Query 032929
Match_columns 130
No_of_seqs 129 out of 854
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:42:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032929.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032929hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2265 Nuclear distribution p 100.0 1.5E-30 3.3E-35 190.1 9.3 128 2-129 2-133 (179)
2 cd06495 p23_NUDCD3_like p23-li 100.0 3.9E-28 8.5E-33 165.6 11.8 94 18-112 4-102 (102)
3 cd06492 p23_mNUDC_like p23-lik 99.9 2.3E-26 5E-31 152.7 10.4 84 21-104 1-87 (87)
4 cd06493 p23_NUDCD1_like p23_NU 99.9 1.2E-25 2.5E-30 148.3 10.7 84 21-104 1-85 (85)
5 cd06494 p23_NUDCD2_like p23-li 99.9 1.3E-25 2.9E-30 150.9 10.8 86 18-104 5-93 (93)
6 cd06467 p23_NUDC_like p23_like 99.9 1E-23 2.2E-28 137.9 11.4 84 21-104 1-85 (85)
7 cd06465 p23_hB-ind1_like p23_l 99.9 8E-22 1.7E-26 135.1 9.9 94 19-115 1-98 (108)
8 cd06468 p23_CacyBP p23_like do 99.8 3.3E-19 7.1E-24 118.4 10.4 85 19-104 2-92 (92)
9 PF04969 CS: CS domain; Inter 99.8 8.8E-19 1.9E-23 111.8 9.8 75 19-93 1-79 (79)
10 cd06463 p23_like Proteins cont 99.8 1.2E-18 2.6E-23 111.9 9.6 81 23-104 1-84 (84)
11 cd06466 p23_CS_SGT1_like p23_l 99.8 2.8E-18 6E-23 111.6 8.0 80 22-103 1-83 (84)
12 cd00237 p23 p23 binds heat sho 99.8 8.9E-18 1.9E-22 115.3 10.5 89 18-109 1-92 (106)
13 cd06469 p23_DYX1C1_like p23_li 99.8 7.4E-18 1.6E-22 108.4 8.8 78 23-104 1-78 (78)
14 cd06489 p23_CS_hSgt1_like p23_ 99.7 3.4E-17 7.5E-22 107.2 8.4 81 22-104 1-84 (84)
15 cd06488 p23_melusin_like p23_l 99.7 8.9E-17 1.9E-21 106.3 9.1 83 20-104 2-87 (87)
16 KOG4379 Uncharacterized conser 99.5 4.3E-14 9.4E-19 116.4 7.8 107 16-123 287-398 (596)
17 KOG1309 Suppressor of G2 allel 99.5 1.2E-13 2.6E-18 102.0 7.6 88 18-107 3-93 (196)
18 PLN03088 SGT1, suppressor of 99.5 2E-13 4.3E-18 110.5 9.6 88 18-107 156-246 (356)
19 cd06490 p23_NCB5OR p23_like do 99.4 9.6E-13 2.1E-17 87.1 8.8 81 21-103 1-86 (87)
20 KOG3158 HSP90 co-chaperone p23 99.3 2.4E-12 5.2E-17 94.5 6.6 90 18-110 7-100 (180)
21 cd00298 ACD_sHsps_p23-like Thi 99.2 5.4E-11 1.2E-15 74.2 6.6 70 23-93 1-80 (80)
22 KOG1667 Zn2+-binding protein M 98.8 9.8E-09 2.1E-13 79.8 7.2 95 9-105 202-303 (320)
23 KOG3260 Calcyclin-binding prot 98.8 5.2E-09 1.1E-13 77.7 5.3 85 19-105 75-163 (224)
24 COG0071 IbpA Molecular chapero 98.3 7.2E-06 1.6E-10 58.8 9.2 79 17-96 39-135 (146)
25 cd06472 ACD_ScHsp26_like Alpha 98.0 3.5E-05 7.5E-10 50.9 7.5 73 20-93 1-92 (92)
26 PF00011 HSP20: Hsp20/alpha cr 97.9 0.00011 2.3E-09 49.0 7.7 74 22-96 1-90 (102)
27 cd06471 ACD_LpsHSP_like Group 97.8 0.00017 3.8E-09 47.5 7.6 72 20-93 2-93 (93)
28 cd06464 ACD_sHsps-like Alpha-c 97.7 0.00023 5E-09 45.5 7.1 70 23-93 2-88 (88)
29 COG5091 SGT1 Suppressor of G2 97.7 2.2E-05 4.7E-10 62.2 2.3 86 19-106 177-266 (368)
30 cd06497 ACD_alphaA-crystallin_ 97.4 0.00084 1.8E-08 44.1 6.8 69 24-93 6-86 (86)
31 cd06498 ACD_alphaB-crystallin_ 97.4 0.00099 2.1E-08 43.6 6.6 69 25-94 4-84 (84)
32 cd06478 ACD_HspB4-5-6 Alpha-cr 97.4 0.0011 2.3E-08 43.2 6.6 68 25-93 4-83 (83)
33 cd06470 ACD_IbpA-B_like Alpha- 97.3 0.0031 6.8E-08 41.5 8.2 70 21-93 3-90 (90)
34 cd06479 ACD_HspB7_like Alpha c 97.2 0.0011 2.4E-08 43.2 5.6 68 25-93 5-81 (81)
35 PRK10743 heat shock protein Ib 97.2 0.0042 9.1E-08 44.3 9.0 73 19-94 35-124 (137)
36 cd06475 ACD_HspB1_like Alpha c 97.2 0.0026 5.5E-08 41.8 7.3 69 22-91 4-84 (86)
37 cd06526 metazoan_ACD Alpha-cry 97.1 0.0019 4.1E-08 41.8 5.5 65 28-93 7-83 (83)
38 PF08190 PIH1: pre-RNA process 97.0 0.012 2.6E-07 46.6 10.8 66 26-91 259-326 (328)
39 PRK11597 heat shock chaperone 96.9 0.0083 1.8E-07 43.1 8.1 74 18-94 32-122 (142)
40 cd06476 ACD_HspB2_like Alpha c 96.8 0.0076 1.7E-07 39.3 6.6 67 26-93 5-83 (83)
41 cd06481 ACD_HspB9_like Alpha c 96.5 0.013 2.9E-07 38.4 6.2 65 26-91 5-85 (87)
42 cd06477 ACD_HspB3_Like Alpha c 95.9 0.069 1.5E-06 34.9 7.4 66 25-91 4-81 (83)
43 cd06482 ACD_HspB10 Alpha cryst 95.4 0.12 2.5E-06 34.1 6.9 64 26-90 6-84 (87)
44 PF05455 GvpH: GvpH; InterPro 95.3 0.17 3.7E-06 37.7 8.2 69 25-96 98-170 (177)
45 cd06480 ACD_HspB8_like Alpha-c 90.8 1.9 4.1E-05 28.6 6.9 65 26-91 13-89 (91)
46 KOG3247 Uncharacterized conser 78.8 1.7 3.8E-05 36.5 2.5 83 18-103 3-88 (466)
47 COG3354 FlaG Putative archaeal 75.5 6.6 0.00014 28.5 4.4 68 18-92 60-129 (154)
48 cd06464 ACD_sHsps-like Alpha-c 61.2 29 0.00062 21.3 4.9 34 25-58 53-86 (88)
49 KOG0710 Molecular chaperone (s 61.2 18 0.00038 27.1 4.4 76 20-96 84-182 (196)
50 cd00298 ACD_sHsps_p23-like Thi 57.0 33 0.00072 19.9 4.5 32 27-58 47-78 (80)
51 cd06469 p23_DYX1C1_like p23_li 49.3 45 0.00097 20.3 4.2 31 29-59 37-67 (78)
52 cd06526 metazoan_ACD Alpha-cry 47.7 44 0.00095 21.0 4.1 31 28-58 50-81 (83)
53 PF00011 HSP20: Hsp20/alpha cr 46.0 35 0.00077 21.9 3.5 35 25-59 52-86 (102)
54 KOG3591 Alpha crystallins [Pos 41.5 1.4E+02 0.0031 21.9 7.5 67 28-95 72-150 (173)
55 cd03483 MutL_Trans_MLH1 MutL_T 37.7 17 0.00037 25.1 1.0 28 30-61 84-111 (127)
56 cd03485 MutL_Trans_hPMS_1_like 36.3 31 0.00066 23.9 2.1 29 30-62 89-117 (132)
57 COG1470 Predicted membrane pro 30.9 75 0.0016 27.5 3.9 24 28-51 444-467 (513)
58 COG1443 Idi Isopentenyldiphosp 30.6 88 0.0019 23.5 3.8 49 76-125 35-88 (185)
59 PF00055 Laminin_N: Laminin N- 28.8 38 0.00083 26.2 1.7 20 19-38 67-94 (237)
60 PF13349 DUF4097: Domain of un 27.8 1E+02 0.0022 21.3 3.7 30 27-56 117-146 (166)
61 PF15060 PPDFL: Differentiatio 27.4 25 0.00053 24.2 0.4 20 89-108 44-63 (110)
62 smart00136 LamNT Laminin N-ter 26.7 65 0.0014 25.0 2.7 19 20-38 72-96 (238)
63 cd01737 LSm16_N LSm16 belongs 26.2 87 0.0019 19.3 2.6 29 24-52 28-56 (62)
64 PF11869 DUF3389: Protein of u 25.6 1.2E+02 0.0027 19.4 3.4 43 41-83 13-56 (75)
65 PHA03324 nuclear egress membra 21.4 2.4E+02 0.0051 22.1 4.7 43 52-94 71-113 (274)
66 PF05592 Bac_rhamnosid: Bacter 20.8 78 0.0017 26.6 2.3 28 14-41 477-504 (509)
No 1
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=99.97 E-value=1.5e-30 Score=190.11 Aligned_cols=128 Identities=38% Similarity=0.603 Sum_probs=114.9
Q ss_pred CCCCCccccceeeecCCccEEEEeeCCEEEEEEEcCCCC-CCCceEEEEeccEEEEEecCCCceeccCCCCCcccCCcee
Q 032929 2 AEKLAPEKRHRFLHNGQTVFEWDQTLDEINIYINLPPNV-HSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFW 80 (130)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~y~W~Qt~~~V~i~i~lp~~~-~~kdv~V~~~~~~l~v~v~g~~~~l~g~L~~~I~~~~s~w 80 (130)
.+.+.+..|+....++.+.|.|+||..+|+|.|+||+++ ++++|.|.|..++|.|+++|++++++|+|+++|++++|+|
T Consensus 2 ~~~~~eE~p~~~ng~~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~~ildG~L~~~vk~des~W 81 (179)
T KOG2265|consen 2 DEKPKEEKPNSGNGADEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQPPILDGELSHSVKVDESTW 81 (179)
T ss_pred CccccccCCcccCCccccceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCCCCceecCccccccccccceE
Confidence 345556678888888889999999999999999999999 9999999999999999999998899999999999999999
Q ss_pred EeeCCE-EEEEEEeCCCCCCcCCccCCCCCCCHHhHHH-H-HHhhhhhhhhc
Q 032929 81 TLEDDV-MHITLTKRDKGQTWASPIMGQGQLDPYVTDQ-E-QKRLMLQRFQE 129 (130)
Q Consensus 81 ~i~~~~-l~i~L~K~~~~~~W~~L~~~~~~id~~~~~~-~-~~rl~l~r~q~ 129 (130)
+|++++ +.+.|+|.+.+.||.+|++|++.||+..++. . +.++++||||.
