BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032933
(130 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P23326|RK35_SPIOL 50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea
GN=RPL35 PE=1 SV=1
Length = 159
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/54 (92%), Positives = 53/54 (98%)
Query: 74 TVFAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMV 127
TVFAAKGYKMKTHKASAKRFRVTGKGKI+RRRAGKQHLLAKKNTKRK RLSK++
Sbjct: 83 TVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLI 136
>sp|A8LE32|RL35_FRASN 50S ribosomal protein L35 OS=Frankia sp. (strain EAN1pec) GN=rpmI
PE=3 SV=1
Length = 64
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 32/46 (69%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMV 127
KMKTH + KRFRVTG GKI+RRRA + HLL K ++R RL V
Sbjct: 3 KMKTHTGTGKRFRVTGTGKIMRRRANRAHLLEHKTSRRTRRLYDEV 48
>sp|Q2JI03|RL35_SYNJB 50S ribosomal protein L35 OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=rpmI PE=3 SV=1
Length = 66
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLS 124
K+KT KA+AKRFR+TG GK +RRRAG HLL K +KRK +L+
Sbjct: 3 KIKTRKAAAKRFRLTGSGKFMRRRAGHNHLLEHKTSKRKRKLA 45
>sp|B2J0D1|RL35_NOSP7 50S ribosomal protein L35 OS=Nostoc punctiforme (strain ATCC 29133
/ PCC 73102) GN=rpmI PE=3 SV=1
Length = 65
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 35/44 (79%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSK 125
K+KT KA+AKRFR TG GKI+RR+AGK HLL K++ +K +SK
Sbjct: 3 KLKTRKAAAKRFRATGTGKIVRRKAGKSHLLEHKSSDKKRSMSK 46
>sp|Q8YRL9|RL35_NOSS1 50S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=rpmI PE=3 SV=1
Length = 65
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 34/45 (75%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKM 126
K+KT KA+AKRFR TG GKI+RR+A K HLL K T +K + SKM
Sbjct: 3 KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKM 47
>sp|Q3M7I2|RL35_ANAVT 50S ribosomal protein L35 OS=Anabaena variabilis (strain ATCC 29413
/ PCC 7937) GN=rpmI PE=3 SV=1
Length = 65
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 34/45 (75%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKM 126
K+KT KA+AKRFR TG GKI+RR+A K HLL K T +K + SKM
Sbjct: 3 KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKM 47
>sp|A9KHG8|RL35_CLOPH 50S ribosomal protein L35 OS=Clostridium phytofermentans (strain
ATCC 700394 / DSM 18823 / ISDg) GN=rpmI PE=3 SV=1
Length = 65
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 38/49 (77%), Gaps = 2/49 (4%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKN--TKRKLRLSKMVS 128
K+KT KA+AKRF+VTG GK+ R +AGKQH+L KK+ TKR LR + M+
Sbjct: 3 KLKTSKAAAKRFKVTGTGKLKRMKAGKQHILTKKSQKTKRNLRKATMMD 51
>sp|B5YLD0|RL35_THEYD 50S ribosomal protein L35 OS=Thermodesulfovibrio yellowstonii
(strain ATCC 51303 / DSM 11347 / YP87) GN=rpmI PE=3 SV=1
Length = 66
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKR 119
K+KTH+ +AKRF+VTG GKI+RRRA K HLL K +KR
Sbjct: 3 KLKTHRGAAKRFKVTGTGKIMRRRANKSHLLTGKPSKR 40
