Query 032928
Match_columns 130
No_of_seqs 128 out of 1251
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 12:20:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hgb_A Glycine cleavage system 100.0 1E-36 3.4E-41 228.5 9.1 97 31-127 22-119 (155)
2 3mxu_A Glycine cleavage system 100.0 3.8E-36 1.3E-40 223.0 9.9 95 33-127 20-114 (143)
3 3tzu_A GCVH, glycine cleavage 100.0 1.1E-36 3.9E-41 224.4 7.0 96 32-127 8-109 (137)
4 3klr_A Glycine cleavage system 100.0 9.5E-36 3.2E-40 216.5 10.1 91 37-127 2-92 (125)
5 1hpc_A H protein of the glycin 100.0 2.7E-34 9.2E-39 210.1 9.5 96 32-127 1-96 (131)
6 1onl_A Glycine cleavage system 100.0 3.4E-34 1.1E-38 208.8 9.5 95 33-127 2-96 (128)
7 3a7l_A H-protein, glycine clea 100.0 6.9E-34 2.4E-38 207.1 9.9 95 33-127 2-97 (128)
8 1zko_A Glycine cleavage system 100.0 3E-31 1E-35 195.1 9.6 93 35-127 13-105 (136)
9 1gjx_A Pyruvate dehydrogenase; 98.7 2.6E-09 8.9E-14 69.9 1.5 59 58-117 7-65 (81)
10 2kcc_A Acetyl-COA carboxylase 98.7 2.2E-08 7.4E-13 66.5 5.8 53 61-115 8-60 (84)
11 1bdo_A Acetyl-COA carboxylase; 98.7 2.7E-08 9.4E-13 64.8 4.7 54 62-115 8-67 (80)
12 3crk_C Dihydrolipoyllysine-res 98.6 4.7E-08 1.6E-12 65.1 5.4 60 56-116 8-68 (87)
13 1ghj_A E2, E2, the dihydrolipo 98.6 3E-08 1E-12 64.6 3.9 49 66-115 15-63 (79)
14 1qjo_A Dihydrolipoamide acetyl 98.6 4.7E-08 1.6E-12 63.5 4.9 56 58-115 7-62 (80)
15 1z6h_A Biotin/lipoyl attachmen 98.6 1E-07 3.5E-12 60.4 6.0 52 63-115 4-55 (72)
16 1k8m_A E2 component of branche 98.6 4E-08 1.4E-12 66.6 4.2 60 55-115 6-66 (93)
17 2d5d_A Methylmalonyl-COA decar 98.5 1.8E-07 6.1E-12 59.4 6.2 53 61-114 8-60 (74)
18 2l5t_A Lipoamide acyltransfera 98.5 3.6E-08 1.2E-12 63.8 2.8 49 66-115 15-63 (77)
19 1dcz_A Transcarboxylase 1.3S s 98.5 2.8E-07 9.5E-12 59.2 6.7 52 62-114 12-63 (77)
20 1iyu_A E2P, dihydrolipoamide a 98.5 1.6E-07 5.6E-12 61.0 5.2 47 68-115 14-60 (79)
21 2dnc_A Pyruvate dehydrogenase 98.5 1.8E-07 6.1E-12 64.1 5.2 49 66-115 21-69 (98)
22 2k7v_A Dihydrolipoyllysine-res 98.4 1.7E-08 5.8E-13 66.9 -1.1 53 63-116 7-59 (85)
23 2dne_A Dihydrolipoyllysine-res 98.4 2.1E-07 7.2E-12 64.9 4.4 50 66-116 21-70 (108)
24 1y8o_B Dihydrolipoyllysine-res 98.4 3.2E-07 1.1E-11 66.2 5.4 49 67-116 42-90 (128)
25 3n6r_A Propionyl-COA carboxyla 98.4 6.8E-07 2.3E-11 79.0 8.1 53 62-115 616-668 (681)
26 2dn8_A Acetyl-COA carboxylase 98.4 5.7E-07 1.9E-11 61.3 5.6 52 61-114 20-71 (100)
27 2jku_A Propionyl-COA carboxyla 98.4 1.2E-07 4E-12 64.2 2.0 54 61-115 28-81 (94)
28 2ejm_A Methylcrotonoyl-COA car 98.3 6.9E-07 2.3E-11 60.8 5.2 52 63-115 19-70 (99)
29 1pmr_A Dihydrolipoyl succinylt 98.3 2.6E-08 9E-13 65.2 -2.7 49 66-115 16-64 (80)
30 3u9t_A MCC alpha, methylcroton 98.2 3.5E-07 1.2E-11 80.7 2.8 74 42-116 572-659 (675)
31 3va7_A KLLA0E08119P; carboxyla 98.1 2.7E-06 9.3E-11 79.7 5.7 54 61-115 1170-1223(1236)
32 3hbl_A Pyruvate carboxylase; T 98.1 6.2E-06 2.1E-10 76.8 7.9 53 63-116 1082-1134(1150)
33 3dva_I Dihydrolipoyllysine-res 97.8 2.9E-06 1E-10 71.5 0.0 49 67-116 17-65 (428)
34 1zy8_K Pyruvate dehydrogenase 97.8 3.3E-06 1.1E-10 66.0 0.0 48 67-115 18-65 (229)
35 2k32_A A; NMR {Campylobacter j 97.7 2.9E-05 9.9E-10 53.4 4.2 52 63-115 6-86 (116)
36 3bg3_A Pyruvate carboxylase, m 97.6 1.6E-05 5.6E-10 71.0 1.7 52 63-115 654-705 (718)
37 2qf7_A Pyruvate carboxylase pr 97.5 3.2E-05 1.1E-09 72.1 2.9 70 45-115 1061-1151(1165)
38 3d4r_A Domain of unknown funct 96.8 0.002 6.8E-08 48.5 5.7 49 64-113 106-155 (169)
39 3ne5_B Cation efflux system pr 96.2 0.008 2.7E-07 49.5 6.0 56 60-115 123-226 (413)
40 3na6_A Succinylglutamate desuc 96.1 0.012 4.2E-07 47.5 6.5 40 74-113 271-314 (331)
41 3fpp_A Macrolide-specific effl 96.0 0.0057 2E-07 48.3 4.2 33 60-93 33-65 (341)
42 3lnn_A Membrane fusion protein 95.9 0.0093 3.2E-07 47.4 5.1 34 60-94 59-92 (359)
43 2f1m_A Acriflavine resistance 95.9 0.0034 1.2E-07 48.3 2.4 32 61-93 25-56 (277)
44 3fmc_A Putative succinylglutam 95.7 0.018 6.3E-07 47.3 6.1 42 74-115 304-351 (368)
45 3cdx_A Succinylglutamatedesucc 95.6 0.024 8.2E-07 46.0 6.4 38 75-112 282-323 (354)
46 1vf7_A Multidrug resistance pr 95.1 0.0089 3E-07 48.2 2.3 31 62-93 47-77 (369)
47 4dk0_A Putative MACA; alpha-ha 94.4 0.006 2.1E-07 48.6 -0.5 32 61-93 35-66 (369)
48 2qj8_A MLR6093 protein; struct 94.0 0.11 3.7E-06 41.6 6.1 40 73-112 270-313 (332)
49 2auk_A DNA-directed RNA polyme 89.3 0.37 1.3E-05 36.2 4.0 42 67-113 61-102 (190)
50 1f3z_A EIIA-GLC, glucose-speci 80.6 1 3.5E-05 33.2 2.7 46 61-111 15-64 (161)
51 2gpr_A Glucose-permease IIA co 80.3 0.73 2.5E-05 33.6 1.8 46 61-111 10-59 (154)
52 2xha_A NUSG, transcription ant 79.6 1.9 6.4E-05 32.8 3.9 37 67-112 20-56 (193)
53 1ax3_A Iiaglc, glucose permeas 76.4 1.3 4.3E-05 32.7 2.1 45 62-111 16-64 (162)
54 1bdo_A Acetyl-COA carboxylase; 71.7 2.7 9.4E-05 26.1 2.6 30 61-91 51-80 (80)
55 2gpr_A Glucose-permease IIA co 70.2 3.6 0.00012 29.9 3.2 39 53-94 76-114 (154)
56 2l5t_A Lipoamide acyltransfera 70.2 3.8 0.00013 25.2 3.0 31 60-91 46-76 (77)
57 1f3z_A EIIA-GLC, glucose-speci 68.7 4.6 0.00016 29.6 3.6 37 53-92 81-117 (161)
58 1ax3_A Iiaglc, glucose permeas 68.4 2.1 7.2E-05 31.4 1.7 39 53-94 81-119 (162)
59 2dn8_A Acetyl-COA carboxylase 68.1 1.5 5.2E-05 28.9 0.8 32 85-116 6-37 (100)
60 1iyu_A E2P, dihydrolipoamide a 67.9 5.6 0.00019 24.6 3.5 32 61-93 44-75 (79)
61 1qjo_A Dihydrolipoamide acetyl 64.8 3.3 0.00011 25.6 1.9 33 60-93 45-77 (80)
62 3our_B EIIA, phosphotransferas 63.9 6.3 0.00022 29.6 3.6 38 53-93 103-140 (183)
63 2xhc_A Transcription antitermi 63.2 6.3 0.00021 32.2 3.7 38 66-112 59-96 (352)
64 1dcz_A Transcarboxylase 1.3S s 62.8 4.3 0.00015 24.8 2.1 31 60-91 47-77 (77)
65 2k7v_A Dihydrolipoyllysine-res 62.5 5.7 0.0002 25.0 2.7 33 60-93 41-73 (85)
66 2d5d_A Methylmalonyl-COA decar 61.8 5.8 0.0002 23.7 2.6 29 62-91 46-74 (74)
67 2bco_A Succinylglutamate desuc 61.5 3 0.0001 33.6 1.5 32 76-111 282-313 (350)
68 1k8m_A E2 component of branche 61.0 4.7 0.00016 26.2 2.1 33 60-93 49-81 (93)
69 1z6h_A Biotin/lipoyl attachmen 59.6 7.4 0.00025 23.3 2.8 31 61-92 39-69 (72)
70 1ghj_A E2, E2, the dihydrolipo 56.7 7 0.00024 24.1 2.4 50 39-92 28-77 (79)
71 2dnc_A Pyruvate dehydrogenase 54.4 7.1 0.00024 25.7 2.2 33 61-94 53-86 (98)
72 1yw4_A Succinylglutamate desuc 53.2 1.8 6.3E-05 34.8 -1.1 42 76-117 280-326 (341)
73 3crk_C Dihydrolipoyllysine-res 49.0 14 0.00049 23.2 3.0 50 40-93 33-83 (87)
74 2kcc_A Acetyl-COA carboxylase 48.4 9.7 0.00033 24.0 2.0 33 60-94 44-76 (84)
75 3our_B EIIA, phosphotransferas 45.5 18 0.0006 27.2 3.3 45 63-112 39-87 (183)
76 1y8o_B Dihydrolipoyllysine-res 42.7 8.9 0.0003 26.8 1.3 31 63-94 75-106 (128)
77 1m1f_A KID toxin protein; toxi 40.0 11 0.00038 24.7 1.4 41 66-106 3-48 (110)
78 2xha_A NUSG, transcription ant 39.0 9.8 0.00034 28.8 1.0 29 76-110 86-114 (193)
79 2xhc_A Transcription antitermi 37.8 13 0.00043 30.4 1.6 29 76-110 126-154 (352)
80 2f1m_A Acriflavine resistance 37.1 29 0.001 25.8 3.5 29 86-115 13-41 (277)
81 1brw_A PYNP, protein (pyrimidi 34.6 27 0.00091 29.3 3.1 22 74-95 381-402 (433)
82 3lnn_A Membrane fusion protein 34.0 30 0.001 26.8 3.2 31 85-115 45-76 (359)
83 1ub4_A MAZF protein; toxin, an 33.9 14 0.00048 24.3 1.1 43 64-106 6-53 (110)
84 2dsj_A Pyrimidine-nucleoside ( 33.4 28 0.00097 29.1 3.1 21 74-94 373-393 (423)
85 1ne8_A Conserved hypothetical 31.7 18 0.00062 23.8 1.4 29 65-93 5-34 (117)
86 3it5_A Protease LASA; metallop 31.6 28 0.00094 25.5 2.4 18 75-92 87-104 (182)
87 3gqb_A V-type ATP synthase alp 30.9 1.1E+02 0.0038 26.7 6.5 36 75-110 123-160 (578)
88 3h5q_A PYNP, pyrimidine-nucleo 30.8 27 0.00091 29.4 2.5 21 74-94 384-404 (436)
89 3vr4_A V-type sodium ATPase ca 30.3 91 0.0031 27.3 5.8 36 75-110 131-169 (600)
90 1uou_A Thymidine phosphorylase 30.2 35 0.0012 29.0 3.1 22 73-94 415-436 (474)
91 2tpt_A Thymidine phosphorylase 27.1 28 0.00094 29.2 2.0 23 72-94 383-406 (440)
92 3mfy_A V-type ATP synthase alp 26.2 1.2E+02 0.0039 26.7 5.7 37 74-110 123-162 (588)
93 3fpp_A Macrolide-specific effl 25.6 59 0.002 24.9 3.5 29 86-115 22-50 (341)
94 1o4u_A Type II quinolic acid p 24.0 70 0.0024 25.1 3.7 37 54-93 55-95 (285)
95 3tuf_B Stage II sporulation pr 23.8 30 0.001 26.7 1.5 19 75-93 137-155 (245)
96 3r8s_R 50S ribosomal protein L 22.2 1.7E+02 0.0057 19.6 4.9 23 67-89 17-41 (103)
97 3n6r_A Propionyl-COA carboxyla 21.9 49 0.0017 28.9 2.6 29 62-91 653-681 (681)
98 2dgy_A MGC11102 protein; EIF-1 21.4 27 0.00093 23.9 0.7 38 32-73 42-79 (111)
99 3nyy_A Putative glycyl-glycine 20.3 47 0.0016 25.6 2.0 18 75-92 184-201 (252)
100 3lu0_D DNA-directed RNA polyme 20.2 70 0.0024 30.9 3.4 34 76-111 1006-1039(1407)
No 1
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=100.00 E-value=1e-36 Score=228.53 Aligned_cols=97 Identities=47% Similarity=0.757 Sum_probs=93.6
Q ss_pred ccccCCcceeeCceeEEEEeCC-EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEE
Q 032928 31 FSSVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIE 109 (130)
Q Consensus 31 ~~~~p~~~~ys~~H~Wv~~e~~-~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~ 109 (130)
++++|++++|+++|+||+.+++ .++||||+|||+.+|+|+||+||++|++|++||+|++|||.|++++|+||++|+|++
T Consensus 22 m~~~P~~l~Yt~~HeWv~~egdg~~~VGITd~Aq~~LGdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~Vve 101 (155)
T 3hgb_A 22 MSDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSE 101 (155)
T ss_dssp CCCCCTTCEECTTSEEEEEEETTEEEEEECHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEE
T ss_pred cccCcccceECCCCEEEEEcCCcEEEEeeCHHHHHhcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEE
Confidence 4569999999999999999876 999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccCcccccCCCCc
Q 032928 110 VNTKLTETPGLVIFSVNS 127 (130)
Q Consensus 110 vN~~l~~~P~llN~~~~~ 127 (130)
+|++|.++|++||++|.+
T Consensus 102 vN~~L~d~PeliN~dPyg 119 (155)
T 3hgb_A 102 VNSDLDGTPQLVNSDPYG 119 (155)
T ss_dssp ECTHHHHCTTHHHHCTTT
T ss_pred EhhhhhhChHhhccCCCC
Confidence 999999999999999974
No 2
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=100.00 E-value=3.8e-36 Score=222.95 Aligned_cols=95 Identities=45% Similarity=0.791 Sum_probs=91.8
Q ss_pred ccCCcceeeCceeEEEEeCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecc
Q 032928 33 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNT 112 (130)
Q Consensus 33 ~~p~~~~ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~ 112 (130)
..+++++|+++|+||+.+|+.++||||+|||+++|+|+||+||++|++|++||+|++|||+|++++|+||++|+|+++|+
T Consensus 20 ~~~~~l~Yt~~HeWv~~eg~~~~VGITd~Aq~~LGdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~ 99 (143)
T 3mxu_A 20 GSMSKTYFTQDHEWLSVEGQVVTVGITDYAQEQLGDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINA 99 (143)
T ss_dssp TCCCEEEECSSSEEEEEETTEEEEEECHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECG
T ss_pred chhccceeCCCCEEEEEcCCEEEEeeCHHHHhhcCCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccccCCCCc
Q 032928 113 KLTETPGLVIFSVNS 127 (130)
Q Consensus 113 ~l~~~P~llN~~~~~ 127 (130)
+|.++|++||++|.+
T Consensus 100 ~L~d~PeliN~dPy~ 114 (143)
T 3mxu_A 100 ALAESPELVNQKAET 114 (143)
T ss_dssp GGGTCTTHHHHSTTT
T ss_pred hhhhChHhhhCCCCC
Confidence 999999999999975
No 3
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=100.00 E-value=1.1e-36 Score=224.41 Aligned_cols=96 Identities=36% Similarity=0.631 Sum_probs=91.5
Q ss_pred cccCCcceeeCceeEEE------EeCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcce
Q 032928 32 SSVLDGLKYASSHEWVK------HEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISG 105 (130)
Q Consensus 32 ~~~p~~~~ys~~H~Wv~------~e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG 105 (130)
+++|++++|+++|+||+ .+++.++||||+|||+++|+|+||+||++|++|++||+|++|||+|++++|+||++|
T Consensus 8 ~~~P~~l~Yt~~HeWv~~~~~~~~e~~~~~VGITd~Aq~~lGdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG 87 (137)
T 3tzu_A 8 RKIPGDRSYTADHEWIDIAPGAATPDGPVRVGITSVAVEALGDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASG 87 (137)
T ss_dssp --CCTTSEECTTSEEESCCTTCCCCSSCEEEEECHHHHHHHCSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEE
T ss_pred ccCCccceeCCCCEEEEccCcccccCCEEEEeeCHHHHhhcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcce
Confidence 45699999999999999 678899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccCcccccCCCCc
Q 032928 106 EVIEVNTKLTETPGLVIFSVNS 127 (130)
Q Consensus 106 ~Vv~vN~~l~~~P~llN~~~~~ 127 (130)
+|+++|++|.++|++||++|.+
T Consensus 88 ~VvevN~~l~~~P~liN~dPy~ 109 (137)
T 3tzu_A 88 QIVEVNTAAVDDPATIATDPYG 109 (137)
T ss_dssp EEEEECHHHHHCTHHHHHCTTT
T ss_pred EEEEehhhhhcChhhhcCCCCc
Confidence 9999999999999999999974
No 4
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=100.00 E-value=9.5e-36 Score=216.53 Aligned_cols=91 Identities=48% Similarity=0.787 Sum_probs=89.1
Q ss_pred cceeeCceeEEEEeCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928 37 GLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE 116 (130)
Q Consensus 37 ~~~ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~ 116 (130)
+++|+++|+||+.+|+.++||||+|||+++|+|+||+||++|++|++||+|++|||+|++++|+||++|+|+++|.+|.+
T Consensus 2 ~l~Yt~~HeWv~~e~~~~~vGITd~Aq~~lGdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~ 81 (125)
T 3klr_A 2 VRKFTEKHEWVTTENGVGTVGISNFAQEALGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAE 81 (125)
T ss_dssp CCEECTTSEEEEEETTEEEEEECHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTT
T ss_pred CcEeCCCCEEEEEcCCEEEEeeCHHHHhhCCCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCc
Q 032928 117 TPGLVIFSVNS 127 (130)
Q Consensus 117 ~P~llN~~~~~ 127 (130)
+|++||++|.+
T Consensus 82 ~P~liN~dpy~ 92 (125)
T 3klr_A 82 NPGLVNKSCYE 92 (125)
T ss_dssp CTTHHHHCTTT
T ss_pred ChHhhcCCCCC
Confidence 99999999974
No 5
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=100.00 E-value=2.7e-34 Score=210.06 Aligned_cols=96 Identities=81% Similarity=1.155 Sum_probs=92.9
Q ss_pred cccCCcceeeCceeEEEEeCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEec
Q 032928 32 SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN 111 (130)
Q Consensus 32 ~~~p~~~~ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN 111 (130)
+++|++++|+++|+|++.+|+.++||||+|+|+++|+|++|++|++|++|++||+|++|||+|++.+|+||++|+|+++|
T Consensus 1 ~~~p~~l~Yt~~HeWv~~e~~~~~vGitd~a~~~lG~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn 80 (131)
T 1hpc_A 1 SNVLDGLKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVN 80 (131)
T ss_dssp CCCCTTCEECTTSEEEEEETTEEEEEECHHHHHHHCSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEEC
T ss_pred CCCccccEECCCCEEEEEcCCEEEEEEehhhcccCCCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEh
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccccCCCCc
Q 032928 112 TKLTETPGLVIFSVNS 127 (130)
Q Consensus 112 ~~l~~~P~llN~~~~~ 127 (130)
.++.++|++||++|.+
T Consensus 81 ~~l~~~P~lvn~dpy~ 96 (131)
T 1hpc_A 81 TGLTGKPGLINSSPYE 96 (131)
T ss_dssp THHHHCTTHHHHCTTT
T ss_pred hhhhcChhhhccCCCC
Confidence 9999999999999953
No 6
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=100.00 E-value=3.4e-34 Score=208.76 Aligned_cols=95 Identities=47% Similarity=0.742 Sum_probs=92.4
Q ss_pred ccCCcceeeCceeEEEEeCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecc
Q 032928 33 SVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNT 112 (130)
Q Consensus 33 ~~p~~~~ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~ 112 (130)
++|++++|+++|+|++.+++.++||||+|+|+++|+|+||++|++|++|++||+|++|||+|++++|+||++|+|+++|.
T Consensus 2 ~~p~~l~yt~~heWv~~~~~~~~vGit~~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~ 81 (128)
T 1onl_A 2 DIPKDRFYTKTHEWALPEGDTVLVGITDYAQDALGDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNL 81 (128)
T ss_dssp CCCSSSEECTTSEEEEEETTEEEEEECHHHHHHHCSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECT
T ss_pred CCCcccEECCCcEEEEecCCEEEEEeehHHhhcCCCceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhh
Confidence 47999999999999999989999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccccCCCCc
Q 032928 113 KLTETPGLVIFSVNS 127 (130)
Q Consensus 113 ~l~~~P~llN~~~~~ 127 (130)
++.++|++||++|.+
T Consensus 82 ~l~~~P~lvn~dpy~ 96 (128)
T 1onl_A 82 ALEKTPELVNQDPYG 96 (128)
T ss_dssp HHHHCTTHHHHCTTT
T ss_pred hhccChhhhccCCCC
Confidence 999999999999964
No 7
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=100.00 E-value=6.9e-34 Score=207.11 Aligned_cols=95 Identities=48% Similarity=0.808 Sum_probs=91.8
Q ss_pred ccCCcceeeCceeEEEEeCC-EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEec
Q 032928 33 SVLDGLKYASSHEWVKHEGS-VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN 111 (130)
Q Consensus 33 ~~p~~~~ys~~H~Wv~~e~~-~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN 111 (130)
++|++++|+++|+||+.+++ .++||||+|+|+++|+|+||++|++|++|++||+|++|||+|++++|+||++|+|+++|
T Consensus 2 ~~p~~l~yt~~heWv~~~~~g~~~vGitd~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN 81 (128)
T 3a7l_A 2 NVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVN 81 (128)
T ss_dssp CCCTTCEECTTSEEEEECTTSCEEEEECHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEEC
T ss_pred CCcccceEcCCcEEEEECCCcEEEEEEehHHhccCCceEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEh
Confidence 47999999999999999866 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccccCCCCc
Q 032928 112 TKLTETPGLVIFSVNS 127 (130)
Q Consensus 112 ~~l~~~P~llN~~~~~ 127 (130)
.+|.++|++||++|.+
T Consensus 82 ~~l~~~P~lvn~dpy~ 97 (128)
T 3a7l_A 82 DALSDSPELVNSEPYA 97 (128)
T ss_dssp GGGGTCTTHHHHCTTT
T ss_pred hhhccChHHhccCCCC
Confidence 9999999999999964
No 8
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=99.97 E-value=3e-31 Score=195.08 Aligned_cols=93 Identities=51% Similarity=0.808 Sum_probs=89.8
Q ss_pred CCcceeeCceeEEEEeCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccc
Q 032928 35 LDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (130)
Q Consensus 35 p~~~~ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l 114 (130)
.++++|+++|+|++.+++.++||||+|+|+++|+|++|++|++|++|++||+|++|||+|++.+|+||++|+|+++|.++
T Consensus 13 ~~~~~yt~~HeWv~~e~~~~~vGit~~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l 92 (136)
T 1zko_A 13 LKMKKYTKTHEWVSIEDKVATVGITNHAQEQLGDVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKL 92 (136)
T ss_dssp CEEEEECTTSEEEEEETTEEEEEECHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGG
T ss_pred cccceeCCCCEEEEecCCEEEEeeEhhhcccCCCcEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccCCCCc
Q 032928 115 TETPGLVIFSVNS 127 (130)
Q Consensus 115 ~~~P~llN~~~~~ 127 (130)
.++|++||++|.+
T Consensus 93 ~~~p~~Vn~dp~g 105 (136)
T 1zko_A 93 DTEPELINKDPEG 105 (136)
T ss_dssp GTCTTHHHHCTTT
T ss_pred ccCccCcccCCCC
Confidence 9999999999864
No 9
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=98.72 E-value=2.6e-09 Score=69.87 Aligned_cols=59 Identities=25% Similarity=0.367 Sum_probs=51.3
Q ss_pred eeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccccC
Q 032928 58 ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTET 117 (130)
Q Consensus 58 iTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~~ 117 (130)
+.+.+....|.|..+.+ ++|+.|++||+++.||++|+..+++||++|+|.++|.+..+.