T Consensus 82 tiEd~k~i~i~l~K~~~~eWW~~ll~gep~ID~~ki~~e~skl~dldeEtra 133 (179)
T KOG2265|consen 82 TIEDGKMIVILLKKSNKMEWWDSLLEGEPEIDTKKIEPEESKLSDLDEETRA 133 (179)
T ss_pred EecCCEEEEEEeeccchHHHHHHHHcCCCCCCccccChhhhhhhhccHHHHH
Confidence 999996 5666777776799999999999999999987 4 67788888885
No 2
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.96 E-value=3.9e-28 Score=165.57 Aligned_cols=94 Identities=21% Similarity=0.531 Sum_probs=86.1
Q ss_pred CccEEEEeeCCEEEEEEEcCCC-CCCCceEEEEeccEEEEEecC---CCceeccCCCCCcccCCceeEeeCCE-EEEEEE
Q 032929 18 QTVFEWDQTLDEINIYINLPPN-VHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTDSSFWTLEDDV-MHITLT 92 (130)
Q Consensus 18 ~~~y~W~Qt~~~V~i~i~lp~~-~~~kdv~V~~~~~~l~v~v~g---~~~~l~g~L~~~I~~~~s~w~i~~~~-l~i~L~ 92 (130)
...|+|+||.++|+|+|++|++ ++++|++|+|++++|.|++++ +.++++|+||++|++++|+|++++++ |+|+|.
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~G~L~~~V~~des~Wtled~~~l~I~L~ 83 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKINTENSLWSLEPGKCVLLSLS 83 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCceEEeCcccCcccCccceEEEeCCCEEEEEEE
Confidence 4689999999999999999998 579999999999999999974 34799999999999999999999974 899999
Q ss_pred eCCCCCCcCCccCCCCCCCH
Q 032929 93 KRDKGQTWASPIMGQGQLDP 112 (130)
Q Consensus 93 K~~~~~~W~~L~~~~~~id~ 112 (130)
|... .||++|++|+++||.
T Consensus 84 K~~~-~wW~~v~~g~~~iD~ 102 (102)
T cd06495 84 KCSE-VWWNAVLKGEEEIDI 102 (102)
T ss_pred ECCC-cccchhhCCCCcCCC
Confidence 9865 799999999999984
No 3
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=99.94 E-value=2.3e-26 Score=152.73 Aligned_cols=84 Identities=33% Similarity=0.682 Sum_probs=79.3
Q ss_pred EEEEeeCCEEEEEEEcCCC--CCCCceEEEEeccEEEEEecCCCceeccCCCCCcccCCceeEeeCC-EEEEEEEeCCCC
Q 032929 21 FEWDQTLDEINIYINLPPN--VHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDD-VMHITLTKRDKG 97 (130)
Q Consensus 21 y~W~Qt~~~V~i~i~lp~~--~~~kdv~V~~~~~~l~v~v~g~~~~l~g~L~~~I~~~~s~w~i~~~-~l~i~L~K~~~~ 97 (130)
|+|+||.++|+|+|++|.+ ++++|++|++++++|+|+++|++++++|+||++|++++|+|+++++ .|+|+|.|++++
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~K~~~~ 80 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEKINKM 80 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCceEEeCcccCcccccccEEEEeCCCEEEEEEEECCCC
Confidence 8999999999999999887 8999999999999999999997779999999999999999999996 699999999877
Q ss_pred CCcCCcc
Q 032929 98 QTWASPI 104 (130)
Q Consensus 98 ~~W~~L~ 104 (130)
+||++|+
T Consensus 81 ~wW~~l~ 87 (87)
T cd06492 81 EWWSRLV 87 (87)
T ss_pred ccccccC
Confidence 8999984
No 4
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=99.93 E-value=1.2e-25 Score=148.27 Aligned_cols=84 Identities=26% Similarity=0.648 Sum_probs=78.9
Q ss_pred EEEEeeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecCCCceeccCCCCCcccCCceeEeeCC-EEEEEEEeCCCCCC
Q 032929 21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDD-VMHITLTKRDKGQT 99 (130)
Q Consensus 21 y~W~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g~~~~l~g~L~~~I~~~~s~w~i~~~-~l~i~L~K~~~~~~ 99 (130)
|.|+||.++|+|+|++|+++.++|++|+|++++|.|+++++.++++|+||++|++++|+|+++++ .|+|+|.|++++.+
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~~~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~~~~~ 80 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQAPLLEGKLYSSIDHESSTWIIKENKSLEVSLIKKDEGPT 80 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCCCCeEEeCcccCcccccCcEEEEeCCCEEEEEEEECCCCcc
Confidence 89999999999999999999999999999999999999866678999999999999999999877 69999999988889
Q ss_pred cCCcc
Q 032929 100 WASPI 104 (130)
Q Consensus 100 W~~L~ 104 (130)
|++|+
T Consensus 81 W~~L~ 85 (85)
T cd06493 81 WPELV 85 (85)
T ss_pred ccccC
Confidence 99984
No 5
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.93 E-value=1.3e-25 Score=150.85 Aligned_cols=86 Identities=38% Similarity=0.657 Sum_probs=80.3
Q ss_pred CccEEEEeeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecCCCceeccCCCCCcccCCceeEeeCCE-EEEEEEeCCC
Q 032929 18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDV-MHITLTKRDK 96 (130)
Q Consensus 18 ~~~y~W~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g~~~~l~g~L~~~I~~~~s~w~i~~~~-l~i~L~K~~~ 96 (130)
++.|.|+||.++|+|+|++|++++++|+.|.|++++|.|+++|+ .+++|+||++|++++|+|++++++ |+|+|.|.++
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~-~~l~G~L~~~I~~destWtled~k~l~I~L~K~~~ 83 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQ-EVLKGKLFDSVVADECTWTLEDRKLIRIVLTKSNR 83 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEECCE-EEEcCcccCccCcccCEEEEECCcEEEEEEEeCCC
Confidence 57899999999999999999999999999999999999999986 599999999999999999999998 7999999864
Q ss_pred --CCCcCCcc
Q 032929 97 --GQTWASPI 104 (130)
Q Consensus 97 --~~~W~~L~ 104 (130)
|++|++|+
T Consensus 84 ~~~~~W~sl~ 93 (93)
T cd06494 84 DAGNCWKSLL 93 (93)
T ss_pred CCCccccccC
Confidence 46999985
No 6
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=99.91 E-value=1e-23 Score=137.94 Aligned_cols=84 Identities=45% Similarity=0.830 Sum_probs=79.5
Q ss_pred EEEEeeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecCCCceeccCCCCCcccCCceeEeeC-CEEEEEEEeCCCCCC
Q 032929 21 FEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLED-DVMHITLTKRDKGQT 99 (130)
Q Consensus 21 y~W~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g~~~~l~g~L~~~I~~~~s~w~i~~-~~l~i~L~K~~~~~~ 99 (130)
|.|+||.++|+|+|++|+++.++|+.|++++++|+|++.|+.+++.|.||++|++++|+|++++ ++++|+|.|++++.+
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~~~~~ 80 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGGEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRNEGEW 80 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECCCCceEcCcccCceeEcCCEEEEeCCCEEEEEEEECCCCcc
Confidence 8999999999999999999999999999999999999986667899999999999999999999 899999999987679
Q ss_pred cCCcc
Q 032929 100 WASPI 104 (130)
Q Consensus 100 W~~L~ 104 (130)
|++|+
T Consensus 81 W~~L~ 85 (85)
T cd06467 81 WPSLV 85 (85)
T ss_pred ccccC
Confidence 99986
No 7
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=99.87 E-value=8e-22 Score=135.06 Aligned_cols=94 Identities=19% Similarity=0.331 Sum_probs=82.3
Q ss_pred ccEEEEeeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecCC----CceeccCCCCCcccCCceeEeeCCEEEEEEEeC
Q 032929 19 TVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN----PPYLNHELTCPVKTDSSFWTLEDDVMHITLTKR 94 (130)
Q Consensus 19 ~~y~W~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g~----~~~l~g~L~~~I~~~~s~w~i~~~~l~i~L~K~ 94 (130)
|.|.|+||.++|+|+|++|.. +++.|.|++++|.|++.+. ...++++||++|+|++|+|++++++|+|+|.|+
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~---~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~ 77 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA---KDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKK 77 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC---CCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEEC
Confidence 579999999999999999953 8999999999999988642 246899999999999999999999999999999
Q ss_pred CCCCCcCCccCCCCCCCHHhH
Q 032929 95 DKGQTWASPIMGQGQLDPYVT 115 (130)
Q Consensus 95 ~~~~~W~~L~~~~~~id~~~~ 115 (130)
+.+.+|++|..++++++-..+
T Consensus 78 ~~~~~W~~L~~~~~k~~~~~~ 98 (108)
T cd06465 78 EAGEYWPRLTKEKGKLPWLKV 98 (108)
T ss_pred CCCCCCcccccCCCCCCceEC
Confidence 723699999999988775444
No 8
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=99.81 E-value=3.3e-19 Score=118.42 Aligned_cols=85 Identities=22% Similarity=0.427 Sum_probs=73.0
Q ss_pred ccEEEEeeCCEEEEEEEcCCCCC--CCceEEEEeccEEEEEecC---CC-ceeccCCCCCcccCCceeEeeCCEEEEEEE
Q 032929 19 TVFEWDQTLDEINIYINLPPNVH--SKQFYCKIQSKHIELGIKG---NP-PYLNHELTCPVKTDSSFWTLEDDVMHITLT 92 (130)
Q Consensus 19 ~~y~W~Qt~~~V~i~i~lp~~~~--~kdv~V~~~~~~l~v~v~g---~~-~~l~g~L~~~I~~~~s~w~i~~~~l~i~L~ 92 (130)
.+|.|+||.++|+|+|++|.... .+++.|+|++++|.|.+.+ .+ .+..++||++|+|++|+|++.+++|+|.|.
T Consensus 2 ~~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L~ 81 (92)
T cd06468 2 TKYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITLA 81 (92)
T ss_pred ceeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEEE
Confidence 36999999999999999985543 5999999999999999864 22 234567999999999999999999999999
Q ss_pred eCCCCCCcCCcc
Q 032929 93 KRDKGQTWASPI 104 (130)
Q Consensus 93 K~~~~~~W~~L~ 104 (130)
|+++ .+|++|.
