEe
Confidence 345788862 1211 3566666664 55553 59999999999999999999999999999999999876
Q ss_pred cccc
Q 032928 113 KLTE 116 (130)
Q Consensus 113 ~l~~ 116 (130)
+..+
T Consensus 151 ~eGd 154 (463)
T PLN02226 151 KEGD 154 (463)
T ss_pred CCCC
Confidence 6543
No 26
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=98.15 E-value=4.1e-06 Score=74.86 Aligned_cols=54 Identities=22% Similarity=0.399 Sum_probs=47.8
Q ss_pred cchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
...++.|.|+.+.+ ++|+.|++||++++||++|+..+|.||++|+|.++..+..
T Consensus 528 v~apm~G~V~~~~V-~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~G 581 (596)
T PRK14042 528 ITVAIPGSIIAIHV-SAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKG 581 (596)
T ss_pred EecCcceEEEEEEe-CCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCc
Confidence 45677889998855 8899999999999999999999999999999999876554
No 27
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=98.15 E-value=4e-06 Score=72.10 Aligned_cols=48 Identities=25% Similarity=0.369 Sum_probs=41.6
Q ss_pred CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
|.|+.+. .++||.|++||++++||++|+..++.||.+|+|.++..+..
T Consensus 59 g~I~~w~-v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G 106 (418)
T PTZ00144 59 GTVVEWK-KKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEG 106 (418)
T ss_pred EEEEEEE-eCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCC
Confidence 4466553 48999999999999999999999999999999999876554
No 28
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=98.14 E-value=4e-06 Score=74.62 Aligned_cols=55 Identities=22% Similarity=0.373 Sum_probs=47.5
Q ss_pred ecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
....++.|.|+.+.+ ++|++|++||+++.||++|+..++.||++|+|.+++.+..
T Consensus 519 ~v~ap~~G~v~~~~V-~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~G 573 (582)
T TIGR01108 519 PVTAPIAGSIVKVKV-SEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVG 573 (582)
T ss_pred eEeCCccEEEEEEEe-CCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCC
Confidence 445567788888744 9999999999999999999999999999999999986544
No 29
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.10 E-value=7.2e-06 Score=72.92 Aligned_cols=76 Identities=21% Similarity=0.247 Sum_probs=60.5
Q ss_pred eeCceeEEEEeCCE------EEEEee--------ecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcce
Q 032928 40 YASSHEWVKHEGSV------ATVGIT--------DHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISG 105 (130)
Q Consensus 40 ys~~H~Wv~~e~~~------~~vGiT--------d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG 105 (130)
+..+|+|+...+.. -.+|.. ....+|-|.|+.|.+ +.|++|.+||+++++|+|||...|.+|.+|
T Consensus 543 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~aPMpG~v~~v~V-~~G~~V~~G~~lvvlEAMKME~~l~A~~dG 621 (645)
T COG4770 543 RAGGGLTLFWGGGSPRIAELDKLGGAKVAAASSGELLAPMPGTVVSVAV-KEGQEVSAGDLLVVLEAMKMENTLRAPRDG 621 (645)
T ss_pred ecCCceEEecCCcCcccccccccccccccCCCCCceecCCCceEEEEEe-cCCCEecCCCeEEEeEehhcccceecCcCc
Confidence 34667888765431 223331 144688999999977 899999999999999999999999999999
Q ss_pred EEEEecccccc
Q 032928 106 EVIEVNTKLTE 116 (130)
Q Consensus 106 ~Vv~vN~~l~~ 116 (130)
+|..+|.+..+
T Consensus 622 ~V~~v~v~~Gd 632 (645)
T COG4770 622 VVAKLAVAEGD 632 (645)
T ss_pred EEEEEEecCCC
Confidence 99999877654
No 30
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=98.07 E-value=6.6e-06 Score=73.46 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=45.9
Q ss_pred hhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 63 ~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
..+.|.|..+.+ ++|+.|++||++++||++|+..+|.||.+|+|.+++.+..
T Consensus 529 Ap~~G~I~~~~V-~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~G 580 (593)
T PRK14040 529 APLAGNIFKVIV-TEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEG 580 (593)
T ss_pred CCccEEEEEEEe-CCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCC
Confidence 455677887755 9999999999999999999999999999999999986654
No 31
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.02 E-value=8.4e-06 Score=77.66 Aligned_cols=58 Identities=22% Similarity=0.365 Sum_probs=49.9
Q ss_pred EeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 57 GITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 57 GiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
|......++.|.|+.+.+ ++||+|++||+++.||++|+..+|.||.+|+|.+++.+..
T Consensus 1131 ~~~~v~a~~~G~v~~~~v-~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G 1188 (1201)
T TIGR02712 1131 GAEQVESEYAGNFWKVLV-EVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPG 1188 (1201)
T ss_pred CCcEEeCCceEEEEEEEe-CCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCC
Confidence 334455677899998855 8999999999999999999999999999999999986554
No 32
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=97.98 E-value=1.3e-05 Score=76.18 Aligned_cols=54 Identities=24% Similarity=0.399 Sum_probs=47.8
Q ss_pred cchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
.+..+.|.|+.+.+ ++|++|++||++++||++|+..+|.||++|+|.+++.+..
T Consensus 1077 I~a~~~G~v~~~~v-~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G 1130 (1143)
T TIGR01235 1077 VGAPMPGVIIEVKV-SSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAG 1130 (1143)
T ss_pred eecCCCcEEEEEEe-CCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCC
Confidence 44677888988866 8899999999999999999999999999999999986654
No 33
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=97.91 E-value=2e-05 Score=67.39 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=41.3
Q ss_pred CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
|.|..+ +.++|+.|++||+++.||++|+..++.||.+|+|.++..+..
T Consensus 17 g~i~~w-~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G 64 (407)
T PRK05704 17 ATIATW-HKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEG 64 (407)
T ss_pred EEEEEE-EeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCC
Confidence 445555 348999999999999999999999999999999998876554
No 34
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=97.88 E-value=2.4e-05 Score=69.83 Aligned_cols=53 Identities=30% Similarity=0.457 Sum_probs=46.1
Q ss_pred chhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 62 AQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 62 a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
..++.|.|..+.+ ++|++|++||+++.||++|+..+|.||++|+|.+++.+..
T Consensus 526 ~Ap~~G~v~~~~V-~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G 578 (592)
T PRK09282 526 TSPMPGTVVKVKV-KEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEG 578 (592)
T ss_pred eCCCcEEEEEEEe-CCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCC
Confidence 3455677887755 8999999999999999999999999999999999986654
No 35
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=97.87 E-value=1.7e-05 Score=73.11 Aligned_cols=51 Identities=33% Similarity=0.508 Sum_probs=46.6
Q ss_pred chhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccc
Q 032928 62 AQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTK 113 (130)
Q Consensus 62 a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~ 113 (130)
+..+.|.|+.|.+ +.|++|++||+++++|+||+...|.+|++|+|.++-..
T Consensus 1083 gApmpG~Vv~v~V-~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~ 1133 (1149)
T COG1038 1083 GAPMPGVVVEVKV-KKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVK 1133 (1149)
T ss_pred CCCCCCceEEEEE-ccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEec
Confidence 3678999999876 89999999999999999999999999999999999543
No 36
>PRK12999 pyruvate carboxylase; Reviewed
Probab=97.85 E-value=2.2e-05 Score=74.54 Aligned_cols=54 Identities=30% Similarity=0.442 Sum_probs=47.5
Q ss_pred cchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
...++.|.|+.+.+ ++|+.|++||+++.+|++|+..+|.||++|+|.+++.+..
T Consensus 1079 v~apm~G~v~~i~v-~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g 1132 (1146)
T PRK12999 1079 VGAPMPGSVVTVLV-KEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAG 1132 (1146)
T ss_pred EeCCceEEEEEEEc-CCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCC
Confidence 44567788888866 8999999999999999999999999999999999986543
No 37
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=97.82 E-value=3.6e-05 Score=65.86 Aligned_cols=48 Identities=27% Similarity=0.281 Sum_probs=41.1
Q ss_pred CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
|.|+.+ +.++||.|++||++++||++|+..++.||.+|+|.++..+..
T Consensus 15 g~i~~w-~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG 62 (403)
T TIGR01347 15 GTVAEW-HKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEG 62 (403)
T ss_pred EEEEEE-EeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCC
Confidence 445554 458999999999999999999999999999999998876554
No 38
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=97.71 E-value=5.8e-05 Score=67.32 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=41.2
Q ss_pred CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
|.|... +.++||.|++||+++.||++|+..++.||.+|+|.++..+..
T Consensus 150 g~i~~w-~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G 197 (590)
T TIGR02927 150 GTITQW-LKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEED 197 (590)
T ss_pred EEEEEE-EeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCC
Confidence 345554 458999999999999999999999999999999998876554
No 39
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=97.68 E-value=6.2e-05 Score=66.51 Aligned_cols=55 Identities=31% Similarity=0.420 Sum_probs=44.5
Q ss_pred ecchhccCC-----eeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 60 DHAQDHLGE-----VVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 60 d~a~~~lG~-----I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
++.+..+|+ |..+ +.++||.|++||++++||++|+..+|.||.+|+|.+++.+..
T Consensus 118 ~~~~P~~g~~~eg~i~~w-~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G 177 (546)
T TIGR01348 118 EVTVPDIGDIEKVTVIEV-LVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVG 177 (546)
T ss_pred EEeCCCCCCcceeEEeEE-eeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCC
Confidence 444555554 4443 358999999999999999999999999999999999886653
No 40
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=97.64 E-value=9.4e-05 Score=66.35 Aligned_cols=48 Identities=31% Similarity=0.324 Sum_probs=41.2
Q ss_pred cCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccc
Q 032928 66 LGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (130)
Q Consensus 66 lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l 114 (130)
-|.|..+. .++|+.|++||+|+.||++|+..++.||.+|+|.++..+.
T Consensus 14 eg~i~~~~-v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~ 61 (633)
T PRK11854 14 EVEVTEIL-VKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKV 61 (633)
T ss_pred eEEEEEEE-eCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCC
Confidence 35666654 4899999999999999999999999999999999887633
No 41
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=97.57 E-value=0.00015 Score=65.16 Aligned_cols=47 Identities=30% Similarity=0.367 Sum_probs=39.4
Q ss_pred CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccc
Q 032928 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (130)
Q Consensus 67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l 114 (130)
|.|+.+. .++||.|++||++++||++|+..++.||.+|+|.++..+.
T Consensus 219 g~v~~w~-v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~ 265 (633)
T PRK11854 219 VEVTEVM-VKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNV 265 (633)
T ss_pred eEEEEEE-ecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCC
Confidence 4444442 4889999999999999999999999999999998876544
No 42
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=97.53 E-value=0.00038 Score=42.61 Aligned_cols=48 Identities=29% Similarity=0.407 Sum_probs=40.6
Q ss_pred CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
|.|..+.. ..|+.+.+|++++.+|+.|...++.+|.+|+|.+.+....
T Consensus 15 g~i~~~~~-~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g 62 (74)
T cd06849 15 GTIVEWLV-KEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEG 62 (74)
T ss_pred EEEEEEEE-CCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCc
Confidence 45555444 7899999999999999999999999999999998885543
No 43
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=97.49 E-value=0.00019 Score=63.22 Aligned_cols=47 Identities=34% Similarity=0.458 Sum_probs=39.8
Q ss_pred CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccc
Q 032928 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (130)
Q Consensus 67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l 114 (130)
|.|... +.++||.|++||+++.||++|+..++.||.+|+|.++..+.
T Consensus 133 g~i~~w-~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~ 179 (547)
T PRK11855 133 VEVIEW-LVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKV 179 (547)
T ss_pred eEEeEE-EeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCC
Confidence 334443 34899999999999999999999999999999999876554
No 44
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=97.48 E-value=0.00082 Score=47.42 Aligned_cols=87 Identities=13% Similarity=0.148 Sum_probs=57.0
Q ss_pred cccccccCCcceeeCceeEEEEe-CCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceE
Q 032928 28 SRCFSSVLDGLKYASSHEWVKHE-GSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGE 106 (130)
Q Consensus 28 ~r~~~~~p~~~~ys~~H~Wv~~e-~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~ 106 (130)
||+.-..|+...++.+-...+.. -+.+.|=| ++..|.-.. -+.++||+|++||.|+..+. -....++||+||+
T Consensus 3 F~GGihp~~~K~~s~~~~i~~~~~p~~v~ipL----~qh~G~~~~-p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~ 76 (101)
T PF13375_consen 3 FRGGIHPPEHKELSKDKPIEEAPLPKKVVIPL----RQHIGAPAE-PVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGT 76 (101)
T ss_pred cCCccCCCCccccccCCCeEECCCcCEEEEEC----cccCCCcce-EEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeE
Confidence 44444444444445555544433 34555544 344554333 24589999999999999975 4467999999999
Q ss_pred EEEeccccccCccc
Q 032928 107 VIEVNTKLTETPGL 120 (130)
Q Consensus 107 Vv~vN~~l~~~P~l 120 (130)
|.++.....-++..
T Consensus 77 V~~I~~~~~~~g~~ 90 (101)
T PF13375_consen 77 VTAIEKRPIPHGSK 90 (101)
T ss_pred EEEEeeeEcCCCCC
Confidence 99998777665544
No 45
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=97.38 E-value=0.00035 Score=59.96 Aligned_cols=45 Identities=27% Similarity=0.285 Sum_probs=39.3
Q ss_pred CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecc
Q 032928 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNT 112 (130)
Q Consensus 67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~ 112 (130)
|+|..+ +.++|+.|++||+++.+|++|+..++.||.+|+|.++..
T Consensus 13 g~i~~w-~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v 57 (416)
T PLN02528 13 CELLRW-FVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINF 57 (416)
T ss_pred EEEEEE-EeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEe
Confidence 455555 348999999999999999999999999999999988765
No 46
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=97.38 E-value=0.00011 Score=62.80 Aligned_cols=63 Identities=30% Similarity=0.372 Sum_probs=47.7
Q ss_pred CEEEEEeeecchhcc-CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 52 SVATVGITDHAQDHL-GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 52 ~~~~vGiTd~a~~~l-G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
+.+++-.-.|+-..- |++-.. +.++||.|++++.+++||++|...++.||.+|+|.+++.+-.
T Consensus 71 s~vtv~vP~faESiteG~l~~~-lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~g 134 (457)
T KOG0559|consen 71 SVVTVEVPPFAESITEGDLAQW-LKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDG 134 (457)
T ss_pred ceeEEecCCcccccccchHHHH-hhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCC
Confidence 355565545544332 444422 468999999999999999999999999999999999965443
No 47
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=97.37 E-value=0.00039 Score=61.53 Aligned_cols=48 Identities=33% Similarity=0.432 Sum_probs=41.7
Q ss_pred CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
|.|+.+. .++|+.|++||++++||++|+..++.||.+|+|.+++.+..
T Consensus 14 g~i~~~~-v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~G 61 (546)
T TIGR01348 14 GEVIEVL-VKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVG 61 (546)
T ss_pred eEEEEEE-eCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCC
Confidence 5566653 48999999999999999999999999999999998887553
No 48
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=97.37 E-value=0.00037 Score=61.44 Aligned_cols=48 Identities=31% Similarity=0.386 Sum_probs=41.5
Q ss_pred CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
|.|..+.+ ++|+.|++||+++.||++|+..++.||.+|+|.+++.+..
T Consensus 16 g~i~~~~v-~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~G 63 (547)
T PRK11855 16 VEVIEWLV-KEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVG 63 (547)
T ss_pred EEEEEEEc-CCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCC
Confidence 45665543 9999999999999999999999999999999999886543
No 49
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=97.33 E-value=0.00047 Score=58.53 Aligned_cols=49 Identities=35% Similarity=0.511 Sum_probs=41.5
Q ss_pred CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE 116 (130)
Q Consensus 67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~ 116 (130)
|.|... +.++|+.+++||+++.||++|...++.||.+|+|.+++.+..+
T Consensus 17 g~i~~w-~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~ 65 (411)
T PRK11856 17 GEIVEW-LVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGD 65 (411)
T ss_pred EEEEEE-EeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCC
Confidence 345544 3489999999999999999999999999999999988766554
No 50
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=97.29 E-value=0.00043 Score=59.74 Aligned_cols=50 Identities=20% Similarity=0.239 Sum_probs=42.5
Q ss_pred CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccccC
Q 032928 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET 117 (130)
Q Consensus 67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~~ 117 (130)
|+|..+ +.++|+.+++||+++.||++|+..++.||.+|+|.+++.+..+.
T Consensus 14 g~i~~w-~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~ 63 (435)
T TIGR01349 14 GNLAKW-LKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTK 63 (435)
T ss_pred EEEEEE-EeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCE
Confidence 344443 34899999999999999999999999999999999988777653
No 51
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=97.16 E-value=0.00071 Score=60.07 Aligned_cols=48 Identities=23% Similarity=0.236 Sum_probs=40.8
Q ss_pred CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
|+|... +.++||.|++||+++.||++|...++.||.+|+|.++..+..