T Consensus 7 ~p~~g~~~~G~i~~~~v-~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~ 65 (81)
T 1gjx_A 7 VPDIGGHENVDIIAVEV-NVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK 65 (81)
T ss_dssp CCCCSSCSSEEEEEECC-CSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCE
T ss_pred cCCCCCCCcEEEEEEEc-CCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCE
Confidence 44555567789999877 899999999999999999999999999999999999877543
No 10
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=98.72 E-value=2.2e-08 Score=66.52 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=47.5
Q ss_pred cchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
...+.-|.|..+.+ ++|+.|++||+++.||++|+..+++||++|+|.+++ ...
T Consensus 8 v~a~~~G~v~~~~v-~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G 60 (84)
T 2kcc_A 8 LRSPSAGKLTQYTV-EDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPG 60 (84)
T ss_dssp ECCSSSCCEEEESS-CTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTT
T ss_pred EECCCCEEEEEEEC-CCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCC
Confidence 45677899998865 899999999999999999999999999999999998 654
No 11
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=98.65 E-value=2.7e-08 Score=64.78 Aligned_cols=54 Identities=20% Similarity=0.285 Sum_probs=45.8
Q ss_pred chhccCCeeEEE------cCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 62 AQDHLGEVVFVE------LPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 62 a~~~lG~I~~v~------lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
..+..|.|..+. +.++|+.|++||.++.||++|+..+++||++|+|.++|.+..
T Consensus 8 ~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G 67 (80)
T 1bdo_A 8 RSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESG 67 (80)
T ss_dssp ECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTT
T ss_pred EcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCC
Confidence 456677776552 568999999999999999999999999999999999986543
No 12
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=98.63 E-value=4.7e-08 Score=65.07 Aligned_cols=60 Identities=17% Similarity=0.168 Sum_probs=47.6
Q ss_pred EEeeecchh-ccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928 56 VGITDHAQD-HLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE 116 (130)
Q Consensus 56 vGiTd~a~~-~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~ 116 (130)
+.+-+.+.. .-|.|..+. .++|+.|++||+++.||++|+..++.||.+|+|.+++.+..+
T Consensus 8 i~~P~lg~~~~~G~v~~~~-v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~ 68 (87)
T 3crk_C 8 VLLPALSPTMTMGTVQRWE-KKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGT 68 (87)
T ss_dssp EECCCSSTTCCEEEEEEEC-SCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTC
T ss_pred EeCCCCCCCCCcEEEEEEE-cCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCC
Confidence 444444443 236677664 489999999999999999999999999999999999866543
No 13
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=98.61 E-value=3e-08 Score=64.56 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=43.3
Q ss_pred cCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 66 LGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 66 lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
-|.|..+.+ ++|+.|++||+++.+|++|+..++.||++|+|.+++.+..
T Consensus 15 ~G~i~~~~v-~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G 63 (79)
T 1ghj_A 15 DGTVATWHK-KPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEG 63 (79)
T ss_dssp CEEECCCSS-CTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTT
T ss_pred CEEEEEEEc-CCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCc
Confidence 466776655 8899999999999999999999999999999999987654
No 14
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=98.61 E-value=4.7e-08 Score=63.53 Aligned_cols=56 Identities=29% Similarity=0.338 Sum_probs=46.6
Q ss_pred eeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 58 ITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 58 iTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
+.+.+.. -|.|..+.+ ++|+.|++||+++.||++|...+++||++|+|.+++.+..
T Consensus 7 ~p~~g~~-~G~v~~~~v-~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G 62 (80)
T 1qjo_A 7 VPDIGGD-EVEVTEVMV-KVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVG 62 (80)
T ss_dssp CCCCSSS-CEEEEECCC-CTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTT
T ss_pred CCCCCCC-CEEEEEEEc-CCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCC
Confidence 3344444 677777644 8999999999999999999999999999999999986654
No 15
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=98.59 E-value=1e-07 Score=60.45 Aligned_cols=52 Identities=25% Similarity=0.326 Sum_probs=44.9
Q ss_pred hhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 63 ~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
...-|.|..+.+ ++|+.|++||+++.||++|...+++||++|+|.+++.+..
T Consensus 4 a~~~G~v~~~~v-~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G 55 (72)
T 1z6h_A 4 IQMAGNLWKVHV-KAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEG 55 (72)
T ss_dssp CCSSEEEEEECC-CTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTT
T ss_pred CcccEEEEEEEc-CCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCC
Confidence 345677877754 7899999999999999999999999999999999986554
No 16
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=98.58 E-value=4e-08 Score=66.63 Aligned_cols=60 Identities=20% Similarity=0.147 Sum_probs=48.0
Q ss_pred EEEeeecchh-ccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 55 TVGITDHAQD-HLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 55 ~vGiTd~a~~-~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
.|.+.+.+.. .-|.|..+. .++|+.|++||+++.||++|+..+|.||++|+|.+++.+..
T Consensus 6 ~i~~P~lg~~~~~G~v~~~~-v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G 66 (93)
T 1k8m_A 6 QFKLSDIGEGIREVTVKEWY-VKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLD 66 (93)
T ss_dssp EEECCSSCTTSCCEEEEEEC-CCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSS
T ss_pred EEEcCCCCCCCCCEEEEEEE-cCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCC
Confidence 3444454443 346677664 48999999999999999999999999999999999987654
No 17
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=98.54 E-value=1.8e-07 Score=59.35 Aligned_cols=53 Identities=28% Similarity=0.392 Sum_probs=45.3
Q ss_pred cchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccc
Q 032928 61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (130)
Q Consensus 61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l 114 (130)
...+.-|.|..+.+ ++|+.|++||+++.+|++|...+++||++|.|.+++...
T Consensus 8 v~a~~~G~v~~~~v-~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~ 60 (74)
T 2d5d_A 8 VSAPMPGKVLRVLV-RVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKE 60 (74)
T ss_dssp EECSSCEEEEEECC-CTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCT
T ss_pred EecCCCEEEEEEEc-CCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCC
Confidence 34566677777654 799999999999999999999999999999999987544
No 18
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=98.54 E-value=3.6e-08 Score=63.76 Aligned_cols=49 Identities=22% Similarity=0.363 Sum_probs=43.5
Q ss_pred cCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 66 LGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 66 lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
-|.|..+.+ ++|+.|++||+++.||++|...+++||++|+|.++|.+..
T Consensus 15 ~G~v~~~~v-~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G 63 (77)
T 2l5t_A 15 EGEIVRWDV-KEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREG 63 (77)
T ss_dssp CEEEEECSC-CTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTT
T ss_pred cEEEEEEEe-CCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCc
Confidence 466777644 8999999999999999999999999999999999987664
No 19
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=98.52 E-value=2.8e-07 Score=59.19 Aligned_cols=52 Identities=29% Similarity=0.409 Sum_probs=45.3
Q ss_pred chhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccc
Q 032928 62 AQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (130)
Q Consensus 62 a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l 114 (130)
..+.-|.|..+.+ ++|+.|++||+++.||++|...+++||++|+|.++|...
T Consensus 12 ~a~~~G~v~~~~v-~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~ 63 (77)
T 1dcz_A 12 PAPLAGTVSKILV-KEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKE 63 (77)
T ss_dssp EBSSSCEEEEECC-CTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCT
T ss_pred ECCCCEEEEEEEc-CCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCC
Confidence 3556788887755 799999999999999999999999999999999988544
No 20
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=98.50 E-value=1.6e-07 Score=60.99 Aligned_cols=47 Identities=38% Similarity=0.487 Sum_probs=41.1
Q ss_pred CeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 68 EVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 68 ~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
.|..+.+ ++|+.|++||.++.||++|+..+++||++|+|.+++.+..
T Consensus 14 ~i~~~~v-~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G 60 (79)
T 1iyu_A 14 EVIELLV-KTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLG 60 (79)
T ss_dssp EEEEECC-CTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTT
T ss_pred EEEEEec-CCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCC
Confidence 4555544 8999999999999999999999999999999999986654
No 21
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=1.8e-07 Score=64.06 Aligned_cols=49 Identities=18% Similarity=0.235 Sum_probs=43.0
Q ss_pred cCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 66 LGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 66 lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
-|.|..+.. ++|+.|++||+++.||++|+..+|.||.+|+|.+++.+..
T Consensus 21 ~G~i~~~~v-~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G 69 (98)
T 2dnc_A 21 EGNIVKWLK-KEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEG 69 (98)
T ss_dssp EECEEEESS-CTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTT
T ss_pred cEEEEEEEc-CCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCC
Confidence 467777644 8999999999999999999999999999999999876554
No 22
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=98.42 E-value=1.7e-08 Score=66.90 Aligned_cols=53 Identities=26% Similarity=0.335 Sum_probs=46.6
Q ss_pred hhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928 63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE 116 (130)
Q Consensus 63 ~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~ 116 (130)
...+|.|..+.+ ++|+.|++||.++.||++|+..+|+||++|+|.++|.+..+
T Consensus 7 ~p~~G~v~~~~v-~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~ 59 (85)
T 2k7v_A 7 VPDIVEVTEVMV-KVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGD 59 (85)
T ss_dssp CCSCCCCCSCCC-SSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTC
T ss_pred CCCeEEEEEEEc-CCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCC
Confidence 445588888755 89999999999999999999999999999999999877653
No 23
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=98.42 E-value=2.1e-07 Score=64.89 Aligned_cols=50 Identities=20% Similarity=0.168 Sum_probs=42.6
Q ss_pred cCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928 66 LGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE 116 (130)
Q Consensus 66 lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~ 116 (130)
-|.|..+. .++|+.|++||+++.||++|+..+|.||.+|+|.+++.+..+
T Consensus 21 ~G~v~~~~-v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~ 70 (108)
T 2dne_A 21 AGTIARWE-KKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGT 70 (108)
T ss_dssp EEEEEECS-SCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTC
T ss_pred cEEEEEEE-cCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCC
Confidence 35566653 489999999999999999999999999999999998765543
No 24
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=98.41 E-value=3.2e-07 Score=66.18 Aligned_cols=49 Identities=20% Similarity=0.210 Sum_probs=43.0
Q ss_pred CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE 116 (130)
Q Consensus 67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~ 116 (130)
|.|..+. .++|+.|++||+++.||++|+..+|.||.+|+|.+++.+..+
T Consensus 42 G~V~~~~-V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd 90 (128)
T 1y8o_B 42 GTVQRWE-KKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGT 90 (128)
T ss_dssp EEEEEEC-SCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTC
T ss_pred EEEEEEe-cCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCC
Confidence 5677664 489999999999999999999999999999999998866653
No 25
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=98.39 E-value=6.8e-07 Score=78.97 Aligned_cols=53 Identities=23% Similarity=0.314 Sum_probs=46.9
Q ss_pred chhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 62 AQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 62 a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
..++.|.|+.+. .++|++|++||++++||+||+..+|.||.+|+|.+++.+..
T Consensus 616 ~ap~~G~v~~~~-v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G 668 (681)
T 3n6r_A 616 LCPMPGLIVKVD-VEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAG 668 (681)
T ss_dssp ECCSCEEEEEEC-CCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTT
T ss_pred ECCCcEEEEEEE-eCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCc
Confidence 456788888774 49999999999999999999999999999999999986654
No 26
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=5.7e-07 Score=61.27 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=44.7
Q ss_pred cchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccc
Q 032928 61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKL 114 (130)
Q Consensus 61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l 114 (130)
...+.-|.|..+.+ ++|+.|++||+++.||++|+..+++||++|+|. ++.+.