T Consensus 82 K~~~-~~W~~L~ 92 (92)
T cd06468 82 KKKE-KKWESLT 92 (92)
T ss_pred eCCC-CccCccC
Confidence 9987 6999983
No 9
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=99.79 E-value=8.8e-19 Score=111.83 Aligned_cols=75 Identities=28% Similarity=0.534 Sum_probs=66.1
Q ss_pred ccEEEEeeCCEEEEEEEc-CCCCCCCceEEEEeccEEEEEec-C--CCceeccCCCCCcccCCceeEeeCCEEEEEEEe
Q 032929 19 TVFEWDQTLDEINIYINL-PPNVHSKQFYCKIQSKHIELGIK-G--NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTK 93 (130)
Q Consensus 19 ~~y~W~Qt~~~V~i~i~l-p~~~~~kdv~V~~~~~~l~v~v~-g--~~~~l~g~L~~~I~~~~s~w~i~~~~l~i~L~K 93 (130)
|+|.|+||.++|+|+|++ |..++++|+.|++++++|.|.+. + ...+++++||++|++++|+|++.+++|+|+|.|
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCCEEEEEETTEEEEEEEB
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchhcEEEEECCEEEEEEEC
Confidence 689999999999999999 54578999999999999999986 2 245789999999999999999999999999987
No 10
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.79 E-value=1.2e-18 Score=111.92 Aligned_cols=81 Identities=35% Similarity=0.581 Sum_probs=73.6
Q ss_pred EEeeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecC---CCceeccCCCCCcccCCceeEeeCCEEEEEEEeCCCCCC
Q 032929 23 WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQT 99 (130)
Q Consensus 23 W~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g---~~~~l~g~L~~~I~~~~s~w~i~~~~l~i~L~K~~~~~~ 99 (130)
|+|+.++|+|+|++|.. .++++.|.++++++.|++.+ ....++++|+++|+++.|+|+++++.|+|.|.|+.++.+
T Consensus 1 W~Q~~~~v~i~v~~~~~-~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~~ 79 (84)
T cd06463 1 WYQTLDEVTITIPLKDV-TKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEPGEW 79 (84)
T ss_pred CcccccEEEEEEEcCCC-CccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCCCCC
Confidence 99999999999999954 48999999999999999874 445789999999999999999999999999999987679
Q ss_pred cCCcc
Q 032929 100 WASPI 104 (130)
Q Consensus 100 W~~L~ 104 (130)
|++|+
T Consensus 80 W~~l~ 84 (84)
T cd06463 80 WPRLE 84 (84)
T ss_pred CcccC
Confidence 99984
No 11
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.76 E-value=2.8e-18 Score=111.62 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=72.6
Q ss_pred EEEeeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecC---CCceeccCCCCCcccCCceeEeeCCEEEEEEEeCCCCC
Q 032929 22 EWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQ 98 (130)
Q Consensus 22 ~W~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g---~~~~l~g~L~~~I~~~~s~w~i~~~~l~i~L~K~~~~~ 98 (130)
.|+||.++|+|+|++| ++.++++.|.++++++.|++.+ ....++++||++|+|++|+|++++++|+|+|.|+.+ .
T Consensus 1 dW~Qt~~~v~i~v~~~-~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~-~ 78 (84)
T cd06466 1 DWYQTDTSVTVTIYAK-NVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEP-G 78 (84)
T ss_pred CccccCCEEEEEEEEC-CCCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCC-C
Confidence 4999999999999988 8889999999999999998762 345689999999999999999999999999999987 5
Q ss_pred CcCCc
Q 032929 99 TWASP 103 (130)
Q Consensus 99 ~W~~L 103 (130)
+|++|
T Consensus 79 ~W~~L 83 (84)
T cd06466 79 SWPSL 83 (84)
T ss_pred CCccC
Confidence 89998
No 12
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=99.76 E-value=8.9e-18 Score=115.26 Aligned_cols=89 Identities=17% Similarity=0.182 Sum_probs=78.5
Q ss_pred CccEEEEeeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecC---CCceeccCCCCCcccCCceeEeeCCEEEEEEEeC
Q 032929 18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKR 94 (130)
Q Consensus 18 ~~~y~W~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g---~~~~l~g~L~~~I~~~~s~w~i~~~~l~i~L~K~ 94 (130)
.|.+.|+|+.+.|+|+|.+|+ .+|+.|++++++|+|+..| ....++.+||++|+|++|++++.+.+|+|.|.|+
T Consensus 1 ~p~v~WaQr~~~V~ltI~v~d---~~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~ 77 (106)
T cd00237 1 PAKTLWYDRRDYVFIEFCVED---SKDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKG 77 (106)
T ss_pred CCcceeeECCCEEEEEEEeCC---CCCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeC
Confidence 368999999999999999994 7899999999999998753 3345788999999999999999999999999998
Q ss_pred CCCCCcCCccCCCCC
Q 032929 95 DKGQTWASPIMGQGQ 109 (130)
Q Consensus 95 ~~~~~W~~L~~~~~~ 109 (130)
+.+.+|++|.+...+
T Consensus 78 ~~~~~WprL~k~~~k 92 (106)
T cd00237 78 KEGVAWPRLTKEKAK 92 (106)
T ss_pred CCCCCCchhhcCCCC
Confidence 766689999987654
No 13
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.75 E-value=7.4e-18 Score=108.41 Aligned_cols=78 Identities=19% Similarity=0.396 Sum_probs=70.7
Q ss_pred EEeeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecCCCceeccCCCCCcccCCceeEeeCCEEEEEEEeCCCCCCcCC
Q 032929 23 WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQTWAS 102 (130)
Q Consensus 23 W~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g~~~~l~g~L~~~I~~~~s~w~i~~~~l~i~L~K~~~~~~W~~ 102 (130)
|+||.++|+|+|.+| ++.+.+++|+++++++.|+. ....+.++||++|++++|+|++++++|+|+|.|+++ .+|++
T Consensus 1 W~Qt~~~v~i~i~~p-~v~~~~v~v~~~~~~l~i~~--~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~-~~W~~ 76 (78)
T cd06469 1 WSQTDEDVKISVPLK-GVKTSKVDIFCSDLYLKVNF--PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEP-GIWEA 76 (78)
T ss_pred CcccCCEEEEEEEeC-CCccccceEEEecCEEEEcC--CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCC-Ccccc
Confidence 999999999999999 78999999999999887765 345688999999999999999999999999999987 59999
Q ss_pred cc
Q 032929 103 PI 104 (130)
Q Consensus 103 L~ 104 (130)
|.
T Consensus 77 L~ 78 (78)
T cd06469 77 LC 78 (78)
T ss_pred cC
Confidence 83
No 14
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=99.72 E-value=3.4e-17 Score=107.23 Aligned_cols=81 Identities=21% Similarity=0.351 Sum_probs=72.2
Q ss_pred EEEeeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecC---CCceeccCCCCCcccCCceeEeeCCEEEEEEEeCCCCC
Q 032929 22 EWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG---NPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDKGQ 98 (130)
Q Consensus 22 ~W~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g---~~~~l~g~L~~~I~~~~s~w~i~~~~l~i~L~K~~~~~ 98 (130)
.|+|+.+.|+|+|.++ ++.++++.|+|+++++.|++.+ ....++++||++|+|++|+|++.+++|+|.|.|+++ .
T Consensus 1 dW~Q~~~~V~iti~~k-~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~-~ 78 (84)
T cd06489 1 DWYQTESQVVITILIK-NVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEA-I 78 (84)
T ss_pred CccccCCEEEEEEEEC-CCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCC-C
Confidence 4999999999999976 7888999999999999998753 345688999999999999999999999999999875 6
Q ss_pred CcCCcc
Q 032929 99 TWASPI 104 (130)
Q Consensus 99 ~W~~L~ 104 (130)
+|++|.
T Consensus 79 ~W~~Le 84 (84)
T cd06489 79 RWSKLE 84 (84)
T ss_pred CCccCC
Confidence 999983
No 15
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=99.71 E-value=8.9e-17 Score=106.32 Aligned_cols=83 Identities=18% Similarity=0.220 Sum_probs=72.3
Q ss_pred cEEEEeeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEec---CCCceeccCCCCCcccCCceeEeeCCEEEEEEEeCCC
Q 032929 20 VFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDK 96 (130)
Q Consensus 20 ~y~W~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~---g~~~~l~g~L~~~I~~~~s~w~i~~~~l~i~L~K~~~ 96 (130)
+|.|+|+.+.|+|+|.++ ++.++++.|.++++++.|.+. |....+..+||++|+|+.|+|++.+++|+|.|.|+++
T Consensus 2 R~dW~Qs~~~V~ItI~~k-~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~~~ 80 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAK-NSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKAEP 80 (87)
T ss_pred CccEeeCCCEEEEEEEEC-cCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChhHcEEEecCcEEEEEEEeCCC
Confidence 589999999999999875 888999999999999877653 3234577899999999999999999999999999987
Q ss_pred CCCcCCcc
Q 032929 97 GQTWASPI 104 (130)
Q Consensus 97 ~~~W~~L~ 104 (130)
..|++|.
T Consensus 81 -~~W~~Le 87 (87)
T cd06488 81 -GSWAKLE 87 (87)
T ss_pred -CcCccCC
Confidence 4999983
No 16
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]
Probab=99.51 E-value=4.3e-14 Score=116.39 Aligned_cols=107 Identities=21% Similarity=0.368 Sum_probs=96.3
Q ss_pred cCCccEEEEeeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecCCCceeccCCCCCcccCCceeEeeC-CEEEEEEEeC
Q 032929 16 NGQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLED-DVMHITLTKR 94 (130)
Q Consensus 16 ~g~~~y~W~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g~~~~l~g~L~~~I~~~~s~w~i~~-~~l~i~L~K~ 94 (130)
.|.|.|.|.||.+++.+++.+|..++.+++.|.+.++++.+..... .+|+|.||..|..+.|.|.|.. ++|++.|.|+
T Consensus 287 ~~~p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~~dh-~~~~g~lyasv~he~s~~ii~ean~Le~sl~K~ 365 (596)
T KOG4379|consen 287 GGPPSYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKHLDH-VIFDGELYASVGHELSAFIIAEANGLELSLTKA 365 (596)
T ss_pred cCCccceeeeccCcceEEEecccccccceEEEEecCceEEEEeeee-EEeccchhhhccccchhhhhhhhccceEEEeec
Confidence 3468999999999999999999999999999999999998888765 7899999999999999999988 7999999999
Q ss_pred CCCCCcCCccCCCC--CC--CHHhHHHHHHhhh
Q 032929 95 DKGQTWASPIMGQG--QL--DPYVTDQEQKRLM 123 (130)
Q Consensus 95 ~~~~~W~~L~~~~~--~i--d~~~~~~~~~rl~ 123 (130)
+.+.-|++|+.++. +| |.+.++.+++||+
T Consensus 366 de~~twprL~~~dksGEideDveiCad~aEkLi 398 (596)
T KOG4379|consen 366 DEIQTWPRLFAQDKSGEIDEDVEICADVAEKLI 398 (596)
T ss_pred ccccccchheeecccccchhhhHHHHHHHHHhh
Confidence 77789999998763 44 7888899999986
No 17
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=99.48 E-value=1.2e-13 Score=101.95 Aligned_cols=88 Identities=23% Similarity=0.301 Sum_probs=76.1
Q ss_pred CccEEEEeeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEec---CCCceeccCCCCCcccCCceeEeeCCEEEEEEEeC
Q 032929 18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKR 94 (130)
Q Consensus 18 ~~~y~W~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~---g~~~~l~g~L~~~I~~~~s~w~i~~~~l~i~L~K~ 94 (130)
..+|.|+|+.++|+|+|.. +++...||+|.|..+.+++.+. |....+.+.||++|.|+.|++++-+.+|+|+|.|.
T Consensus 3 k~r~DwyQt~~~vvIti~~-k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L~K~ 81 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFA-KNVPKEDVNVEISENTLSIVIQLPSGSEYNLQLKLYHEIIPEKSSFKVFSTKVEITLAKA 81 (196)
T ss_pred cccceeecCCceEEEEEEe-cCCCccceeEEeecceEEEEEecCCchhhhhhHHhcccccccceeeEeeeeeEEEEeccc
Confidence 4689999999999999965 4888999999999888877665 33345788899999999999999999999999997
Q ss_pred CCCCCcCCccCCC
Q 032929 95 DKGQTWASPIMGQ 107 (130)
Q Consensus 95 ~~~~~W~~L~~~~ 107 (130)
+ +..|..|.+|.
