BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032929
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RH0|A Chain A, Crystal Structure Of Nudc Domain-containing Protein 2
(13542905) From Mus Musculus At 1.95 A Resolution
pdb|2RH0|B Chain B, Crystal Structure Of Nudc Domain-containing Protein 2
(13542905) From Mus Musculus At 1.95 A Resolution
pdb|2RH0|C Chain C, Crystal Structure Of Nudc Domain-containing Protein 2
(13542905) From Mus Musculus At 1.95 A Resolution
pdb|2RH0|D Chain D, Crystal Structure Of Nudc Domain-containing Protein 2
(13542905) From Mus Musculus At 1.95 A Resolution
Length = 157
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 8 EKRHRFLHNGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNH 67
E+R + G +W QTL+E+ I + +PP ++ C +QS+H+ L + G L
Sbjct: 3 EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-ILKG 61
Query: 68 ELTCPVKTDSSFWTLEDD---VMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLML 124
+L D WTLED + +T TKRD W S + + DP+V DQ Q++L L
Sbjct: 62 KLFDSTIADEGTWTLEDRKXVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQXQRKLTL 121
Query: 125 QRFQEE 130
+RFQ+E
Sbjct: 122 ERFQKE 127
>pdb|2CR0|A Chain A, Solution Structure Of Nuclear Move Domain Of Nuclear
Distribution Gene C
Length = 121
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 14 LHNGQTV--FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHEL 69
L NG + + W QTL E+++ + + + K IQ +H+ +G+KG PP ++ EL
Sbjct: 11 LGNGADLPNYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGEL 70
Query: 70 TCPVKTDSSFWTLEDD-VMHITLTKRDKGQTW 100
VK + S W +ED V+ + L K +K + W
Sbjct: 71 YNEVKVEESSWLIEDGKVVTVHLEKINKMEWW 102
>pdb|1WFI|A Chain A, Nuclear Move Domain Of Nuclear Distribution Gene C Homolog
Length = 131
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 21 FEWDQTLDEINIYI--NLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSS 78
+ W QTL E+++ + + + K IQ +H+ +G+KG PP ++ EL VK + S
Sbjct: 10 YRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEES 69
Query: 79 FWTLEDD-VMHITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRL 122
W +ED V+ + L K +K + W + +++ + E +L
Sbjct: 70 SWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKL 114
>pdb|3QOR|A Chain A, Crystal Structure Of Human Nuclear Migration Protein Nudc
pdb|3QOR|B Chain B, Crystal Structure Of Human Nuclear Migration Protein Nudc
pdb|3QOR|D Chain D, Crystal Structure Of Human Nuclear Migration Protein Nudc
pdb|3QOR|E Chain E, Crystal Structure Of Human Nuclear Migration Protein Nudc
Length = 121
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 14 LHNGQTV--FEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIELGIKGNPPYLNHEL 69
L NG + + W QTL E+++ + N + K IQ +H+ +G+KG P ++ EL
Sbjct: 10 LGNGADLPNYRWTQTLSELDLAVPFXVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGEL 69
Query: 70 TCPVKTDSSFWTLEDD-VMHITLTKRDKGQTWA 101
VK + S W + D V+ + L K +K + W+
Sbjct: 70 YNEVKVEESSWLIADGAVVTVHLEKINKMEWWS 102
>pdb|3QOR|C Chain C, Crystal Structure Of Human Nuclear Migration Protein Nudc
Length = 121
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 14 LHNGQTV--FEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIELGIKGNPPYLNHEL 69
L NG + + W QTL E+++ + N + K IQ +H+ +G+KG P ++ EL
Sbjct: 10 LGNGADLPNYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGEL 69
Query: 70 TCPVKTDSSFWTLEDD-VMHITLTKRDKGQTWA 101
VK + S W + D V+ + L K +K + W+
Sbjct: 70 YNEVKVEESSWLIADGAVVTVHLEKINKMEWWS 102
>pdb|2O30|A Chain A, Nuclear Movement Protein From E. Cuniculi Gb-M1
pdb|2O30|B Chain B, Nuclear Movement Protein From E. Cuniculi Gb-M1
Length = 131
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW 80
+ WDQ L+EINI + + S + K I + +G ++ EL V S +W
Sbjct: 7 YTWDQELNEINIQFPVTGDADSSAIKIRXVGKKICVKNQG-EIVIDGELLHEVDVSSLWW 65
Query: 81 TLEDDVMHITLTKRDKGQTWASPIMGQGQLD 111
+ DV+ + +TK+ + + W S ++G +D
Sbjct: 66 VINGDVVDVNVTKK-RNEWWDSLLVGSESVD 95