>sp|Q2JR50|RL35_SYNJA 50S ribosomal protein L35 OS=Synechococcus sp. (strain JA-3-3Ab)
GN=rpmI PE=3 SV=1
Length = 66
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLS 124
K+KT KA+AKRFR+TG GK +RRRAG HLL K + RK +L+
Sbjct: 3 KIKTRKAAAKRFRLTGSGKFMRRRAGHNHLLEHKTSNRKRKLA 45
>sp|B2A5P0|RL35_NATTJ 50S ribosomal protein L35 OS=Natranaerobius thermophilus (strain
ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rpmI PE=3
SV=1
Length = 64
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 33/44 (75%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSK 125
KMKTHK +AKRF+ TGKGKI RR+A K H+L KK KRK L K
Sbjct: 3 KMKTHKGAAKRFKKTGKGKIKRRKAFKSHILTKKTPKRKRNLRK 46
>sp|Q5N5F4|RL35_SYNP6 50S ribosomal protein L35 OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=rpmI PE=3 SV=1
Length = 66
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 34/44 (77%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSK 125
K+KT KA+AKRFR++G GK +RR+A K HLL KN R+ RLS+
Sbjct: 3 KLKTRKAAAKRFRISGNGKAIRRKAFKNHLLQHKNATRRRRLSQ 46
>sp|Q31NR1|RL35_SYNE7 50S ribosomal protein L35 OS=Synechococcus elongatus (strain PCC
7942) GN=rpmI PE=3 SV=1
Length = 66
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 34/44 (77%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSK 125
K+KT KA+AKRFR++G GK +RR+A K HLL KN R+ RLS+
Sbjct: 3 KLKTRKAAAKRFRISGNGKAIRRKAFKNHLLQHKNATRRRRLSQ 46
>sp|Q7NGV2|RL35_GLOVI 50S ribosomal protein L35 OS=Gloeobacter violaceus (strain PCC
7421) GN=rpmI PE=3 SV=1
Length = 65
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 33/48 (68%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMVSF 129
KMKT +++AKR+ VTG GK+ RRRAGK HLL K+ RK LS V
Sbjct: 3 KMKTRQSAAKRYEVTGSGKLRRRRAGKNHLLQHKSAARKRSLSTKVEV 50
>sp|Q1AWG2|RL35_RUBXD 50S ribosomal protein L35 OS=Rubrobacter xylanophilus (strain DSM
9941 / NBRC 16129) GN=rpmI PE=3 SV=1
Length = 65
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLS 124
KMKTHK +A RF V +GK+ RRRAG H+L KK +KRK RL+
Sbjct: 3 KMKTHKGAAGRFEVMKRGKLRRRRAGHNHILEKKTSKRKRRLN 45
>sp|Q8DH01|RL35_THEEB 50S ribosomal protein L35 OS=Thermosynechococcus elongatus (strain
BP-1) GN=rpmI PE=3 SV=1
Length = 65
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLS 124
K+KT +A+AKRFR TG GK +RR+A K HLL K + RK RLS
Sbjct: 3 KLKTRRAAAKRFRTTGSGKFVRRKANKNHLLEHKGSDRKNRLS 45
>sp|B8HPI6|RL35_CYAP4 50S ribosomal protein L35 OS=Cyanothece sp. (strain PCC 7425 / ATCC
29141) GN=rpmI PE=3 SV=1
Length = 65
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMV 127
K+KT KA+AKRFR TG GK RR+A + HLL K+T RK +LS M
Sbjct: 3 KLKTRKAAAKRFRQTGTGKFTRRKANRNHLLEHKSTARKNKLSHMA 48
>sp|A5GQ04|RL35_SYNR3 50S ribosomal protein L35 OS=Synechococcus sp. (strain RCC307)
GN=rpmI PE=3 SV=1
Length = 66
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 32/45 (71%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKM 126
K+KT +A+AKRFRVTG GK +RRRA HLL K+ KRK L M