T Consensus 82 ~-~irW~~Le~g~ 93 (196)
T KOG1309|consen 82 E-IIRWESLEKGK 93 (196)
T ss_pred c-chhhhhhhccc
Confidence 5 48999999665
No 18
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.48 E-value=2e-13 Score=110.54 Aligned_cols=88 Identities=18% Similarity=0.238 Sum_probs=76.7
Q ss_pred CccEEEEeeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEec---CCCceeccCCCCCcccCCceeEeeCCEEEEEEEeC
Q 032929 18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKR 94 (130)
Q Consensus 18 ~~~y~W~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~---g~~~~l~g~L~~~I~~~~s~w~i~~~~l~i~L~K~ 94 (130)
..+|.|+||.+.|+|+|.++ ++.+.++.|+|++++++|.+. |....+..+||++|+|+.|++++...+|+|+|.|+
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k-~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~Kiei~l~K~ 234 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAK-GVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKCKYEVLSTKIEIRLAKA 234 (356)
T ss_pred ccccceeecCCEEEEEEEec-CCChHHcEEEeecCEEEEEEecCCCcceeecccccccccccccEEEEecceEEEEEecC
Confidence 36899999999999999876 889999999999999988874 33344678999999999999999999999999999
Q ss_pred CCCCCcCCccCCC
Q 032929 95 DKGQTWASPIMGQ 107 (130)
Q Consensus 95 ~~~~~W~~L~~~~ 107 (130)
++ ..|++|...+
T Consensus 235 ~~-~~W~~L~~~~ 246 (356)
T PLN03088 235 EP-ITWASLEYGK 246 (356)
T ss_pred CC-CCccccccCC
Confidence 76 6899997543
No 19
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=99.44 E-value=9.6e-13 Score=87.13 Aligned_cols=81 Identities=17% Similarity=0.297 Sum_probs=65.1
Q ss_pred EEEEeeCCEEEEEEEcCC-CCCCCceEEEEeccEEEEEec--CCCceeccCCCCCcccCCceeEee--CCEEEEEEEeCC
Q 032929 21 FEWDQTLDEINIYINLPP-NVHSKQFYCKIQSKHIELGIK--GNPPYLNHELTCPVKTDSSFWTLE--DDVMHITLTKRD 95 (130)
Q Consensus 21 y~W~Qt~~~V~i~i~lp~-~~~~kdv~V~~~~~~l~v~v~--g~~~~l~g~L~~~I~~~~s~w~i~--~~~l~i~L~K~~ 95 (130)
|.|+||.+.|+|+|..+. +....++.+.+..+++++.+. +....++.+||++|+++. +.++. .++|+|.|+|++
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K~e 79 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILGDKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLKKKE 79 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECCCceEEEeeeccccCCCCc-EEEEcccCceEEEEEEcCC
Confidence 689999999999998764 556667778888888888764 443457779999998554 88887 569999999998
Q ss_pred CCCCcCCc
Q 032929 96 KGQTWASP 103 (130)
Q Consensus 96 ~~~~W~~L 103 (130)
+ ..|++|
T Consensus 80 ~-~~W~~L 86 (87)
T cd06490 80 P-EKWTSL 86 (87)
T ss_pred C-CccccC
Confidence 7 589987
No 20
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.4e-12 Score=94.46 Aligned_cols=90 Identities=13% Similarity=0.239 Sum_probs=77.5
Q ss_pred CccEEEEeeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecCCC----ceeccCCCCCcccCCceeEeeCCEEEEEEEe
Q 032929 18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNP----PYLNHELTCPVKTDSSFWTLEDDVMHITLTK 93 (130)
Q Consensus 18 ~~~y~W~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g~~----~~l~g~L~~~I~~~~s~w~i~~~~l~i~L~K 93 (130)
.|...|+|+.+-|+++|.|+ .++++.|+++++.|.|+.++.. ..+..+||+.|+|+.|+.+..+..+...|+|
T Consensus 7 ~p~v~Waqr~~~vyltv~Ve---d~~d~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~K 83 (180)
T KOG3158|consen 7 PPEVKWAQRRDLVYLTVCVE---DAKDVHVNLEPSKLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILRK 83 (180)
T ss_pred CCcchhhhhcCeEEEEEEec---cCccceeeccccEEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEEc
Confidence 47899999999999999999 5889999999999999887531 2356899999999999999998888888888
Q ss_pred CCCCCCcCCccCCCCCC
Q 032929 94 RDKGQTWASPIMGQGQL 110 (130)
Q Consensus 94 ~~~~~~W~~L~~~~~~i 110 (130)
++.+.+||+|++...++
T Consensus 84 ~e~~~~WprLtkeK~K~ 100 (180)
T KOG3158|consen 84 KELGEYWPRLTKEKAKL 100 (180)
T ss_pred cccccccchhhhccccc
Confidence 87668999999887544
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.21 E-value=5.4e-11 Score=74.25 Aligned_cols=70 Identities=29% Similarity=0.402 Sum_probs=62.1
Q ss_pred EEeeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecC----------CCceeccCCCCCcccCCceeEeeCCEEEEEEE
Q 032929 23 WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG----------NPPYLNHELTCPVKTDSSFWTLEDDVMHITLT 92 (130)
Q Consensus 23 W~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g----------~~~~l~g~L~~~I~~~~s~w~i~~~~l~i~L~ 92 (130)
|+|+.+.+.|+|++| +..++++.|.++++.|.|++.. ........|+++|+++.++|.+.++.|.|.|.
T Consensus 1 ~~q~~~~v~i~i~~~-~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 1 WYQTDDEVVVTVDLP-GVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred CEEcCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence 899999999999999 5679999999999999998753 22356788999999999999999999999997
Q ss_pred e
Q 032929 93 K 93 (130)
Q Consensus 93 K 93 (130)
|
T Consensus 80 K 80 (80)
T cd00298 80 K 80 (80)
T ss_pred C
Confidence 6
No 22
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=98.84 E-value=9.8e-09 Score=79.79 Aligned_cols=95 Identities=20% Similarity=0.340 Sum_probs=73.8
Q ss_pred ccceeeecCC---ccEEEEeeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEec---CCCce-eccCCCCCcccCCceeE
Q 032929 9 KRHRFLHNGQ---TVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNPPY-LNHELTCPVKTDSSFWT 81 (130)
Q Consensus 9 ~~~~~~~~g~---~~y~W~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~---g~~~~-l~g~L~~~I~~~~s~w~ 81 (130)
++|..+.|-. =+|.|.||...|+|.|.-. +..+.--.|+..+..|.|.+. |+..+ ++-+|++-|++++|+-.
T Consensus 202 GeH~w~k~~~V~~cR~Dwhqt~~~Vti~VY~k-~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v~ 280 (320)
T KOG1667|consen 202 GEHKWRKNEIVVKCRHDWHQTNGFVTINVYAK-GALPETSNIEANGTTLHVSIVFGFGNASFDLDYKLWGVVNVEESSVV 280 (320)
T ss_pred cchhhhccCccccchhhhhhcCCeEEEEEEec-cCCcccceeeeCCeEEEEEEEecCCCceeeccceeeeeechhhceEE
Confidence 4555555543 3799999999999999854 444555677777777777654 44333 56799999999999999
Q ss_pred eeCCEEEEEEEeCCCCCCcCCccC
Q 032929 82 LEDDVMHITLTKRDKGQTWASPIM 105 (130)
Q Consensus 82 i~~~~l~i~L~K~~~~~~W~~L~~ 105 (130)
+...+|+|+|.|+++| .|++|--
T Consensus 281 m~~tkVEIsl~k~ep~-sWa~Le~ 303 (320)
T KOG1667|consen 281 MGETKVEISLKKAEPG-SWARLEF 303 (320)
T ss_pred eecceEEEEEeccCCC-CcccccC
Confidence 9999999999999985 8999954
No 23
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=98.84 E-value=5.2e-09 Score=77.74 Aligned_cols=85 Identities=20% Similarity=0.410 Sum_probs=73.9
Q ss_pred ccEEEEeeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEec---CCC-ceeccCCCCCcccCCceeEeeCCEEEEEEEeC
Q 032929 19 TVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK---GNP-PYLNHELTCPVKTDSSFWTLEDDVMHITLTKR 94 (130)
Q Consensus 19 ~~y~W~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~---g~~-~~l~g~L~~~I~~~~s~w~i~~~~l~i~L~K~ 94 (130)
..|.|.|+.+.|.++|.|. |+...+|+|.|++.++-+.++ |.. ..+-.+|+++|+++.|+-.+..+.+.|.++|.
T Consensus 75 t~ygWDQs~kfVK~yItL~-GV~eenVqv~ftp~Sldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkV 153 (224)
T KOG3260|consen 75 TLYGWDQSNKFVKMYITLE-GVDEENVQVEFTPMSLDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKV 153 (224)
T ss_pred hhcCccccCCeeEEEEEee-cccccceeEEecccceeeeeeecCCcceeeehhhhccccChhhcccccccceEEEeehhh
Confidence 3699999999999999986 888999999999999998876 442 24667999999999999999999999999887
Q ss_pred CCCCCcCCccC
Q 032929 95 DKGQTWASPIM 105 (130)
Q Consensus 95 ~~~~~W~~L~~ 105 (130)
+. ..|+.|..
T Consensus 154 e~-~rwd~Lt~ 163 (224)
T KOG3260|consen 154 EN-TRWDYLTQ 163 (224)
T ss_pred hc-ccchHHHH
Confidence 65 68999863
No 24
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=7.2e-06 Score=58.76 Aligned_cols=79 Identities=16% Similarity=0.270 Sum_probs=67.4
Q ss_pred CCccEEEEeeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecCCC-----------------ce-eccCCCCCcccCCc
Q 032929 17 GQTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNP-----------------PY-LNHELTCPVKTDSS 78 (130)
Q Consensus 17 g~~~y~W~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g~~-----------------~~-l~g~L~~~I~~~~s 78 (130)
+.|+|...++.+.+.|++.|| |++++|++|.++++.|.|+..-.. .+ -.-.|...|+++..
T Consensus 39 ~~P~vdi~e~~~~~~I~~elP-G~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~ 117 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELP-GVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVI 117 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcC-CCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccce
Confidence 579999999999999999999 999999999999999888764210 01 23578999999988
Q ss_pred eeEeeCCEEEEEEEeCCC
Q 032929 79 FWTLEDDVMHITLTKRDK 96 (130)
Q Consensus 79 ~w~i~~~~l~i~L~K~~~ 96 (130)
.-++.+|.|.|.|.|..+
T Consensus 118 ~A~~~nGvL~I~lpk~~~ 135 (146)
T COG0071 118 KAKYKNGLLTVTLPKAEP 135 (146)
T ss_pred eeEeeCcEEEEEEecccc
Confidence 999999999999999765
No 25
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=98.04 E-value=3.5e-05 Score=50.94 Aligned_cols=73 Identities=15% Similarity=0.286 Sum_probs=58.7
Q ss_pred cEEEEeeCCEEEEEEEcCCCCCCCceEEEEecc-EEEEEecC--------CC---------ce-eccCCCCCcccCCcee
Q 032929 20 VFEWDQTLDEINIYINLPPNVHSKQFYCKIQSK-HIELGIKG--------NP---------PY-LNHELTCPVKTDSSFW 80 (130)
Q Consensus 20 ~y~W~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~-~l~v~v~g--------~~---------~~-l~g~L~~~I~~~~s~w 80 (130)
++.|.++.+.+.|.+.|| |++++|+.|.+..+ .|.|+..- .. .+ -...|...|+++.-+.