T Consensus 20 v~a~~~G~v~~~~v-~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~ 71 (100)
T 2dn8_A 20 LRSPSAGKLTQYTV-EDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRP 71 (100)
T ss_dssp EECSSCEEEEEESS-CTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCT
T ss_pred EeCCCCEEEEEEEc-CCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCC
Confidence 34567788887744 899999999999999999999999999999999 76543
No 27
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=98.36 E-value=1.2e-07 Score=64.21 Aligned_cols=54 Identities=24% Similarity=0.336 Sum_probs=26.2
Q ss_pred cchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
...+.-|.|..+.+ ++|+.|++||.++.||++|+..+++||++|+|.+++.+..
T Consensus 28 v~a~~~G~v~~~~v-~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G 81 (94)
T 2jku_A 28 LRSPMPGVVVAVSV-KPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAG 81 (94)
T ss_dssp CCCSSSCEEEEECC-CTTCCCCTTCCCEEEEC-----------------------
T ss_pred EECCCCEEEEEEEC-CCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCc
Confidence 34456788888755 7999999999999999999999999999999999886554
No 28
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=98.33 E-value=6.9e-07 Score=60.84 Aligned_cols=52 Identities=25% Similarity=0.309 Sum_probs=44.9
Q ss_pred hhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 63 ~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
...-|.|..+.+ ++|+.|++||+|+.||++|...+|+||++|.|.+++....
T Consensus 19 a~~~G~v~~~~v-~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G 70 (99)
T 2ejm_A 19 APMTGTIEKVFV-KAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREG 70 (99)
T ss_dssp CSSSEEEEEECC-CTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTT
T ss_pred cCCCEEEEEEEC-CCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCC
Confidence 455677777755 7999999999999999999999999999999999886543
No 29
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=98.28 E-value=2.6e-08 Score=65.16 Aligned_cols=49 Identities=16% Similarity=0.079 Sum_probs=42.1
Q ss_pred cCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 66 LGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 66 lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
-|.|..+. .++|+.|++||+++.||++|+..+++||++|+|.+++.+..
T Consensus 16 ~G~v~~~~-v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G 64 (80)
T 1pmr_A 16 DATVATWH-KKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEG 64 (80)
T ss_dssp CEECCBCC-CCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTT
T ss_pred cEEEEEEE-CCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCc
Confidence 35566553 48899999999999999999999999999999999886654
No 30
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=98.24 E-value=3.5e-07 Score=80.71 Aligned_cols=74 Identities=22% Similarity=0.342 Sum_probs=9.7
Q ss_pred CceeEEEEeCCEEEEEee--------------ecchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEE
Q 032928 42 SSHEWVKHEGSVATVGIT--------------DHAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEV 107 (130)
Q Consensus 42 ~~H~Wv~~e~~~~~vGiT--------------d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~V 107 (130)
.++.|+...+..+.+-.. ....++.|.|+.+.+ ++|++|++||++++||++|+..+|.||.+|+|
T Consensus 572 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~v~ap~~G~v~~~~v-~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v 650 (675)
T 3u9t_A 572 GRQLFLEWEGELLAIEAVDPIAEAEAAHAHQGGLSAPMNGSIVRVLV-EPGQTVEAGATLVVLEAMKMEHSIRAPHAGVV 650 (675)
T ss_dssp TTEEEEECSSSEEEEEECCHHHHHC-------------------------------------------------------
T ss_pred CCEEEEEECCeEEEEEEcCcccccccccCCCCeEECCCCEEEEEEEe-CCCCEEcCCCEEEEEEecceeEEEECCCCeEE
Confidence 345666665555555432 245568899998754 99999999999999999999999999999999
Q ss_pred EEecccccc
Q 032928 108 IEVNTKLTE 116 (130)
Q Consensus 108 v~vN~~l~~ 116 (130)
.+++.+..+
T Consensus 651 ~~i~~~~G~ 659 (675)
T 3u9t_A 651 KALYCSEGE 659 (675)
T ss_dssp ---------
T ss_pred EEEEeCCcC
Confidence 999766553
No 31
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=98.10 E-value=2.7e-06 Score=79.75 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=48.1
Q ss_pred cchhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
...++.|.|+.+. .++||+|++||+++.||++|+..+|.||++|+|.+++.+..
T Consensus 1170 v~ap~~G~v~~~~-v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G 1223 (1236)
T 3va7_A 1170 LYSEYTGRFWKPV-AAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNG 1223 (1236)
T ss_dssp EECSSCEEEEEES-SCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTT
T ss_pred EeCCCcEEEEEEE-cCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCc
Confidence 3467889999874 59999999999999999999999999999999999987654
No 32
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=98.09 E-value=6.2e-06 Score=76.79 Aligned_cols=53 Identities=21% Similarity=0.343 Sum_probs=46.5
Q ss_pred hhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928 63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE 116 (130)
Q Consensus 63 ~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~ 116 (130)
.++.|.|+.+. .++|++|++||++++||++|+..+|.||++|+|.+++.+..+
T Consensus 1082 ap~~G~v~~~~-v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~ 1134 (1150)
T 3hbl_A 1082 AQMPGSVTEVK-VSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGD 1134 (1150)
T ss_dssp CSSSEEEEEEC-CCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTC
T ss_pred cCceEEEEEEE-eCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCC
Confidence 45678888774 499999999999999999999999999999999999876553
No 33
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=97.79 E-value=2.9e-06 Score=71.53 Aligned_cols=49 Identities=27% Similarity=0.359 Sum_probs=0.0
Q ss_pred CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLTE 116 (130)
Q Consensus 67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~ 116 (130)
|+|+.+. .++||.|++||+++.||++|+..+|.||.+|+|.++..+..+
T Consensus 17 g~i~~w~-v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~ 65 (428)
T 3dva_I 17 GEIVKWF-VKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGT 65 (428)
T ss_dssp --------------------------------------------------
T ss_pred EEEEEEE-cCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCC
Confidence 5566553 499999999999999999999999999999999988766443
No 34
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=97.78 E-value=3.3e-06 Score=66.04 Aligned_cols=48 Identities=19% Similarity=0.269 Sum_probs=0.0
Q ss_pred CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
|.|..+. .++||.|++||+|+.||++|+..+|.||.+|+|.+++.+..
T Consensus 18 G~I~~w~-vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G 65 (229)
T 1zy8_K 18 GNIVKWL-KKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEG 65 (229)
T ss_dssp -------------------------------------------------
T ss_pred EEEEEEe-cCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCC
Confidence 5566664 48999999999999999999999999999999988765544
No 35
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=97.73 E-value=2.9e-05 Score=53.39 Aligned_cols=52 Identities=19% Similarity=0.373 Sum_probs=42.7
Q ss_pred hhccCCeeEEEcCCCCceEecCCeEEEEEEccee-----------------------------eeeecCcceEEEEeccc
Q 032928 63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKAT-----------------------------SDVNSPISGEVIEVNTK 113 (130)
Q Consensus 63 ~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~-----------------------------~~l~SPvsG~Vv~vN~~ 113 (130)
...-|.|..+.+ ++|+.|++||+|+.|++.++- ..|+||++|.|.+++..
T Consensus 6 a~~~G~V~~v~v-~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~ 84 (116)
T 2k32_A 6 PQVSGVIVNKLF-KAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVN 84 (116)
T ss_dssp CSSCEEEEEECS-CTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCC
T ss_pred CcCCEEEEEEEC-CCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECC
Confidence 455688887754 799999999999999987554 48999999999998765
Q ss_pred cc
Q 032928 114 LT 115 (130)
Q Consensus 114 l~ 115 (130)
..
T Consensus 85 ~G 86 (116)
T 2k32_A 85 IG 86 (116)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 36
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=97.59 E-value=1.6e-05 Score=71.02 Aligned_cols=52 Identities=27% Similarity=0.415 Sum_probs=44.6
Q ss_pred hhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 63 QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 63 ~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
.++-|.|..+.+ ++|++|++||++++||++|+..+|.||.+|+|.+++.+..
T Consensus 654 ap~~G~V~~v~V-~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G 705 (718)
T 3bg3_A 654 APMPGKVIDIKV-VAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKD 705 (718)
T ss_dssp CSSCEEEEEECS-CTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSE
T ss_pred CCCCeEEEEEEe-CCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCC
Confidence 345677777754 8999999999999999999999999999999998876544
No 37
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=97.54 E-value=3.2e-05 Score=72.07 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=48.7
Q ss_pred eEEEEeCCEEEEEeeecc---------------------hhccCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCc
Q 032928 45 EWVKHEGSVATVGITDHA---------------------QDHLGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPI 103 (130)
Q Consensus 45 ~Wv~~e~~~~~vGiTd~a---------------------~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPv 103 (130)
..+..+|..+.|.+.+-. .++-|.|..+.+ ++|+.|++||++++||++|+..+|.||.
T Consensus 1061 ~~~evnG~~~~v~v~~~~~~~~~~~~~~~a~~~~~~~v~ap~~G~v~~~~v-~~Gd~V~~G~~l~~iEamKme~~i~Ap~ 1139 (1165)
T 2qf7_A 1061 VFFELNGQPRRIKVPDRAHGATGAAVRRKAEPGNAAHVGAPMPGVISRVFV-SSGQAVNAGDVLVSIEAMKMETAIHAEK 1139 (1165)
T ss_dssp EEEEETTEEEEEEEECGGGTCCSCCCSCBCCTTCTTEEECSSCEEEEEECC-SSCCCC---CEEEEEEC---CEEEECCS
T ss_pred EEEEECCEEEEEEecCcccccccccccccCCCCCCceeeCCCCeEEEEEEc-CCcCEeCCCCEEEEEEcccceEEEEcCC
Confidence 456666667777765532 233455666644 8899999999999999999999999999
Q ss_pred ceEEEEeccccc
Q 032928 104 SGEVIEVNTKLT 115 (130)
Q Consensus 104 sG~Vv~vN~~l~ 115 (130)
+|+|.+++.+..
T Consensus 1140 ~G~V~~i~v~~G 1151 (1165)
T 2qf7_A 1140 DGTIAEVLVKAG 1151 (1165)
T ss_dssp SCCCCEECCCSS
T ss_pred CEEEEEEEeCCC
Confidence 999999987654
No 38
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=96.84 E-value=0.002 Score=48.47 Aligned_cols=49 Identities=35% Similarity=0.391 Sum_probs=41.5
Q ss_pred hccCCeeEEEcCCCCceEecCCeEEEEEEcce-eeeeecCcceEEEEeccc
Q 032928 64 DHLGEVVFVELPETGASVKQGGGFGVVESVKA-TSDVNSPISGEVIEVNTK 113 (130)
Q Consensus 64 ~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~-~~~l~SPvsG~Vv~vN~~ 113 (130)
+.-|-.+++ ...+|++|.+||.++.|.+.|. +.-++||++|+|+.+|+.
T Consensus 106 paeG~~V~~-i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~ 155 (169)
T 3d4r_A 106 PAEGYKVYP-IMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEI 155 (169)
T ss_dssp EECSSEEEE-CCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEE
T ss_pred EeCceEEEE-EcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEec
Confidence 444666655 4589999999999999999996 777999999999999876
No 39
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=96.18 E-value=0.008 Score=49.53 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=44.4
Q ss_pred ecchhccCCeeEEEcCCCCceEecCCeEEEEEEc----------------------------------------------
Q 032928 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVESV---------------------------------------------- 93 (130)
Q Consensus 60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~---------------------------------------------- 93 (130)
......-|.|..+.+.++|+.|++||+|+.|++.
T Consensus 123 ~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~ 202 (413)
T 3ne5_B 123 IVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQ 202 (413)
T ss_dssp EECCSSCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred EEecccCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3444567888888755899999999999999952
Q ss_pred --ceeeeeecCcceEEEEeccccc
Q 032928 94 --KATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 94 --K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
..-..|+||++|.|.++|....
T Consensus 203 ~~~~~~~I~AP~~G~V~~~~v~~G 226 (413)
T 3ne5_B 203 KIQTRFTLKAPIDGVITAFDLRAG 226 (413)
T ss_dssp SCCCEEEEECSSSEEEEECCCCTT
T ss_pred cccccEEEEcCCCeEEEEEEcCCC
Confidence 1245799999999999986654
No 40
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=96.07 E-value=0.012 Score=47.49 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=35.3
Q ss_pred cCCCCceEecCCeEEEEEEc----ceeeeeecCcceEEEEeccc
Q 032928 74 LPETGASVKQGGGFGVVESV----KATSDVNSPISGEVIEVNTK 113 (130)
Q Consensus 74 lp~vG~~v~~Gd~l~~IEs~----K~~~~l~SPvsG~Vv~vN~~ 113 (130)
..+.|+.|++||.++.|+.. +...+++||.+|.|+..+..