Sbjct: 3 KLKTRRAAAKRFRVTGSGKFMRRRAFHNHLLDHKSPKRKRYLGTM 47
>sp|Q2RYT6|RL35_SALRD 50S ribosomal protein L35 OS=Salinibacter ruber (strain DSM 13855 /
M31) GN=rpmI PE=3 SV=2
Length = 65
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 33/46 (71%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMV 127
KMK+H + KRF+ TG GKI R++A K HLL KKN KRK +L K V
Sbjct: 3 KMKSHSGAKKRFKKTGNGKIKRKKANKGHLLTKKNAKRKRQLRKSV 48
>sp|A0LUD0|RL35_ACIC1 50S ribosomal protein L35 OS=Acidothermus cellulolyticus (strain
ATCC 43068 / 11B) GN=rpmI PE=3 SV=1
Length = 64
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 31/46 (67%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMV 127
K KTH + KRFRVTG GK++RRRA + HLL K ++R RL V
Sbjct: 3 KFKTHTGAGKRFRVTGTGKLMRRRANRNHLLEHKPSRRTRRLWNEV 48
>sp|Q0SI46|RL35_RHOSR 50S ribosomal protein L35 OS=Rhodococcus sp. (strain RHA1) GN=rpmI
PE=3 SV=1
Length = 64
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLS 124
K KTH +AKRF+V+G GKILR++AG++HLL K TK RL
Sbjct: 3 KSKTHSGTAKRFKVSGSGKILRQKAGRRHLLEHKATKVTRRLD 45
>sp|C1AT08|RL35_RHOOB 50S ribosomal protein L35 OS=Rhodococcus opacus (strain B4) GN=rpmI
PE=3 SV=1
Length = 64
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLS 124
K KTH +AKRF+V+G GKILR++AG++HLL K TK RL
Sbjct: 3 KSKTHSGTAKRFKVSGSGKILRQKAGRRHLLEHKATKVTRRLD 45
>sp|A9BDA5|RL35_PROM4 50S ribosomal protein L35 OS=Prochlorococcus marinus (strain MIT
9211) GN=rpmI PE=3 SV=1
Length = 65
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLS 124
K+KT KA+AKRF+VTG GK +RRRA + HLL K+TK K L+
Sbjct: 3 KLKTRKAAAKRFKVTGTGKFMRRRAFRNHLLDHKSTKLKRHLA 45
>sp|P14810|RK35_CYAPA 50S ribosomal protein L35, cyanelle OS=Cyanophora paradoxa GN=rpl35
PE=3 SV=1
Length = 65
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 36/47 (76%)
Query: 81 YKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMV 127
YK+KT KA+AKR++ G KI RR+A + HLL KK+T RK +LS++V
Sbjct: 2 YKLKTRKAAAKRYKAVGNKKISRRKAFRSHLLQKKSTNRKRQLSQVV 48
>sp|B7K4V5|RL35_CYAP8 50S ribosomal protein L35 OS=Cyanothece sp. (strain PCC 8801)
GN=rpmI PE=3 SV=1
Length = 67
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 33/42 (78%), Gaps = 1/42 (2%)
Query: 82 KMKTHKASAKRFRVTGKG-KILRRRAGKQHLLAKKNTKRKLR 122
K+KT KA+AKRFRVTG G KI RR+A K HLL K+++RK R
Sbjct: 3 KLKTRKAAAKRFRVTGSGKKIFRRKAFKNHLLQHKSSERKFR 44
>sp|B1W353|RL35_STRGG 50S ribosomal protein L35 OS=Streptomyces griseus subsp. griseus
(strain JCM 4626 / NBRC 13350) GN=rpmI PE=3 SV=1
Length = 64
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMV 127
K KTH ++KRF++TG GK+LR RAGK+HLL K++K+ L+ V
Sbjct: 3 KNKTHSGASKRFKITGSGKVLRERAGKRHLLEHKSSKKTRSLTGTV 48
>sp|Q47N71|RL35_THEFY 50S ribosomal protein L35 OS=Thermobifida fusca (strain YX) GN=rpmI
PE=3 SV=1
Length = 63
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLS 124
K K+H +++RFRVTG GKI+RRR K HLL K +KR RLS
Sbjct: 3 KNKSHSGASRRFRVTGTGKIMRRRTNKNHLLEHKPSKRTRRLS 45
>sp|B0K8B4|RL35_THEP3 50S ribosomal protein L35 OS=Thermoanaerobacter pseudethanolicus