T Consensus 127 g~I~~W-~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG 174 (539)
T PLN02744 127 GNIARW-LKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDG 174 (539)
T ss_pred eEEEEE-EecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCC
Confidence 445543 358999999999999999999999999999999988875554
No 52
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=97.01 E-value=0.0021 Score=48.64 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=37.9
Q ss_pred hccCCeeEEEcCCCCceEecCCeEEEEEEcce-eeeeecCcceEEEEeccccc
Q 032928 64 DHLGEVVFVELPETGASVKQGGGFGVVESVKA-TSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 64 ~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~-~~~l~SPvsG~Vv~vN~~l~ 115 (130)
..-|-.++. ...+|++|.+||.++.+.|.|. +.-++||++|+|+.+++.=.
T Consensus 86 ~veG~~v~~-i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e~p~ 137 (150)
T PF09891_consen 86 PVEGYQVYP-IVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIEIPW 137 (150)
T ss_dssp EEESSEEEE-SS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEEETT
T ss_pred EecceEEEE-EcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEecCC
Confidence 444666654 5689999999999999999996 77799999999999997654
No 53
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=96.99 E-value=0.0014 Score=57.19 Aligned_cols=49 Identities=24% Similarity=0.263 Sum_probs=41.2
Q ss_pred CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE 116 (130)
Q Consensus 67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~ 116 (130)
|.|..+ +.++|+.+++||.++.||++|+..++.||.+|+|.++..+..+
T Consensus 17 g~i~~w-~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~ 65 (464)
T PRK11892 17 GTLAKW-LKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGT 65 (464)
T ss_pred eEEEEE-EecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCC
Confidence 334443 3488999999999999999999999999999999888776653
No 54
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=96.99 E-value=0.0015 Score=58.35 Aligned_cols=45 Identities=18% Similarity=0.281 Sum_probs=39.1
Q ss_pred eeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccc
Q 032928 69 VVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (130)
Q Consensus 69 I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l 114 (130)
|..+. .++|+.|+.||+++.+|++|+..++.||.+|.|.+++.+.
T Consensus 19 i~~w~-v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~ 63 (590)
T TIGR02927 19 ITQWL-KAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEE 63 (590)
T ss_pred EEEEE-ECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecC
Confidence 54443 5899999999999999999999999999999998876644
No 55
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=96.91 E-value=0.0013 Score=60.46 Aligned_cols=51 Identities=27% Similarity=0.434 Sum_probs=46.8
Q ss_pred cchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecc
Q 032928 61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNT 112 (130)
Q Consensus 61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~ 112 (130)
.+.++.|+|..+.+ ++|++|++||+++++-++|+..-+.||.+|+|.++..
T Consensus 1109 igAPMpG~vieikv-k~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v 1159 (1176)
T KOG0369|consen 1109 IGAPMPGTVIEIKV-KEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHV 1159 (1176)
T ss_pred ccCCCCCceEEEEE-ecCceecCCCceEeeecceeeeeecCCCCceeeEEEe
Confidence 34789999999988 8899999999999999999999999999999998863
No 56
>KOG3266 consensus Predicted glycine cleavage system H protein [Amino acid transport and metabolism]
Probab=96.77 E-value=0.0054 Score=46.88 Aligned_cols=85 Identities=19% Similarity=0.259 Sum_probs=61.3
Q ss_pred CceeEEEEeCCEEEEEeeec--chhccCCeeEEEcCCCC-----------------ceEecCCeEEEEEEcc-eeeeeec
Q 032928 42 SSHEWVKHEGSVATVGITDH--AQDHLGEVVFVELPETG-----------------ASVKQGGGFGVVESVK-ATSDVNS 101 (130)
Q Consensus 42 ~~H~Wv~~e~~~~~vGiTd~--a~~~lG~I~~v~lp~vG-----------------~~v~~Gd~l~~IEs~K-~~~~l~S 101 (130)
.+|.-.+..+..+.|++-.- +.+.-+.|..++. ++| ..++...+++.+-..+ ...-++|
T Consensus 33 ~D~~i~~HsnricvI~la~~hp~l~~g~~i~sv~~-~ign~dRsqnkVSGK~KkgAl~lq~~s~Lc~~~~a~g~~y~V~s 111 (172)
T KOG3266|consen 33 YDHCIYQHSNRICVITLAPSHPALQSGKTIKSVTF-QIGNCDRSQNKVSGKGKKGALILQELSPLCKFKTADGSTYVVRS 111 (172)
T ss_pred CCceEEecCCceEEEEecCCCchhhcccceeeeec-ccccchhhhheeccccccccEeeccCCcceeEEecCCCeEEEee
Confidence 44665566677888887543 3344455666665 333 3345556677776666 6788999
Q ss_pred CcceEEEEeccccccCcccccCCCCc
Q 032928 102 PISGEVIEVNTKLTETPGLVIFSVNS 127 (130)
Q Consensus 102 PvsG~Vv~vN~~l~~~P~llN~~~~~ 127 (130)
=|-|++++||+.+..+|+++++.|+.
T Consensus 112 cVrG~LvEvN~rl~~~P~ll~~~pd~ 137 (172)
T KOG3266|consen 112 CVRGTLVEVNERLKTTPDLLREAPDN 137 (172)
T ss_pred eeceeEEEeehhhccCcHHHHhCCCc
Confidence 99999999999999999999998874
No 57
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=96.74 E-value=0.002 Score=56.22 Aligned_cols=58 Identities=22% Similarity=0.234 Sum_probs=48.8
Q ss_pred EEEEEeeecchhc-cCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEec
Q 032928 53 VATVGITDHAQDH-LGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN 111 (130)
Q Consensus 53 ~~~vGiTd~a~~~-lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN 111 (130)
..+|+|-..---| -|.|+... .++||++.+||.|++||++|+..++.++-+|.+-+|-
T Consensus 38 h~~i~MPALSPTMeeGnIvsW~-kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKIL 96 (470)
T KOG0557|consen 38 HKTFSMPALSPTMEEGNIVSWK-KKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKIL 96 (470)
T ss_pred ceEeecCCCCccccCCceeeEe-eccCCccCCCceEEEEecccceeeeeeccCCeeeeee
Confidence 4567776555444 59999874 4999999999999999999999999999999998874
No 58
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=96.62 E-value=0.002 Score=55.09 Aligned_cols=57 Identities=25% Similarity=0.350 Sum_probs=47.5
Q ss_pred EeeecchhccCC-eeEEEc----CCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccc
Q 032928 57 GITDHAQDHLGE-VVFVEL----PETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTK 113 (130)
Q Consensus 57 GiTd~a~~~lG~-I~~v~l----p~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~ 113 (130)
|+-+|.+.++|+ |-.|++ .++||.|++=|+++.|.|+|+..+|.|-.+|+|..+.-.
T Consensus 63 gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~ 124 (474)
T KOG0558|consen 63 GVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHS 124 (474)
T ss_pred ceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeC
Confidence 445666777777 666665 589999999999999999999999999999999887543
No 59
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=96.28 E-value=0.003 Score=56.23 Aligned_cols=55 Identities=25% Similarity=0.323 Sum_probs=49.1
Q ss_pred chhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccccC
Q 032928 62 AQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET 117 (130)
Q Consensus 62 a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~~ 117 (130)
..++.|-|..|-+ ++|+.+++||+++++|++|+...+.+|-+|+|..++.++.++
T Consensus 605 ~aPMpG~Iekv~V-kpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~ 659 (670)
T KOG0238|consen 605 VAPMPGIIEKVLV-KPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGAT 659 (670)
T ss_pred ecCCCCeeeeeec-cchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcc
Confidence 4567788887744 999999999999999999999999999999999999988765
No 60
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=96.16 E-value=0.0059 Score=53.09 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=30.5
Q ss_pred cCCCCceEecCCeEEEEEEcce-eeeeecCcceEEEEec
Q 032928 74 LPETGASVKQGGGFGVVESVKA-TSDVNSPISGEVIEVN 111 (130)
Q Consensus 74 lp~vG~~v~~Gd~l~~IEs~K~-~~~l~SPvsG~Vv~vN 111 (130)
+.++||+|++||+|+. +... -..++||+||+|.+|+
T Consensus 45 ~V~~GD~V~~Gq~I~~--~~~~~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 45 KVKEGDKVKKGQPLFE--DKKNPGVKFTSPASGTVVAIN 81 (448)
T ss_pred EeCcCCEEcCCCEeEe--cCCCceEEEEcCCCeEEEEEc
Confidence 3489999999999994 4443 4889999999999997
No 61
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=95.95 E-value=0.015 Score=49.47 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=41.6
Q ss_pred hccCCeeEEEcCCCCceEecCCeEEEEEEcc------------------------------------------------e
Q 032928 64 DHLGEVVFVELPETGASVKQGGGFGVVESVK------------------------------------------------A 95 (130)
Q Consensus 64 ~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K------------------------------------------------~ 95 (130)
..-|.|..+....+|++|++||+|++|++.. .
T Consensus 129 rv~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~ 208 (409)
T PRK09783 129 RAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQT 208 (409)
T ss_pred CcCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCC
Confidence 3457777766468999999999999998421 1
Q ss_pred eeeeecCcceEEEEecccccc
Q 032928 96 TSDVNSPISGEVIEVNTKLTE 116 (130)
Q Consensus 96 ~~~l~SPvsG~Vv~vN~~l~~ 116 (130)
-..|+||++|.|.+.|....+
T Consensus 209 ~~~I~AP~dGvV~~~~v~~G~ 229 (409)
T PRK09783 209 RFTLKAPIDGVITAFDLRAGM 229 (409)
T ss_pred cEEEECCCCeEEEEEECCCCC
Confidence 247999999999999987763
No 62
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=95.94 E-value=0.01 Score=48.44 Aligned_cols=38 Identities=29% Similarity=0.327 Sum_probs=30.5
Q ss_pred CCCCceEecCCeEEEEEEcce-eeeeecCcceEEEEecccc
Q 032928 75 PETGASVKQGGGFGVVESVKA-TSDVNSPISGEVIEVNTKL 114 (130)
Q Consensus 75 p~vG~~v~~Gd~l~~IEs~K~-~~~l~SPvsG~Vv~vN~~l 114 (130)
.++||+|++||+++. ..|. -.-+.||+||+|.+||.-.
T Consensus 45 VkeGD~Vk~Gq~LF~--dK~~p~v~ftsPvsG~V~~I~RG~ 83 (257)
T PF05896_consen 45 VKEGDRVKAGQPLFE--DKKNPGVKFTSPVSGTVKAINRGE 83 (257)
T ss_pred eccCCEEeCCCeeEe--eCCCCCcEEecCCCeEEEEEecCC
Confidence 389999999999984 3332 4558999999999999743
No 63
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=95.77 E-value=0.012 Score=53.80 Aligned_cols=80 Identities=13% Similarity=0.083 Sum_probs=48.5
Q ss_pred cccccccCCcceeeCceeEEEE-eCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcc-eeeeeecCcce
Q 032928 28 SRCFSSVLDGLKYASSHEWVKH-EGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVK-ATSDVNSPISG 105 (130)
Q Consensus 28 ~r~~~~~p~~~~ys~~H~Wv~~-e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K-~~~~l~SPvsG 105 (130)
|++.-..|+...++.+..--.. -...+.|=| ++.+|.-... +.++||+|.+||+|+. +.. ....++||+||
T Consensus 10 f~gGihp~~~k~~s~~~~i~~~~~p~~~~ipl----~qhiG~~~~~-~V~~GD~V~~GQ~i~~--~~~~~s~~vhApvSG 82 (695)
T PRK05035 10 FPGGIHPPEMKTQSNGTPIRQAPLPQRLVIPL----KQHIGAEGEL-CVKVGDRVLKGQPLTQ--GDGRMSLPVHAPTSG 82 (695)
T ss_pred CCCCcCCCcccccccCCCccccCCCCEEEEEC----ccCCCCCCcc-eeCcCCEEcCCCEeee--cCCCceeEEeCCCCe
Confidence 3344444555445544331111 123455544 3344543322 3489999999999994 444 35889999999
Q ss_pred EEEEecccc
Q 032928 106 EVIEVNTKL 114 (130)
Q Consensus 106 ~Vv~vN~~l 114 (130)
+|++|+...
T Consensus 83 ~V~~I~~~~ 91 (695)
T PRK05035 83 TVVAIEPHP 91 (695)
T ss_pred EEeeecccc
Confidence 999998653
No 64
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=95.66 E-value=0.012 Score=50.68 Aligned_cols=39 Identities=18% Similarity=0.444 Sum_probs=32.6
Q ss_pred cCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccc
Q 032928 74 LPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTK 113 (130)
Q Consensus 74 lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~ 113 (130)
+.++||+|++||.|+.-+. ..-..++||+||+|.+|+..
T Consensus 46 ~V~~Gd~V~~Gq~i~~~~~-~~~~~~ha~vsG~V~~i~~~ 84 (435)
T TIGR01945 46 IVKVGDKVLKGQKIAKADG-FVSAPIHAPTSGTVVAIEER 84 (435)
T ss_pred eeCCCCEECCCCEeccCCC-cceeeeecCCCeEEEEeccc
Confidence 3489999999999998833 24678999999999999853
No 65
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=95.64 E-value=0.011 Score=51.41 Aligned_cols=38 Identities=29% Similarity=0.372 Sum_probs=31.7
Q ss_pred cCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecc
Q 032928 74 LPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNT 112 (130)
Q Consensus 74 lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~ 112 (130)
+.++||+|++||+|+.-... .-..++||+||+|.+++.
T Consensus 44 ~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 44 KVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR 81 (447)
T ss_pred EeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence 34899999999999976433 457899999999999965
No 66
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.95 E-value=0.075 Score=43.18 Aligned_cols=50 Identities=24% Similarity=0.339 Sum_probs=38.3
Q ss_pred CCeeEEEcCCCCceEecCCeEEEEEE--cceeeeeecCcceEEEEeccccccC
Q 032928 67 GEVVFVELPETGASVKQGGGFGVVES--VKATSDVNSPISGEVIEVNTKLTET 117 (130)
Q Consensus 67 G~I~~v~lp~vG~~v~~Gd~l~~IEs--~K~~~~l~SPvsG~Vv~vN~~l~~~ 117 (130)
+-+... ..+.|+.|++||.++.|.. .....+++||.+|.|........-.
T Consensus 227 ~G~~~~-~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~~~~~v~ 278 (287)
T cd06251 227 GGLLRS-LVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRNNLPLVN 278 (287)
T ss_pred CeEEEE-ecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEecCCCccC
Confidence 444433 4589999999999999976 3456899999999999877655433
No 67
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=94.79 E-value=0.03 Score=34.31 Aligned_cols=32 Identities=28% Similarity=0.289 Sum_probs=26.6
Q ss_pred hhccCCeeEEEcCCCCceEecCCeEEEEEEcce
Q 032928 63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKA 95 (130)
Q Consensus 63 ~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~ 95 (130)
.+.-|.|..+.+ +.|+.|++||+|+++++...
T Consensus 7 ~~~~G~V~~v~V-~~G~~VkkGd~L~~ld~~~~ 38 (50)
T PF13533_consen 7 APVSGRVESVYV-KEGQQVKKGDVLLVLDSPDL 38 (50)
T ss_pred CCCCEEEEEEEe-cCCCEEcCCCEEEEECcHHH
Confidence 455788888866 89999999999999987643
No 68
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=94.77 E-value=0.037 Score=49.18 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=39.0
Q ss_pred CCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccccCcccc
Q 032928 76 ETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPGLV 121 (130)
Q Consensus 76 ~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~~P~ll 121 (130)
++||+|.+||+++.=|+ ....++||+||+|.++-.+..-+|+-+
T Consensus 50 kvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~~~~~~~~sgl 93 (529)
T COG4656 50 KVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIEPANFPHPSGL 93 (529)
T ss_pred eeCCEEeeCceeeccCC--ceeeeeCCCCceeeeeeecccCCcccC
Confidence 89999999999998877 889999999999999987777777644
No 69
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.63 E-value=0.1 Score=42.85 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=36.5
Q ss_pred EcCCCCceEecCCeEEEEEE---cceeeeeecCcceEEEEecccccc
Q 032928 73 ELPETGASVKQGGGFGVVES---VKATSDVNSPISGEVIEVNTKLTE 116 (130)
Q Consensus 73 ~lp~vG~~v~~Gd~l~~IEs---~K~~~~l~SPvsG~Vv~vN~~l~~ 116 (130)
-..+.|+.|++||.++.|-. .....+++||.+|.|...+....-
T Consensus 242 ~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~~~p~v 288 (298)
T cd06253 242 PAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLREYPLV 288 (298)
T ss_pred ECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEeecCCee
Confidence 34688999999999999965 345889999999999998876543
No 70
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=94.43 E-value=0.13 Score=43.00 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=29.1
Q ss_pred eeecchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928 58 ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 58 iTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
..+...+.-|.|..+.+ ++|+.|++||.|+.|++.
T Consensus 61 ~~~l~~~v~G~V~~i~v-~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 61 VAEIRPQVGGIIIKRNF-IEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred EEEEeccCcEEEEEEEc-CCcCEecCCCEEEEECcH
Confidence 34555677899998877 899999999999999864
No 71
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=94.36 E-value=0.068 Score=44.68 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=27.4
Q ss_pred ecchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
+...+.-|.|..+.+ ++|+.|++||.|+.|++.