T Consensus 271 ~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~~~ 314 (331)
T 3na6_A 271 MIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHFP 314 (331)
T ss_dssp SSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEECS
T ss_pred cCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEeCC
Confidence 45899999999999999983 56899999999999998763
No 41
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=96.00 E-value=0.0057 Score=48.26 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=26.8
Q ss_pred ecchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
......-|.|..+.+ ++|+.|++||+|+.|++.
T Consensus 33 ~v~~~~~G~V~~v~v-~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 33 DVGAQVSGQLKTLSV-AIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp ECCCSSCEEEEEECC-CTTCEECTTCEEEEECCH
T ss_pred EEeccCCcEEEEEEe-CCCCEECCCCEEEEEChH
Confidence 334456788888865 799999999999999875
No 42
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=95.92 E-value=0.0093 Score=47.37 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=27.2
Q ss_pred ecchhccCCeeEEEcCCCCceEecCCeEEEEEEcc
Q 032928 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVESVK 94 (130)
Q Consensus 60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K 94 (130)
......-|.|..+.+ ++|+.|++||+|+.|++..
T Consensus 59 ~v~~~~~G~V~~v~v-~~G~~V~kGq~L~~ld~~~ 92 (359)
T 3lnn_A 59 KVLPPLAGRIVSLNK-QLGDEVKAGDVLFTIDSAD 92 (359)
T ss_dssp EECCSSCEEEEECCS-CTTCEECTTCEEEEEECSS
T ss_pred EEeccCCEEEEEEEc-CCCCEEcCCCEEEEEChHH
Confidence 344556788888755 8999999999999999753
No 43
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=95.91 E-value=0.0034 Score=48.25 Aligned_cols=32 Identities=9% Similarity=0.213 Sum_probs=26.5
Q ss_pred cchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928 61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
.....-|.|..+.+ ++|+.|++||+|+.|++.
T Consensus 25 v~a~~~G~V~~v~v-~~G~~V~kGq~L~~ld~~ 56 (277)
T 2f1m_A 25 VRPQVSGIILKRNF-KEGSDIEAGVSLYQIDPA 56 (277)
T ss_dssp ECCSSCEEEEEECS-CTTCEECTTSCSEEECCH
T ss_pred EEccccEEEEEEEc-CCCCEecCCCEEEEECcH
Confidence 34556788988865 899999999999999874
No 44
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=95.71 E-value=0.018 Score=47.28 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=37.0
Q ss_pred cCCCCceEecCCeEEEEEE------cceeeeeecCcceEEEEeccccc
Q 032928 74 LPETGASVKQGGGFGVVES------VKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 74 lp~vG~~v~~Gd~l~~IEs------~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
..+.|+.|++||.++.|.. .....+++||.+|.|...+..-.
T Consensus 304 ~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~~~p~ 351 (368)
T 3fmc_A 304 LGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHFASAS 351 (368)
T ss_dssp CSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEECSSSE
T ss_pred eCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEeCCCc
Confidence 4589999999999999998 56789999999999999986644
No 45
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=95.60 E-value=0.024 Score=46.01 Aligned_cols=38 Identities=18% Similarity=0.068 Sum_probs=34.6
Q ss_pred CCCCceEecCCeEEEEEE----cceeeeeecCcceEEEEecc
Q 032928 75 PETGASVKQGGGFGVVES----VKATSDVNSPISGEVIEVNT 112 (130)
Q Consensus 75 p~vG~~v~~Gd~l~~IEs----~K~~~~l~SPvsG~Vv~vN~ 112 (130)
.+.|+.|++||+|+.|++ ++...++.||.+|.|...+.
T Consensus 282 ~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~~ 323 (354)
T 3cdx_A 282 HYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGAG 323 (354)
T ss_dssp CCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEEC
T ss_pred CCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEeC
Confidence 468999999999999998 57889999999999999875
No 46
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=95.12 E-value=0.0089 Score=48.24 Aligned_cols=31 Identities=16% Similarity=0.227 Sum_probs=25.3
Q ss_pred chhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928 62 AQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 62 a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
....-|.|..+.+ ++|+.|++||+|+.|++.
T Consensus 47 ~a~v~G~V~~v~v-~~Gd~V~kGq~L~~ld~~ 77 (369)
T 1vf7_A 47 RPQVNGIILKRLF-KEGSDVKAGQQLYQIDPA 77 (369)
T ss_dssp CCSSCEEEEECCS-CSSEEECTTSEEEEECCH
T ss_pred EeeCceEEEEEEc-CCCCEEcCCCEEEEECcH
Confidence 3456788887754 899999999999999864
No 47
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=94.37 E-value=0.006 Score=48.56 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=26.4
Q ss_pred cchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928 61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
...+.-|.|..+.+ ++|+.|++||+|+.|++.
T Consensus 35 v~~~~~G~V~~v~v-~~G~~V~~Gq~L~~ld~~ 66 (369)
T 4dk0_A 35 VGAQVSGKITKLYV-KLGQQVKKGDLLAEIDST 66 (369)
T ss_dssp BCCCSCSBCCEECC-CTTSCCCSSCCCEECCCH
T ss_pred EecCCCcEEEEEEE-CCCCEECCCCEEEEEcCH
Confidence 33456688988865 799999999999999875
No 48
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=93.97 E-value=0.11 Score=41.61 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=35.0
Q ss_pred EcCCCCceEecCCeEEEEEE----cceeeeeecCcceEEEEecc
Q 032928 73 ELPETGASVKQGGGFGVVES----VKATSDVNSPISGEVIEVNT 112 (130)
Q Consensus 73 ~lp~vG~~v~~Gd~l~~IEs----~K~~~~l~SPvsG~Vv~vN~ 112 (130)
...+.|+.|++||.|+.+.. ++...+++||.+|.|...+.
T Consensus 270 ~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~~ 313 (332)
T 2qj8_A 270 PRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIRS 313 (332)
T ss_dssp ECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEEC
T ss_pred EeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEeC
Confidence 44578999999999999976 56788999999999999885
No 49
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=89.30 E-value=0.37 Score=36.22 Aligned_cols=42 Identities=24% Similarity=0.169 Sum_probs=35.0
Q ss_pred CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEeccc
Q 032928 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNTK 113 (130)
Q Consensus 67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~~ 113 (130)
|.+.+| +.|+.|++|+.|+ |.+....+|.|.++|+|.-.|-.
T Consensus 61 Ga~L~V---~dG~~V~~G~~la--ewDp~t~pIisE~~G~V~f~dii 102 (190)
T 2auk_A 61 GAVLAK---GDGEQVAGGETVA--NWDPHTMPVITEVSGFVRFTDMI 102 (190)
T ss_dssp TCEESS---CTTCEECTTCEEE--ECCSSEEEEECSSCEEEEEESCC
T ss_pred CCEEEe---cCCCEEcCCCEEE--EEcCcCCcEEeccccEEEEEecc
Confidence 444444 8999999999998 56899999999999999987743
No 50
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=80.64 E-value=1 Score=33.18 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=34.2
Q ss_pred cchhccCCeeEEEcCCCCceEec----CCeEEEEEEcceeeeeecCcceEEEEec
Q 032928 61 HAQDHLGEVVFVELPETGASVKQ----GGGFGVVESVKATSDVNSPISGEVIEVN 111 (130)
Q Consensus 61 ~a~~~lG~I~~v~lp~vG~~v~~----Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN 111 (130)
...+.-|+|..++ ++.|.+-. |+-++...+. ..++||++|+|..+-
T Consensus 15 i~aP~~G~vv~l~--~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~ 64 (161)
T 1f3z_A 15 IIAPLSGEIVNIE--DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIF 64 (161)
T ss_dssp EECSSCEEEEEGG--GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEEC
T ss_pred EEecCCeEEEEeE--ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEc
Confidence 4456678777543 66777666 7778777765 588999999999984
No 51
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=80.29 E-value=0.73 Score=33.65 Aligned_cols=46 Identities=22% Similarity=0.416 Sum_probs=32.7
Q ss_pred cchhccCCeeEEEcCCCCceEec----CCeEEEEEEcceeeeeecCcceEEEEec
Q 032928 61 HAQDHLGEVVFVELPETGASVKQ----GGGFGVVESVKATSDVNSPISGEVIEVN 111 (130)
Q Consensus 61 ~a~~~lG~I~~v~lp~vG~~v~~----Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN 111 (130)
...+.-|+|..+ -++.|.+-+ |+-++...+. ..++||++|+|..+-
T Consensus 10 i~aP~~G~vv~l--~~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~ 59 (154)
T 2gpr_A 10 VLAPCDGTIITL--DEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAF 59 (154)
T ss_dssp EECSSSEEEECG--GGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECC
T ss_pred EEecCCeEEEEe--eECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEc
Confidence 335566777644 466666666 7777777664 589999999999874
No 52
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=79.60 E-value=1.9 Score=32.82 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=29.8
Q ss_pred CCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecc
Q 032928 67 GEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNT 112 (130)
Q Consensus 67 G~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~ 112 (130)
|...+| +.|+.|++||.++ |.+ +|.|-++|+|++...
T Consensus 20 GA~L~V---~dG~~VkkG~~la--eWD----PIitE~~G~V~d~k~ 56 (193)
T 2xha_A 20 KAKLHV---NNGKDVNKGDLIA--EEP----PIYARRSGVIVDVKN 56 (193)
T ss_dssp TCEESC---CTTCEECTTCEEE--EEC----CEECSSCEEEEEEEE
T ss_pred CCEEEE---CCCCEEcCCCEEE--EeC----cEEEccCEEEEeecc
Confidence 444444 8999999999998 455 999999999976654
No 53
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=76.42 E-value=1.3 Score=32.65 Aligned_cols=45 Identities=27% Similarity=0.449 Sum_probs=31.1
Q ss_pred chhccCCeeEEEcCCCCceEec----CCeEEEEEEcceeeeeecCcceEEEEec
Q 032928 62 AQDHLGEVVFVELPETGASVKQ----GGGFGVVESVKATSDVNSPISGEVIEVN 111 (130)
Q Consensus 62 a~~~lG~I~~v~lp~vG~~v~~----Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN 111 (130)
..+.-|+|.. |-++.|.+-. |+-++...+ ...++||++|+|..+-
T Consensus 16 ~aP~~G~vv~--l~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~ 64 (162)
T 1ax3_A 16 VSPITGEIHP--ITDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVF 64 (162)
T ss_dssp CCCCSEEEEE--GGGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECC
T ss_pred EecCceEEEE--eEECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEc
Confidence 3455566654 4456666555 677776666 3578999999999884
No 54
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=71.75 E-value=2.7 Score=26.08 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=23.9
Q ss_pred cchhccCCeeEEEcCCCCceEecCCeEEEEE
Q 032928 61 HAQDHLGEVVFVELPETGASVKQGGGFGVVE 91 (130)
Q Consensus 61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IE 91 (130)
...+.-|.|..+.. ++|+.+..|++++.||
T Consensus 51 i~Ap~~G~v~~~~v-~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 51 IEADKSGTVKAILV-ESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EECSSCEEEEEECS-CTTCEECTTCEEEEEC
T ss_pred EECCCCEEEEEEEc-CCCCEECCCCEEEEEC
Confidence 34566788887754 8899999999999885
No 55
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=70.19 E-value=3.6 Score=29.91 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=26.6
Q ss_pred EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcc
Q 032928 53 VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVK 94 (130)
Q Consensus 53 ~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K 94 (130)
.+.||+.....+ |+=..+ ..++||+|++||+|+++...+
T Consensus 76 LiHiGidTv~l~--G~gF~~-~V~~Gd~V~~G~~L~~~d~~~ 114 (154)
T 2gpr_A 76 LLHIGLDTVSLD--GNGFES-FVTQDQEVNAGDKLVTVDLKS 114 (154)
T ss_dssp EEECSSSGGGGT--TCSEEE-CCCTTCEECTTCEEEEECHHH
T ss_pred EEEECcchhhcC--CCceEE-EEcCCCEEcCCCEEEEECHHH
Confidence 467787665544 432322 458999999999999986433
No 56
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=70.15 E-value=3.8 Score=25.18 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=24.6
Q ss_pred ecchhccCCeeEEEcCCCCceEecCCeEEEEE
Q 032928 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVE 91 (130)
Q Consensus 60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IE 91 (130)
....+.-|.|..+.. ++|+.+..|++++.|+
T Consensus 46 ~i~Ap~~G~v~~~~v-~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 46 KIPSPVRGKIVKILY-REGQVVPVGSTLLQID 76 (77)
T ss_dssp ECCCCCCEEEEEECC-CTTCEECSCSEEEEEE
T ss_pred EEECCCCEEEEEEEe-CCcCEECCCCEEEEEE
Confidence 344566788887755 7899999999999986
No 57
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=68.70 E-value=4.6 Score=29.56 Aligned_cols=37 Identities=24% Similarity=0.282 Sum_probs=25.8
Q ss_pred EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEE
Q 032928 53 VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVES 92 (130)
Q Consensus 53 ~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs 92 (130)
.+.||+.....+ |+=. --+.+.||+|++||+|+.+.-
T Consensus 81 LiHiGidTV~l~--G~gF-~~~V~~Gd~V~~G~~L~~~d~ 117 (161)
T 1f3z_A 81 FVHFGIDTVELK--GEGF-KRIAEEGQRVKVGDTVIEFDL 117 (161)
T ss_dssp EEECSBSGGGGT--TTTE-EECSCTTCEECTTCEEEEECH
T ss_pred EEEECccchhcC--CCcc-EEEEeCcCEECCCCEEEEECH
Confidence 467787665544 4322 224599999999999999864
No 58
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=68.37 E-value=2.1 Score=31.43 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=25.9
Q ss_pred EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEcc
Q 032928 53 VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESVK 94 (130)
Q Consensus 53 ~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K 94 (130)
.+.||+.....+ |+=. --+.+.||+|++||+|+.+.-.+
T Consensus 81 LiHIGidTV~l~--G~gF-~~~V~~Gd~V~~G~~L~~~d~~~ 119 (162)
T 1ax3_A 81 LIHFGIDTVSLK--GEGF-TSFVSEGDRVEPGQKLLEVDLDA 119 (162)
T ss_dssp EEECSSSTTTTT--TTTE-EESCCCCSEECSEEEEEEECHHH
T ss_pred EEEECccchhcC--CCcc-EEEEeCCCEEcCCCEEEEECHHH
Confidence 356776655443 4322 22459999999999999985433
No 59
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.10 E-value=1.5 Score=28.87 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=25.4
Q ss_pred CeEEEEEEcceeeeeecCcceEEEEecccccc
Q 032928 85 GGFGVVESVKATSDVNSPISGEVIEVNTKLTE 116 (130)
Q Consensus 85 d~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~~ 116 (130)
...+.+|..+....+.||++|+|.+++.+..+
T Consensus 6 g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd 37 (100)
T 2dn8_A 6 SGTCVFEKENDPTVLRSPSAGKLTQYTVEDGG 37 (100)
T ss_dssp CCCCCCCCCCCTTEEECSSCEEEEEESSCTTE
T ss_pred CEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcC
Confidence 34466778888889999999999999766543
No 60
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=67.88 E-value=5.6 Score=24.57 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=25.4
Q ss_pred cchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928 61 HAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
...+.-|.|..+.. ++|+.+..|++++.|+..