(strain ATCC 33223 / 39E) GN=rpmI PE=3 SV=1
Length = 65
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 31/44 (70%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSK 125
KMKTH+ +AKRF+V GK+ R RA K HLL KN KRK RL K
Sbjct: 3 KMKTHRGAAKRFKVLKSGKVKRSRAYKSHLLTHKNAKRKRRLRK 46
>sp|A4XKC0|RL35_CALS8 50S ribosomal protein L35 OS=Caldicellulosiruptor saccharolyticus
(strain ATCC 43494 / DSM 8903) GN=rpmI PE=3 SV=1
Length = 65
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 34/46 (73%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMV 127
K+KTH+ AKR +++G GK LR++AGK HLL+ K+ KRK L K V
Sbjct: 3 KLKTHRGLAKRIKISGSGKYLRKKAGKSHLLSGKSRKRKRNLKKTV 48
>sp|B9MRK1|RL35_CALBD 50S ribosomal protein L35 OS=Caldicellulosiruptor bescii (strain
ATCC BAA-1888 / DSM 6725 / Z-1320) GN=rpmI PE=3 SV=1
Length = 65
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 34/46 (73%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMV 127
K+KTH+ AKR +++G GK LR++AGK HLL+ K+ KRK L K V
Sbjct: 3 KLKTHRGLAKRIKISGSGKYLRKKAGKSHLLSGKSRKRKRNLKKTV 48
>sp|A0LFC4|RL35_SYNFM 50S ribosomal protein L35 OS=Syntrophobacter fumaroxidans (strain
DSM 10017 / MPOB) GN=rpmI PE=3 SV=1
Length = 65
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 33/42 (78%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRL 123
KMKT++A+AKRF+ TG GK +R RA K H+L KK+ +RK RL
Sbjct: 3 KMKTNRAAAKRFKRTGTGKFMRARANKSHILTKKSPQRKRRL 44
>sp|A6WCU3|RL35_KINRD 50S ribosomal protein L35 OS=Kineococcus radiotolerans (strain ATCC
BAA-149 / DSM 14245 / SRS30216) GN=rpmI PE=3 SV=1
Length = 64
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLS 124
K KTH + KRFR+TG GK++R +A K+HLL K++KR RLS
Sbjct: 3 KNKTHSGAKKRFRITGSGKVMREQANKRHLLEVKSSKRTRRLS 45
>sp|A0L4J8|RL35_MAGSM 50S ribosomal protein L35 OS=Magnetococcus sp. (strain MC-1)
GN=rpmI PE=3 SV=1
Length = 65
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 31/39 (79%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRK 120
K+KTH+ +AKRF+VTG GKI R +A K H+L KK+ KRK
Sbjct: 3 KLKTHRGAAKRFKVTGSGKIRRNKAFKSHILTKKSAKRK 41
>sp|A1SJH9|RL35_NOCSJ 50S ribosomal protein L35 OS=Nocardioides sp. (strain BAA-499 /
JS614) GN=rpmI PE=3 SV=1
Length = 64
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 29/37 (78%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTK 118
K KTH ++KRFRVTG GKILR +AGK+H L KK +K
Sbjct: 3 KNKTHSGASKRFRVTGSGKILREKAGKRHNLEKKASK 39
>sp|Q7V9L2|RL35_PROMA 50S ribosomal protein L35 OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=rpmI PE=3 SV=1
Length = 65
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLS 124
K+KT KA+AKRF+VTG GK +RRRA + HLL K++K K L
Sbjct: 3 KLKTRKAAAKRFKVTGTGKFMRRRAFRNHLLDHKSSKLKRHLG 45
>sp|Q2RHN1|RL35_MOOTA 50S ribosomal protein L35 OS=Moorella thermoacetica (strain ATCC
39073) GN=rpmI PE=3 SV=1
Length = 66
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 30/42 (71%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRL 123