T Consensus 65 ~l~~~v~G~V~~v~v-~~Gd~VkkGq~La~ld~~ 97 (385)
T PRK09578 65 EVRARVAGIVTARTY-EEGQEVKQGAVLFRIDPA 97 (385)
T ss_pred EEeccCcEEEEEEEC-CCCCEEcCCCEEEEECCH
Confidence 444667799988855 899999999999999874
No 72
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=94.10 E-value=0.13 Score=40.77 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=24.8
Q ss_pred chhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928 62 AQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 62 a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
..+.-|.|..+.+ ++|+.|++||+|+.+++.
T Consensus 30 ~a~~~G~V~~i~v-~~G~~V~kG~~L~~l~~~ 60 (322)
T TIGR01730 30 AAEVAGKITKISV-REGQKVKKGQVLARLDDD 60 (322)
T ss_pred EccccEEEEEEEc-CCCCEEcCCCEEEEECCH
Confidence 3455588887755 799999999999999763
No 73
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=94.09 E-value=0.11 Score=42.33 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=30.3
Q ss_pred cCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEec
Q 032928 74 LPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN 111 (130)
Q Consensus 74 lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN 111 (130)
..+.|+.|++||.++.|++ .+++||++|.|.-+=
T Consensus 178 ~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGli 211 (256)
T TIGR03309 178 TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGLI 211 (256)
T ss_pred ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEEe
Confidence 5689999999999999976 699999999998763
No 74
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=93.73 E-value=0.21 Score=42.61 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=28.1
Q ss_pred eeecchhccCCeeEEEcCCCCceEecCCeEEEEEE
Q 032928 58 ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVES 92 (130)
Q Consensus 58 iTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs 92 (130)
......+.-|.|..+.+ ++|+.|++||.|+.|.+
T Consensus 87 ~v~v~~~vsG~V~~i~v-~eG~~VkkGq~La~ld~ 120 (415)
T PRK11556 87 TVTVRSRVDGQLMALHF-QEGQQVKAGDLLAEIDP 120 (415)
T ss_pred EEEEEccccEEEEEEEC-CCCCEecCCCEEEEECc
Confidence 34445677899998876 89999999999999965
No 75
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=93.67 E-value=0.13 Score=42.77 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=27.3
Q ss_pred ecchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
....+.-|.|..+.+ ++|+.|++||.|+.|++.
T Consensus 63 ~l~a~~~G~V~~v~v-~~G~~V~kG~~L~~ld~~ 95 (370)
T PRK11578 63 DVGAQVSGQLKTLSV-AIGDKVKKDQLLGVIDPE 95 (370)
T ss_pred EEecccceEEEEEEc-CCCCEEcCCCEEEEECcH
Confidence 334566799998875 899999999999999873
No 76
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=93.61 E-value=0.19 Score=41.93 Aligned_cols=42 Identities=14% Similarity=0.080 Sum_probs=34.9
Q ss_pred cCCCCceEecCCeEEEEEE----cceeeeeecCcceEEEEeccccc
Q 032928 74 LPETGASVKQGGGFGVVES----VKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 74 lp~vG~~v~~Gd~l~~IEs----~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
..+.|+.|++||.++.|-. .+...+++||.+|.|...+..-.
T Consensus 269 ~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~~~~~ 314 (325)
T TIGR02994 269 MIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARHFPGL 314 (325)
T ss_pred ecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEeCCCc
Confidence 4588999999999999965 33578899999999999876543
No 77
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=93.48 E-value=0.22 Score=41.02 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=34.4
Q ss_pred CCCCceEecCCeEEEEEEc----ceeeeeecCcceEEEEecccc
Q 032928 75 PETGASVKQGGGFGVVESV----KATSDVNSPISGEVIEVNTKL 114 (130)
Q Consensus 75 p~vG~~v~~Gd~l~~IEs~----K~~~~l~SPvsG~Vv~vN~~l 114 (130)
.+.|+.|++||.++.|-.. +...+++||.+|.|...+...
T Consensus 259 ~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~~~~ 302 (316)
T cd06252 259 VDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARRPPG 302 (316)
T ss_pred cCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEeeCCC
Confidence 4789999999999999653 457899999999999988655
No 78
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=93.29 E-value=0.25 Score=40.12 Aligned_cols=41 Identities=22% Similarity=0.405 Sum_probs=34.6
Q ss_pred CCCCceEecCCeEEEEEE--cceeeeeecCcceEEEEeccccc
Q 032928 75 PETGASVKQGGGFGVVES--VKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 75 p~vG~~v~~Gd~l~~IEs--~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
.+.|+.|++||.++.|-. .....+++||.+|.|...+..-.
T Consensus 238 ~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~~~~ 280 (288)
T cd06254 238 VKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTATLP 280 (288)
T ss_pred cCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeCCCc
Confidence 478999999999999944 45688999999999999887543
No 79
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=93.19 E-value=0.22 Score=40.72 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=37.3
Q ss_pred cchhccCCeeEEEcCCCCceEecCCeEEEEEE--cceeeeeecCcceEEEEec
Q 032928 61 HAQDHLGEVVFVELPETGASVKQGGGFGVVES--VKATSDVNSPISGEVIEVN 111 (130)
Q Consensus 61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs--~K~~~~l~SPvsG~Vv~vN 111 (130)
+.....|-+..-. .+.|+.|++||.++.|-. .....+++||.+|.|...|
T Consensus 233 ~v~Ap~~Gi~~~~-~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~~ 284 (293)
T cd06255 233 WVAAIHGGLFEPS-VPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGIH 284 (293)
T ss_pred EEecCCCeEEEEe-cCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee
Confidence 3333344455443 488999999999999965 3457789999999999984
No 80
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.34 E-value=0.22 Score=37.57 Aligned_cols=47 Identities=23% Similarity=0.510 Sum_probs=39.1
Q ss_pred cCCCCceEecCCeEEEEEEcce-eeeeecCcceEEEEeccccccCccc
Q 032928 74 LPETGASVKQGGGFGVVESVKA-TSDVNSPISGEVIEVNTKLTETPGL 120 (130)
Q Consensus 74 lp~vG~~v~~Gd~l~~IEs~K~-~~~l~SPvsG~Vv~vN~~l~~~P~l 120 (130)
+..+|+++.+||+++.+-+-|. +.=+.+|+.|+|+-+-+--...|+.
T Consensus 106 IaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi~E~t~kRpnY 153 (161)
T COG4072 106 IADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYIDEFTNKRPNY 153 (161)
T ss_pred eecccchhcCCCceeEEEecccceEEecCCCCcEEEEEeecccCCCce
Confidence 4588999999999999999885 6668999999999998755555553
No 81
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=92.32 E-value=0.19 Score=49.87 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=41.0
Q ss_pred hccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEec
Q 032928 64 DHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN 111 (130)
Q Consensus 64 ~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN 111 (130)
+..|+.+... .+.|+.|++||+-++||.||++.++.++.+|.|.-+-
T Consensus 691 Ps~GKLl~yl-VedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~~i~ 737 (2196)
T KOG0368|consen 691 PSPGKLLQYL-VEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQLIK 737 (2196)
T ss_pred CCCccceEEE-ecCCCceecCCeeeehehhheeeeeeccCCceEEEec
Confidence 4468877764 4899999999999999999999999999999998664
No 82
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=92.21 E-value=0.15 Score=43.90 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=29.5
Q ss_pred CCCceEecCCeEEEEEEccee-eeeecCcceEEEEeccc
Q 032928 76 ETGASVKQGGGFGVVESVKAT-SDVNSPISGEVIEVNTK 113 (130)
Q Consensus 76 ~vG~~v~~Gd~l~~IEs~K~~-~~l~SPvsG~Vv~vN~~ 113 (130)
++||.|++|+++++ ..|.. .-+.||+||+|+++|.-
T Consensus 46 ~~gD~VkkGq~LfE--dKknpgv~~Tap~sG~V~aI~RG 82 (447)
T COG1726 46 REGDAVKKGQVLFE--DKKNPGVVFTAPVSGKVTAIHRG 82 (447)
T ss_pred ccCCeeeccceeee--cccCCCeEEeccCCceEEEeecc
Confidence 78999999999974 45543 44889999999999863
No 83
>COG3608 Predicted deacylase [General function prediction only]
Probab=91.24 E-value=0.38 Score=40.67 Aligned_cols=51 Identities=22% Similarity=0.361 Sum_probs=39.5
Q ss_pred hccCCeeEEEcCCCCceEecCCeEEEEEEc---ceeeeeecCcceEEEEecccccc
Q 032928 64 DHLGEVVFVELPETGASVKQGGGFGVVESV---KATSDVNSPISGEVIEVNTKLTE 116 (130)
Q Consensus 64 ~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~---K~~~~l~SPvsG~Vv~vN~~l~~ 116 (130)
...|-|.+ +.+.||+|++||.++.|-.. +...++.+|++|.|...-..-+-
T Consensus 262 p~~G~v~~--~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~~~v 315 (331)
T COG3608 262 PAGGLVEF--LVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSLRLV 315 (331)
T ss_pred CCCceEEE--eecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeecccc
Confidence 44454443 35889999999999999764 78899999999999987654433
No 84
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=89.85 E-value=0.82 Score=38.59 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=33.1
Q ss_pred cCCCCceEecCCeEEEEEE--cceeeee--ecCcceEEEEeccccc
Q 032928 74 LPETGASVKQGGGFGVVES--VKATSDV--NSPISGEVIEVNTKLT 115 (130)
Q Consensus 74 lp~vG~~v~~Gd~l~~IEs--~K~~~~l--~SPvsG~Vv~vN~~l~ 115 (130)
..++|+.|++||.++.|-. ...+.++ .||.+|.|..++....
T Consensus 303 ~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~~~~~ 348 (359)
T cd06250 303 RAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARASRRF 348 (359)
T ss_pred ecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEecCCcc
Confidence 3488999999999999964 2334454 9999999999876554
No 85
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=88.55 E-value=1.9 Score=31.44 Aligned_cols=50 Identities=22% Similarity=0.356 Sum_probs=34.0
Q ss_pred eeCceeE-EEEeCC---EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEE
Q 032928 40 YASSHEW-VKHEGS---VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVES 92 (130)
Q Consensus 40 ys~~H~W-v~~e~~---~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs 92 (130)
|...|-. ++.+++ .+.||+.....+--|=-.++ +.|++|++||+++.+--
T Consensus 50 ~~T~HA~~i~~~~G~eiLiHiGidTv~l~g~gF~~~v---k~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 50 FPTKHAIGIESDSGVEILIHIGIDTVKLNGEGFTSHV---EEGQRVKQGDKLLEFDL 103 (124)
T ss_pred ccCCCEEEEEeCCCcEEEEEeeeeeeecCCCceEEEe---cCCCEEcCCCEEEEEcH
Confidence 4455654 454444 58999987766533333333 89999999999998853
No 86
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=88.33 E-value=1.9 Score=31.35 Aligned_cols=51 Identities=18% Similarity=0.314 Sum_probs=34.7
Q ss_pred eeeCceeE-EEEeCC---EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEE
Q 032928 39 KYASSHEW-VKHEGS---VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVES 92 (130)
Q Consensus 39 ~ys~~H~W-v~~e~~---~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs 92 (130)
.|...|-. ++.+++ .+.|||.....+--|=-. +.+.|++|++||+++++-.
T Consensus 49 v~~T~HA~gi~~~~G~evLiHiGidTV~L~G~gF~~---~v~~Gd~V~~G~~l~~~D~ 103 (121)
T TIGR00830 49 IFPTKHAFGIESDSGVEILIHIGIDTVKLNGEGFTS---HVEEGQRVKKGDPLLEFDL 103 (121)
T ss_pred EccCCCEEEEEeCCCcEEEEEeeeceeecCCCceEE---EecCCCEEcCCCEEEEEcH
Confidence 34556754 444444 589999877665333222 3499999999999999854
No 87
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=87.68 E-value=0.8 Score=38.72 Aligned_cols=43 Identities=14% Similarity=0.102 Sum_probs=34.0
Q ss_pred eCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928 50 EGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 50 e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
++..+.-.......+.-|.|..+.+ ++|+.|++||+|+.|++.
T Consensus 53 ~~a~v~~~~v~v~a~v~G~V~~v~V-~~Gd~VkkGqvL~~LD~~ 95 (390)
T PRK15136 53 DDAYVAGNQVQIMSQVSGSVTKVWA-DNTDFVKEGDVLVTLDPT 95 (390)
T ss_pred CCcEEeeeEEEEeccCCeEEEEEEc-CCCCEECCCCEEEEECcH
Confidence 3334444556666788899999976 899999999999999874
No 88
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=86.88 E-value=1.2 Score=36.58 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=31.4
Q ss_pred EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928 53 VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 53 ~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
.+.--.....-+.-|.|..+.+ ++|+.|++||+|+.|++.
T Consensus 43 ~v~~~~v~v~~~v~G~V~~v~V-~~G~~VkkGq~L~~ld~~ 82 (346)
T PRK10476 43 YIDADVVHVASEVGGRIVELAV-TENQAVKKGDLLFRIDPR 82 (346)
T ss_pred EEEeeeEEEcccCceEEEEEEe-CCCCEEcCCCEEEEECcH
Confidence 3333444555677799998866 999999999999999986
No 89
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=86.62 E-value=1.2 Score=35.99 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=30.6
Q ss_pred EEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928 54 ATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 54 ~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
+.-.......+.-|.|..+.+ ++|+.|++||+|+.|++.
T Consensus 38 v~~~~~~v~a~~~G~V~~i~v-~~G~~V~kGq~L~~ld~~ 76 (334)
T TIGR00998 38 VKANQLQVSSQVSGSVIEVNV-DDTDYVKQGDVLVRLDPT 76 (334)
T ss_pred EEcceEEEcccCceEEEEEEe-CCCCEEcCCCEEEEECch
Confidence 333444455577899998866 899999999999999986
No 90
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=86.61 E-value=0.83 Score=29.13 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=24.6
Q ss_pred cchhccCCeeEEEcCCCCceEecCCeEEEEE
Q 032928 61 HAQDHLGEVVFVELPETGASVKQGGGFGVVE 91 (130)
Q Consensus 61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IE 91 (130)
...+.-|.|..+.. +.|+.|..|++++.||
T Consensus 41 v~s~~~G~v~~~~~-~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 41 IVAEEAGTVKKINV-QEGDFVNEGDVLLEIE 70 (70)
T ss_pred EeCCCCEEEEEEEe-cCCCEECCCCEEEEEC
Confidence 44456788888766 7899999999999987
No 91
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=84.49 E-value=3.6 Score=31.54 Aligned_cols=52 Identities=19% Similarity=0.311 Sum_probs=35.1
Q ss_pred eeCceeE-EEEeCC---EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcc
Q 032928 40 YASSHEW-VKHEGS---VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVK 94 (130)
Q Consensus 40 ys~~H~W-v~~e~~---~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K 94 (130)
|...|-- ++.+++ .+.|||.....+ |+=... +.+.||+|++||+|+.+--..
T Consensus 72 f~T~HAigi~t~~G~eiLIHiGiDTV~L~--G~gF~~-~Vk~Gd~Vk~G~~L~~~D~~~ 127 (169)
T PRK09439 72 FETNHAFSIESDSGVELFVHFGIDTVELK--GEGFKR-IAEEGQRVKVGDPIIEFDLPL 127 (169)
T ss_pred cCCCCEEEEEeCCCcEEEEEEeecccccC--CCceEE-EecCCCEEeCCCEEEEEcHHH
Confidence 4456754 455544 588999776554 543322 349999999999999986543
No 92
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=83.67 E-value=1.3 Score=35.88 Aligned_cols=31 Identities=13% Similarity=0.152 Sum_probs=26.2
Q ss_pred hhcc---CCeeEEEcCCCCceEecCCeEEEEEEcc
Q 032928 63 QDHL---GEVVFVELPETGASVKQGGGFGVVESVK 94 (130)
Q Consensus 63 ~~~l---G~I~~v~lp~vG~~v~~Gd~l~~IEs~K 94 (130)
...- |.|..|.+ ++|+.|++||+|+.|+...
T Consensus 18 ~~~~~~~G~V~~i~V-~eG~~V~~G~~L~~ld~~~ 51 (327)
T TIGR02971 18 APSSGGTDRIKKLLV-AEGDRVQAGQVLAELDSRP 51 (327)
T ss_pred CCCCCCCcEEEEEEc-cCCCEecCCcEEEEecCcH
Confidence 3455 89999876 8999999999999998753
No 93
>PRK06748 hypothetical protein; Validated
Probab=83.65 E-value=2.6 Score=28.78 Aligned_cols=34 Identities=12% Similarity=0.035 Sum_probs=28.0
Q ss_pred ecchhccCCeeEEEcCCCCceEecCCeEEEEEEcc
Q 032928 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVESVK 94 (130)
Q Consensus 60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K 94 (130)
+.-.+.-|.|..+.. ++|+.+..|++++.||.+-
T Consensus 44 ei~Ap~~G~v~~i~v-~~Gd~V~vG~~la~I~~~~ 77 (83)
T PRK06748 44 EIKVGISGYIESLEV-VEGQAIADQKLLITVRDDL 77 (83)
T ss_pred EEecCCCEEEEEEEe-CCCCEECCCCEEEEEECCe
Confidence 556677899988854 8999999999999997554
No 94
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=82.94 E-value=1.6 Score=28.99 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=17.4
Q ss_pred cCCCCceEecCCeEEEEEEcc
Q 032928 74 LPETGASVKQGGGFGVVESVK 94 (130)
Q Consensus 74 lp~vG~~v~~Gd~l~~IEs~K 94 (130)
..++||+|++||++++|=+..