T Consensus 44 i~Ap~~G~v~~~~v-~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 44 VPSPKAGVVKSVSV-KLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp EECSSSSEEEEESC-CTTCEEETTSEEEEEECC
T ss_pred EECCCCEEEEEEEe-CCCCEECCCCEEEEEecC
Confidence 33566788887754 789999999999999754
No 61
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=64.80 E-value=3.3 Score=25.61 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=25.3
Q ss_pred ecchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
+...+.-|.|..+.. ++|+.+..|++++.|+..
T Consensus 45 ~i~Ap~~G~v~~~~v-~~G~~V~~G~~l~~i~~~ 77 (80)
T 1qjo_A 45 EVPAPFAGVVKELKV-NVGDKVKTGSLIMIFEVE 77 (80)
T ss_dssp EEEBSSCEEEEECCC-CTTCEECTTCCCEEEESC
T ss_pred EEeCCCCEEEEEEec-CCCCEECCCCEEEEEEcc
Confidence 344566677776654 789999999999999853
No 62
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=63.93 E-value=6.3 Score=29.65 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=27.6
Q ss_pred EEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928 53 VATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 53 ~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
.+.|||....+ -|+=.. -+.+.||+|++||+|+.+.-.
T Consensus 103 LIHIGiDTV~L--~G~gF~-~~V~~Gd~Vk~Gd~L~~fD~~ 140 (183)
T 3our_B 103 FVHFGIDTVEL--KGEGFT-RIAEEGQTVKAGDTVIEFDLA 140 (183)
T ss_dssp EEECSBSGGGG--TTTTEE-ECSCTTCEECTTCEEEEECHH
T ss_pred EEEeccccccc--CCccce-EEEeCcCEEcCCCEEEEECHH
Confidence 57888877644 355333 355999999999999998543
No 63
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=63.24 E-value=6.3 Score=32.23 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=30.3
Q ss_pred cCCeeEEEcCCCCceEecCCeEEEEEEcceeeeeecCcceEEEEecc
Q 032928 66 LGEVVFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNT 112 (130)
Q Consensus 66 lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~ 112 (130)
.|...+| +.|+.|++||.+++-. +|.|-++|+|++...
T Consensus 59 yga~l~v---~~g~~V~~g~~la~wd------pii~e~~G~v~~~~~ 96 (352)
T 2xhc_A 59 PKAKLHV---NNGKDVNKGDLIAEEP------PIYARRSGVIVDVKN 96 (352)
T ss_dssp TTCEESC---CTTCEECTTCEEEEEC------CEECSSCEEEEEEEE
T ss_pred CCCEEEe---cCCCEEcCCCEEEEec------cEEEecceEEEeecc
Confidence 3555545 8999999999988654 999999999976554
No 64
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=62.82 E-value=4.3 Score=24.76 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=24.0
Q ss_pred ecchhccCCeeEEEcCCCCceEecCCeEEEEE
Q 032928 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVE 91 (130)
Q Consensus 60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IE 91 (130)
....+.-|.|..+.. ..|+.+..|++++.||
T Consensus 47 ~i~Ap~~G~v~~~~~-~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 47 EINAPTDGKVEKVLV-KERDAVQGGQGLIKIG 77 (77)
T ss_dssp EEECSSSEEEEEECC-CTTCBCCBTSEEEEEC
T ss_pred EEECCCCEEEEEEec-CCcCEECCCCEEEEEC
Confidence 334566788877654 7899999999999885
No 65
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=62.48 E-value=5.7 Score=25.05 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=26.5
Q ss_pred ecchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
......-|.|..+.. .+|+.+..|+++++|+..
T Consensus 41 ~i~Ap~~G~V~~~~v-~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 41 EVPAPFAGVVKELKV-NVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp EEECSSCBCCCEECS-CTTCCBCTTSEEEEEECC
T ss_pred EEECCCCEEEEEEEe-CCCCEECCCCEEEEEEcC
Confidence 444567788887755 789999999999999864
No 66
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=61.76 E-value=5.8 Score=23.74 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=22.3
Q ss_pred chhccCCeeEEEcCCCCceEecCCeEEEEE
Q 032928 62 AQDHLGEVVFVELPETGASVKQGGGFGVVE 91 (130)
Q Consensus 62 a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IE 91 (130)
..+.-|.|..+.. ..|+.+..|++++.||
T Consensus 46 ~ap~~G~v~~~~~-~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 46 PSPRDGVVKRILV-KEGEAVDTGQPLIELG 74 (74)
T ss_dssp ECSSSEEEEEECC-CTTCEECTTCEEEEEC
T ss_pred eCCCCEEEEEEEc-CCcCEECCCCEEEEEC
Confidence 3455677776543 7899999999999885
No 67
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=61.51 E-value=3 Score=33.63 Aligned_cols=32 Identities=22% Similarity=0.156 Sum_probs=27.6
Q ss_pred CCCceEecCCeEEEEEEcceeeeeecCcceEEEEec
Q 032928 76 ETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN 111 (130)
Q Consensus 76 ~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN 111 (130)
+.|+.|++||+|+.+-. .++.+|.+|.++...
T Consensus 282 ~~g~~V~~G~~La~i~d----~~v~a~~dG~~i~~p 313 (350)
T 2bco_A 282 ENFTSFVHGEVFGHDGD----KPLMAKNDNEAIVFP 313 (350)
T ss_dssp CBTEECCTTCEEEEETT----EEEECSSSSCEEESC
T ss_pred cCCCEeCCCCEEEEECC----EEEEeCCCCEEEEec
Confidence 68999999999999943 789999999977654
No 68
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=60.98 E-value=4.7 Score=26.23 Aligned_cols=33 Identities=9% Similarity=-0.057 Sum_probs=25.4
Q ss_pred ecchhccCCeeEEEcCCCCceEecCCeEEEEEEc
Q 032928 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~ 93 (130)
+...+.-|.|..+.. +.|+.+..|++++.|+..
T Consensus 49 ~i~Ap~~G~V~~i~v-~~G~~V~~G~~l~~i~~~ 81 (93)
T 1k8m_A 49 TITSRYDGVIKKLYY-NLDDIAYVGKPLVDIETE 81 (93)
T ss_dssp ECCCSSCEEEEEECC-CSSCEECTTSEEEEEECS
T ss_pred EEEcCCCEEEEEEEc-CCCCEeCCCCEEEEEecC
Confidence 344566788877644 779999999999999853
No 69
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=59.63 E-value=7.4 Score=23.25 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=23.9
Q ss_pred cchhccCCeeEEEcCCCCceEecCCeEEEEEE
Q 032928 61 HAQDHLGEVVFVELPETGASVKQGGGFGVVES 92 (130)
Q Consensus 61 ~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs 92 (130)
...+.-|.|..+. .++|+.+.+|++++.|+.
T Consensus 39 i~ap~~G~v~~~~-v~~G~~V~~G~~l~~i~~ 69 (72)
T 1z6h_A 39 IVADRSGIVKEVK-KKEGDFVNEGDVLLELSN 69 (72)
T ss_dssp EECSSCEEEEEES-SCTTCEECTTCEEEEEGG
T ss_pred EECCCCcEEEEEe-cCCCCEECCCCEEEEEeC
Confidence 3356678777664 488999999999999854
No 70
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=56.73 E-value=7 Score=24.10 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=32.9
Q ss_pred eeeCceeEEEEeCCEEEEEeeecchhccCCeeEEEcCCCCceEecCCeEEEEEE
Q 032928 39 KYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGASVKQGGGFGVVES 92 (130)
Q Consensus 39 ~ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs 92 (130)
....+......+..... ++...+.-|.|..+.. ++|+.+..|++++.|+.
T Consensus 28 ~V~~G~~l~~ie~~k~~---~~i~Ap~~G~v~~~~v-~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 28 AVKRDELIVDIETDKVV---MEVLAEADGVIAEIVK-NEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EECSSCEEEEEECSSCE---EEEECSSCEEEEEESS-CTTCEECTTCEEEEECC
T ss_pred EECCCCEEEEEEcccee---EEEEcCCCEEEEEEEc-CCcCEECCCCEEEEEec
Confidence 44455555555543332 2333566788887644 78999999999999864
No 71
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.39 E-value=7.1 Score=25.66 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=24.9
Q ss_pred cchhccCCeeEEEcCCCCceE-ecCCeEEEEEEcc
Q 032928 61 HAQDHLGEVVFVELPETGASV-KQGGGFGVVESVK 94 (130)
Q Consensus 61 ~a~~~lG~I~~v~lp~vG~~v-~~Gd~l~~IEs~K 94 (130)
.....-|.|..+ +.+.|+.+ ..|++|+.|+...
T Consensus 53 i~Ap~~G~v~~i-~v~~G~~Vv~~G~~l~~i~~~~ 86 (98)
T 2dnc_A 53 LDASDDGILAKI-VVEEGSKNIRLGSLIGLIVEEG 86 (98)
T ss_dssp EECSSCEEEEEC-SSCTTCCCEESSCEEEEEECTT
T ss_pred EeCCCCEEEEEE-EeCCCCEEcCCCCEEEEEecCC
Confidence 334556777765 44789998 9999999998653
No 72
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.00A {Chromobacterium violaceum} SCOP: c.56.5.7
Probab=53.20 E-value=1.8 Score=34.76 Aligned_cols=42 Identities=10% Similarity=-0.027 Sum_probs=30.3
Q ss_pred CCCceEecCCeEEEEEEc-----ceeeeeecCcceEEEEeccccccC
Q 032928 76 ETGASVKQGGGFGVVESV-----KATSDVNSPISGEVIEVNTKLTET 117 (130)
Q Consensus 76 ~vG~~v~~Gd~l~~IEs~-----K~~~~l~SPvsG~Vv~vN~~l~~~ 117 (130)
+.|+.|++||+|+.+-.. .....+.+|.+|.|...+....=.