T Consensus 1 ~~dv~E~~~~~~i~~~lP-Gv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A 79 (92)
T cd06472 1 RVDWKETPEAHVFKADVP-GVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKA 79 (92)
T ss_pred CccEEEcCCeEEEEEECC-CCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEE
Confidence 367999999999999999 89999999999865 67776531 00 11 2347888999998899
Q ss_pred EeeCCEEEEEEEe
Q 032929 81 TLEDDVMHITLTK 93 (130)
Q Consensus 81 ~i~~~~l~i~L~K 93 (130)
.+.+|.|.|+|.|
T Consensus 80 ~~~nGvL~I~lPK 92 (92)
T cd06472 80 FLENGVLTVTVPK 92 (92)
T ss_pred EEECCEEEEEecC
Confidence 9999999999876
No 26
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=97.87 E-value=0.00011 Score=49.01 Aligned_cols=74 Identities=20% Similarity=0.321 Sum_probs=56.7
Q ss_pred EEEeeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecCC------C---------ce-eccCCCCCcccCCceeEeeCC
Q 032929 22 EWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN------P---------PY-LNHELTCPVKTDSSFWTLEDD 85 (130)
Q Consensus 22 ~W~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g~------~---------~~-l~g~L~~~I~~~~s~w~i~~~ 85 (130)
.|.++.+.+.|.+.+| |+.++|++|.+..+.|.|..... . .| -.-.|...|+++.-+.++.+|
T Consensus 1 di~e~~~~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~G 79 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENG 79 (102)
T ss_dssp EEEESSSEEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTS
T ss_pred CeEECCCEEEEEEECC-CCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCC
Confidence 4789999999999999 89999999999999988875411 1 11 234788899999989999999
Q ss_pred EEEEEEEeCCC
Q 032929 86 VMHITLTKRDK 96 (130)
Q Consensus 86 ~l~i~L~K~~~ 96 (130)
.|.|.+.|...
T Consensus 80 vL~I~~pk~~~ 90 (102)
T PF00011_consen 80 VLTITIPKKEE 90 (102)
T ss_dssp EEEEEEEBSSS
T ss_pred EEEEEEEcccc
Confidence 99999999764
No 27
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=97.80 E-value=0.00017 Score=47.49 Aligned_cols=72 Identities=21% Similarity=0.274 Sum_probs=57.1
Q ss_pred cEEEEeeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecCCC---------ce---------ec--cCCCCCcccCCce
Q 032929 20 VFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNP---------PY---------LN--HELTCPVKTDSSF 79 (130)
Q Consensus 20 ~y~W~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g~~---------~~---------l~--g~L~~~I~~~~s~ 79 (130)
+..+.++.+.+.|.+.|| |++++|++|.+.++.|.|+..... .+ +. -.|. .|+++..+
T Consensus 2 ~~di~e~~~~~~i~~~lP-Gv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~ 79 (93)
T cd06471 2 KTDIKETDDEYIVEADLP-GFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIK 79 (93)
T ss_pred ceeEEEcCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCE
Confidence 468899999999999999 899999999999999998653110 01 11 1354 68888888
Q ss_pred eEeeCCEEEEEEEe
Q 032929 80 WTLEDDVMHITLTK 93 (130)
Q Consensus 80 w~i~~~~l~i~L~K 93 (130)
.++.+|.|.|+|.|
T Consensus 80 A~~~dGvL~I~lPK 93 (93)
T cd06471 80 AKYENGVLKITLPK 93 (93)
T ss_pred EEEECCEEEEEEcC
Confidence 99999999999876
No 28
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.72 E-value=0.00023 Score=45.47 Aligned_cols=70 Identities=20% Similarity=0.252 Sum_probs=57.5
Q ss_pred EEeeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecCC----------------Cce-eccCCCCCcccCCceeEeeCC
Q 032929 23 WDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN----------------PPY-LNHELTCPVKTDSSFWTLEDD 85 (130)
Q Consensus 23 W~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g~----------------~~~-l~g~L~~~I~~~~s~w~i~~~ 85 (130)
+.++.+.+.|.+.+| |+.++++.|.+.++.|.|...-. ..+ -.-.|...|+++..+..+.+|
T Consensus 2 i~e~~~~~~i~~~lp-g~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G 80 (88)
T cd06464 2 VYETDDAYVVEADLP-GFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG 80 (88)
T ss_pred cEEcCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCC
Confidence 567889999999999 79999999999999999875311 011 234699999999999999999
Q ss_pred EEEEEEEe
Q 032929 86 VMHITLTK 93 (130)
Q Consensus 86 ~l~i~L~K 93 (130)
.|.|.+.|
T Consensus 81 ~L~I~~pk 88 (88)
T cd06464 81 VLTITLPK 88 (88)
T ss_pred EEEEEEcC
Confidence 99999865
No 29
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=97.70 E-value=2.2e-05 Score=62.24 Aligned_cols=86 Identities=15% Similarity=0.175 Sum_probs=68.5
Q ss_pred ccEEEEeeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecCC--C--ceeccCCCCCcccCCceeEeeCCEEEEEEEeC
Q 032929 19 TVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN--P--PYLNHELTCPVKTDSSFWTLEDDVMHITLTKR 94 (130)
Q Consensus 19 ~~y~W~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g~--~--~~l~g~L~~~I~~~~s~w~i~~~~l~i~L~K~ 94 (130)
..|.|+||...+.|.|.-| .+...+|++.++++.|++.++-. . ..+...||++|+|+.++.++-+.+++++|+|.
T Consensus 177 i~yd~s~Ts~t~~ifiy~~-pv~deqVs~~~e~NTL~I~~q~~~~~~~~~~~~~Ly~ev~P~~~s~k~fsK~~e~~l~KV 255 (368)
T COG5091 177 IAYDFSETSDTAIIFIYRP-PVGDEQVSPVLEGNTLSISYQPRRLRLWNDITISLYKEVYPDIRSIKSFSKRVEVHLRKV 255 (368)
T ss_pred eeeeccccceeEEEEEecC-CCCccccceeecCCcceeeeeccccchHHHhhhhhhhhcCcchhhhhhcchhheehhhhh
Confidence 3689999999988888644 57788899999999888887521 1 13567899999999999999888899999998
Q ss_pred CCCCCcCCccCC
Q 032929 95 DKGQTWASPIMG 106 (130)
Q Consensus 95 ~~~~~W~~L~~~ 106 (130)
+. ..|..|...
T Consensus 256 ~~-v~W~~l~~~ 266 (368)
T COG5091 256 EM-VRWGGLNGR 266 (368)
T ss_pred hh-hhhcccccC
Confidence 64 778887643
No 30
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=97.42 E-value=0.00084 Score=44.11 Aligned_cols=69 Identities=17% Similarity=0.300 Sum_probs=56.2
Q ss_pred EeeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecCC-----Cce----e--ccCCCCCcccCCceeEe-eCCEEEEEE
Q 032929 24 DQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPY----L--NHELTCPVKTDSSFWTL-EDDVMHITL 91 (130)
Q Consensus 24 ~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g~-----~~~----l--~g~L~~~I~~~~s~w~i-~~~~l~i~L 91 (130)
..+.+.+.|.+.+| |+++.|++|++..+.|.|+..-. ..+ | .-.|...|+++.-+-.+ .+|.|.|+|
T Consensus 6 ~e~~~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 84 (86)
T cd06497 6 RSDRDKFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSG 84 (86)
T ss_pred EEcCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEe
Confidence 45788999999998 99999999999999998876411 112 2 34788899999999999 789999998
Q ss_pred Ee
Q 032929 92 TK 93 (130)
Q Consensus 92 ~K 93 (130)
.|
T Consensus 85 PK 86 (86)
T cd06497 85 PK 86 (86)
T ss_pred cC
Confidence 76
No 31
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=97.36 E-value=0.00099 Score=43.62 Aligned_cols=69 Identities=13% Similarity=0.240 Sum_probs=55.5
Q ss_pred eeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecCC-----Cce----e--ccCCCCCcccCCceeEee-CCEEEEEEE
Q 032929 25 QTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPY----L--NHELTCPVKTDSSFWTLE-DDVMHITLT 92 (130)
Q Consensus 25 Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g~-----~~~----l--~g~L~~~I~~~~s~w~i~-~~~l~i~L~ 92 (130)
-+.+...|.+.+| |++++|++|++..+.|.|+..-. ..+ | .-.|...|+++.-+-++. +|.|.|+|.
T Consensus 4 ~~~~~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lP 82 (84)
T cd06498 4 LEKDKFSVNLDVK-HFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGP 82 (84)
T ss_pred eCCceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEe
Confidence 3578899999998 99999999999999999876411 111 2 246888999999999995 999999997
Q ss_pred eC
Q 032929 93 KR 94 (130)
Q Consensus 93 K~ 94 (130)
|.
T Consensus 83 k~ 84 (84)
T cd06498 83 RK 84 (84)
T ss_pred CC
Confidence 63
No 32
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=97.36 E-value=0.0011 Score=43.25 Aligned_cols=68 Identities=15% Similarity=0.234 Sum_probs=54.5
Q ss_pred eeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecCC-----Cce----e--ccCCCCCcccCCceeEe-eCCEEEEEEE
Q 032929 25 QTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPY----L--NHELTCPVKTDSSFWTL-EDDVMHITLT 92 (130)
Q Consensus 25 Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g~-----~~~----l--~g~L~~~I~~~~s~w~i-~~~~l~i~L~ 92 (130)
.+.+.+.|.+.+| |++++|++|++..+.|.|+..-. .-+ | .-.|...|+++.-+-.+ .+|.|.|++.
T Consensus 4 ~~~~~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~P 82 (83)
T cd06478 4 LDKDRFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGP 82 (83)
T ss_pred ecCceEEEEEECC-CCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEec
Confidence 4678899999998 99999999999999998876411 112 2 24688889999888999 5899999986
Q ss_pred e
Q 032929 93 K 93 (130)
Q Consensus 93 K 93 (130)
|
T Consensus 83 K 83 (83)
T cd06478 83 R 83 (83)
T ss_pred C
Confidence 5
No 33
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=97.27 E-value=0.0031 Score=41.48 Aligned_cols=70 Identities=14% Similarity=0.266 Sum_probs=52.5
Q ss_pred EEEEee-CCEEEEEEEcCCCCCCCceEEEEeccEEEEEecC-------CC---------ce-eccCCCCCcccCCceeEe
Q 032929 21 FEWDQT-LDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG-------NP---------PY-LNHELTCPVKTDSSFWTL 82 (130)
Q Consensus 21 y~W~Qt-~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g-------~~---------~~-l~g~L~~~I~~~~s~w~i 82 (130)
+.=.++ .+...|.+.|| |+++.|++|.+..+.|.|+..- .. .+ -.-.|...|+.+ ...+
T Consensus 3 ~di~e~~~~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~ 79 (90)
T cd06470 3 YNIEKTGENNYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAEL 79 (90)
T ss_pred eeeEEcCCCeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEE
Confidence 344455 48999999999 8999999999999999998531 00 01 124677788875 6789
Q ss_pred eCCEEEEEEEe
Q 032929 83 EDDVMHITLTK 93 (130)
Q Consensus 83 ~~~~l~i~L~K 93 (130)
++|.|.|+|.+
T Consensus 80 ~~GvL~I~l~~ 90 (90)
T cd06470 80 ENGLLTIDLER 90 (90)
T ss_pred eCCEEEEEEEC
Confidence 99999999864
No 34
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=97.23 E-value=0.0011 Score=43.21 Aligned_cols=68 Identities=15% Similarity=0.222 Sum_probs=55.0
Q ss_pred eeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecC--C--Cc---e-eccCCCCCcccCCceeEe-eCCEEEEEEEe
Q 032929 25 QTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG--N--PP---Y-LNHELTCPVKTDSSFWTL-EDDVMHITLTK 93 (130)
Q Consensus 25 Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g--~--~~---~-l~g~L~~~I~~~~s~w~i-~~~~l~i~L~K 93 (130)
.+.+.+.|.+.+| +++++|++|++..+.|.|+..- . .. + =.-.|...|+++.-+-.+ .+|.|.|++.+
T Consensus 5 e~~~~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 5 TLGDTYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred CcCCeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 5788999999999 9999999999999999987631 0 11 1 124789999999999998 88999998853
No 35
>PRK10743 heat shock protein IbpA; Provisional
Probab=97.23 E-value=0.0042 Score=44.35 Aligned_cols=73 Identities=10% Similarity=0.116 Sum_probs=59.2
Q ss_pred ccEEEEe-eCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecC------CCce--------e--ccCCCCCcccCCceeE
Q 032929 19 TVFEWDQ-TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG------NPPY--------L--NHELTCPVKTDSSFWT 81 (130)
Q Consensus 19 ~~y~W~Q-t~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g------~~~~--------l--~g~L~~~I~~~~s~w~ 81 (130)
|++.-.+ +.+.+.|.+.|| |++++|++|.+..+.|.|+..- ...+ | .-.|...|+++. -+
T Consensus 35 p~~di~ee~~~~~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~ 111 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVA-GFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--AN 111 (137)
T ss_pred CcEEEEEcCCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CE
Confidence 7889884 899999999999 9999999999999999887641 1111 1 236778888873 88
Q ss_pred eeCCEEEEEEEeC
Q 032929 82 LEDDVMHITLTKR 94 (130)
Q Consensus 82 i~~~~l~i~L~K~ 94 (130)
+++|.|.|+|.|.