T Consensus 37 ~~k~Gd~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 37 HKKVGDRVEKGDPLATIYAND 57 (75)
T ss_dssp SS-TTSEEBTTSEEEEEEESS
T ss_pred cCcCcCEECCCCeEEEEEcCC
Confidence 468999999999999997654
No 95
>PRK12784 hypothetical protein; Provisional
Probab=82.57 E-value=5.2 Score=27.40 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=29.3
Q ss_pred EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcce
Q 032928 53 VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKA 95 (130)
Q Consensus 53 ~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~ 95 (130)
.+.+|++ |.|..+++ ++|++|..+..++.+|.+-.
T Consensus 45 ~v~vGiS-------G~I~~v~V-e~Gq~i~~dtlL~~~edDll 79 (84)
T PRK12784 45 KVAVGIS-------GNIRLVNV-VVGQQIHTDTLLVRLEDDLL 79 (84)
T ss_pred EEEEeee-------eeEEEEEe-ecCceecCCcEEEEEeeceE
Confidence 6888886 66777777 89999999999999997654
No 96
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=80.30 E-value=5.4 Score=30.38 Aligned_cols=67 Identities=19% Similarity=0.238 Sum_probs=43.2
Q ss_pred eeeCcee-EEEEeCC---EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEE
Q 032928 39 KYASSHE-WVKHEGS---VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVI 108 (130)
Q Consensus 39 ~ys~~H~-Wv~~e~~---~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv 108 (130)
.|...|- =++.+++ .+.|||+...++ |+-... +.+.|++|++||+++.+--+.--..=+|.++-.|+
T Consensus 56 iFpTkHAigi~t~~GvEiLiHiGiDTV~L~--GegF~~-~v~~Gd~Vk~Gd~Li~fDl~~Ik~~~~s~itpvVv 126 (156)
T COG2190 56 IFPTKHAIGIETDEGVEILIHIGIDTVKLN--GEGFES-LVKEGDKVKAGDPLLEFDLDLIKAKGYSTITPVVV 126 (156)
T ss_pred EeeCCcEEEEEcCCCcEEEEEeceeeEEEC--CcceEE-EeeCCCEEccCCEEEEECHHHHhhcCCCceeeEEE
Confidence 4556664 3344444 589999887665 774433 45999999999999998654433333444444444
No 97
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=79.11 E-value=3.3 Score=33.72 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=30.4
Q ss_pred EEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928 56 VGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 56 vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
....+...+.-|.|..+.+ +.|+.|++||+++.|++.
T Consensus 41 ~~~i~v~a~~~G~V~~i~v-~~Gd~V~kG~~L~~ld~~ 77 (331)
T PRK03598 41 IRTVNLGFRVGGRLASLAV-DEGDAVKAGQVLGELDAA 77 (331)
T ss_pred eEEEEeecccCcEEEEEEc-CCCCEEcCCCEEEEEChH
Confidence 3444566778899988875 999999999999999876
No 98
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=78.72 E-value=2.6 Score=34.48 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=27.8
Q ss_pred ecchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
....+.-|.|..+.+ ++|+.|++||+|+.+++.
T Consensus 49 ~i~~~v~G~V~~v~V-~~Gd~VkkGqvLa~Ld~~ 81 (310)
T PRK10559 49 AIAPDVSGLITQVNV-HDNQLVKKGQVLFTIDQP 81 (310)
T ss_pred EEccCCceEEEEEEe-CCcCEEcCCCEEEEECcH
Confidence 345567799998877 789999999999999983
No 99
>PRK07051 hypothetical protein; Validated
Probab=78.60 E-value=3.5 Score=27.16 Aligned_cols=31 Identities=26% Similarity=0.374 Sum_probs=25.6
Q ss_pred ecchhccCCeeEEEcCCCCceEecCCeEEEEE
Q 032928 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVE 91 (130)
Q Consensus 60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IE 91 (130)
+...+.-|.|..+.. +.|+.|+.||+++.|+
T Consensus 49 ~i~a~~~G~v~~i~~-~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 49 EVEAEAAGRVVEFLV-EDGEPVEAGQVLARIE 79 (80)
T ss_pred EEeCCCCEEEEEEEc-CCcCEECCCCEEEEEe
Confidence 445677888888865 8899999999999985
No 100
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=77.60 E-value=7.6 Score=30.86 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=37.4
Q ss_pred cCCeeEEEcCCCCceEecCCeE--EEEEE--cceeeeeecCcceEEEEecccccc
Q 032928 66 LGEVVFVELPETGASVKQGGGF--GVVES--VKATSDVNSPISGEVIEVNTKLTE 116 (130)
Q Consensus 66 lG~I~~v~lp~vG~~v~~Gd~l--~~IEs--~K~~~~l~SPvsG~Vv~vN~~l~~ 116 (130)
.+-+..- ..+.|+.|++||.+ +.+-. .....++.+|.+|.|+.+|....-
T Consensus 227 ~~G~~~~-~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii~~~~~~~v 280 (292)
T PF04952_consen 227 AGGLFEP-EVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIIIFIRESPYV 280 (292)
T ss_dssp SSEEEEE-TSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEESECTSSEC
T ss_pred ccEEEEE-eecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEEEeCccccc
Confidence 3334433 34889999999999 77643 235678999999999999987653
No 101
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=76.34 E-value=1.7 Score=34.16 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=19.5
Q ss_pred ccCCeeEEEcCCCCceEecCCeEEEEEEcce
Q 032928 65 HLGEVVFVELPETGASVKQGGGFGVVESVKA 95 (130)
Q Consensus 65 ~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~ 95 (130)
.-|.|..|.+ ++|+.|++||+|+.|.....
T Consensus 8 ~~G~V~~i~V-~eG~~VkkGq~L~~LD~~~~ 37 (305)
T PF00529_consen 8 VGGIVTEILV-KEGQRVKKGQVLARLDPTDY 37 (305)
T ss_dssp S-EEEEEE-S--TTEEE-TTSECEEE--HHH
T ss_pred CCeEEEEEEc-cCcCEEeCCCEEEEEEeecc
Confidence 3466777755 99999999999999986543
No 102
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=75.95 E-value=6 Score=33.32 Aligned_cols=33 Identities=9% Similarity=0.234 Sum_probs=27.5
Q ss_pred ecchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
+...+.-|.|..+.+ ++|+.|++||.|+.|+..
T Consensus 67 ~l~a~vsG~V~~v~v-~~Gd~VkkGqvLa~ld~~ 99 (397)
T PRK15030 67 EVRPQVSGIILKRNF-KEGSDIEAGVSLYQIDPA 99 (397)
T ss_pred EEEecCcEEEEEEEc-CCCCEecCCCEEEEECCH
Confidence 444567799998866 899999999999999864
No 103
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=75.42 E-value=8.1 Score=28.38 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=32.2
Q ss_pred eeCceeE-EEEeCC---EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEccee
Q 032928 40 YASSHEW-VKHEGS---VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKAT 96 (130)
Q Consensus 40 ys~~H~W-v~~e~~---~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~ 96 (130)
|...|-. ++.+++ .+.||+.....+ |+-... +.+.|++|++||+|+.+-..+-.
T Consensus 54 ~~T~HAi~i~s~~G~eiLiHiGidTv~L~--G~gF~~-~v~~G~~V~~G~~L~~~D~~~i~ 111 (132)
T PF00358_consen 54 FPTKHAIGIRSDNGVEILIHIGIDTVKLN--GEGFET-LVKEGDKVKAGQPLIEFDLEKIK 111 (132)
T ss_dssp -TTSSEEEEEETTSEEEEEE-SBSGGGGT--TTTEEE-SS-TTSEE-TTEEEEEE-HHHHH
T ss_pred cCCCCEEEEEeCCCCEEEEEEccchhhcC--CcceEE-EEeCCCEEECCCEEEEEcHHHHH
Confidence 4444533 344444 578999877654 554443 45899999999999998655433
No 104
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=74.63 E-value=4.7 Score=31.96 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=20.7
Q ss_pred ecchhccCCeeEEEcCCCCceEecCCeEEEEEEcc
Q 032928 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVESVK 94 (130)
Q Consensus 60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K 94 (130)
.+..+.-|.| .+.+ ++|++|++||+|+.+++..
T Consensus 23 ~v~~~~~G~v-~~~v-~~G~~V~kG~~L~~ld~~~ 55 (328)
T PF12700_consen 23 SVSAPVSGRV-SVNV-KEGDKVKKGQVLAELDSSD 55 (328)
T ss_dssp EE--SS-EEE-EE-S--TTSEEETT-EEEEEE-HH
T ss_pred EEECCCCEEE-EEEe-CCcCEECCCCEEEEEEChh
Confidence 3444556778 6655 8999999999999998754
No 105
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=72.13 E-value=4.4 Score=33.40 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=28.4
Q ss_pred chhccCCeeEEEcCCCCceEecCCeEEEEEEccee
Q 032928 62 AQDHLGEVVFVELPETGASVKQGGGFGVVESVKAT 96 (130)
Q Consensus 62 a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~ 96 (130)
.....|.|..+.+ ++|+.|++||+++.+++....
T Consensus 47 ~~~~~G~v~~i~V-~eG~~V~kG~~L~~ld~~~~~ 80 (423)
T TIGR01843 47 QHLEGGIVREILV-REGDRVKAGQVLVELDATDVE 80 (423)
T ss_pred ccCCCcEEEEEEe-CCCCEecCCCeEEEEccchhh
Confidence 3556799988866 999999999999999887654
No 106
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=71.50 E-value=4.3 Score=34.38 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=29.9
Q ss_pred EeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcce
Q 032928 57 GITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKA 95 (130)
Q Consensus 57 GiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~ 95 (130)
++.......-|.|..+.+ ++|+.|++||+++.|+....
T Consensus 57 ~~~~v~a~~~G~V~~i~V-~eG~~V~kGq~L~~l~~~~~ 94 (421)
T TIGR03794 57 GVDTIQSPGSGVVIDLDV-EVGDQVKKGQVVARLFQPEL 94 (421)
T ss_pred ceeEEECCCCeEEEEEEC-CCcCEECCCCEEEEECcHHH
Confidence 344455667788998855 89999999999999987654
No 107
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=69.53 E-value=5.5 Score=29.27 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=25.7
Q ss_pred ecchhccCCeeEEEcCCCCceEecCCeEEEEE
Q 032928 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVE 91 (130)
Q Consensus 60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IE 91 (130)
+...+.-|.|..|.+ +.|+.|+.||+|+.||
T Consensus 109 eI~A~~~G~V~~Ilv-~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 109 EIEAPADGVVKEILV-KNGDPVEYGDPLAVIE 139 (140)
T ss_pred eecCCCCcEEEEEEe-cCCCccCCCCEEEEec
Confidence 444566799998855 9999999999999987
No 108
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=69.34 E-value=11 Score=34.11 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=36.1
Q ss_pred eeeCceeE-EEEeCC---EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcc
Q 032928 39 KYASSHEW-VKHEGS---VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVK 94 (130)
Q Consensus 39 ~ys~~H~W-v~~e~~---~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K 94 (130)
.|...|-. ++.+++ .+.||++....+ |+=... +.++||+|++||+++++.-++
T Consensus 513 ~~~t~Ha~gi~~~~G~eiliHiGidTv~l~--g~gF~~-~v~~g~~V~~G~~l~~~d~~~ 569 (610)
T TIGR01995 513 VFPTKHAIGIRSDNGIEILIHVGIDTVELN--GEGFEI-LVKVGDHVKAGQLLLTFDLDK 569 (610)
T ss_pred EcCCCCEEEEEECCCcEEEEEeccchhccC--CCCeEE-EecCcCEEcCCCEEEEecHHH
Confidence 35566765 444544 589999776555 443333 339999999999999986544
No 109
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=69.24 E-value=22 Score=27.27 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=40.1
Q ss_pred eeEEEEeCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCc
Q 032928 44 HEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPI 103 (130)
Q Consensus 44 H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPv 103 (130)
-.++..+.+...+.+...+....|.|..---+++|+.+++||.++.++- -....+.-|-
T Consensus 122 R~~~~i~~~~G~v~~v~Vga~~v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~ 180 (202)
T PF02666_consen 122 RVVLVIETKFGKVAVVQVGALLVGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPK 180 (202)
T ss_pred EEEEEEEECCCEEEEEEeccceeceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeC
Confidence 3444444333467777788888888886433468999999999999997 3334444443
No 110
>PRK02259 aspartoacylase; Provisional
Probab=68.12 E-value=6.9 Score=31.88 Aligned_cols=62 Identities=16% Similarity=0.102 Sum_probs=46.0
Q ss_pred EeeecchhccCCeeEEEcCCC--C--ceEecCCeEEEEEEcceeeeeecCcceEEEEeccccccCcc
Q 032928 57 GITDHAQDHLGEVVFVELPET--G--ASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTETPG 119 (130)
Q Consensus 57 GiTd~a~~~lG~I~~v~lp~v--G--~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~~P~ 119 (130)
+..++-...-|++.-+=.|.+ + +.|++||+++.. .+.....+.+|-+|..+-+|++..-+..
T Consensus 212 ~~~~~pr~~~g~~~g~vhp~v~~~d~~~v~~G~~lf~~-~~g~~~~~~~~~~~~pvfine~ay~~kg 277 (288)
T PRK02259 212 GSIDYPRDENGQIAAMIHPQLQGRDWQPLKPGDPLFLT-FDGKTIFYEGDSTVYPVFINEAAYYEKG 277 (288)
T ss_pred cccCCCCCCCCCEeEEechhhcCCCccccCCCCcceec-CCCCEEEecCCCCEEeEEecHHHHHhhh
Confidence 335665566676654434444 6 669999999988 7778889999999999999998765543
No 111
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=67.57 E-value=18 Score=27.68 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=30.5
Q ss_pred EEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcc
Q 032928 56 VGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPIS 104 (130)
Q Consensus 56 vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvs 104 (130)
+++...+....+.|. ..+++|+.+++||.++-++-+ ...++..|-+
T Consensus 119 v~~v~v~~~~~~~i~--~~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~ 164 (189)
T TIGR00164 119 VGVVQIAGFVARRIV--CYVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN 164 (189)
T ss_pred EEEEEECeEEccEEE--EecCCCCEEecCcEEEEEecC-CeEEEEEcCC
Confidence 444444433344443 235789999999999999988 4455667754
No 112
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=67.02 E-value=12 Score=34.17 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=35.9
Q ss_pred eeeCceeE-EEEeCC---EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcc
Q 032928 39 KYASSHEW-VKHEGS---VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVK 94 (130)
Q Consensus 39 ~ys~~H~W-v~~e~~---~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K 94 (130)
.|...|-. ++-+++ .+.|||+....+ |+=... +.++||+|++||+++++.-+.
T Consensus 529 vf~T~HAigi~t~~G~eiLiHiGiDTV~L~--G~gF~~-~v~~Gd~V~~G~~l~~~D~~~ 585 (627)
T PRK09824 529 LFATLHAIGLESDDGVEVLIHVGIDTVKLD--GKFFTA-HVNVGDKVNTGDLLIEFDIPA 585 (627)
T ss_pred EcCCCcEEEEEeCCCcEEEEEechhhhhcC--CCCceE-EecCCCEEcCCCEEEEEcHHH
Confidence 35556765 444444 589999776554 553332 338999999999999986543
No 113
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=64.73 E-value=9.2 Score=24.38 Aligned_cols=29 Identities=21% Similarity=0.341 Sum_probs=23.5
Q ss_pred chhccCCeeEEEcCCCCceEecCCeEEEEE
Q 032928 62 AQDHLGEVVFVELPETGASVKQGGGFGVVE 91 (130)
Q Consensus 62 a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IE 91 (130)
..+.-|.|..+.. +.|+.++.|++++.|+
T Consensus 43 ~a~~~G~V~~i~v-~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 43 LAEVAGTVSKVSV-SVGDVIQAGDLIAVIS 71 (71)
T ss_pred eCCCCEEEEEEEe-CCCCEECCCCEEEEEC
Confidence 3466788887765 8899999999999874
No 114
>PRK12784 hypothetical protein; Provisional
Probab=63.61 E-value=24 Score=24.17 Aligned_cols=53 Identities=17% Similarity=0.124 Sum_probs=44.5
Q ss_pred hhccCCeeEEEcCCCCceEecCCeEEEEEEc-ceeeeeecCcceEEEEecccccc
Q 032928 63 QDHLGEVVFVELPETGASVKQGGGFGVVESV-KATSDVNSPISGEVIEVNTKLTE 116 (130)
Q Consensus 63 ~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~-K~~~~l~SPvsG~Vv~vN~~l~~ 116 (130)
.+-.|.|..+-+ ..+..|-.=++++.||.. +....+.--+||.|..+|.++.+
T Consensus 10 S~~~G~Vekifi-~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq 63 (84)
T PRK12784 10 SSYEGKVEEIFV-NESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQ 63 (84)
T ss_pred CccccEEEEEEE-cCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCc
Confidence 345678877755 788999999999999984 56888999999999999988875
No 115
>PF13437 HlyD_3: HlyD family secretion protein
Probab=62.87 E-value=12 Score=25.02 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=15.2
Q ss_pred cCCeeEEEcCCCCceEecCCeEEEEEE
Q 032928 66 LGEVVFVELPETGASVKQGGGFGVVES 92 (130)
Q Consensus 66 lG~I~~v~lp~vG~~v~~Gd~l~~IEs 92 (130)
-|-|..+.. ..|+.+.+|++++.|..