T Consensus 280 ~~g~~V~~G~~La~i~d~~~~~g~~~~~i~aP~~Gvv~g~r~~p~V~ 326 (341)
T 1yw4_A 280 ENFTLLPDGMLIAEDGAVRYQATGGEERILFPNPAVKPGLRAGIVVE 326 (341)
T ss_dssp CBTEECCSSCCCC--------CCSSCCEEESCCTTCCSSSEEEEEEE
T ss_pred CCcCEeCCCCEEEEECCCceEeCCCceEEEeCCCCceeeecccceEE
Confidence 779999999999998654 346679999999999887655433
No 73
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=49.05 E-value=14 Score=23.24 Aligned_cols=50 Identities=14% Similarity=0.124 Sum_probs=31.6
Q ss_pred eeCceeEEEEeCCEEEEEeeecchhccCCeeEEEcCCCCc-eEecCCeEEEEEEc
Q 032928 40 YASSHEWVKHEGSVATVGITDHAQDHLGEVVFVELPETGA-SVKQGGGFGVVESV 93 (130)
Q Consensus 40 ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~lp~vG~-~v~~Gd~l~~IEs~ 93 (130)
...+......+..... ++.....-|.|..+. .+.|+ .+..|++++.|+..
T Consensus 33 V~~G~~l~~ie~~k~~---~~i~Ap~~G~v~~~~-v~~G~~~V~~G~~l~~i~~~ 83 (87)
T 3crk_C 33 LSEGDLLAEIETDXAT---IGFEVQEEGYLAKIL-VPEGTRDVPLGTPLCIIVEK 83 (87)
T ss_dssp ECTTCEEEEEECSSCE---EEEECCSCEEEEEES-SCTTCCCEETTCEEEEEESS
T ss_pred EcCCCEEEEEECCccc---ceeecCcCcEEEEEE-ECCCCeEECCCCEEEEEEcc
Confidence 3444444444433222 233355678887764 47899 89999999999854
No 74
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=48.39 E-value=9.7 Score=24.02 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=25.4
Q ss_pred ecchhccCCeeEEEcCCCCceEecCCeEEEEEEcc
Q 032928 60 DHAQDHLGEVVFVELPETGASVKQGGGFGVVESVK 94 (130)
Q Consensus 60 d~a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IEs~K 94 (130)
+...+.-|.|..+. ..|+.+..|++|+.|+...
T Consensus 44 ~i~Ap~~G~v~~~~--~~G~~V~~G~~l~~i~~~~ 76 (84)
T 2kcc_A 44 TLNVQERGRVKYIK--RPGAVLEAGCVVARLELDD 76 (84)
T ss_dssp EEECSSSEEEEECS--CTTCCCCTTCCCEEEECSC
T ss_pred EEECCCCEEEEEEc--CCCCEECCCCEEEEEeCCC
Confidence 34456678887664 8899999999999997543
No 75
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=45.51 E-value=18 Score=27.16 Aligned_cols=45 Identities=18% Similarity=0.359 Sum_probs=26.0
Q ss_pred hhccCCeeEEEcCCCCceEec----CCeEEEEEEcceeeeeecCcceEEEEecc
Q 032928 63 QDHLGEVVFVELPETGASVKQ----GGGFGVVESVKATSDVNSPISGEVIEVNT 112 (130)
Q Consensus 63 ~~~lG~I~~v~lp~vG~~v~~----Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN~ 112 (130)
.+.-|++. .|-++.|.+-+ |+=++..=+. ..++||++|+|..+-.
T Consensus 39 aPv~G~vi--~L~eV~D~vFs~~~mGdG~AI~P~~---g~v~AP~dG~V~~vfp 87 (183)
T 3our_B 39 APLSGEIV--NIEDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVNGTIGKIFE 87 (183)
T ss_dssp CSSCEEEE--EGGGSSCHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECT
T ss_pred eecceEEE--EchhCcChHhcccCccCeEEEEcCC---CEEEeCCCeEEEEECC
Confidence 44555554 34444444432 4444444322 3799999999998853
No 76
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=42.70 E-value=8.9 Score=26.81 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=24.1
Q ss_pred hhccCCeeEEEcCCCCc-eEecCCeEEEEEEcc
Q 032928 63 QDHLGEVVFVELPETGA-SVKQGGGFGVVESVK 94 (130)
Q Consensus 63 ~~~lG~I~~v~lp~vG~-~v~~Gd~l~~IEs~K 94 (130)
...-|.|..+ +.+.|+ .|..|++|+.|+...
T Consensus 75 Ap~~G~V~~i-~v~~Gd~~V~~G~~L~~i~~~~ 106 (128)
T 1y8o_B 75 VQEEGYLAKI-LVPEGTRDVPLGTPLCIIVEKE 106 (128)
T ss_dssp CCSCEEEEEE-SSCTTCCSEETTCEEEEEESSG
T ss_pred CCCCeEEEEE-EeCCCCeeecCCCEEEEEecCc
Confidence 4556777776 447898 899999999998643
No 77
>1m1f_A KID toxin protein; toxin-antitoxin, plasmid maintenance, post segregational killing, DNA replication, mutational analysis, CCDB; 1.40A {Escherichia coli} SCOP: b.34.6.2 PDB: 2c06_A
Probab=40.00 E-value=11 Score=24.72 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=29.2
Q ss_pred cCCeeEEEc-CCCCceEecCCeEEEEEEcce----eeeeecCcceE
Q 032928 66 LGEVVFVEL-PETGASVKQGGGFGVVESVKA----TSDVNSPISGE 106 (130)
Q Consensus 66 lG~I~~v~l-p~vG~~v~~Gd~l~~IEs~K~----~~~l~SPvsG~ 106 (130)
-|+|+++++ |..|.+..+-.|+..|..+.. -.-+.+|++..
T Consensus 3 rGdI~~v~~~p~~g~E~~k~RP~lVvs~~~~n~~~~~viv~piTs~ 48 (110)
T 1m1f_A 3 RGEIWLVSLDPTAGHEQQGTRPVLIVTPAAFNRVTRLPVVVPVTSG 48 (110)
T ss_dssp TTEEEEEECCSCCTTSCCSEEEEEECSCHHHHHHHSCCEEEEEEC-
T ss_pred ccEEEEEECCCCCCcccCCcccEEEEecccccccCCeEEEEEeccc
Confidence 499999999 888988888889988865421 22355666644
No 78
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=39.01 E-value=9.8 Score=28.79 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=24.2
Q ss_pred CCCceEecCCeEEEEEEcceeeeeecCcceEEEEe
Q 032928 76 ETGASVKQGGGFGVVESVKATSDVNSPISGEVIEV 110 (130)
Q Consensus 76 ~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~v 110 (130)
+.|++|++||.|+ --..+.|.++|+|.--
T Consensus 86 ~dG~~V~~GdvLA------Kd~AIiaEIdG~V~fg 114 (193)
T 2xha_A 86 RVGTKVKQGLPLS------KNEEYICELDGKIVEI 114 (193)
T ss_dssp CTTCEECTTSBSS------TTSCSBCCSSEEEEEE
T ss_pred CCCCEEcCCCEEe------cCCeEEEccceEEEEC
Confidence 7799999999999 3356789999998764
No 79
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=37.77 E-value=13 Score=30.41 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=24.6
Q ss_pred CCCceEecCCeEEEEEEcceeeeeecCcceEEEEe
Q 032928 76 ETGASVKQGGGFGVVESVKATSDVNSPISGEVIEV 110 (130)
Q Consensus 76 ~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~v 110 (130)
+.|++|++||.|+ --..+.|.++|+|.--
T Consensus 126 ~~g~~v~~G~vla------k~~aiiaeidG~V~fg 154 (352)
T 2xhc_A 126 RVGTKVKQGLPLS------KNEEYICELDGKIVEI 154 (352)
T ss_dssp CTTCEECTTCBSB------SSSSCBCCSCEEEEEE
T ss_pred CCCCEEccCcEEe------cCceEEeccceEEEEC
Confidence 6799999999999 4467899999999843
No 80
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=37.11 E-value=29 Score=25.84 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=22.8
Q ss_pred eEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 86 GFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 86 ~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
.-|+|+.. ....|.+|++|+|.+++.+..
T Consensus 13 ~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G 41 (277)
T 2f1m_A 13 LPGRTSAY-RIAEVRPQVSGIILKRNFKEG 41 (277)
T ss_dssp EEEEEECS-EEEEECCSSCEEEEEECSCTT
T ss_pred EEEEEEee-eEEEEEccccEEEEEEEcCCC
Confidence 45778765 567899999999999986544
No 81
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=34.62 E-value=27 Score=29.26 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.0
Q ss_pred cCCCCceEecCCeEEEEEEcce
Q 032928 74 LPETGASVKQGGGFGVVESVKA 95 (130)
Q Consensus 74 lp~vG~~v~~Gd~l~~IEs~K~ 95 (130)
..++|++|++||++++|-+.+.
T Consensus 381 ~~k~g~~v~~g~~l~~i~~~~~ 402 (433)
T 1brw_A 381 HKKIGDRVQKGEALATIHSNRP 402 (433)
T ss_dssp SCCTTCEECTTCEEEEEEESSS
T ss_pred eccCCCEECCCCeEEEEEcCCc
Confidence 4699999999999999987643
No 82
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=34.00 E-value=30 Score=26.83 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=24.9
Q ss_pred CeEEEEEEc-ceeeeeecCcceEEEEeccccc
Q 032928 85 GGFGVVESV-KATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 85 d~l~~IEs~-K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
..-|.|++. .....|.+|++|+|.+++.+..
T Consensus 45 ~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G 76 (359)
T 3lnn_A 45 NLPAMIEADPAKLVKVLPPLAGRIVSLNKQLG 76 (359)
T ss_dssp EEEEEEECCSSSEEEECCSSCEEEEECCSCTT
T ss_pred EEEEEEEECCCcEEEEeccCCEEEEEEEcCCC
Confidence 446788874 6788999999999999986543
No 83
>1ub4_A MAZF protein; toxin, antidote, programmed cell death, post-segregation, AD module, structural genomics, PSI; 1.70A {Escherichia coli} SCOP: b.34.6.2 PDB: 3nfc_A
Probab=33.86 E-value=14 Score=24.34 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=23.8
Q ss_pred hccCCeeEEEc-CCCCceEecCCeEEEEEEcce----eeeeecCcceE
Q 032928 64 DHLGEVVFVEL-PETGASVKQGGGFGVVESVKA----TSDVNSPISGE 106 (130)
Q Consensus 64 ~~lG~I~~v~l-p~vG~~v~~Gd~l~~IEs~K~----~~~l~SPvsG~ 106 (130)
..-|+|+.+++ |..|.+..+-.|+..|..+.. -.-+.+|++.+
T Consensus 6 ~~rGdI~~v~~~p~~g~E~~k~RP~lVvs~~~~n~~~~~viv~piTs~ 53 (110)
T 1ub4_A 6 PDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQ 53 (110)
T ss_dssp CCTTEEEEEECCC-------CEEEEEECSCHHHHHHHSCEEEEEEESC
T ss_pred cccCeEEEEECCCCCCcccCCcCcEEEEecCcccccCCeEEEEEeecc
Confidence 34699999999 778988888888888865422 12345555543
No 84
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=33.41 E-value=28 Score=29.09 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=18.6
Q ss_pred cCCCCceEecCCeEEEEEEcc
Q 032928 74 LPETGASVKQGGGFGVVESVK 94 (130)
Q Consensus 74 lp~vG~~v~~Gd~l~~IEs~K 94 (130)
..++|++|++||++++|-+.+
T Consensus 373 ~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 373 LKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp SCCTTCEECTTSEEEEEEECS
T ss_pred eccCCCEeCCCCeEEEEEeCC
Confidence 468999999999999998764
No 85
>1ne8_A Conserved hypothetical protein YDCE; structural genomics, NEW YORK SGX research center for structural genomics, PSI; HET: 1PG; 2.10A {Bacillus subtilis} SCOP: b.34.6.2
Probab=31.68 E-value=18 Score=23.80 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=23.3
Q ss_pred ccCCeeEEEc-CCCCceEecCCeEEEEEEc
Q 032928 65 HLGEVVFVEL-PETGASVKQGGGFGVVESV 93 (130)
Q Consensus 65 ~lG~I~~v~l-p~vG~~v~~Gd~l~~IEs~ 93 (130)
.-|+|+.+++ |..|.+..+-.|+..|..+
T Consensus 5 ~rGdI~~v~~~p~~g~e~~k~RP~lVvs~~ 34 (117)
T 1ne8_A 5 KRGDVYFADLSPVVGSEQGGVRPVLVIQND 34 (117)
T ss_dssp CTTEEEEEECCSCCTTSCCSEEEEEECSCH
T ss_pred eeceEEEEECCCCCCCccCCceEEEEEeeC
Confidence 4599999999 8888887777788888654
No 86
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=31.55 E-value=28 Score=25.55 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=15.9
Q ss_pred CCCCceEecCCeEEEEEE
Q 032928 75 PETGASVKQGGGFGVVES 92 (130)
Q Consensus 75 p~vG~~v~~Gd~l~~IEs 92 (130)
.++|++|++||.|+.+-.