T Consensus 112 ~~dGVL~I~lPK~ 124 (137)
T PRK10743 112 LVNGLLYIDLERV 124 (137)
T ss_pred EeCCEEEEEEeCC
Confidence 9999999999986
No 36
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=97.22 E-value=0.0026 Score=41.79 Aligned_cols=69 Identities=16% Similarity=0.235 Sum_probs=55.4
Q ss_pred EEEeeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecCC-----Cce----e--ccCCCCCcccCCceeEee-CCEEEE
Q 032929 22 EWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN-----PPY----L--NHELTCPVKTDSSFWTLE-DDVMHI 89 (130)
Q Consensus 22 ~W~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g~-----~~~----l--~g~L~~~I~~~~s~w~i~-~~~l~i 89 (130)
.+..+.+.+.|.+.+| |++++|++|++.++.|.|+..-. ..+ | .-.|...|+++.-+-.+. +|.|.|
T Consensus 4 ~i~e~~~~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I 82 (86)
T cd06475 4 EIRQTADRWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTV 82 (86)
T ss_pred eEEEcCCeEEEEEECC-CCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEE
Confidence 4678999999999998 99999999999999999876521 111 2 236778888888888997 888888
Q ss_pred EE
Q 032929 90 TL 91 (130)
Q Consensus 90 ~L 91 (130)
+|
T Consensus 83 ~l 84 (86)
T cd06475 83 EA 84 (86)
T ss_pred Ee
Confidence 76
No 37
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.07 E-value=0.0019 Score=41.77 Aligned_cols=65 Identities=15% Similarity=0.250 Sum_probs=52.8
Q ss_pred CEEEEEEEcCCCCCCCceEEEEeccEEEEEecCC------C----ce-eccCCCCCcccCCceeEeeC-CEEEEEEEe
Q 032929 28 DEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN------P----PY-LNHELTCPVKTDSSFWTLED-DVMHITLTK 93 (130)
Q Consensus 28 ~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g~------~----~~-l~g~L~~~I~~~~s~w~i~~-~~l~i~L~K 93 (130)
+.+.|.+.|| |+.++|++|.+.++.|.|...-+ . .+ -.-.|...|+++..+-++.+ |.|.|.+.|
T Consensus 7 ~~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 7 EKFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred eeEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 5889999999 89999999999999999876411 0 11 23578899999988999998 899998865
No 38
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.02 E-value=0.012 Score=46.63 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=56.6
Q ss_pred eCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecCCCceeccCCCCCcccCCceeEeeC--CEEEEEE
Q 032929 26 TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLED--DVMHITL 91 (130)
Q Consensus 26 t~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g~~~~l~g~L~~~I~~~~s~w~i~~--~~l~i~L 91 (130)
..+.+.|+|.||.-.+.+++.+++.++.|.|.+.+..+.|+..|..+|+.+.+.-++.. +.|.|+|
T Consensus 259 ~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtl 326 (328)
T PF08190_consen 259 SPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKPKYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTL 326 (328)
T ss_pred CCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCCceEEEccCCCcccCCCceEEEccCCCEEEEEE
Confidence 46889999999965589999999999999999987546799999999999998766654 5788887
No 39
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=96.90 E-value=0.0083 Score=43.14 Aligned_cols=74 Identities=9% Similarity=0.152 Sum_probs=58.0
Q ss_pred CccEEEEe-eCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecC------CCce--------e--ccCCCCCcccCCcee
Q 032929 18 QTVFEWDQ-TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG------NPPY--------L--NHELTCPVKTDSSFW 80 (130)
Q Consensus 18 ~~~y~W~Q-t~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g------~~~~--------l--~g~L~~~I~~~~s~w 80 (130)
.|.+.=.+ +.+.+.|++.|| |++++|++|.+..+.|.|+... ...+ | .-.|...|+++ .-
T Consensus 32 ~P~vdI~e~~~~~y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A 108 (142)
T PRK11597 32 FPPYNIEKSDDNHYRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GA 108 (142)
T ss_pred CCcEEEEEcCCCEEEEEEEeC-CCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cC
Confidence 36777776 577899999999 9999999999999999997641 1111 1 23577788887 58
Q ss_pred EeeCCEEEEEEEeC
Q 032929 81 TLEDDVMHITLTKR 94 (130)
Q Consensus 81 ~i~~~~l~i~L~K~ 94 (130)
++++|.|.|+|.|.
T Consensus 109 ~~~nGVL~I~lPK~ 122 (142)
T PRK11597 109 TFVNGLLHIDLIRN 122 (142)
T ss_pred EEcCCEEEEEEecc
Confidence 89999999999886
No 40
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=96.78 E-value=0.0076 Score=39.34 Aligned_cols=67 Identities=10% Similarity=0.157 Sum_probs=52.9
Q ss_pred eCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecC------CCce---e--ccCCCCCcccCCceeEee-CCEEEEEEEe
Q 032929 26 TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG------NPPY---L--NHELTCPVKTDSSFWTLE-DDVMHITLTK 93 (130)
Q Consensus 26 t~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g------~~~~---l--~g~L~~~I~~~~s~w~i~-~~~l~i~L~K 93 (130)
..+...|.+.+| |+++.|++|++..+.|.|+..- ...+ | .-.|...|+++.-+-++. +|.|.|+|-|
T Consensus 5 ~~d~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 5 EDDKYQVFLDVC-HFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred cCCeEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence 457788999998 9999999999999999987641 1111 2 236888999999999996 8999998854
No 41
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=96.48 E-value=0.013 Score=38.43 Aligned_cols=65 Identities=9% Similarity=0.243 Sum_probs=51.0
Q ss_pred eCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecC------C-Cce------e--ccCCCCCcccCCceeEe-eCCEEEE
Q 032929 26 TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG------N-PPY------L--NHELTCPVKTDSSFWTL-EDDVMHI 89 (130)
Q Consensus 26 t~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g------~-~~~------l--~g~L~~~I~~~~s~w~i-~~~~l~i 89 (130)
..+.+.|.+.+| |++++|+.|++..+.|.|+..- + ..+ | .-.|...|+++.-.-.+ .+|.|.|
T Consensus 5 ~~d~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I 83 (87)
T cd06481 5 GKEGFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHI 83 (87)
T ss_pred ccceEEEEEECC-CCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEE
Confidence 467889999998 8999999999999999997640 0 011 1 24688899999888899 7888888
Q ss_pred EE
Q 032929 90 TL 91 (130)
Q Consensus 90 ~L 91 (130)
.+
T Consensus 84 ~~ 85 (87)
T cd06481 84 RA 85 (87)
T ss_pred Ec
Confidence 76
No 42
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=95.93 E-value=0.069 Score=34.88 Aligned_cols=66 Identities=8% Similarity=0.118 Sum_probs=50.9
Q ss_pred eeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecC-----CCce----e--ccCCCCCcccCCceeEe-eCCEEEEEE
Q 032929 25 QTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKG-----NPPY----L--NHELTCPVKTDSSFWTL-EDDVMHITL 91 (130)
Q Consensus 25 Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g-----~~~~----l--~g~L~~~I~~~~s~w~i-~~~~l~i~L 91 (130)
.+.+...|.+.|| |+++.|++|++..+.|.|+..- +.-+ | .-.|...|+++.-+-++ .+|.|.|.-
T Consensus 4 e~~~~~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~ 81 (83)
T cd06477 4 EGKPMFQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVET 81 (83)
T ss_pred cCCceEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEEe
Confidence 3567899999998 9999999999999999997641 1112 2 23688899999888887 688877753
No 43
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=95.36 E-value=0.12 Score=34.12 Aligned_cols=64 Identities=11% Similarity=0.205 Sum_probs=49.0
Q ss_pred eCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecCC------C--ce----e--ccCCCCCcccCCceeEeeCC-EEEEE
Q 032929 26 TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGN------P--PY----L--NHELTCPVKTDSSFWTLEDD-VMHIT 90 (130)
Q Consensus 26 t~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g~------~--~~----l--~g~L~~~I~~~~s~w~i~~~-~l~i~ 90 (130)
..+.+.|++.|| |++++|++|++..+.|.|+..-. . -+ | .-.|...|+++.-+-++.++ .|.|.