T Consensus 7 ~G~V~~~~~-~~G~~v~~g~~l~~i~~ 32 (105)
T PF13437_consen 7 DGVVVSINV-QPGEVVSAGQPLAEIVD 32 (105)
T ss_pred CEEEEEEeC-CCCCEECCCCEEEEEEc
Confidence 345555544 66666666666666654
No 116
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=62.62 E-value=12 Score=32.13 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=34.1
Q ss_pred eeCceeEEEEeCCEEEEEeeecchhcc-CCeeEEEcCCCCceEecCCeEEEEEEcce
Q 032928 40 YASSHEWVKHEGSVATVGITDHAQDHL-GEVVFVELPETGASVKQGGGFGVVESVKA 95 (130)
Q Consensus 40 ys~~H~Wv~~e~~~~~vGiTd~a~~~l-G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~ 95 (130)
|.+-..++.-.|.+.--|-....|... |.|..|.+ ++|+.|++||+++.+.....
T Consensus 40 ~~~~~~~v~a~G~v~p~~~~~~vq~~~~G~v~~i~V-~eG~~V~~G~~L~~ld~~~~ 95 (457)
T TIGR01000 40 FAKKEIVIRTTGTIEPAKILSKIQSTSNNAIKENYL-KENKFVKKGDLLVVYDNGNE 95 (457)
T ss_pred hEeeeEEEEEeEEEEecCceEEEEcCCCcEEEEEEc-CCCCEecCCCEEEEECchHH
Confidence 344455555444433344333445544 55555644 99999999999999976543
No 117
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=62.16 E-value=23 Score=28.64 Aligned_cols=56 Identities=5% Similarity=0.014 Sum_probs=39.9
Q ss_pred eEEEEeCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcc
Q 032928 45 EWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPIS 104 (130)
Q Consensus 45 ~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvs 104 (130)
..+..+.+...+.+...+.-..|.|... ..|+.+++||.++-++-+ ....+.-|-+
T Consensus 180 ~v~~i~~~~G~v~~v~Vga~~Vg~I~~~---~~g~~v~kGee~G~F~fG-Stvvllf~~~ 235 (259)
T PRK03140 180 SVTEVNSDGEHMALVKVGAMFVNSIELT---HERDTVQKGEEMAYFSFG-STVVLLFEKD 235 (259)
T ss_pred EEEEEEeCCceEEEEEEeeEEeeEEEEe---cCCCEEecCcEeeeeccC-CeEEEEEeCC
Confidence 4444443344577777777788888854 579999999999999988 5555665543
No 118
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=59.50 E-value=11 Score=28.97 Aligned_cols=45 Identities=18% Similarity=0.322 Sum_probs=28.8
Q ss_pred chhccCCeeEEEcCCCCceEec----CCeEEEEEEcceeeeeecCcceEEEEec
Q 032928 62 AQDHLGEVVFVELPETGASVKQ----GGGFGVVESVKATSDVNSPISGEVIEVN 111 (130)
Q Consensus 62 a~~~lG~I~~v~lp~vG~~v~~----Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN 111 (130)
..+.-|++.. |-++.|.+-+ ||=++..=++ ..++||++|+|..+-
T Consensus 24 ~aP~~G~vi~--L~~V~D~vFs~k~mGdGvAI~P~~---~~v~AP~dG~V~~vf 72 (169)
T PRK09439 24 IAPLSGEIVN--IEDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIF 72 (169)
T ss_pred EecCCeEEEE--hHHCCChHhcccCccceEEEEccC---CEEEecCCeEEEEEc
Confidence 3455666653 4445555544 5555555433 679999999999875
No 119
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=59.24 E-value=17 Score=30.96 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=36.0
Q ss_pred eCceeEEEEeCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEE
Q 032928 41 ASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVES 92 (130)
Q Consensus 41 s~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs 92 (130)
-.+|.|- ++-.+.-=++..+-+--|-|..|.+ +.++.|++||+|+.|.-
T Consensus 38 ~~~~~~T--ddAyv~~~vv~Iap~VsG~V~eV~V-~dnq~Vk~Gd~L~~iD~ 86 (352)
T COG1566 38 YRNHPST--DDAYVRADVVPIAPQVSGRVTEVNV-KDNQLVKKGDVLFRIDP 86 (352)
T ss_pred hccCccc--CceEEEEEEEEEcCcCceEEEEEEe-cCCCEecCCCeEEEECc
Confidence 3445553 2335555566667788899999977 78899999999999964
No 120
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=59.18 E-value=45 Score=33.29 Aligned_cols=66 Identities=23% Similarity=0.237 Sum_probs=46.0
Q ss_pred eEEEEeCCEEEEEeeecc--hh---ccCCeeEEEcCCCCceEecCCeEEEEEEc-------ceeeeeecCcceEEEEecc
Q 032928 45 EWVKHEGSVATVGITDHA--QD---HLGEVVFVELPETGASVKQGGGFGVVESV-------KATSDVNSPISGEVIEVNT 112 (130)
Q Consensus 45 ~Wv~~e~~~~~vGiTd~a--~~---~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~-------K~~~~l~SPvsG~Vv~vN~ 112 (130)
-|+-..++.++|.=.+.+ +. -.|.+.+| +.|+.|+++|.++.+-+. |..-.|+||.+|+|.--+.
T Consensus 375 a~~~~~~~~~~i~~~~~~~~~~~~ip~~s~l~v---~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI~fst~ 451 (1331)
T PRK02597 375 ALQAEVDFDLVLKPSGKGKPQKIEITQGSLLFV---DDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEVRFADL 451 (1331)
T ss_pred EEEEeeccEEEEEeCCCCceEEEEeCCCCEEEE---ECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEEEECCC
Confidence 677666666666533321 11 13556665 889999999999999774 3456899999999987664
Q ss_pred c
Q 032928 113 K 113 (130)
Q Consensus 113 ~ 113 (130)
-
T Consensus 452 V 452 (1331)
T PRK02597 452 I 452 (1331)
T ss_pred c
Confidence 3
No 121
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=59.16 E-value=14 Score=23.75 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=23.6
Q ss_pred ecchhccCCeeEEEcCCCCceEecCCeEEEE
Q 032928 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVV 90 (130)
Q Consensus 60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~I 90 (130)
+.-.+.-|.|..+ +.++|+.|+.|++++.|
T Consensus 45 ~v~a~~~G~i~~i-~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 45 EVEAPVSGIIKEI-LVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEBSSSEEEEEE-SSTTTEEEETTSEEEEE
T ss_pred EEECCCCEEEEEE-EECCCCEECCCCEEEEC
Confidence 4455667888777 44789999999999976
No 122
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=57.23 E-value=23 Score=30.55 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=28.7
Q ss_pred cCCCCceEecCCeEEEEE-EcceeeeeecCc--ceEEEEe
Q 032928 74 LPETGASVKQGGGFGVVE-SVKATSDVNSPI--SGEVIEV 110 (130)
Q Consensus 74 lp~vG~~v~~Gd~l~~IE-s~K~~~~l~SPv--sG~Vv~v 110 (130)
..++|+.|..||.+++|. ..--.+.|..|- .|+|..+
T Consensus 54 ~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~ 93 (369)
T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI 93 (369)
T ss_pred ccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEE
Confidence 358899999999999994 333567777775 7998887
No 123
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=55.57 E-value=56 Score=25.32 Aligned_cols=47 Identities=23% Similarity=0.393 Sum_probs=33.0
Q ss_pred EEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcc
Q 032928 55 TVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPIS 104 (130)
Q Consensus 55 ~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvs 104 (130)
.+.+...+....+.|.. ..++|+.+++||.++-++-+ ...+++-|-+
T Consensus 138 ~~~~~~i~~~~~r~I~~--~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~ 184 (206)
T PRK05305 138 EIGVVQIAGLIARRIVC--YVKEGDEVERGERFGLIRFG-SRVDVYLPLG 184 (206)
T ss_pred EEEEEEeCeEEccEEEE--eCCCCCEEccCcEEeEEecC-CeEEEEEcCC
Confidence 34455555555566653 34789999999999999988 4566777765
No 124
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=54.35 E-value=30 Score=31.85 Aligned_cols=52 Identities=23% Similarity=0.302 Sum_probs=34.1
Q ss_pred eeCceeE-EEEeCC---EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcc
Q 032928 40 YASSHEW-VKHEGS---VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVK 94 (130)
Q Consensus 40 ys~~H~W-v~~e~~---~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K 94 (130)
|...|-- ++.+++ .+.||++....+--|--.+ .++||+|++||+++++.-.+
T Consensus 550 ~~T~HA~gi~t~~G~eiLIHiGidTV~l~G~gF~~~---Vk~Gd~V~~G~~l~~~D~~~ 605 (648)
T PRK10255 550 FNTNHAFCLETEKGAEIVVHMGIDTVALEGKGFKRL---VEEGAQVSAGQPILEMDLDY 605 (648)
T ss_pred cCCCcEEEEEcCCCCEEEEEeccchhccCCCCceEE---ecCCCEEcCCCEEEEEcHHH
Confidence 4556744 344444 5788987665553332333 39999999999999986544
No 125
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=53.98 E-value=29 Score=23.13 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=26.0
Q ss_pred EEEEeCCEEEEEeeecchhccC--CeeEEEcCCCCceEecCCeEEEEEEc
Q 032928 46 WVKHEGSVATVGITDHAQDHLG--EVVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 46 Wv~~e~~~~~vGiTd~a~~~lG--~I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
++..+++ +.-|+ +++...+. .+..--..+.|+.+++|+.++.+++.
T Consensus 22 i~are~g-V~aG~-~~~~~i~~~l~~~v~~~~~dG~~v~~g~~i~~i~G~ 69 (88)
T PF02749_consen 22 IIAREDG-VLAGL-EEAEEIFEKLGLEVEWLVKDGDRVEPGDVILEIEGP 69 (88)
T ss_dssp EEESSSE-EE-SH-HHHHHHHHHCTEEEEESS-TT-EEETTCEEEEEEEE
T ss_pred EEeCCCE-EEECH-HHHHHHHhhccEEEEEEeCCCCCccCCcEEEEEEeC
Confidence 3333443 44575 44444332 33322345889999999999999874
No 126
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=53.17 E-value=15 Score=28.70 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=25.2
Q ss_pred chhccCCeeEEEcCCCCceEecCCeEEEEEE
Q 032928 62 AQDHLGEVVFVELPETGASVKQGGGFGVVES 92 (130)
Q Consensus 62 a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs 92 (130)
.....|.|..+.+ ++|+.|++||.++.+++
T Consensus 70 ~~~~~G~v~~i~v-~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 70 LARVAGIVAEILV-KEGDRVKKGQLLARLDP 99 (372)
T ss_pred ecccccEEEEEEc-cCCCeecCCCEEEEECC
Confidence 3346788888866 99999999999999987
No 127
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=51.57 E-value=33 Score=29.15 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=43.9
Q ss_pred eeCceeEEEE--eCCEEEEEeeecc--------------hhccCCeeEEEc------CCCCceEecCCeEEEEEEcceee
Q 032928 40 YASSHEWVKH--EGSVATVGITDHA--------------QDHLGEVVFVEL------PETGASVKQGGGFGVVESVKATS 97 (130)
Q Consensus 40 ys~~H~Wv~~--e~~~~~vGiTd~a--------------~~~lG~I~~v~l------p~vG~~v~~Gd~l~~IEs~K~~~ 97 (130)
..++-.||.. +|..+.|=+.+-- ...-|-|..+.. .++||.|++||.|.+=.-...-.
T Consensus 155 ~~~~i~WV~i~~~GT~l~I~v~E~~~p~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLISG~i~~~~~ 234 (385)
T PF06898_consen 155 QFPDISWVGIEIKGTRLIIEVVEKVDPEEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLISGVIEIEGD 234 (385)
T ss_pred hCCCeEEEEEEEEeeEEEEEEEEcCCCCcccCCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEeeeEcCCCC
Confidence 3466799975 4666666554432 223466777664 58899999999986533222222
Q ss_pred eeecCcceEEEEe
Q 032928 98 DVNSPISGEVIEV 110 (130)
Q Consensus 98 ~l~SPvsG~Vv~v 110 (130)
+-.-+..|.|.+-
T Consensus 235 ~~~v~A~G~V~a~ 247 (385)
T PF06898_consen 235 EQEVHADGDVKAR 247 (385)
T ss_pred ceEECCcEEEEEE
Confidence 3336677887754
No 128
>PRK09907 toxin MazF; Provisional
Probab=49.75 E-value=21 Score=25.13 Aligned_cols=30 Identities=17% Similarity=0.416 Sum_probs=26.0
Q ss_pred hccCCeeEEEc-CCCCceEecCCeEEEEEEc
Q 032928 64 DHLGEVVFVEL-PETGASVKQGGGFGVVESV 93 (130)
Q Consensus 64 ~~lG~I~~v~l-p~vG~~v~~Gd~l~~IEs~ 93 (130)
..-|+|+.++| |..|.+..+-.|+..|-.+
T Consensus 7 ~~rGdI~~vdl~P~~G~E~~g~RP~lVvs~d 37 (111)
T PRK09907 7 PDMGDLIWVDFDPTKGSEQAGHRPAVVLSPF 37 (111)
T ss_pred CCCCcEEEEECCCCCCcccCCCCeEEEEcch
Confidence 45699999999 8999999999999999653
No 129
>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]
Probab=48.53 E-value=32 Score=27.66 Aligned_cols=77 Identities=17% Similarity=0.171 Sum_probs=53.2
Q ss_pred eeeCce-eEEEEeCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccccC
Q 032928 39 KYASSH-EWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET 117 (130)
Q Consensus 39 ~ys~~H-~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~~ 117 (130)
.++.|. .++..+.+...+++...|.-..|.|+.. . +.|+++++||.++-++-++..+.+.-...=..+.+++.+...
T Consensus 153 ~~~~NER~~~~i~t~~g~v~~v~Vga~~v~~Iv~~-~-~~~~~v~~G~~~G~~~fGs~gstvip~~~~~~v~~~~~v~~g 230 (239)
T COG0688 153 AFTENERNSVLIETEQGKVVVVQVAGLVARRIVCY-V-KEGDTVKKGERIGGIRFGSRGSTVLPLFAEPRVAVGERVVAG 230 (239)
T ss_pred hhcccceEEEEEEcCCCcEEEEEEhhheeeEEEEE-e-cCCcEEEhhhhhhhhhhCCcccEEEecCCCceeeeccccccC
Confidence 455553 6666665545888888888899998753 3 559999999999999988555544433333347777766543
No 130
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=48.27 E-value=18 Score=23.96 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=14.7
Q ss_pred CCCCceEecCCeEEEEEEc
Q 032928 75 PETGASVKQGGGFGVVESV 93 (130)
Q Consensus 75 p~vG~~v~~Gd~l~~IEs~ 93 (130)
.++|+.|++||.|+.+-..
T Consensus 57 v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 57 VKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp S-TTSEE-TTCEEEEEBSC
T ss_pred ceecccccCCCEEEecCCC
Confidence 4799999999999999743
No 131
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=48.25 E-value=18 Score=30.05 Aligned_cols=49 Identities=22% Similarity=0.341 Sum_probs=33.4
Q ss_pred eeEEEEeCCEEEEEee--ecchhccCC-eeEEEcCCCCceEecCCeEEEEEEc
Q 032928 44 HEWVKHEGSVATVGIT--DHAQDHLGE-VVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 44 H~Wv~~e~~~~~vGiT--d~a~~~lG~-I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
-.|+..+++++. |+. ....+.+|. +......+.|+++++||.++++|+.
T Consensus 37 a~i~ake~Gvva-G~~~a~~~f~~l~~~i~~~~~~~DG~~v~~g~~i~~~~G~ 88 (280)
T COG0157 37 AVIIAKEAGVVA-GLDVAEEVFELLGPSIEIQWLVKDGDRVKPGDVLAEIEGP 88 (280)
T ss_pred EEEEEcCCcEEE-cHHHHHHHHHHhCCceEEEEEcCCCCEeCCCCEEEEEecc
Confidence 356777777554 653 333355663 4444456899999999999999974
No 132
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=48.08 E-value=48 Score=28.86 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=26.0
Q ss_pred cchhccCCeeEEEcCCCCceEecCCeEEEEEEcc
Q 032928 61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESVK 94 (130)
Q Consensus 61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K 94 (130)
.-.+.-|.|..+.. ++|+.+..|++|+.||...
