Query 032933
Match_columns 130
No_of_seqs 136 out of 721
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 07:45:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032933.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032933hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00103 rpl35 ribosomal prote 99.8 4E-21 8.6E-26 130.9 3.8 50 80-129 1-50 (65)
2 PRK00172 rpmI 50S ribosomal pr 99.8 6.4E-21 1.4E-25 129.2 3.8 51 80-130 1-51 (65)
3 COG0291 RpmI Ribosomal protein 99.8 1.2E-20 2.6E-25 129.5 3.3 51 80-130 1-51 (65)
4 TIGR00001 rpmI_bact ribosomal 99.8 1.9E-20 4.1E-25 126.4 3.7 49 81-129 1-49 (63)
5 PF01632 Ribosomal_L35p: Ribos 99.8 5.7E-20 1.2E-24 122.6 2.0 50 81-130 1-50 (61)
6 KOG4316 Uncharacterized conser 89.9 0.059 1.3E-06 43.3 -1.1 55 72-126 69-123 (172)
7 PF10571 UPF0547: Uncharacteri 48.1 8.9 0.00019 21.9 0.7 17 3-19 8-24 (26)
8 PF04423 Rad50_zn_hook: Rad50 31.4 16 0.00034 23.1 -0.0 10 11-20 22-31 (54)
9 PF14803 Nudix_N_2: Nudix N-te 31.2 20 0.00042 21.7 0.4 17 10-26 1-17 (34)
10 PF08772 NOB1_Zn_bind: Nin one 30.5 20 0.00043 25.1 0.4 20 7-26 22-41 (73)
11 PRK00432 30S ribosomal protein 30.3 27 0.00059 22.5 1.0 12 6-17 17-28 (50)
12 PF03811 Zn_Tnp_IS1: InsA N-te 24.8 50 0.0011 20.1 1.4 15 4-19 1-15 (36)
13 PF14354 Lar_restr_allev: Rest 24.0 37 0.00079 21.4 0.7 10 9-18 3-12 (61)
14 PF02150 RNA_POL_M_15KD: RNA p 23.6 34 0.00075 20.4 0.5 9 9-17 1-9 (35)
15 PF14169 YdjO: Cold-inducible 22.3 38 0.00083 23.1 0.6 9 10-18 40-48 (59)
16 PF06463 Mob_synth_C: Molybden 22.0 55 0.0012 24.1 1.4 15 88-102 73-87 (128)
No 1
>CHL00103 rpl35 ribosomal protein L35
Probab=99.83 E-value=4e-21 Score=130.91 Aligned_cols=50 Identities=54% Similarity=0.719 Sum_probs=48.6
Q ss_pred ccccccCcccccceEEccCcceEeeccCcccccCCCChHHHhhcCCCccC
Q 032933 80 GYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMVSF 129 (130)
Q Consensus 80 ~~KmKThkgAaKRFKvTgsGK~kR~kAgkrHll~kKS~krKRrLrk~~~V 129 (130)
|+|||||+||+|||++||+|||+|+++|++|++++|+.+|+|+|+++.+|
T Consensus 1 MpKmKT~k~a~KRFKvT~sGKvkr~~a~k~H~l~kKs~krkR~L~~~~~v 50 (65)
T CHL00103 1 MPKLKTRKAAAKRYKKTGNGKFLRRKAFKSHLLQKKSSKQKRKLSQTVCV 50 (65)
T ss_pred CCccccchhhhheeEecCCCCEEeccCCccccccCCCHHHHHhcCCCeeE
Confidence 58999999999999999999999999999999999999999999999876
No 2
>PRK00172 rpmI 50S ribosomal protein L35; Reviewed
Probab=99.82 E-value=6.4e-21 Score=129.18 Aligned_cols=51 Identities=51% Similarity=0.714 Sum_probs=49.1
Q ss_pred ccccccCcccccceEEccCcceEeeccCcccccCCCChHHHhhcCCCccCC
Q 032933 80 GYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMVSFP 130 (130)
Q Consensus 80 ~~KmKThkgAaKRFKvTgsGK~kR~kAgkrHll~kKS~krKRrLrk~~~V~ 130 (130)
|+|||||+||+|||++||+|+|+|+++|++|++++|+.+++|+|+++.+|.