T Consensus 6 ~~~~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~ 84 (87)
T cd06482 6 DSSNVLASVDVC-GFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIE 84 (87)
T ss_pred cCCEEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEe
Confidence 467899999999 99999999999999999976410 0 01 2 23677889998888888876 66653
No 44
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=95.28 E-value=0.17 Score=37.74 Aligned_cols=69 Identities=13% Similarity=0.297 Sum_probs=50.0
Q ss_pred eeCC-EEEEEEEcCCCCCCCc-eEEEEec--cEEEEEecCCCceeccCCCCCcccCCceeEeeCCEEEEEEEeCCC
Q 032929 25 QTLD-EINIYINLPPNVHSKQ-FYCKIQS--KHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKRDK 96 (130)
Q Consensus 25 Qt~~-~V~i~i~lp~~~~~kd-v~V~~~~--~~l~v~v~g~~~~l~g~L~~~I~~~~s~w~i~~~~l~i~L~K~~~ 96 (130)
+..+ ++.|...|| ++...+ ++|.+.. ..|.+.+.+. .+-...|..+ .++-..+++..+.|+|.|++.++
T Consensus 98 e~dDge~~VvAdLP-GVs~dd~idV~l~~d~~~L~i~~~~~-~~krv~L~~~-~~e~~~~t~nNgILEIri~~~~~ 170 (177)
T PF05455_consen 98 ERDDGELVVVADLP-GVSDDDAIDVTLDDDEGALTIRVGEK-YLKRVALPWP-DPEITSATFNNGILEIRIRRTEE 170 (177)
T ss_pred ecCCCcEEEEEeCC-CCCcccceeeEeecCCceEEEecCCc-eEeeEecCCC-ccceeeEEEeCceEEEEEeecCC
Confidence 3455 689999999 776566 8888874 4556655554 4544567777 46666899999999999999765
No 45
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=90.85 E-value=1.9 Score=28.64 Aligned_cols=65 Identities=14% Similarity=0.229 Sum_probs=48.1
Q ss_pred eCCEEEEEEEcCCCCCCCceEEEEeccEEEEEec-C----CCce----e--ccCCCCCcccCCceeEee-CCEEEEEE
Q 032929 26 TLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK-G----NPPY----L--NHELTCPVKTDSSFWTLE-DDVMHITL 91 (130)
Q Consensus 26 t~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~-g----~~~~----l--~g~L~~~I~~~~s~w~i~-~~~l~i~L 91 (130)
+.+.-.|.+.+. +.++.|+.|++..+.|.|..+ . +.-+ | .-.|...|+++.-+-.+. +|.|.|.+
T Consensus 13 ~~~~f~v~ldv~-gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 13 SSEPWKVCVNVH-SFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred CCCcEEEEEEeC-CCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 445567888876 899999999999999999764 1 1112 1 236888899998888888 67888764
No 46
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.79 E-value=1.7 Score=36.51 Aligned_cols=83 Identities=14% Similarity=0.199 Sum_probs=59.4
Q ss_pred CccEEEEeeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecCCCceeccCCCCCcccCCc---eeEeeCCEEEEEEEeC
Q 032929 18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSS---FWTLEDDVMHITLTKR 94 (130)
Q Consensus 18 ~~~y~W~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g~~~~l~g~L~~~I~~~~s---~w~i~~~~l~i~L~K~ 94 (130)
+|.|.=+|..+.+++.|+.| -..++.+.+....+.+.+.+. +.++...+.+.+..++. .+-..++.++|.+-|.
T Consensus 3 tp~f~itqdee~~~L~I~~p-~~~a~~le~~a~~nm~~f~~~--pyflrl~~p~~~~~d~~~n~s~d~kd~~~~vK~~K~ 79 (466)
T KOG3247|consen 3 TPQFAITQDEEFCTLIIPRP-LNQASKLEIDAAANMASFSAG--PYFLRLAGPGMVEDDARPNASYDAKDGYAHVKVPKF 79 (466)
T ss_pred CceeeeeecCceEEEEeecc-ccchhccchhhHhhhhhhccc--hhHHhhcCcchhhhhccccCccccccceeEEeecCC
Confidence 47788899999999999998 445666777777776666663 34566777777766554 3455668899999887
Q ss_pred CCCCCcCCc
Q 032929 95 DKGQTWASP 103 (130)
Q Consensus 95 ~~~~~W~~L 103 (130)
.+++.-+.|
T Consensus 80 ~~~e~F~~L 88 (466)
T KOG3247|consen 80 HPGEHFSDL 88 (466)
T ss_pred Cccccccch
Confidence 776555443
No 47
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=75.49 E-value=6.6 Score=28.48 Aligned_cols=68 Identities=16% Similarity=0.148 Sum_probs=45.2
Q ss_pred CccEEEEeeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEecCCCceeccCCCCCcccCCceeEeeCCEE--EEEEE
Q 032929 18 QTVFEWDQTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVM--HITLT 92 (130)
Q Consensus 18 ~~~y~W~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g~~~~l~g~L~~~I~~~~s~w~i~~~~l--~i~L~ 92 (130)
.++|..+......+++|+ ++ -+..+-++++++.|-+.|+ +..+.--.-+.++.+.|++.+|.+ ++.+-
T Consensus 60 ~i~~~~~~g~~t~t~yiK---Nt--G~~~~~fd~~sitVliDG~--iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn 129 (154)
T COG3354 60 QIPYVGTDGPYTYTFYIK---NT--GSDSIAFDNTSITVLIDGN--IVTPAYVTFTSVNGSSIRLSPGQVGREVTVN 129 (154)
T ss_pred CCccccCCCceEEEEEEe---cC--CCcccccCCCeEEEEEcCc--EeccceEEEEecCCCeeEecCCceeeEEEec
Confidence 456776666666666664 33 2346788899999999885 444444445678889999887642 45443
No 48
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=61.17 E-value=29 Score=21.29 Aligned_cols=34 Identities=9% Similarity=0.302 Sum_probs=28.9
Q ss_pred eeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEe
Q 032929 25 QTLDEINIYINLPPNVHSKQFYCKIQSKHIELGI 58 (130)
Q Consensus 25 Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v 58 (130)
.......-.|+||.+++.+.++..+...-|.|.+
T Consensus 53 ~~~~~f~r~~~LP~~vd~~~i~a~~~~G~L~I~~ 86 (88)
T cd06464 53 RSYGSFSRSFRLPEDVDPDKIKASLENGVLTITL 86 (88)
T ss_pred EeCcEEEEEEECCCCcCHHHcEEEEeCCEEEEEE
Confidence 3467788899999999999999999998888765
No 49
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=61.17 E-value=18 Score=27.11 Aligned_cols=76 Identities=14% Similarity=0.332 Sum_probs=53.1
Q ss_pred cEEE--EeeCCEEEEEEEcCCCCCCCceEEEEeccE-EEEEecCCC-------------------ce-eccCCCCCcccC
Q 032929 20 VFEW--DQTLDEINIYINLPPNVHSKQFYCKIQSKH-IELGIKGNP-------------------PY-LNHELTCPVKTD 76 (130)
Q Consensus 20 ~y~W--~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~-l~v~v~g~~-------------------~~-l~g~L~~~I~~~ 76 (130)
...| .++.+...+.+.+| |+.+.+++|.+.... +.++-.... .+ -...|..+++.+
T Consensus 84 ~~~~~v~e~~~~~~~~~~~P-gl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d 162 (196)
T KOG0710|consen 84 RVPWDVKESPDAHEFKVDLP-GLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVD 162 (196)
T ss_pred cCCcccccCCCceEEEeeCC-CCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHH
Confidence 5677 68999999999999 677999999999885 555432100 01 123566666666
Q ss_pred CceeEeeCCEEEEEEEeCCC
Q 032929 77 SSFWTLEDDVMHITLTKRDK 96 (130)
Q Consensus 77 ~s~w~i~~~~l~i~L~K~~~ 96 (130)
.=.-.+.+|.|.|.+.|..+
T Consensus 163 ~ikA~~~nGVL~VvvpK~~~ 182 (196)
T KOG0710|consen 163 EIKAEMENGVLTVVVPKLEP 182 (196)
T ss_pred HHHHHhhCCeEEEEEecccc
Confidence 55666677888999988754
No 50
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=57.02 E-value=33 Score=19.92 Aligned_cols=32 Identities=16% Similarity=0.338 Sum_probs=26.4
Q ss_pred CCEEEEEEEcCCCCCCCceEEEEeccEEEEEe
Q 032929 27 LDEINIYINLPPNVHSKQFYCKIQSKHIELGI 58 (130)
Q Consensus 27 ~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v 58 (130)
.......+.||..+.+..+...+.++.|.|.+
T Consensus 47 ~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l 78 (80)
T cd00298 47 YGEFERSFELPEDVDPEKSKASLENGVLEITL 78 (80)
T ss_pred eeeEEEEEECCCCcCHHHCEEEEECCEEEEEE
Confidence 46678888899999888899999888887765
No 51
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=49.31 E-value=45 Score=20.29 Aligned_cols=31 Identities=10% Similarity=0.133 Sum_probs=26.5
Q ss_pred EEEEEEEcCCCCCCCceEEEEeccEEEEEec
Q 032929 29 EINIYINLPPNVHSKQFYCKIQSKHIELGIK 59 (130)
Q Consensus 29 ~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~ 59 (130)
...+.++++..+++.+....+.+..|.|.+.
T Consensus 37 ~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~ 67 (78)
T cd06469 37 PYLFELDLAAPIDDEKSSAKIGNGVLVFTLV 67 (78)
T ss_pred CEEEEEeCcccccccccEEEEeCCEEEEEEE
Confidence 4567789999999999999999998888875
No 52
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=47.71 E-value=44 Score=20.98 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=26.4
Q ss_pred CEEEEEEEcCCCCCCCceEEEEec-cEEEEEe
Q 032929 28 DEINIYINLPPNVHSKQFYCKIQS-KHIELGI 58 (130)
Q Consensus 28 ~~V~i~i~lp~~~~~kdv~V~~~~-~~l~v~v 58 (130)
....-+|.||.+++.+.++..+.. .-|.|.+
T Consensus 50 ~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~ 81 (83)
T cd06526 50 REFTRRYQLPEGVDPDSVTSSLSSDGVLTIEA 81 (83)
T ss_pred EEEEEEEECCCCCChHHeEEEeCCCcEEEEEe
Confidence 567889999999999999999987 7777765
No 53
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=46.02 E-value=35 Score=21.95 Aligned_cols=35 Identities=14% Similarity=0.279 Sum_probs=26.5
Q ss_pred eeCCEEEEEEEcCCCCCCCceEEEEeccEEEEEec
Q 032929 25 QTLDEINIYINLPPNVHSKQFYCKIQSKHIELGIK 59 (130)
Q Consensus 25 Qt~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~ 59 (130)
.+.....-+|+||.+++.+.+...+...-|.|.+.
T Consensus 52 ~~~~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~~p 86 (102)
T PF00011_consen 52 RRYGSFERSIRLPEDVDPDKIKASYENGVLTITIP 86 (102)
T ss_dssp S-SEEEEEEEE-STTB-GGG-EEEETTSEEEEEEE
T ss_pred cccceEEEEEcCCCcCCcceEEEEecCCEEEEEEE
Confidence 35567788999999999999999998888888875
No 54
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=41.48 E-value=1.4e+02 Score=21.95 Aligned_cols=67 Identities=19% Similarity=0.258 Sum_probs=48.6
Q ss_pred CEEEEEEEcCCCCCCCceEEEEeccEEEEEec-CCC----ce----e--ccCCCCCcccCCceeEeeC-CEEEEEEEeCC
Q 032929 28 DEINIYINLPPNVHSKQFYCKIQSKHIELGIK-GNP----PY----L--NHELTCPVKTDSSFWTLED-DVMHITLTKRD 95 (130)
Q Consensus 28 ~~V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~-g~~----~~----l--~g~L~~~I~~~~s~w~i~~-~~l~i~L~K~~ 95 (130)
+...|.+++. ...+.++.|+..++.|.|..+ ++. -+ | .-.|...||++.-+=+|.. |.|.|.-.|..
T Consensus 72 ~~F~V~lDV~-~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~ 150 (173)
T KOG3591|consen 72 DKFEVNLDVH-QFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPP 150 (173)
T ss_pred CcEEEEEEcc-cCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceEEEEccCCC
Confidence 3456666665 678999999999998888765 110 11 2 2379999999987778875 68899887764
No 55
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=37.73 E-value=17 Score=25.09 Aligned_cols=28 Identities=7% Similarity=0.291 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCCCCceEEEEeccEEEEEecCC
Q 032929 30 INIYINLPPNVHSKQFYCKIQSKHIELGIKGN 61 (130)
Q Consensus 30 V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g~ 61 (130)
+.+.|.+| +..|+|++.|+...|.+..+
T Consensus 84 ~~L~i~i~----p~~vDVNVHP~K~eV~f~~e 111 (127)
T cd03483 84 VYLSLEIP----PENVDVNVHPTKREVHFLNE 111 (127)
T ss_pred EEEEEEeC----hHHeeeccCCCccEEEecCH
Confidence 45666665 56788889998888888765
No 56
>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition.