KMKTH+ +AKR RVT GK+ R RA K HLLA K K+K RL
Sbjct: 3 KMKTHRGAAKRLRVTASGKVKRFRAYKSHLLASKTPKQKRRL 44
>sp|P51270|RK35_PORPU 50S ribosomal protein L35, chloroplastic OS=Porphyra purpurea
GN=rpl35 PE=3 SV=1
Length = 65
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 32/43 (74%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLS 124
K+KT KA AKRF+V+ GKILR +A K HLL KK++K + LS
Sbjct: 3 KLKTSKAIAKRFKVSSSGKILRHKASKSHLLQKKSSKHRRHLS 45
>sp|B0K3V4|RL35_THEPX 50S ribosomal protein L35 OS=Thermoanaerobacter sp. (strain X514)
GN=rpmI PE=3 SV=1
Length = 65
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 31/44 (70%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSK 125
KMKTH+ +AKRF+V GK+ R +A K HLL KN KRK RL K
Sbjct: 3 KMKTHRGAAKRFKVLKSGKVKRSKAYKSHLLTHKNAKRKRRLRK 46
>sp|B8DPN0|RL35_DESVM 50S ribosomal protein L35 OS=Desulfovibrio vulgaris (strain
Miyazaki F / DSM 19637) GN=rpmI PE=3 SV=1
Length = 65
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 33/44 (75%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSK 125
K+KT +++AKRF VTG GK RR+ +H+L KKN KR++RL +
Sbjct: 3 KIKTRRSAAKRFSVTGSGKFKRRKQNLRHILTKKNAKRRMRLGQ 46
>sp|A0PZN3|RL35_CLONN 50S ribosomal protein L35 OS=Clostridium novyi (strain NT) GN=rpmI
PE=3 SV=1
Length = 65
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 36/49 (73%), Gaps = 2/49 (4%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKN--TKRKLRLSKMVS 128
KMKTH+ +AKRF+ TG GK+ R +A K H+L KK+ TKR LR S +VS
Sbjct: 3 KMKTHRGAAKRFKKTGSGKLKRAKAFKSHILTKKSSKTKRNLRKSGLVS 51
>sp|A0QYU7|RL35_MYCS2 50S ribosomal protein L35 OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=rpmI PE=3 SV=1
Length = 64
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 31/43 (72%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLS 124
K KTH ++KRFR TG GKI+R++A ++HLL K TKR RL
Sbjct: 3 KAKTHSGASKRFRRTGTGKIVRQKANRRHLLEHKPTKRTRRLD 45
>sp|Q114D7|RL35_TRIEI 50S ribosomal protein L35 OS=Trichodesmium erythraeum (strain
IMS101) GN=rpmI PE=3 SV=1
Length = 65
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 33/44 (75%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSK 125
K+KT KA+A+RF+ TG GKI RR+A K HLL K++ RK LSK
Sbjct: 3 KLKTRKAAARRFKATGSGKIKRRKAFKSHLLEHKSSTRKNNLSK 46
>sp|A1TAC4|RL35_MYCVP 50S ribosomal protein L35 OS=Mycobacterium vanbaalenii (strain DSM
7251 / PYR-1) GN=rpmI PE=3 SV=1
Length = 64
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 31/43 (72%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLS 124
K KTH ++KRFR TG GK++R++A ++HLL K TKR RL
Sbjct: 3 KAKTHSGASKRFRTTGSGKVVRQKANRRHLLEHKPTKRTRRLD 45
>sp|A4T9V0|RL35_MYCGI 50S ribosomal protein L35 OS=Mycobacterium gilvum (strain PYR-GCK)
GN=rpmI PE=3 SV=1
Length = 64
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 31/43 (72%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLS 124
K KTH ++KRFR TG GKI+R++A ++HLL K TKR RL
Sbjct: 3 KAKTHSGASKRFRKTGTGKIVRQKANRRHLLEHKATKRTRRLD 45