T Consensus 1 MpKmKT~k~akKRFk~T~~GKi~r~~a~k~H~~~~Ks~k~kR~lr~~~~v~ 51 (65)
T PRK00172 1 MPKMKTKSGAAKRFKVTGSGKVKRKHAGKRHILTKKSTKRKRQLRGTTVVS 51 (65)
T ss_pred CCCcccchhhhheeEEcCCCCEEeccCCCccccccCCHHHHHhcCCCeeEC
Confidence 589999999999999999999999999999999999999999999998874
No 3
>COG0291 RpmI Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.2e-20 Score=129.53 Aligned_cols=51 Identities=55% Similarity=0.761 Sum_probs=49.2
Q ss_pred ccccccCcccccceEEccCcceEeeccCcccccCCCChHHHhhcCCCccCC
Q 032933 80 GYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMVSFP 130 (130)
Q Consensus 80 ~~KmKThkgAaKRFKvTgsGK~kR~kAgkrHll~kKS~krKRrLrk~~~V~ 130 (130)
|+|||||+||+|||++||+|+|+|++||++|++++|+.+++|+|++..+|.
T Consensus 1 MPKmKT~k~aaKRFK~T~~Gkikr~~A~k~H~l~kKs~k~kR~Lr~~~~v~ 51 (65)
T COG0291 1 MPKMKTKKGAAKRFKITGTGKIKRKHAGKRHILTKKSTKRKRHLRKTAVVS 51 (65)
T ss_pred CCccchhhhhHhheeecCCCcEEecccccccccccCCHHHHHhccCCceeC
Confidence 689999999999999999999999999999999999999999999998874
No 4
>TIGR00001 rpmI_bact ribosomal protein L35. This ribosomal protein is found in bacteria and organelles only. It is not closely related to any eukaryotic or archaeal ribosomal protein.
Probab=99.80 E-value=1.9e-20 Score=126.40 Aligned_cols=49 Identities=61% Similarity=0.865 Sum_probs=47.8
Q ss_pred cccccCcccccceEEccCcceEeeccCcccccCCCChHHHhhcCCCccC
Q 032933 81 YKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMVSF 129 (130)
Q Consensus 81 ~KmKThkgAaKRFKvTgsGK~kR~kAgkrHll~kKS~krKRrLrk~~~V 129 (130)
+|||||+||+|||++||+|||+|++||++|++++|+.+++|+|+++.+|
T Consensus 1 pKmKT~~~akKRFK~T~tGKvkr~~a~k~H~l~~Ks~k~kR~L~~~~~v 49 (63)
T TIGR00001 1 PKMKTHKAAAKRFKITGSGKIKRKKAGKRHLLTKKSSKRKRNLRKKAIV 49 (63)
T ss_pred CCcccchhhhhheEEcCCCCEEecccCcccccccCCHHHHHhcCCCeeE
Confidence 6999999999999999999999999999999999999999999999886
No 5
>PF01632 Ribosomal_L35p: Ribosomal protein L35; InterPro: IPR021137 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L35 is a basic protein of 60 to 70 amino-acid residues from the large subunit []. Like many basic polypeptides, L35 completely inhibits ornithine decarboxylase when present unbound in the cell, but the inhibitory function is abolished upon its incorporation into ribosomes []. It belongs to a family of ribosomal proteins, including L35 from bacteria, plant chloroplast, red algae chloroplasts and cyanelles. In plants it is a nuclear encoded gene product, which suggests a chloroplast-to-nucleus relocation during the evolution of higher plants [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QBE_3 2QBG_3 3SGF_7 2QOV_3 3J0Y_6 3I22_3 3E1D_W 1VS6_3 2VHN_3 1VS8_3 ....
Probab=99.78 E-value=5.7e-20 Score=122.60 Aligned_cols=50 Identities=64% Similarity=0.879 Sum_probs=43.8
Q ss_pred cccccCcccccceEEccCcceEeeccCcccccCCCChHHHhhcCCCccCC
Q 032933 81 YKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMVSFP 130 (130)
Q Consensus 81 ~KmKThkgAaKRFKvTgsGK~kR~kAgkrHll~kKS~krKRrLrk~~~V~ 130 (130)
+|||||++++|||++||+|+|+|+++|++|++++|+.+++|+|+++.+|.