>pdb|3OPY|A Chain A, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|C Chain C, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|E Chain E, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|G Chain G, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 989
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 29 EINIYINLPPNVHSKQFYCKIQSKHIE-LGIKGNPPYLNHELTCPVKTDS-SFWTLEDDV 86
E+ YI+ HS+ F ++ +H LG+ + P + S S W +DD+
Sbjct: 382 ELVDYIDATAASHSRAFVVEVMGRHCGWLGLMSGIATGADYIFIPERPPSESNW--KDDL 439
Query: 87 MHITLTKRDKGQTWASPIMGQG----QLDPYVTDQEQKRLMLQ 125
+ L R+KG+ + I+ +G QL+P +T +E K ++++
Sbjct: 440 KKVCLRHREKGRRKTTVIVAEGAIDDQLNP-ITSEEVKDVLVE 481
>pdb|1WGV|A Chain A, Solution Structure Of The Cs Domain Of Human Kiaa1068
Protein
Length = 124
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 21 FEWDQTLDEINIYINLPPNV-HSKQFYCKIQSKHIELGI---KGNPPYLNHELTCPVKTD 76
+ W Q ++ + + +P +V KQ + S I + + G + +LT + T+
Sbjct: 22 YTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTE 81
Query: 77 SSFWTLE-DDVMHITLTKRDKGQTWASPIM 105
SS W+LE + + L+K G+ W + I+
Sbjct: 82 SSLWSLEPGKCVLVNLSKV--GEYWWNAIL 109
>pdb|2Y8T|A Chain A, Co-Structure Of Ama1 With A Surface Exposed Region Of
Ron2 From Toxoplasma Gondii
pdb|2Y8T|D Chain D, Co-Structure Of Ama1 With A Surface Exposed Region Of
Ron2 From Toxoplasma Gondii
Length = 432
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 47 CKIQSKHIELGIKGNPPYLNHEL 69
C I KHIEL PPY N+ L
Sbjct: 59 CPIWGKHIELQQPDRPPYRNNFL 81
>pdb|2Y8R|A Chain A, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8R|B Chain B, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8R|D Chain D, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8R|E Chain E, Crystal Structure Of Apo Ama1 Mutant (Tyr230ala) From
Toxoplasma Gondii
pdb|2Y8S|A Chain A, Co-Structure Of An Ama1 Mutant (Y230a) With A Surface
Exposed Region Of Ron2 From Toxoplasma Gondii
pdb|2Y8S|D Chain D, Co-Structure Of An Ama1 Mutant (Y230a) With A Surface
Exposed Region Of Ron2 From Toxoplasma Gondii
Length = 432
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 47 CKIQSKHIELGIKGNPPYLNHEL 69
C I KHIEL PPY N+ L
Sbjct: 59 CPIWGKHIELQQPDRPPYRNNFL 81
>pdb|3O5C|A Chain A, Cytochrome C Peroxidase Bccp Of Shewanella Oneidensis
pdb|3O5C|B Chain B, Cytochrome C Peroxidase Bccp Of Shewanella Oneidensis
pdb|3O5C|C Chain C, Cytochrome C Peroxidase Bccp Of Shewanella Oneidensis
pdb|3O5C|D Chain D, Cytochrome C Peroxidase Bccp Of Shewanella Oneidensis
Length = 320
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 62 PPYLNHELTCPVKTDSSFWTLEDDV 86
P N ELT P D S WTLE+ V
Sbjct: 239 PTLRNIELTYPYFHDGSVWTLEEAV 263
>pdb|3RDR|A Chain A, Structure Of The Catalytic Domain Of Xlya
Length = 157
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 12 RFLHNGQTVFEWDQTLDEINIYINLPPN 39
R+L N T W T+D+ IY +LP N
Sbjct: 48 RYLKNPDTTTSWHFTVDDTEIYQHLPLN 75
>pdb|4HEB|A Chain A, The Crystal Structure Of Maf Protein Of Bacillus Subtilis
pdb|4HEB|B Chain B, The Crystal Structure Of Maf Protein Of Bacillus Subtilis
Length = 210
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 66 NHELTCPVKTDSSFWTL-EDDVMHITLTKRDKGQTWASPIMGQGQL 110
NH T KT+ +FW+L E+++ TK + A I G+G L
Sbjct: 134 NHSETFYDKTEVAFWSLSEEEIWTYIETKEPMDKAGAYGIQGRGAL 179
>pdb|1EX2|A Chain A, Crystal Structure Of Bacillus Subtilis Maf Protein
pdb|1EX2|B Chain B, Crystal Structure Of Bacillus Subtilis Maf Protein
pdb|1EXC|A Chain A, Crystal Structure Of B. Subtilis Maf Protein Complexed
With D-(Utp)
pdb|1EXC|B Chain B, Crystal Structure Of B. Subtilis Maf Protein Complexed
With D-(Utp)
Length = 189
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 66 NHELTCPVKTDSSFWTL-EDDVMHITLTKRDKGQTWASPIMGQGQL 110
NH T KT+ +FW+L E+++ TK + A I G+G L
Sbjct: 113 NHSETFYDKTEVAFWSLSEEEIWTYIETKEPMDKAGAYGIQGRGAL 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,385,955
Number of Sequences: 62578
Number of extensions: 180463
Number of successful extensions: 371
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 356
Number of HSP's gapped (non-prelim): 21
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)