T Consensus 90 i~Ap~~G~v~~i~v-~~G~~V~~G~~L~~I~~~~ 122 (418)
T PTZ00144 90 IRAPASGVITKIFA-EEGDTVEVGAPLSEIDTGG 122 (418)
T ss_pred EecCCCeEEEEEEe-CCCCEecCCCEEEEEcCCC
Confidence 34456788887755 8999999999999997543
No 133
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=47.51 E-value=30 Score=30.57 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=33.6
Q ss_pred eEEEEeCCEEEEE-----------eeecchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928 45 EWVKHEGSVATVG-----------ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 45 ~Wv~~e~~~~~vG-----------iTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
.|...+|+.+..| ..+.-.+.-|.|..+-. ++|+.|..|++|+.||..
T Consensus 110 ~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv-~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 110 TFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLV-KEGDTVEPGTKVAIISKS 168 (463)
T ss_pred EEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEe-CCCCEecCCCEEEEeccC
Confidence 4766666544333 22334456788888855 899999999999999753
No 134
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=47.13 E-value=44 Score=28.48 Aligned_cols=69 Identities=17% Similarity=0.183 Sum_probs=44.0
Q ss_pred CceeEEEE--eCCEEEEEeeec---------------chhccCCeeEEEc------CCCCceEecCCeEEEEEEcceeee
Q 032928 42 SSHEWVKH--EGSVATVGITDH---------------AQDHLGEVVFVEL------PETGASVKQGGGFGVVESVKATSD 98 (130)
Q Consensus 42 ~~H~Wv~~--e~~~~~vGiTd~---------------a~~~lG~I~~v~l------p~vG~~v~~Gd~l~~IEs~K~~~~ 98 (130)
++-.||.. +|..+.|=+.+- -.+.-|.|..+.. .++||.|++||.|.+=+-.+.-..
T Consensus 153 ~~i~WV~v~i~GTrl~i~v~Ek~~~p~~~~~~~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIsG~i~~~~~~ 232 (382)
T TIGR02876 153 PEIMWAGVRVRGTTLVIKVVEKQEPKPVLKKAEPRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLISGILGKEGKT 232 (382)
T ss_pred CCcEEEEEEEEeEEEEEEEEecCCCCCccccCCCccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEEEeEeCCCCce
Confidence 56789865 466665555543 2223466776664 588999999999886544343343
Q ss_pred eecCcceEEEEe
Q 032928 99 VNSPISGEVIEV 110 (130)
Q Consensus 99 l~SPvsG~Vv~v 110 (130)
-+-+.+|+|.+-
T Consensus 233 ~~v~A~g~V~a~ 244 (382)
T TIGR02876 233 YTVHAEGEVFAR 244 (382)
T ss_pred EEEccceEEEEE
Confidence 456677777653
No 135
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=46.46 E-value=20 Score=23.98 Aligned_cols=31 Identities=23% Similarity=0.498 Sum_probs=25.7
Q ss_pred eeEEEEeCCEEEEEeeecchhccCCeeEEEcC
Q 032928 44 HEWVKHEGSVATVGITDHAQDHLGEVVFVELP 75 (130)
Q Consensus 44 H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp 75 (130)
+.|++. ||.+.|.+++|..+.-|+|++.-.+
T Consensus 36 ~iwI~~-GD~VlV~~~~~~~~~kg~Iv~r~~~ 66 (78)
T cd04456 36 NIWIKR-GDFLIVDPIEEGEDVKADIIFVYCK 66 (78)
T ss_pred CEEEcC-CCEEEEEecccCCCceEEEEEEeCH
Confidence 389865 7899999999988888999988654
No 136
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=46.03 E-value=26 Score=26.15 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=25.0
Q ss_pred eecchhccCCeeEEEcCCCCceEecCCeEEEEE
Q 032928 59 TDHAQDHLGEVVFVELPETGASVKQGGGFGVVE 91 (130)
Q Consensus 59 Td~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IE 91 (130)
.+.....-|.|..+. .+.|+.|..||+|+.||
T Consensus 125 ~eI~A~~~G~v~~i~-v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 125 NEIEAEVAGKVVEIL-VENGQPVEYGQPLIVIE 156 (156)
T ss_pred eEEecCCCcEEEEEE-eCCCCEECCCCEEEEEC
Confidence 344455678888875 48899999999999885
No 137
>PF02452 PemK: PemK-like protein; InterPro: IPR003477 PemK is a growth inhibitor in Escherichia coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. It is responsible for mediating cell death through inhibiting protein synthesis through the cleavage of single-stranded RNA. PemK is part of the PemK-PemI system, where PemI is an antitoxin that inhibits the action of the PemK toxin []. PemK homologues have been found in a wide range of bacteria, which together form an endonuclease family that interfere with mRNA function. This family consists of the PemK protein in addition to ChpA, ChpB, Kid and MazF.; GO: 0003677 DNA binding; PDB: 1M1F_A 2C06_A 3NFC_F 1UB4_B 1NE8_A.
Probab=45.96 E-value=13 Score=24.75 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=16.6
Q ss_pred cCCeeEEEcCCCCceEecCCeEEEEEE
Q 032928 66 LGEVVFVELPETGASVKQGGGFGVVES 92 (130)
Q Consensus 66 lG~I~~v~lp~vG~~v~~Gd~l~~IEs 92 (130)
-|+|+++++|..|.+..+..|+.+|-.
T Consensus 2 ~GdI~~v~~p~~~~e~~k~RP~vVls~ 28 (110)
T PF02452_consen 2 RGDIVWVDFPDFGSEMGKRRPAVVLSN 28 (110)
T ss_dssp TTEEEEEE-S--TTS--SEEEEEE-S-
T ss_pred CceEEEEECCCCCcccCCcccEEEEEe
Confidence 489999999877888788788877743
No 138
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=45.78 E-value=42 Score=26.96 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=26.6
Q ss_pred CCCCceEec-CCeEEEEEEcceeeeeecCcceEEEEec
Q 032928 75 PETGASVKQ-GGGFGVVESVKATSDVNSPISGEVIEVN 111 (130)
Q Consensus 75 p~vG~~v~~-Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN 111 (130)
-..|+.+.+ |+.|+.. ...++++|.+|.|+-..
T Consensus 226 ~~~~~~~~~~G~~la~~----~~~~~~ap~~g~vl~~p 259 (272)
T cd06910 226 FRGGETIPRAGTVIAHD----GGEPIRTPYDDCVLIMP 259 (272)
T ss_pred cCCcceeccCCcEEEEe----CCeEEeCCCCCEEEEcc
Confidence 366899999 9999994 23899999999886544
No 139
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=45.15 E-value=31 Score=25.32 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=23.2
Q ss_pred cchhccCCeeEEEcCCCCceEecCCeEEEE
Q 032928 61 HAQDHLGEVVFVELPETGASVKQGGGFGVV 90 (130)
Q Consensus 61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~I 90 (130)
.....-|.|..+.. +.|+.++.||.|+.|
T Consensus 101 I~Ap~~G~V~~i~v-~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 101 IVASSAGTVTAIHV-TPGQVVNPGDGLITI 129 (130)
T ss_pred EEcCCCeEEEEEEe-CCCCEeCCCCEEEEe
Confidence 33456788888766 899999999999886
No 140
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=43.85 E-value=75 Score=26.40 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=24.8
Q ss_pred ecchhccCCeeEEEcCCCCceEecCCeEEEEE
Q 032928 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVE 91 (130)
Q Consensus 60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IE 91 (130)
+.....-|.|..+.. +.|+.|..||+|+.||
T Consensus 243 eV~AP~sGtV~eIlV-keGD~V~vGqpL~~IE 273 (274)
T PLN02983 243 EIEADQSGTIVEILA-EDGKPVSVDTPLFVIE 273 (274)
T ss_pred EEecCCCeEEEEEec-CCCCEeCCCCEEEEec
Confidence 444556788888755 8999999999999986
No 141
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=43.58 E-value=29 Score=25.89 Aligned_cols=31 Identities=29% Similarity=0.324 Sum_probs=24.3
Q ss_pred ecchhccCCeeEEEcCCCCceEecCCeEEEEE
Q 032928 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVE 91 (130)
Q Consensus 60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IE 91 (130)
+.....-|.|..+- .+.|+.|..||+|+.|+
T Consensus 125 eI~a~~~G~i~~i~-v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 125 EIEADKSGVVTEIL-VENGQPVEFGQPLFVIE 155 (155)
T ss_pred EEecCCCeEEEEEE-cCCCCEeCCCCEEEEeC
Confidence 44455578888775 48899999999999885
No 142
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=42.26 E-value=1.1e+02 Score=28.05 Aligned_cols=72 Identities=14% Similarity=0.093 Sum_probs=37.6
Q ss_pred eEEEEeCCEEEEEeeecchhccCC-eeEEEcCCCCceEecCCeEEEEEE------cc-eeeeeecCcceEEEEecccccc
Q 032928 45 EWVKHEGSVATVGITDHAQDHLGE-VVFVELPETGASVKQGGGFGVVES------VK-ATSDVNSPISGEVIEVNTKLTE 116 (130)
Q Consensus 45 ~Wv~~e~~~~~vGiTd~a~~~lG~-I~~v~lp~vG~~v~~Gd~l~~IEs------~K-~~~~l~SPvsG~Vv~vN~~l~~ 116 (130)
..|..+|..+.|.+...+...-|. -+++++--.-..+..-|.=...+. ++ ...++.||.+|+|+++..+..+
T Consensus 466 ~~v~~~Gk~~~Ikl~~~g~~~~G~r~v~fevng~~r~v~v~d~~~~~~~~~~~~a~~~~~~~v~apm~G~V~~~~V~~Gd 545 (596)
T PRK14042 466 FDIILHGESYHVKVAGYGMIEHGQQSCFLWVDGVPEEVVVQHSELHDKIERSSVNNKIGPGDITVAIPGSIIAIHVSAGD 545 (596)
T ss_pred EEEEECCEEEEEEEeccccccCCceEEEEEEcCccceeecccccccccccccccCCCCCCCeEecCcceEEEEEEeCCCC
Confidence 456655667777776654433344 344555221122211111011111 11 2457999999999999876653
No 143
>PRK09812 toxin ChpB; Provisional
Probab=42.13 E-value=32 Score=24.38 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=23.5
Q ss_pred hccCCeeEEEc-CCCCceEecC-CeEEEEEE
Q 032928 64 DHLGEVVFVEL-PETGASVKQG-GGFGVVES 92 (130)
Q Consensus 64 ~~lG~I~~v~l-p~vG~~v~~G-d~l~~IEs 92 (130)
..-|+|+.++| |..|.+.+.+ .|+..|-+
T Consensus 7 ~~rGdI~~v~l~P~~G~E~~gk~RP~vVvS~ 37 (116)
T PRK09812 7 FERGDIVLVGFDPASGHEQQGAGRPALVLSV 37 (116)
T ss_pred CCCCcEEEEECCCCCccccCCCcCeEEEEcc
Confidence 44699999999 7889988755 89888864
No 144
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=39.62 E-value=42 Score=25.16 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=23.7
Q ss_pred ecchhccCCeeEEEcCCCCceEecCCeEEEE
Q 032928 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVV 90 (130)
Q Consensus 60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~I 90 (130)
+.....-|.|..+.. +.|+.++.||.|+.|
T Consensus 123 eI~Ap~~G~V~~i~v-~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 123 EIPAPKDGVVKKILV-KEGDTVDTGQPLIEL 152 (153)
T ss_pred EEecCCCeEEEEEEc-CCCCEECCCCEEEEe
Confidence 344456788887755 899999999999886
No 145
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=38.18 E-value=26 Score=28.68 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=17.7
Q ss_pred eeeeecCcceEEEEecccccc
Q 032928 96 TSDVNSPISGEVIEVNTKLTE 116 (130)
Q Consensus 96 ~~~l~SPvsG~Vv~vN~~l~~ 116 (130)
-..|+||++|.|.++|.+..+
T Consensus 154 ~~~I~AP~dGvV~~~~~~~G~ 174 (310)
T PRK10559 154 RTVIRAPADGWVTNLNVYTGE 174 (310)
T ss_pred CCEEECCCCeEEEeEecCCCC
Confidence 367999999999999877654
No 146
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=37.83 E-value=20 Score=27.70 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=15.0
Q ss_pred eeecCcceEEEEeccccc
Q 032928 98 DVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 98 ~l~SPvsG~Vv~vN~~l~ 115 (130)
.|+||++|.|..+|....
T Consensus 90 ~i~AP~dG~V~~~~~~~G 107 (265)
T TIGR00999 90 EVRSPFDGYITQKSVTLG 107 (265)
T ss_pred EEECCCCeEEEEEEcCCC
Confidence 479999999999987654
No 147
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=37.48 E-value=57 Score=31.68 Aligned_cols=55 Identities=27% Similarity=0.366 Sum_probs=35.7
Q ss_pred EeeecchhccCCeeEEEcCCCCceEecCCeEEEE-EEcceeeeeecCc--ceEEEEec
Q 032928 57 GITDHAQDHLGEVVFVELPETGASVKQGGGFGVV-ESVKATSDVNSPI--SGEVIEVN 111 (130)
Q Consensus 57 GiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~I-Es~K~~~~l~SPv--sG~Vv~vN 111 (130)
|+.-.+++.--+=.|.-..++||+|..||.+++| |..--.+.|..|- .|+|+.+-
T Consensus 106 g~~~~~l~~~~~w~f~p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~~ 163 (1017)
T PRK14698 106 GISAPALPRDKKWHFIPKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEIA 163 (1017)
T ss_pred CCCCCCCCCCCeeeeEeeeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEEc
Confidence 4443333332222333345889999999999999 4444466676665 79999983
No 148
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=37.08 E-value=47 Score=26.45 Aligned_cols=34 Identities=15% Similarity=0.193 Sum_probs=27.0
Q ss_pred ecchhccCCeeEEEcCCCCceEecCCeEEEEEEcc
Q 032928 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVESVK 94 (130)
Q Consensus 60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K 94 (130)
+.-.+.-|.|..+.. ++|+.|..|+.++.|+...
T Consensus 47 ~~~a~~~g~~~~~~~-~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 47 EVEAPAAGTLRRQVA-QEGETLPVGALLAVVADAE 80 (371)
T ss_pred EEecCCCeEEEEEEc-CCCCEeCCCCEEEEEecCC
Confidence 344566788888865 8899999999999998643
No 149
>PLN02964 phosphatidylserine decarboxylase
Probab=36.47 E-value=1.4e+02 Score=27.58 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=38.6
Q ss_pred eEEEEeC-CEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEc-ceeeeeecC
Q 032928 45 EWVKHEG-SVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV-KATSDVNSP 102 (130)
Q Consensus 45 ~Wv~~e~-~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~-K~~~~l~SP 102 (130)
.++..+. +...|.+-..+.-+.|.|..- .++|+.|++||.++-.+-+ -++.-|.-|
T Consensus 540 ~v~~iet~~~G~V~~v~VGA~~VgsI~~~--~~~g~~v~KGdE~G~F~fGGSTvVllFe~ 597 (644)
T PLN02964 540 AVCIISTAEFGKVAFVAIGATMVGSITFV--KKEGDHVKKGDELGYFSFGGSTVICVFEK 597 (644)
T ss_pred EEEEEEcCCCCEEEEEEEeeeEeeEEEEE--ecCCCEEccCcEeeeeecCCceEEEEecC
Confidence 4444443 245677777777888888753 2679999999999999985 455444433
No 150
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=35.39 E-value=39 Score=22.22 Aligned_cols=26 Identities=12% Similarity=0.164 Sum_probs=14.9
Q ss_pred eeEEEEeCCEEEEEeeecchhccCCeeE
Q 032928 44 HEWVKHEGSVATVGITDHAQDHLGEVVF 71 (130)
Q Consensus 44 H~Wv~~e~~~~~vGiTd~a~~~lG~I~~ 71 (130)
+.|+.+ ||.+.|-+++| +..-|.|+|
T Consensus 42 rI~I~~-GD~V~Ve~spy-d~tkgrIi~ 67 (68)
T TIGR00008 42 YIRILP-GDKVKVELSPY-DLTRGRITY 67 (68)
T ss_pred cEEECC-CCEEEEEECcc-cCCcEeEEe
Confidence 455533 56677777766 444455554
No 151
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=33.74 E-value=58 Score=32.66 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=34.9
Q ss_pred cCCeeEEEcCCCCceEecCCeEEEEEEcc--------eeeeeecCcceEEEEeccc
Q 032928 66 LGEVVFVELPETGASVKQGGGFGVVESVK--------ATSDVNSPISGEVIEVNTK 113 (130)
Q Consensus 66 lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K--------~~~~l~SPvsG~Vv~vN~~ 113 (130)
.|.+.+| +.|+.|++||.++++.... ...+|+|.++|+|.-.+..