>sp|Q828D1|RL35_STRAW 50S ribosomal protein L35 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=rpmI PE=3 SV=1
Length = 64
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLS 124
K K+H ++KRF+VTG GK+LR RAGK+HLL K+++ RL+
Sbjct: 3 KNKSHSGASKRFKVTGSGKVLRERAGKRHLLEHKSSRLTRRLT 45
>sp|A8FG26|RL35_BACP2 50S ribosomal protein L35 OS=Bacillus pumilus (strain SAFR-032)
GN=rpmI PE=3 SV=1
Length = 66
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNT--KRKLRLSKMVS 128
KMKTH+ SAKRF+ TG GK+ R A HL A K+T KRKLR S +VS
Sbjct: 3 KMKTHRGSAKRFKKTGSGKLKRSHAYTSHLFANKSTKQKRKLRKSAIVS 51
>sp|O88059|RL35_STRCO 50S ribosomal protein L35 OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=rpmI PE=3 SV=1
Length = 64
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLS 124
K K+H ++KRF++TG GK+LR RAGK+HLL K+++ RL+
Sbjct: 3 KNKSHSGASKRFKITGSGKVLRERAGKRHLLEHKSSRVTRRLT 45
>sp|C5CAP9|RL35_MICLC 50S ribosomal protein L35 OS=Micrococcus luteus (strain ATCC 4698 /
DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB 9278 / NCTC
2665 / VKM Ac-2230) GN=rpmI PE=3 SV=1
Length = 64
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 37/49 (75%), Gaps = 2/49 (4%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTK--RKLRLSKMVS 128
KMKTH + KRFRVTG GKI+R++A ++H L K+++ R+L+ ++VS
Sbjct: 3 KMKTHSGAKKRFRVTGSGKIMRQQANRRHYLEHKSSRLTRRLKGDQLVS 51
>sp|Q3ANJ5|RL35_SYNSC 50S ribosomal protein L35 OS=Synechococcus sp. (strain CC9605)
GN=rpmI PE=3 SV=1
Length = 65
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLS 124
K+KT KA+AKRF+ TG GK LRRRA + HLL K K+K L+
Sbjct: 3 KLKTRKAAAKRFKATGTGKFLRRRAFRNHLLDHKTPKQKRHLA 45
>sp|Q5YYI0|RL35_NOCFA 50S ribosomal protein L35 OS=Nocardia farcinica (strain IFM 10152)
GN=rpmI PE=3 SV=1
Length = 64
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 34/43 (79%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLS 124
KMK+H ++KRF+V+GKGK+LR++A ++HLL K ++R RL
Sbjct: 3 KMKSHSGASKRFKVSGKGKLLRQQANRRHLLEHKPSRRTRRLD 45
>sp|A4X645|RL35_SALTO 50S ribosomal protein L35 OS=Salinispora tropica (strain ATCC
BAA-916 / DSM 44818 / CNB-440) GN=rpmI PE=3 SV=1
Length = 64
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 82 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMVSF 129
KMK+H KR RVTGKGKI++++AG +H L KK++ R RL+ +V
Sbjct: 3 KMKSHTGMGKRVRVTGKGKIVKQQAGLRHNLEKKSSTRTRRLTGLVEV 50
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.127 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,811,334
Number of Sequences: 539616
Number of extensions: 1259194
Number of successful extensions: 4885
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 4115
Number of HSP's gapped (non-prelim): 793
length of query: 130
length of database: 191,569,459
effective HSP length: 96
effective length of query: 34
effective length of database: 139,766,323
effective search space: 4752054982
effective search space used: 4752054982
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)