T Consensus 1 pKmKT~k~a~KRFk~t~sGkikr~~agk~H~~~~Ks~krkr~Lr~~~~v~ 50 (61)
T PF01632_consen 1 PKMKTHKSAAKRFKVTGSGKIKRKRAGKRHLLTKKSSKRKRRLRKTTLVH 50 (61)
T ss_dssp ---S-HHHHHTTEEEESSSEEEEE-SSSSSSSSSSSCHCTTTTSCEEESS
T ss_pred CCccchhhhHhheeEcCCCeEEeccCCcccccccCCHHHHHHcCCCEEEC
Confidence 69999999999999999999999999999999999999999999998874
No 6
>KOG4316 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.94 E-value=0.059 Score=43.27 Aligned_cols=55 Identities=33% Similarity=0.367 Sum_probs=50.4
Q ss_pred eeeeeeecccccccCcccccceEEccCcceEeeccCcccccCCCChHHHhhcCCC
Q 032933 72 TVTVFAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKM 126 (130)
Q Consensus 72 s~~~~~~k~~KmKThkgAaKRFKvTgsGK~kR~kAgkrHll~kKS~krKRrLrk~ 126 (130)
+++-+.+++.|-||-++.-+||+-...|-..|.++|+.-.+-+|+.-.+++|...
T Consensus 69 ~~t~Fs~~kGkrktvkaVldRFkRL~~G~WIr~h~Gr~Kkl~kK~~a~~krl~~~ 123 (172)
T KOG4316|consen 69 SLTYFSARKGKRKTVKAVLDRFKRLHCGLWIRAHPGRHKKLYKKDEAWQKRLLYY 123 (172)
T ss_pred hhhhhhhhhcccccHHHHHHHHHhcccCeeeeecCchhhhhhhcCHHHHHHHHHh
Confidence 6777888999999999999999999999999999999999999999888887643
No 7
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=48.06 E-value=8.9 Score=21.94 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=12.9
Q ss_pred cceeeeeeeccCCCCCC
Q 032933 3 SMISFNLKFCPLCPSSS 19 (130)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (130)
..++.+.++||+|+...
T Consensus 8 ~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 8 AEVPESAKFCPHCGYDF 24 (26)
T ss_pred CCchhhcCcCCCCCCCC
Confidence 35677788899998764
No 8
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=31.40 E-value=16 Score=23.09 Aligned_cols=10 Identities=40% Similarity=1.026 Sum_probs=4.8
Q ss_pred eccCCCCCCc
Q 032933 11 FCPLCPSSSS 20 (130)
Q Consensus 11 ~~~~~~~~~~ 20 (130)
.||+|.++..
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 7999987654
No 9
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=31.22 E-value=20 Score=21.71 Aligned_cols=17 Identities=41% Similarity=0.898 Sum_probs=7.6
Q ss_pred eeccCCCCCCccccccc
Q 032933 10 KFCPLCPSSSSVRASRG 26 (130)
Q Consensus 10 ~~~~~~~~~~~~~~~~~ 26 (130)
+|||-|+.+-..+++.|
T Consensus 1 kfC~~CG~~l~~~ip~g 17 (34)
T PF14803_consen 1 KFCPQCGGPLERRIPEG 17 (34)
T ss_dssp -B-TTT--B-EEE--TT
T ss_pred CccccccChhhhhcCCC
Confidence 58999998877676654
No 10
>PF08772 NOB1_Zn_bind: Nin one binding (NOB1) Zn-ribbon like; InterPro: IPR014881 This entry corresponds to a zinc ribbon and is found on the RNA binding protein NOB1. ; PDB: 2CON_A.
Probab=30.55 E-value=20 Score=25.08 Aligned_cols=20 Identities=30% Similarity=0.675 Sum_probs=9.8
Q ss_pred eeeeeccCCCCCCccccccc
Q 032933 7 FNLKFCPLCPSSSSVRASRG 26 (130)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~ 26 (130)
.+..|||-|+..+-.||+..
T Consensus 22 ~~k~FCp~CGn~TL~rvsvs 41 (73)
T PF08772_consen 22 MTKQFCPKCGNATLKRVSVS 41 (73)
T ss_dssp SS--S-SSS--S--EEEE-B
T ss_pred CCceeCcccCCCcceEEEEE
Confidence 35679999999999999875
No 11
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=30.30 E-value=27 Score=22.48 Aligned_cols=12 Identities=50% Similarity=0.941 Sum_probs=9.2
Q ss_pred eeeeeeccCCCC
Q 032933 6 SFNLKFCPLCPS 17 (130)
Q Consensus 6 ~~~~~~~~~~~~ 17 (130)
..+..+||.|++
T Consensus 17 ~~~~~fCP~Cg~ 28 (50)
T PRK00432 17 KRKNKFCPRCGS 28 (50)
T ss_pred EEccCcCcCCCc
Confidence 346779999986
No 12
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=24.75 E-value=50 Score=20.11 Aligned_cols=15 Identities=33% Similarity=0.902 Sum_probs=10.3
Q ss_pred ceeeeeeeccCCCCCC
Q 032933 4 MISFNLKFCPLCPSSS 19 (130)
Q Consensus 4 ~~~~~~~~~~~~~~~~ 19 (130)
|+.+++ .||.|.+..