T Consensus 402 ~gs~l~v---~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v~~~~~~ 454 (1364)
T CHL00117 402 PKSLLLV---QNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEMHWSTDV 454 (1364)
T ss_pred CCCEEEE---eCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEEEccccc
Confidence 3555555 8899999999999997532 3378999999998876643
No 152
>PLN00208 translation initiation factor (eIF); Provisional
Probab=32.75 E-value=45 Score=25.13 Aligned_cols=38 Identities=24% Similarity=0.566 Sum_probs=28.9
Q ss_pred ccCCcceeeCceeEEEEeCCEEEEEeeecchhccCCeeEEEcC
Q 032928 33 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELP 75 (130)
Q Consensus 33 ~~p~~~~ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp 75 (130)
.+|-.++. +.||+. |+.+.|.+.+| +..-|+|++.-.+
T Consensus 60 ~IpGKmRK---rIWI~~-GD~VlVel~~~-d~~KgdIv~ry~~ 97 (145)
T PLN00208 60 HIRGKMRK---KVWIAA-GDIILVGLRDY-QDDKADVILKYMP 97 (145)
T ss_pred EEecccee---eEEecC-CCEEEEEccCC-CCCEEEEEEEcCH
Confidence 44544443 699865 78999999999 7888999998654
No 153
>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=32.68 E-value=42 Score=22.32 Aligned_cols=39 Identities=18% Similarity=0.480 Sum_probs=28.7
Q ss_pred cccCCcceeeCceeEEEEeCCEEEEEeeecchhccCCeeEEEcC
Q 032928 32 SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELP 75 (130)
Q Consensus 32 ~~~p~~~~ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp 75 (130)
..+|-.++ . +.|++. ||.+.|.+++| +..-|+|++.-.+
T Consensus 27 a~i~gK~r--k-~iwI~~-GD~V~Ve~~~~-d~~kg~Iv~r~~~ 65 (77)
T cd05793 27 CRIRGKMR--K-RVWINE-GDIVLVAPWDF-QDDKADIIYKYTP 65 (77)
T ss_pred EEEchhhc--c-cEEEcC-CCEEEEEeccc-cCCEEEEEEEcCH
Confidence 34454444 2 699865 78999999999 7888999987543
No 154
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=32.18 E-value=34 Score=28.81 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=17.7
Q ss_pred eeeeecCcceEEEEecccccc
Q 032928 96 TSDVNSPISGEVIEVNTKLTE 116 (130)
Q Consensus 96 ~~~l~SPvsG~Vv~vN~~l~~ 116 (130)
-..|+||++|.|.+++.+..+
T Consensus 173 ~t~I~APfdG~V~~~~v~~G~ 193 (397)
T PRK15030 173 YTKVTSPISGRIGKSNVTEGA 193 (397)
T ss_pred CCEEEcCCCeEEeeeecCCCC
Confidence 357999999999999887664
No 155
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=31.75 E-value=69 Score=26.31 Aligned_cols=17 Identities=12% Similarity=0.216 Sum_probs=12.7
Q ss_pred CcceEEEEeccccccCc
Q 032928 102 PISGEVIEVNTKLTETP 118 (130)
Q Consensus 102 PvsG~Vv~vN~~l~~~P 118 (130)
++.|+|..|......++
T Consensus 344 ~~~g~V~~i~~~~~~~~ 360 (423)
T TIGR01843 344 ILNGKVKSISPDTFTDE 360 (423)
T ss_pred CccEEEEEECCCcccCc
Confidence 57899999987665443
No 156
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=31.54 E-value=75 Score=27.36 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=24.6
Q ss_pred hhccCCeeEEEcCCCCceEecCCeEEEEEEcc
Q 032928 63 QDHLGEVVFVELPETGASVKQGGGFGVVESVK 94 (130)
Q Consensus 63 ~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K 94 (130)
...-|.|..+.. ++|+.+..|++++.||...
T Consensus 50 a~~~G~v~~i~v-~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 50 APAAGVLSEILA-EEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred cCCCEEEEEEEe-CCCCEeCCCCEEEEEecCC
Confidence 445677777644 8999999999999998654
No 157
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=30.86 E-value=78 Score=25.39 Aligned_cols=30 Identities=20% Similarity=0.078 Sum_probs=15.7
Q ss_pred cchhccCCeeEEEcCCCCceEecCCeEEEEE
Q 032928 61 HAQDHLGEVVFVELPETGASVKQGGGFGVVE 91 (130)
Q Consensus 61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IE 91 (130)
...+.-|.|..+.+ .+|+.|..|+++++|.
T Consensus 207 I~AP~~G~V~~~~~-~~G~~v~~g~~l~~i~ 236 (334)
T TIGR00998 207 IRAPFDGYVARRFV-QVGQVVSPGQPLMAVV 236 (334)
T ss_pred EEcCCCcEEEEEec-CCCCEeCCCCeeEEEE
Confidence 33444455555544 4555555665555554
No 158
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=30.38 E-value=39 Score=29.72 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=16.9
Q ss_pred cCCCCceEecCCeEEEEEE
Q 032928 74 LPETGASVKQGGGFGVVES 92 (130)
Q Consensus 74 lp~vG~~v~~Gd~l~~IEs 92 (130)
..++|++|++||++++|-+
T Consensus 385 ~~k~Gd~V~~Gd~l~~i~~ 403 (437)
T TIGR02643 385 LLPLGDRVEKGEPLAVVHA 403 (437)
T ss_pred ccCCcCEeCCCCeEEEEEC
Confidence 3689999999999999973
No 159
>PRK00723 phosphatidylserine decarboxylase; Provisional
Probab=29.84 E-value=1.2e+02 Score=25.05 Aligned_cols=62 Identities=11% Similarity=0.197 Sum_probs=42.1
Q ss_pred eeeCc-eeEEEEeCC-EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEc-ceeeeeecC
Q 032928 39 KYASS-HEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV-KATSDVNSP 102 (130)
Q Consensus 39 ~ys~~-H~Wv~~e~~-~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~-K~~~~l~SP 102 (130)
.|..+ ..|+..+.+ ...+.+...+.-..|.|.. .. .+|+.+++||.++-++-+ -++.=+.-|
T Consensus 200 ~f~~NeR~v~~i~t~~~G~v~~v~VGa~~VgsI~~-~~-~~g~~v~KGeE~G~F~fGGSTvvllfe~ 264 (297)
T PRK00723 200 LFCENKREWSIFKSENFGDILYVEVGATCVGSIIQ-TY-KPNKKVKKGDEKGYFKFGGSTVILFFEK 264 (297)
T ss_pred ccccceeEEEEEEcCCCCEEEEEEEhheEeeEEEE-Ee-cCCCEEecCcCccccccCCCcEEEEEcC
Confidence 34433 466655543 4567777778888888874 22 569999999999999985 555444444
No 160
>TIGR02388 rpoC2_cyan DNA-directed RNA polymerase, beta'' subunit. The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria.
Probab=29.82 E-value=2.2e+02 Score=28.54 Aligned_cols=67 Identities=27% Similarity=0.264 Sum_probs=46.1
Q ss_pred eeEEEEeCCEEEEEeeecc----h---hccCCeeEEEcCCCCceEecCCeEEEEEEc-------ceeeeeecCcceEEEE
Q 032928 44 HEWVKHEGSVATVGITDHA----Q---DHLGEVVFVELPETGASVKQGGGFGVVESV-------KATSDVNSPISGEVIE 109 (130)
Q Consensus 44 H~Wv~~e~~~~~vGiTd~a----~---~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~-------K~~~~l~SPvsG~Vv~ 109 (130)
.-|+...+..++|.=.+.. + --.|.+.+| +.|+.|+++|.++.+-+. |..-+++|..+|+|..
T Consensus 372 ~a~~~~~~~~~~i~~~~~~~~~~~~~~ip~~s~l~v---~~~q~v~~~q~iae~~~~~~~~~~e~~~k~i~s~~~Ge~~~ 448 (1227)
T TIGR02388 372 DAKQVEVAGLLIIKPTGSITNKAQEIEVTQGSLLFV---EDGQTVDAGQLLAEIALGAVRKSTEKATKDVASDLAGEVKF 448 (1227)
T ss_pred EEEEEecceEEEEEecCCCccceEEEEECCCCEEEE---ECCCEEecCcEEEEeccCCcccceeEEEEEEecCCCceEEe
Confidence 3677665555555422322 1 113556665 889999999999999864 4457899999999987
Q ss_pred eccc
Q 032928 110 VNTK 113 (130)
Q Consensus 110 vN~~ 113 (130)
-+..
T Consensus 449 ~~~~ 452 (1227)
T TIGR02388 449 DKVV 452 (1227)
T ss_pred cccc
Confidence 7654
No 161
>smart00652 eIF1a eukaryotic translation initiation factor 1A.
Probab=29.28 E-value=52 Score=22.18 Aligned_cols=39 Identities=13% Similarity=0.388 Sum_probs=28.2
Q ss_pred cccCCcceeeCceeEEEEeCCEEEEEeeecchhccCCeeEEEcC
Q 032928 32 SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELP 75 (130)
Q Consensus 32 ~~~p~~~~ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp 75 (130)
..+|..++ .+.|++. ||.+.|.+++|. +.-|+|++.-.+
T Consensus 32 a~ipgK~R---k~iwI~~-GD~VlVe~~~~~-~~kg~Iv~r~~~ 70 (83)
T smart00652 32 ARIPGKMR---KKVWIRR-GDIVLVDPWDFQ-DVKADIIYKYTK 70 (83)
T ss_pred EEEchhhc---ccEEEcC-CCEEEEEecCCC-CCEEEEEEEeCH
Confidence 34454444 2799865 789999999985 778999987553
No 162
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=28.92 E-value=42 Score=29.16 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=17.3
Q ss_pred cCCCCceEecCCeEEEEEEc
Q 032928 74 LPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 74 lp~vG~~v~~Gd~l~~IEs~ 93 (130)
..++|++|++||++++|-+.
T Consensus 379 ~~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 379 HKKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred ecCCcCEeCCCCeEEEEeCC
Confidence 36899999999999999753
No 163
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=28.88 E-value=91 Score=26.85 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=23.4
Q ss_pred hhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928 63 QDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 63 ~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
...-|.|..+.. ++|+.+..|++++.||..
T Consensus 48 a~~~G~v~~i~~-~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 48 SPADGVLQEILF-KEGDTVESGQVLAILEEG 77 (403)
T ss_pred cCCCEEEEEEEe-CCCCEeCCCCEEEEEecC
Confidence 344577776644 889999999999999854
No 164
>PTZ00329 eukaryotic translation initiation factor 1A; Provisional
Probab=28.23 E-value=55 Score=24.95 Aligned_cols=38 Identities=21% Similarity=0.488 Sum_probs=28.1
Q ss_pred ccCCcceeeCceeEEEEeCCEEEEEeeecchhccCCeeEEEcC
Q 032928 33 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELP 75 (130)
Q Consensus 33 ~~p~~~~ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp 75 (130)
.+|-.++. +.||.. |+.+.|.+++| +..-|+|+|.-.+
T Consensus 60 ~I~GKmRK---~IWI~~-GD~VlVel~~y-d~~KgdIi~Ry~~ 97 (155)
T PTZ00329 60 HIRGKMRK---RVWINI-GDIILVSLRDF-QDSKADVILKYTP 97 (155)
T ss_pred Eeecccee---eEEecC-CCEEEEeccCC-CCCEEEEEEEcCH
Confidence 44444443 589865 78999999999 6778999987653
No 165
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=28.11 E-value=45 Score=29.32 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=16.5
Q ss_pred CCCCceEecCCeEEEEEE
Q 032928 75 PETGASVKQGGGFGVVES 92 (130)
Q Consensus 75 p~vG~~v~~Gd~l~~IEs 92 (130)
.+.|++|++||++++|-+
T Consensus 387 ~k~G~~V~~Gd~l~~i~~ 404 (440)
T PRK05820 387 ARLGDRVDAGEPLATLHA 404 (440)
T ss_pred cCCcCEECCCCeEEEEeC
Confidence 689999999999999974
No 166
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=27.99 E-value=71 Score=21.47 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=15.7
Q ss_pred eeEEEEeCCEEEEEeeecchhccCCeeE
Q 032928 44 HEWVKHEGSVATVGITDHAQDHLGEVVF 71 (130)
Q Consensus 44 H~Wv~~e~~~~~vGiTd~a~~~lG~I~~ 71 (130)
..|+.+ ||.+.|-+++|- ..-|+|++
T Consensus 44 ~i~I~~-GD~V~Ve~~~~d-~~kg~I~~ 69 (75)
T COG0361 44 RIRILP-GDVVLVELSPYD-LTKGRIVY 69 (75)
T ss_pred eEEeCC-CCEEEEEecccc-cccccEEE
Confidence 355543 667777777773 45556654
No 167
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=27.97 E-value=44 Score=29.89 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=16.4
Q ss_pred CCCCceEecCCeEEEEEE
Q 032928 75 PETGASVKQGGGFGVVES 92 (130)
Q Consensus 75 p~vG~~v~~Gd~l~~IEs 92 (130)
.++|++|++||++++|-+
T Consensus 453 ~k~Gd~V~~Gd~l~~i~a 470 (493)
T TIGR02645 453 VKVGDQVKKGDPLYTIYA 470 (493)
T ss_pred ccCCCEecCCCeEEEEEC
Confidence 589999999999999974
No 168
>PRK04350 thymidine phosphorylase; Provisional
Probab=27.65 E-value=45 Score=29.80 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=16.4
Q ss_pred CCCCceEecCCeEEEEEE
Q 032928 75 PETGASVKQGGGFGVVES 92 (130)
Q Consensus 75 p~vG~~v~~Gd~l~~IEs 92 (130)
.++|++|++||++++|-+
T Consensus 445 ~k~Gd~V~~G~~l~~i~a 462 (490)
T PRK04350 445 VKVGDKVKKGDPLYTIHA 462 (490)
T ss_pred ccCCCEecCCCeEEEEec
Confidence 589999999999999974
No 169
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=27.42 E-value=1e+02 Score=26.59 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=25.0
Q ss_pred hhccCCeeEEEcCCCCceEecCCeEEEEEEcc
Q 032928 63 QDHLGEVVFVELPETGASVKQGGGFGVVESVK 94 (130)
Q Consensus 63 ~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K 94 (130)
...-|.|..+-. ++|++|..|++|+.|+...
T Consensus 50 ap~~G~l~~i~~-~~G~~V~Vg~~I~~i~~~~ 80 (404)
T COG0508 50 APDAGVLAKILV-EEGDTVPVGAVIARIEEEG 80 (404)
T ss_pred CCCCeEEEEEec-cCCCEEcCCCeEEEEecCC
Confidence 345677777744 8999999999999998764
No 170
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=27.39 E-value=46 Score=29.82 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=16.4
Q ss_pred CCCCceEecCCeEEEEEE
Q 032928 75 PETGASVKQGGGFGVVES 92 (130)
Q Consensus 75 p~vG~~v~~Gd~l~~IEs 92 (130)
.++|++|++||++++|-+
T Consensus 454 ~k~Gd~V~~G~pl~~i~a 471 (500)
T TIGR03327 454 VKVGEKVKKGDPLYTIYA 471 (500)
T ss_pred ccCcCEeCCCCeEEEEEC
Confidence 689999999999999974
No 171
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=26.97 E-value=38 Score=29.24 Aligned_cols=20 Identities=20% Similarity=0.511 Sum_probs=18.4
Q ss_pred EcCCCCceEecCCeEEEEEE
Q 032928 73 ELPETGASVKQGGGFGVVES 92 (130)
Q Consensus 73 ~lp~vG~~v~~Gd~l~~IEs 92 (130)
|+|..|+.+.+|+|+++|=+
T Consensus 334 DiP~~GtviekgePl~sviA 353 (389)
T COG2232 334 DIPRPGTVIEKGEPLCSVIA 353 (389)
T ss_pred cCCCCCcccCCCCceeeeee
Confidence 89999999999999999854
No 172
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=26.75 E-value=49 Score=29.02 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=17.9
Q ss_pred cCCCCceEecCCeEEEEEEcc
Q 032928 74 LPETGASVKQGGGFGVVESVK 94 (130)
Q Consensus 74 lp~vG~~v~~Gd~l~~IEs~K 94 (130)
..++|++|++||++++|-+++
T Consensus 381 ~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 381 RKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred ccCCcCEeCCCCeEEEEeCCh
Confidence 368999999999999997544
No 173
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=26.39 E-value=2.5e+02 Score=22.17 Aligned_cols=25 Identities=16% Similarity=0.038 Sum_probs=19.1
Q ss_pred CceEecCCeEEEEEEcceeeeeecCc
Q 032928 78 GASVKQGGGFGVVESVKATSDVNSPI 103 (130)
Q Consensus 78 G~~v~~Gd~l~~IEs~K~~~~l~SPv 103 (130)
|+.+++||.++-++-+- ...+.-|-
T Consensus 189 g~~v~kGee~G~F~fGS-tVvllf~~ 213 (238)
T TIGR00163 189 PVKLLKGEEMGYFELGS-TVILLFEA 213 (238)
T ss_pred CceeccccEeeeEcCCC-eEEEEEeC
Confidence 89999999999999864 44455553
No 174
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.32 E-value=92 Score=25.48 Aligned_cols=46 Identities=17% Similarity=0.120 Sum_probs=29.4
Q ss_pred eEEEEeCCEEEEEeeecchhc---cCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928 45 EWVKHEGSVATVGITDHAQDH---LGEVVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 45 ~Wv~~e~~~~~vGiTd~a~~~---lG~I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
.|+..++ .+.-|+ +++... +| +...-+.+.|+.+++||+++.+++.