Probab=36.29 E-value=31 Score=23.86 Aligned_cols=29 Identities=10% Similarity=0.125 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCCCCceEEEEeccEEEEEecCCC
Q 032929 30 INIYINLPPNVHSKQFYCKIQSKHIELGIKGNP 62 (130)
Q Consensus 30 V~i~i~lp~~~~~kdv~V~~~~~~l~v~v~g~~ 62 (130)
..|.|.+| +..|+|++.|+...|.+..+.
T Consensus 89 ~~L~i~~~----~~~vDVNVhP~K~eV~f~~e~ 117 (132)
T cd03485 89 FFLNILCP----PGLVDVNIEPDKDDVLLQNKE 117 (132)
T ss_pred EEEEEEcC----CCceeeccCCccCEEEEcChH
Confidence 56666666 456999999999888887653
No 57
>COG1470 Predicted membrane protein [Function unknown]
Probab=30.86 E-value=75 Score=27.48 Aligned_cols=24 Identities=13% Similarity=0.389 Sum_probs=17.9
Q ss_pred CEEEEEEEcCCCCCCCceEEEEec
Q 032929 28 DEINIYINLPPNVHSKQFYCKIQS 51 (130)
Q Consensus 28 ~~V~i~i~lp~~~~~kdv~V~~~~ 51 (130)
.+|.++|.+|+++.+-|..|.|+.
T Consensus 444 ~tV~ltI~vP~~a~aGdY~i~i~~ 467 (513)
T COG1470 444 KTVSLTITVPEDAGAGDYRITITA 467 (513)
T ss_pred ceEEEEEEcCCCCCCCcEEEEEEE
Confidence 457788888888887777777754
No 58
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=30.61 E-value=88 Score=23.51 Aligned_cols=49 Identities=16% Similarity=0.321 Sum_probs=36.0
Q ss_pred CCceeEeeC-CEEEEE---EEeCC-CCCCcCCccCCCCCCCHHhHHHHHHhhhhh
Q 032929 76 DSSFWTLED-DVMHIT---LTKRD-KGQTWASPIMGQGQLDPYVTDQEQKRLMLQ 125 (130)
Q Consensus 76 ~~s~w~i~~-~~l~i~---L~K~~-~~~~W~~L~~~~~~id~~~~~~~~~rl~l~ 125 (130)
.-|+|-+.+ |.|.|+ ++|+. + ..|..=+.|.|....+..+++++|+..|
T Consensus 35 AFS~~lFne~g~LLltrRA~~K~twP-~vWTNSvCsHP~~~es~~~A~~rRl~~E 88 (185)
T COG1443 35 AFSSFLFNERGQLLLTRRALSKKTWP-GVWTNSVCSHPLPGESNEDAARRRLAYE 88 (185)
T ss_pred hhheeEECCCCceeeehhhhhcccCc-ccccccccCCCcCCCchHHHHHHHHHHH
Confidence 347888876 678887 44443 3 2566667788988899999999999876
No 59
>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue. Laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components []. Each laminin is a heterotrimer assembled from alpha, beta and gamma chain subunits, secreted and incorporated into cell-associated extracellular matrices []. Basement membrane assembly is a cooperative process in which laminins polymerise through their N-terminal domain (LN or domain VI) and anchor to the cell surface through their G domains. Netrins may also associate with this network through heterotypic LN domain interactions []. This leads to cell signalling through integrins and dystroglycan (and possibly other receptors) recruited to the adherent laminin. This LN domain dependent self-assembly is considered to be crucial for the integrity of basement membranes, as highlighted by genetic forms of muscular dystrophy containing the deletion of the LN module from the alpha 2 laminin chain []. The laminin N-terminal domain is found in all laminin and netrin subunits except laminin alpha 3A, alpha 4 and gamma 2. ; PDB: 3TBD_A 3ZYG_B 3ZYI_B 3ZYJ_D 2Y38_A.
Probab=28.75 E-value=38 Score=26.16 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=12.0
Q ss_pred ccEEEEeeC--------CEEEEEEEcCC
Q 032929 19 TVFEWDQTL--------DEINIYINLPP 38 (130)
Q Consensus 19 ~~y~W~Qt~--------~~V~i~i~lp~ 38 (130)
..-+|-|+. ..|+|+++|.+
T Consensus 67 ~~~TwWQS~~~~~g~~~~~VtitLdL~~ 94 (237)
T PF00055_consen 67 NNSTWWQSETLQNGVQYENVTITLDLGK 94 (237)
T ss_dssp TB---EEB--STTTTSTT-EEEEEEEEE
T ss_pred ccCceecCCccCCCCcCcceEEEEcccc
Confidence 348999999 68999999864
No 60
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=27.80 E-value=1e+02 Score=21.34 Aligned_cols=30 Identities=23% Similarity=0.266 Sum_probs=17.2
Q ss_pred CCEEEEEEEcCCCCCCCceEEEEeccEEEE
Q 032929 27 LDEINIYINLPPNVHSKQFYCKIQSKHIEL 56 (130)
Q Consensus 27 ~~~V~i~i~lp~~~~~kdv~V~~~~~~l~v 56 (130)
.....++|.||++.+-+++++......+.+
T Consensus 117 ~~~~~i~I~lP~~~~l~~i~i~~~~G~i~i 146 (166)
T PF13349_consen 117 DNKSKITIYLPKDYKLDKIDIKTSSGDITI 146 (166)
T ss_pred CCCcEEEEEECCCCceeEEEEEeccccEEE
Confidence 445566666666554456666665555544
No 61
>PF15060 PPDFL: Differentiation and proliferation regulator
Probab=27.35 E-value=25 Score=24.23 Aligned_cols=20 Identities=40% Similarity=0.626 Sum_probs=16.2
Q ss_pred EEEEeCCCCCCcCCccCCCC
Q 032929 89 ITLTKRDKGQTWASPIMGQG 108 (130)
Q Consensus 89 i~L~K~~~~~~W~~L~~~~~ 108 (130)
-=|.|+.++.||.++|-+.+
T Consensus 44 pGLpkad~g~WW~sfFF~k~ 63 (110)
T PF15060_consen 44 PGLPKADPGHWWASFFFGKS 63 (110)
T ss_pred cCccccCCCcceEEeEeccc
Confidence 45889889999998887764
No 62
>smart00136 LamNT Laminin N-terminal domain (domain VI). N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.
Probab=26.71 E-value=65 Score=24.96 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=15.6
Q ss_pred cEEEEeeCC------EEEEEEEcCC
Q 032929 20 VFEWDQTLD------EINIYINLPP 38 (130)
Q Consensus 20 ~y~W~Qt~~------~V~i~i~lp~ 38 (130)
..+|.|+.. .|+|++.|-+
T Consensus 72 ~~TwWQS~~~~~~~~~VtitLdL~k 96 (238)
T smart00136 72 NPTWWQSEPLSNGPQNVNLTLDLGK 96 (238)
T ss_pred CCceecCCCcCCCCccEEEEEecCC
Confidence 568999987 5999999864
No 63
>cd01737 LSm16_N LSm16 belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold, containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet, that associates with other Sm proteins to form hexameric and heptameric ring structures. LSm16 has, in addition to its N-terminal Sm-like domain, a C-terminal Yjef_N-type rossman fold domain of unknown function.
Probab=26.19 E-value=87 Score=19.32 Aligned_cols=29 Identities=14% Similarity=0.101 Sum_probs=22.1
Q ss_pred EeeCCEEEEEEEcCCCCCCCceEEEEecc
Q 032929 24 DQTLDEINIYINLPPNVHSKQFYCKIQSK 52 (130)
Q Consensus 24 ~Qt~~~V~i~i~lp~~~~~kdv~V~~~~~ 52 (130)
+|+.-.|.++.++..++++..+.|+|.-.
T Consensus 28 ~~~~qTI~l~~~~~ngik~~~~EVt~~~~ 56 (62)
T cd01737 28 DQESQTISLAFPFHNGVKCLVPEVTFRAG 56 (62)
T ss_pred CccceEEEEeecccCCccccCceEEEEEc
Confidence 45666688888888888888888888643
No 64
>PF11869 DUF3389: Protein of unknown function (DUF3389); InterPro: IPR021811 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=25.62 E-value=1.2e+02 Score=19.42 Aligned_cols=43 Identities=7% Similarity=0.217 Sum_probs=23.6
Q ss_pred CCCceEEEEeccEEEEEecCC-CceeccCCCCCcccCCceeEee
Q 032929 41 HSKQFYCKIQSKHIELGIKGN-PPYLNHELTCPVKTDSSFWTLE 83 (130)
Q Consensus 41 ~~kdv~V~~~~~~l~v~v~g~-~~~l~g~L~~~I~~~~s~w~i~ 83 (130)
++.++.|.+...++.+...-+ -.++.|.+-=.-+..++.|++.
T Consensus 13 t~~Ev~vrL~~~~vtLqA~~D~I~li~~anvi~A~g~~vkWSik 56 (75)
T PF11869_consen 13 TPHEVVVRLNGSHVTLQAQVDDITLIGGANVIIANGGEVKWSIK 56 (75)
T ss_pred cceEEEEEECCCcEEEEEeeeehhhcCCCcEEEEeCcceEEEEE
Confidence 566778888777655544321 1233332222235566788875
No 65
>PHA03324 nuclear egress membrane protein UL34; Provisional
Probab=21.42 E-value=2.4e+02 Score=22.08 Aligned_cols=43 Identities=9% Similarity=0.200 Sum_probs=31.4
Q ss_pred cEEEEEecCCCceeccCCCCCcccCCceeEeeCCEEEEEEEeC
Q 032929 52 KHIELGIKGNPPYLNHELTCPVKTDSSFWTLEDDVMHITLTKR 94 (130)
Q Consensus 52 ~~l~v~v~g~~~~l~g~L~~~I~~~~s~w~i~~~~l~i~L~K~ 94 (130)
-.|.|.-.|..+++.|-++.+-+.-...|+.+.+.+.+.-.|.
T Consensus 71 pylRIQNTGvSVLfqG~Ftrp~~ap~~a~ta~~nnViLaSt~S 113 (274)
T PHA03324 71 AWLRIQNTGQAVIVAGCFTKNAHCGDQIWEAPAPTISLAAAKS 113 (274)
T ss_pred ceEEEecCceEEEEEeeecCCCCCCcceeecCCCceEeeechh
Confidence 3444444455567889899999998999999988766665554
No 66
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=20.85 E-value=78 Score=26.58 Aligned_cols=28 Identities=11% Similarity=0.399 Sum_probs=22.8
Q ss_pred eecCCccEEEEeeCCEEEEEEEcCCCCC
Q 032929 14 LHNGQTVFEWDQTLDEINIYINLPPNVH 41 (130)
Q Consensus 14 ~~~g~~~y~W~Qt~~~V~i~i~lp~~~~ 41 (130)
+-.|.....|.++...+.++|.+|.+++
T Consensus 477 T~~G~I~v~w~~~~g~~~l~v~vP~~t~ 504 (509)
T PF05592_consen 477 TPYGEISVSWKREDGKLTLEVTVPAGTT 504 (509)
T ss_dssp ETTCEEEEEEEEETTEEEEEEEEETTSE
T ss_pred CCCceEEEEEEEeCCEEEEEEEeCCCCE
Confidence 3445668999999999999999998774
Done!