T Consensus 87 V~~G~~V~~Gq~IG~vG~ 104 (182)
T 3it5_A 87 VSNGQQVSADTKLGVYAG 104 (182)
T ss_dssp CCTTCEECTTCEEEEECS
T ss_pred cCCCCEEcCCCEEEeecC
Confidence 479999999999999854
No 87
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=30.94 E-value=1.1e+02 Score=26.68 Aligned_cols=36 Identities=31% Similarity=0.436 Sum_probs=28.0
Q ss_pred CCCCceEecCCeEEEEEEcceeeeeecC--cceEEEEe
Q 032928 75 PETGASVKQGGGFGVVESVKATSDVNSP--ISGEVIEV 110 (130)
Q Consensus 75 p~vG~~v~~Gd~l~~IEs~K~~~~l~SP--vsG~Vv~v 110 (130)
.++|++|..||.++++.-...++.+..| +.|+|+++
T Consensus 123 ~~~g~~v~~G~i~g~v~e~~~ih~i~~pp~~~g~v~~i 160 (578)
T 3gqb_A 123 VKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVKEV 160 (578)
T ss_dssp CCTTCEECTTCEEEEEEETTEEEEEECCTTCCEEEEEE
T ss_pred cccCccccccceeeeecccccceecccCCCcCceeEEe
Confidence 4789999999999999765556665433 68888887
No 88
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=30.80 E-value=27 Score=29.37 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=17.8
Q ss_pred cCCCCceEecCCeEEEEEEcc
Q 032928 74 LPETGASVKQGGGFGVVESVK 94 (130)
Q Consensus 74 lp~vG~~v~~Gd~l~~IEs~K 94 (130)
..++|++|++||++++|-+.+
T Consensus 384 ~~~~G~~V~~g~~l~~i~~~~ 404 (436)
T 3h5q_A 384 NKKIGDKVEEGESLLTIHSNR 404 (436)
T ss_dssp SCCTTCEECTTSEEEEEEESS
T ss_pred ecCCcCEeCCCCeEEEEeCCh
Confidence 468999999999999997433
No 89
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=30.26 E-value=91 Score=27.34 Aligned_cols=36 Identities=31% Similarity=0.488 Sum_probs=27.0
Q ss_pred CCCCceEecCCeEEEEEEccee-eeeecC--cceEEEEe
Q 032928 75 PETGASVKQGGGFGVVESVKAT-SDVNSP--ISGEVIEV 110 (130)
Q Consensus 75 p~vG~~v~~Gd~l~~IEs~K~~-~~l~SP--vsG~Vv~v 110 (130)
.++|+.|..||.++++.-...+ +.+..| +.|+|..+
T Consensus 131 ~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i 169 (600)
T 3vr4_A 131 IEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKI 169 (600)
T ss_dssp SCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE
T ss_pred cccCCEecCCceEEEEecCCceeeeeecCCCCCceEEEe
Confidence 4789999999999999655443 555444 57888887
No 90
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=30.20 E-value=35 Score=28.97 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=19.0
Q ss_pred EcCCCCceEecCCeEEEEEEcc
Q 032928 73 ELPETGASVKQGGGFGVVESVK 94 (130)
Q Consensus 73 ~lp~vG~~v~~Gd~l~~IEs~K 94 (130)
-..++|++|++||++++|-+.+
T Consensus 415 l~~k~G~~V~~g~~l~~i~~~~ 436 (474)
T 1uou_A 415 LLVDVGQRLRRGTPWLRVHRDG 436 (474)
T ss_dssp ECSCTTCEECTTCEEEEEEESS
T ss_pred EEccCCCEECCCCeEEEEEcCC
Confidence 3579999999999999998764
No 91
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=27.08 E-value=28 Score=29.24 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=19.4
Q ss_pred EE-cCCCCceEecCCeEEEEEEcc
Q 032928 72 VE-LPETGASVKQGGGFGVVESVK 94 (130)
Q Consensus 72 v~-lp~vG~~v~~Gd~l~~IEs~K 94 (130)
|. ..++|++|++||++++|-+.+
T Consensus 383 i~~~~k~g~~v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 383 FTDMARLGDQVDGQRPLAVIHAKD 406 (440)
T ss_dssp EESCCCTTCEEBTTBCSEEEEESS
T ss_pred eeEeccCCCEECCCCeEEEEecCC
Confidence 44 368999999999999998764
No 92
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=26.22 E-value=1.2e+02 Score=26.65 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=26.2
Q ss_pred cCCCCceEecCCeEEEEEEcce-eeeeecC--cceEEEEe
Q 032928 74 LPETGASVKQGGGFGVVESVKA-TSDVNSP--ISGEVIEV 110 (130)
Q Consensus 74 lp~vG~~v~~Gd~l~~IEs~K~-~~~l~SP--vsG~Vv~v 110 (130)
..++|++|..||.+++|.-... .+.+.-| +.|+|..+
T Consensus 123 ~~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g~v~~i 162 (588)
T 3mfy_A 123 KAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEI 162 (588)
T ss_dssp CCCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE
T ss_pred ccccCcccccCceEEEEecccceeeeeecCCCCCceEEEe
Confidence 3478999999999999864332 3444323 67888777
No 93
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=25.60 E-value=59 Score=24.86 Aligned_cols=29 Identities=17% Similarity=0.412 Sum_probs=22.8
Q ss_pred eEEEEEEcceeeeeecCcceEEEEeccccc
Q 032928 86 GFGVVESVKATSDVNSPISGEVIEVNTKLT 115 (130)
Q Consensus 86 ~l~~IEs~K~~~~l~SPvsG~Vv~vN~~l~ 115 (130)
.-|+|+.. ....|.+|++|+|.+++.+..
T Consensus 22 ~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G 50 (341)
T 3fpp_A 22 ATGKLDAL-RKVDVGAQVSGQLKTLSVAIG 50 (341)
T ss_dssp EEEEEEES-SEEECCCSSCEEEEEECCCTT
T ss_pred EEEEEEee-EEEEEeccCCcEEEEEEeCCC
Confidence 46778776 456899999999999985543
No 94
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=23.96 E-value=70 Score=25.12 Aligned_cols=37 Identities=22% Similarity=0.388 Sum_probs=25.7
Q ss_pred EEEEeeecchh---ccCCeeEEE-cCCCCceEecCCeEEEEEEc
Q 032928 54 ATVGITDHAQD---HLGEVVFVE-LPETGASVKQGGGFGVVESV 93 (130)
Q Consensus 54 ~~vGiTd~a~~---~lG~I~~v~-lp~vG~~v~~Gd~l~~IEs~ 93 (130)
+.-|+ +++.. .+| ..++ ..+.|+.+++|+++++||+.
T Consensus 55 v~aG~-~~~~~~f~~~~--~~v~~~~~dG~~v~~g~~v~~i~G~ 95 (285)
T 1o4u_A 55 VASGI-EVSRMFLEKMG--LLSKFNVEDGEYLEGTGVIGEIEGN 95 (285)
T ss_dssp ECCSH-HHHHHHHHHTT--CEEEESCCTTCEEESCEEEEEEEEE
T ss_pred EEEcH-HHHHHHHHHcC--CEEEEEcCCCCCcCCCCEEEEEEEc
Confidence 33475 44443 345 3454 56899999999999999874
No 95
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=23.77 E-value=30 Score=26.73 Aligned_cols=19 Identities=32% Similarity=0.275 Sum_probs=16.2
Q ss_pred CCCCceEecCCeEEEEEEc
Q 032928 75 PETGASVKQGGGFGVVESV 93 (130)
Q Consensus 75 p~vG~~v~~Gd~l~~IEs~ 93 (130)
.++|+.|++||.|+.+-..
T Consensus 137 Vk~Gd~V~~Gq~IG~vG~t 155 (245)
T 3tuf_B 137 VEQGDKVKQNQVIGKSGKN 155 (245)
T ss_dssp CCTTCEECTTCEEEECBCC
T ss_pred cCCCCEECCCCEEEEeCCc
Confidence 4789999999999998543
No 96
>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ...
Probab=22.18 E-value=1.7e+02 Score=19.59 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=13.5
Q ss_pred CCeeEEE-cC-CCCceEecCCeEEE
Q 032928 67 GEVVFVE-LP-ETGASVKQGGGFGV 89 (130)
Q Consensus 67 G~I~~v~-lp-~vG~~v~~Gd~l~~ 89 (130)
|++.+|+ |+ ++|+.|.=++.++.
T Consensus 17 Gd~i~vekl~~~~G~~v~~~~VLlv 41 (103)
T 3r8s_R 17 GQTVRLEKLDIATGETVEFAEVLMI 41 (103)
T ss_dssp TCEEEESCCCSCTTCEEEECCEEEE
T ss_pred CCEEEECCcCCCCCCEEEEeEEEEE
Confidence 5555554 32 55777777666655
No 97
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=21.93 E-value=49 Score=28.89 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=23.0
Q ss_pred chhccCCeeEEEcCCCCceEecCCeEEEEE
Q 032928 62 AQDHLGEVVFVELPETGASVKQGGGFGVVE 91 (130)
Q Consensus 62 a~~~lG~I~~v~lp~vG~~v~~Gd~l~~IE 91 (130)
..+.-|.|..+.. ++|+.|+.|++|+.||
T Consensus 653 ~ap~~G~v~~i~~-~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 653 RAEKKGVVAKINA-SAGNSLAVDDVIMEFE 681 (681)
T ss_dssp ECSSSEEEEEECC-CTTCEECTTCEEEEEC
T ss_pred ECCCCeEEEEEEe-CCcCEeCCCCEEEEEC
Confidence 3455677777744 8899999999999986
No 98
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.36 E-value=27 Score=23.92 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=25.8
Q ss_pred cccCCcceeeCceeEEEEeCCEEEEEeeecchhccCCeeEEE
Q 032928 32 SSVLDGLKYASSHEWVKHEGSVATVGITDHAQDHLGEVVFVE 73 (130)
Q Consensus 32 ~~~p~~~~ys~~H~Wv~~e~~~~~vGiTd~a~~~lG~I~~v~ 73 (130)
..+|-.++ . +.||.. ||.+.|.+++|.-..-|+|++.-
T Consensus 42 a~i~GK~R--k-~IwI~~-GD~VlVe~~~yd~~~kg~Iv~r~ 79 (111)
T 2dgy_A 42 VSMPSKYR--K-NIWIKR-GDFLIVDPIEEGEKVKAEISFVL 79 (111)
T ss_dssp EECCTTCC--S-CCCCCS-SCEEEEEECSSCSSCCEEEEEEC
T ss_pred EEechhhc--c-cEEEcC-CCEEEEEecccCCcceEEEEEEe
Confidence 34454444 3 788854 67899999888546668888764
No 99
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=20.28 E-value=47 Score=25.55 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=15.8
Q ss_pred CCCCceEecCCeEEEEEE
Q 032928 75 PETGASVKQGGGFGVVES 92 (130)
Q Consensus 75 p~vG~~v~~Gd~l~~IEs 92 (130)
.++|+.|++||.|+.+-+
T Consensus 184 V~~G~~V~~Gq~IG~vG~ 201 (252)
T 3nyy_A 184 LEKGDPVKAGDLLGYMGD 201 (252)
T ss_dssp CCTTCEECTTCEEEECBC
T ss_pred CCCCCEECCCCEEEEECC
Confidence 478999999999999954
No 100
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=20.20 E-value=70 Score=30.92 Aligned_cols=34 Identities=24% Similarity=0.134 Sum_probs=29.8
Q ss_pred CCCceEecCCeEEEEEEcceeeeeecCcceEEEEec
Q 032928 76 ETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVN 111 (130)
Q Consensus 76 ~vG~~v~~Gd~l~~IEs~K~~~~l~SPvsG~Vv~vN 111 (130)
+.|+.|++||.++.. +-...+|.|.++|+|.-.+
T Consensus 1006 ~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~f~d 1039 (1407)
T 3lu0_D 1006 GDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTD 1039 (1407)
T ss_dssp CSSCEECTTCEEEEC--CSSCCCEECSSCEEEEEES
T ss_pred cCCCEecCCCEEEEE--ecCceeEEeccceEEEEee
Confidence 889999999998865 7789999999999997654
Done!