T Consensus 1 Ma~i~v-~CP~C~s~~ 15 (36)
T PF03811_consen 1 MAKIDV-HCPRCQSTE 15 (36)
T ss_pred CCcEee-eCCCCCCCC
Confidence 555555 499998766
No 13
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=24.04 E-value=37 Score=21.36 Aligned_cols=10 Identities=60% Similarity=1.255 Sum_probs=7.6
Q ss_pred eeeccCCCCC
Q 032933 9 LKFCPLCPSS 18 (130)
Q Consensus 9 ~~~~~~~~~~ 18 (130)
|+-||.|+..
T Consensus 3 LkPCPFCG~~ 12 (61)
T PF14354_consen 3 LKPCPFCGSA 12 (61)
T ss_pred CcCCCCCCCc
Confidence 6789999543
No 14
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=23.64 E-value=34 Score=20.43 Aligned_cols=9 Identities=44% Similarity=1.464 Sum_probs=5.3
Q ss_pred eeeccCCCC
Q 032933 9 LKFCPLCPS 17 (130)
Q Consensus 9 ~~~~~~~~~ 17 (130)
+.|||.|+.
T Consensus 1 m~FCp~C~n 9 (35)
T PF02150_consen 1 MRFCPECGN 9 (35)
T ss_dssp --BETTTTS
T ss_pred CeeCCCCCc
Confidence 468888864
No 15
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=22.35 E-value=38 Score=23.05 Aligned_cols=9 Identities=56% Similarity=1.335 Sum_probs=6.7
Q ss_pred eeccCCCCC
Q 032933 10 KFCPLCPSS 18 (130)
Q Consensus 10 ~~~~~~~~~ 18 (130)
..||||.++
T Consensus 40 p~CPlC~s~ 48 (59)
T PF14169_consen 40 PVCPLCKSP 48 (59)
T ss_pred ccCCCcCCc
Confidence 349999765
No 16
>PF06463 Mob_synth_C: Molybdenum Cofactor Synthesis C; InterPro: IPR010505 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This entry represents MoaA, which belongs to a family of enzymes involved in the synthesis of metallo-cofactors (IPR000385 from INTERPRO). Each subunit of the MoaA dimer is comprised of an N-terminal SAM domain (IPR007197 from INTERPRO) that contains the [4Fe-4S] cluster typical for this family of enzymes, as well as an additional [4Fe-4S] cluster in the C-terminal domain that is unique to MoaA proteins []. The unique Fe site of the C-terminal [4Fe-4S] cluster is thought to be involved in the binding and activation of 5'-GTP. Mutations in the human MoCF biosynthesis proteins MOCS1, MOCS2 or GEPH cause MoCF Deficiency type A (MOCOD), causing the loss of activity of MoCF-containing enzymes, resulting in neurological abnormalities and death [].; GO: 0051539 4 iron, 4 sulfur cluster binding, 0006777 Mo-molybdopterin cofactor biosynthetic process, 0019008 molybdopterin synthase complex; PDB: 2FB2_A 2FB3_A 1TV8_B 1TV7_A.
Probab=21.97 E-value=55 Score=24.09 Aligned_cols=15 Identities=40% Similarity=0.683 Sum_probs=9.9
Q ss_pred ccccceEEccCcceE
Q 032933 88 ASAKRFRVTGKGKIL 102 (130)
Q Consensus 88 gAaKRFKvTgsGK~k 102 (130)
+.--|.++|++|+++
T Consensus 73 ~~CNRiRlTsdG~l~ 87 (128)
T PF06463_consen 73 SSCNRIRLTSDGKLK 87 (128)
T ss_dssp GG--EEEE-TTSEEE
T ss_pred CcCCEEEEccCccEE
Confidence 345799999999987
Done!