T Consensus 34 ~i~ar~~-~v~~G~-~~a~~i~~~l~-~~~~~~~~dG~~v~~g~~i~~i~G~ 82 (273)
T PRK05848 34 KIIAKSE-GVFSGE-KYALELLEMTG-IECVFTIKDGERFKKGDILMEIEGD 82 (273)
T ss_pred EEEEcCC-EEEECH-HHHHHHHHHcC-CEEEEEcCCCCEecCCCEEEEEEEC
Confidence 4444443 344565 444443 45 3333356899999999999999874
No 175
>KOG1775 consensus U6 snRNA-associated Sm-like protein [RNA processing and modification]
Probab=26.03 E-value=56 Score=22.27 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=36.0
Q ss_pred CceeEEEEeCC----EEEEEeeecchhccCCeeEEEcCCCCceEecCCeE
Q 032928 42 SSHEWVKHEGS----VATVGITDHAQDHLGEVVFVELPETGASVKQGGGF 87 (130)
Q Consensus 42 ~~H~Wv~~e~~----~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l 87 (130)
.+..||-..++ -..+|++||.--.+.+++..+.-..|..+++-+.+
T Consensus 17 gski~iimksdkE~~GtL~GFDd~VNmvLeDvtEye~~~egr~~tk~~~i 66 (84)
T KOG1775|consen 17 GSKIWIIMKSDKEFVGTLVGFDDFVNMVLEDVTEYEITPEGRRMTKLDQI 66 (84)
T ss_pred CceEEEEEccCceeeeEEechHHHHHHHHHhhhheeeCCCcceeeeeeee
Confidence 45688876544 24689999999999999998887888888776654
No 176
>PRK04012 translation initiation factor IF-1A; Provisional
Probab=25.98 E-value=62 Score=22.70 Aligned_cols=29 Identities=21% Similarity=0.475 Sum_probs=23.0
Q ss_pred eeEEEEeCCEEEEEeeecchhccCCeeEEEc
Q 032928 44 HEWVKHEGSVATVGITDHAQDHLGEVVFVEL 74 (130)
Q Consensus 44 H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~l 74 (130)
..|++. |+.+.|.+++|. ..-|+|++...
T Consensus 57 ~IwI~~-GD~VlVe~~~~~-~~kg~Iv~r~~ 85 (100)
T PRK04012 57 RMWIRE-GDVVIVAPWDFQ-DEKADIIWRYT 85 (100)
T ss_pred cEEecC-CCEEEEEecccC-CCEEEEEEEcC
Confidence 688864 789999999996 67788888754
No 177
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=25.88 E-value=1e+02 Score=25.01 Aligned_cols=47 Identities=23% Similarity=0.215 Sum_probs=30.1
Q ss_pred eEEEEeCCEEEEEeeecchhccCC--eeEEEcCCCCceEecCCeEEEEEEc
Q 032928 45 EWVKHEGSVATVGITDHAQDHLGE--VVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 45 ~Wv~~e~~~~~vGiTd~a~~~lG~--I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
.|+..++ .+.-|+ +++...+.. +......+.|+.+++|++++.+++.
T Consensus 30 ~~~ar~~-~v~~G~-~~~~~i~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~ 78 (265)
T TIGR00078 30 SLVAKED-GVLAGL-PVARRVFEQLGVQVEWLVKDGDRVEPGEVVAEVEGP 78 (265)
T ss_pred EEEecCC-EEEECH-HHHHHHHHHcCeEEEEEeCCCCEecCCCEEEEEEEc
Confidence 4555543 344675 444444332 3333456899999999999999874
No 178
>PF11776 DUF3315: Domain of unknown function (DUF3315); InterPro: IPR024572 This is a bacterial family of uncharacterised proteins, which include YohN from Escherichia coli K12.; PDB: 2L1S_A.
Probab=25.29 E-value=52 Score=20.22 Aligned_cols=18 Identities=28% Similarity=0.541 Sum_probs=13.3
Q ss_pred CceeEEEEeCCEEEEEee
Q 032928 42 SSHEWVKHEGSVATVGIT 59 (130)
Q Consensus 42 ~~H~Wv~~e~~~~~vGiT 59 (130)
.+|.|++..++.+.|-+.
T Consensus 28 ~G~~Wvrv~~dyvLv~~~ 45 (52)
T PF11776_consen 28 RGYHWVRVGGDYVLVAIA 45 (52)
T ss_dssp TTEEEEE-SSEEEEEETT
T ss_pred CCCEeEEECCeEEEEEcC
Confidence 479999998888777643
No 179
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=25.05 E-value=84 Score=24.72 Aligned_cols=29 Identities=34% Similarity=0.656 Sum_probs=23.8
Q ss_pred hccCCeeEEEc-CCCCceEecCCeEEEEEE
Q 032928 64 DHLGEVVFVEL-PETGASVKQGGGFGVVES 92 (130)
Q Consensus 64 ~~lG~I~~v~l-p~vG~~v~~Gd~l~~IEs 92 (130)
+..|...||.. |+.|+.+++|+.+..|+-
T Consensus 160 D~~Gq~hyv~veP~~~~~~~~G~~VLlv~r 189 (202)
T PF07290_consen 160 DQFGQLHYVMVEPEAGEEFKQGTEVLLVDR 189 (202)
T ss_pred ecCCCEEEEEEeeCCCCCCCCCCEEEEEEe
Confidence 56788887765 788999999999999965
No 180
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.73 E-value=1.1e+02 Score=25.04 Aligned_cols=40 Identities=15% Similarity=0.023 Sum_probs=26.4
Q ss_pred EEEEeeecch--hccC-CeeEEEcCCCCceEecCCeEEEEEEc
Q 032928 54 ATVGITDHAQ--DHLG-EVVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 54 ~~vGiTd~a~--~~lG-~I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
+.=|+....+ +.+| ++..--+.+.|+.+++|++++.+++.
T Consensus 48 i~~G~~~~~~i~~~~~~~~~~~~~~~dG~~v~~g~~i~~i~G~ 90 (277)
T PRK05742 48 VIAGTAWVDAVFRQLDPRVAVHWQVADGERVSANQVLFHLEGP 90 (277)
T ss_pred EEECHHHHHHHHHHcCCceEEEEEeCCCCEEcCCCEEEEEEEc
Confidence 4457533322 3455 34333456899999999999999874
No 181
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=24.18 E-value=1.1e+02 Score=25.47 Aligned_cols=40 Identities=13% Similarity=0.046 Sum_probs=26.9
Q ss_pred EEEEEeeecc---hhccCC-eeEEEcCCCCceEecCCeEEEEEEc
Q 032928 53 VATVGITDHA---QDHLGE-VVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 53 ~~~vGiTd~a---~~~lG~-I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
-+.-|+ +++ .+.+|. +..--+.+.|+.+++|+.++.+++.
T Consensus 66 gi~aG~-~~a~~vf~~l~~~~~v~~~~~dG~~v~~G~~i~~i~G~ 109 (296)
T PRK09016 66 GVFCGK-RWVEEVFIQLGDDVTIEWHVDDGDVITANQTLFELTGP 109 (296)
T ss_pred EEEECH-HHHHHHHHHcCCCeEEEEEcCCCCEecCCCEEEEEEEC
Confidence 344674 333 345564 4333456899999999999999874
No 182
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=23.63 E-value=85 Score=26.46 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=16.2
Q ss_pred CCCCceEecCCeEEEEEEc
Q 032928 75 PETGASVKQGGGFGVVESV 93 (130)
Q Consensus 75 p~vG~~v~~Gd~l~~IEs~ 93 (130)
.++|+.|++||.|+.+-+.
T Consensus 274 Vk~Gq~V~~Gq~Ig~~G~t 292 (319)
T PRK10871 274 VREQQEVKAGQKIATMGST 292 (319)
T ss_pred cCCcCEECCCCeEEeEcCC
Confidence 5789999999999988543
No 183
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=23.42 E-value=1.1e+02 Score=24.72 Aligned_cols=46 Identities=17% Similarity=0.191 Sum_probs=28.6
Q ss_pred EEEEeCCEEEEEeeecchhccCCe-eEEE-cCCCCceEecCCeEEEEEEc
Q 032928 46 WVKHEGSVATVGITDHAQDHLGEV-VFVE-LPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 46 Wv~~e~~~~~vGiTd~a~~~lG~I-~~v~-lp~vG~~v~~Gd~l~~IEs~ 93 (130)
|+..++ -+.=|+ +++...+..+ ..++ +.+.|+.+++|++++.+|+.
T Consensus 33 ~~ak~~-gv~aG~-~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~ 80 (272)
T cd01573 33 FRARDP-GVLCGT-EEAARILELLGLEVDLAAASGSRVAAGAVLLEAEGP 80 (272)
T ss_pred EEECCC-EEEECH-HHHHHHHHHcCcEEEEEcCCCCEecCCCEEEEEEEc
Confidence 444443 344675 4444433221 3344 56899999999999999874
No 184
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=23.10 E-value=87 Score=28.45 Aligned_cols=44 Identities=27% Similarity=0.443 Sum_probs=24.9
Q ss_pred hccCCeeEEEcCCCCceEec----CCeEEEEEEcceeeeeecCcceEEEEecc
Q 032928 64 DHLGEVVFVELPETGASVKQ----GGGFGVVESVKATSDVNSPISGEVIEVNT 112 (130)
Q Consensus 64 ~~lG~I~~v~lp~vG~~v~~----Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~ 112 (130)
+.-|++. .|.++.|.+-+ ||=++..=++ ..++||++|+|..+-+
T Consensus 468 P~~G~~~--~l~~v~D~vFs~~~~G~G~ai~P~~---~~v~aP~~G~v~~~~~ 515 (610)
T TIGR01995 468 PVAGEML--PLNEVPDEVFSSGAMGKGIAILPTE---GEVVAPVDGTVTAVFP 515 (610)
T ss_pred ccceEEe--eHhhCCCccccccCcCCceEeeCCC---CEEECCCCeEEEEEcC
Confidence 3445544 33344444444 4445444322 4789999999887743
No 185
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=22.81 E-value=94 Score=28.19 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=25.7
Q ss_pred ecchhccCCeeEEEcCCCCceEecCCeEEEEE
Q 032928 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVE 91 (130)
Q Consensus 60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IE 91 (130)
+.....-|.|..+.. +.|+.|..||+++.||
T Consensus 561 ~V~Ap~~G~V~~i~v-~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 561 EIQAPVDGTVKEILV-KEGDRVNPGDVLMEIE 591 (592)
T ss_pred EEEcCCCeEEEEEEe-CCCCEeCCCCEEEEec
Confidence 455667888888865 8899999999999986
No 186
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=22.72 E-value=1.2e+02 Score=23.84 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=21.9
Q ss_pred hhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928 63 QDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 63 ~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
.+.-|-|..+.+ ..|+.+.+|++++.|...
T Consensus 139 AP~~G~V~~~~~-~~G~~v~~g~~l~~i~~~ 168 (322)
T TIGR01730 139 APFDGTIGRRLV-EVGAYVTAGQTLATIVDL 168 (322)
T ss_pred CCCCcEEEEEEc-CCCceeCCCCcEEEEEcC
Confidence 344566666666 678899999998888654
No 187
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=22.60 E-value=1.3e+02 Score=24.30 Aligned_cols=47 Identities=21% Similarity=0.255 Sum_probs=30.2
Q ss_pred eEEEEeCCEEEEEeeecchhccCCe---eEE-EcCCCCceEecCCeEEEEEEc
Q 032928 45 EWVKHEGSVATVGITDHAQDHLGEV---VFV-ELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 45 ~Wv~~e~~~~~vGiTd~a~~~lG~I---~~v-~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
.|+..++ .+.-|+ +++...+... ..+ ...+.|+.+++|++++.+|+.
T Consensus 32 ~~~ar~~-~v~~G~-~~~~~i~~~~~~~l~v~~~~~dG~~v~~g~~i~~i~G~ 82 (268)
T cd01572 32 RLIAKEE-GVLAGL-PVAEEVFELLDPGIEVEWLVKDGDRVEPGQVLATVEGP 82 (268)
T ss_pred EEEEcCC-EEEECH-HHHHHHHHHcCCCeEEEEEeCCCCEecCCCEEEEEEEC
Confidence 4444443 344464 5655554333 334 345899999999999999974
No 188
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=22.51 E-value=1.1e+02 Score=25.23 Aligned_cols=28 Identities=18% Similarity=0.472 Sum_probs=21.1
Q ss_pred eEEEEEEcceeeeeecCcceEEEEecccc
Q 032928 86 GFGVVESVKATSDVNSPISGEVIEVNTKL 114 (130)
Q Consensus 86 ~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l 114 (130)
.-|.|++.+. ..|.+|++|.|.+++.+.
T Consensus 52 ~~G~v~~~~~-~~l~a~~~G~V~~v~v~~ 79 (370)
T PRK11578 52 ATGKLDALRK-VDVGAQVSGQLKTLSVAI 79 (370)
T ss_pred EEEEEEeeeE-EEEecccceEEEEEEcCC
Confidence 4566666544 489999999999998544
No 189
>cd05792 S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain. eIF1AD is also known as MGC11102 protein. Little is known about the function of eIF1AD. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins, including translation initiation factor IF1A (also referred to as eIF1A in eukaryotes). eIF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors.
Probab=21.41 E-value=1.3e+02 Score=20.20 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=23.4
Q ss_pred ceeEEEEeCCEEEEEeeecchhccCCeeEEEc
Q 032928 43 SHEWVKHEGSVATVGITDHAQDHLGEVVFVEL 74 (130)
Q Consensus 43 ~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~l 74 (130)
...|++. |+.+.|...++.-+.-|+|+++-.
T Consensus 35 k~iWIkr-Gd~VlV~p~~~~~kvkgeIv~i~~ 65 (78)
T cd05792 35 KNIWIKR-GDFVLVEPIEEGDKVKAEIVKILT 65 (78)
T ss_pred ccEEEEe-CCEEEEEecccCCceEEEEEEEEC
Confidence 4789975 678888887875567788888744
No 190
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.67 E-value=1.4e+02 Score=24.57 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=27.6
Q ss_pred EEEEEee--ecchhccCC-eeEEEcCCCCceEecCCeEEEEEEc
Q 032928 53 VATVGIT--DHAQDHLGE-VVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 53 ~~~vGiT--d~a~~~lG~-I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
-+.=|+. ....+.+|. +..--+.+.|+.+++|++++.+++.
T Consensus 51 gv~aG~~~a~~vf~~~~~~~~~~~~~~dG~~v~~g~~i~~i~G~ 94 (281)
T PRK06106 51 GVIAGLDLARLAFRLVDPEIEMRRHLPDGAAVAPGDVIATISGP 94 (281)
T ss_pred eEEECHHHHHHHHHHhCCceEEEEEeCCCCEEcCCCEEEEEEEC
Confidence 3446754 223355564 4443456899999999999999864
No 191
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=20.59 E-value=3.5e+02 Score=21.83 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=19.7
Q ss_pred CCceEecCCeEEEEEEcceeeeeecCc
Q 032928 77 TGASVKQGGGFGVVESVKATSDVNSPI 103 (130)
Q Consensus 77 vG~~v~~Gd~l~~IEs~K~~~~l~SPv 103 (130)
.|+.+++||.+|-++-+-+ ..+.-|-
T Consensus 218 ~~~~v~kGee~G~F~fGST-Vvllf~~ 243 (265)
T PRK03934 218 ENLKLKKGEELGNFEMGST-IVLFSQK 243 (265)
T ss_pred CCceEccccEeeEEccCCE-EEEEEeC
Confidence 4899999999999998644 4455453
No 192
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=20.18 E-value=1.7e+02 Score=18.58 Aligned_cols=33 Identities=21% Similarity=0.105 Sum_probs=15.2
Q ss_pred CCCCceEecCCeEEEEEEcceeeeeecCcceEEEE
Q 032928 75 PETGASVKQGGGFGVVESVKATSDVNSPISGEVIE 109 (130)
Q Consensus 75 p~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~ 109 (130)
|++|+.|.. .+..+....+..++.++..|.+-.
T Consensus 4 p~~GdiV~G--~V~~v~~~~~~V~i~~~~~g~l~~ 36 (82)
T cd04454 4 PDVGDIVIG--IVTEVNSRFWKVDILSRGTARLED 36 (82)
T ss_pred CCCCCEEEE--EEEEEcCCEEEEEeCCCceEEeec
Confidence 455544421 233334444555555555555443
No 193
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=20.06 E-value=1.4e+02 Score=24.53 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=29.0
Q ss_pred eEEEEeCCEEEEEeeecch---hccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928 45 EWVKHEGSVATVGITDHAQ---DHLGEVVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 45 ~Wv~~e~~~~~vGiTd~a~---~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
.|+..+++ +.=|+ +++. +.+| +..--+.+.|+.+++|+.++++++.
T Consensus 36 ~~~are~g-v~~G~-~~~~~i~~~l~-~~~~~~~~dG~~v~~g~~i~~~~G~ 84 (277)
T TIGR01334 36 TFTARDEG-IVSGV-SEAAKLLKQLG-ASIDYAVPSGSRALAGTLLLEAKGS 84 (277)
T ss_pred EEEEcCCE-EEECH-HHHHHHHHHcC-CEEEEEeCCCCEeCCCCEEEEEEec
Confidence 34444433 33564 4444 4455 4433356889999999999999874
Done!