BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032935
(130 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49595|HMGB1_ARATH High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1
PE=1 SV=1
Length = 178
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/126 (65%), Positives = 98/126 (77%), Gaps = 3/126 (2%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKSAKKDPNKPKRPP 60
MK +GK VK K E +KPV+DR GKRKA A + + + T+ K AKKDPNKPKR P
Sbjct: 1 MKTAKGKDKVKTTK-EALKPVDDRKVGKRKAP--AEKPTKRETRKEKKAKKDPNKPKRAP 57
Query: 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKL 120
SAFFVFLE+FR +K+E+PNVKAVSAVGKAGG+KWKS++ AEKAP+E KAAKRK +YEK
Sbjct: 58 SAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQ 117
Query: 121 MTAYNK 126
M AYNK
Sbjct: 118 MDAYNK 123
>sp|P40619|HMGL_IPONI HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1
Length = 144
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/86 (72%), Positives = 72/86 (83%)
Query: 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAE 102
TK K A KDPNKPKRPPSAFFVF+E+FRK YK++HPN K+V+ VGKAGG+KWK LT AE
Sbjct: 23 TKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAE 82
Query: 103 KAPFEAKAAKRKLDYEKLMTAYNKKQ 128
KAPF +KA KRK +YEK + AYNKKQ
Sbjct: 83 KAPFISKAEKRKQEYEKNLQAYNKKQ 108
>sp|P26585|HMGL_SOYBN HMG1/2-like protein OS=Glycine max PE=2 SV=1
Length = 152
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 71/82 (86%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEA 108
A KDPNKPKRPPSAFFVF+EEFRKV+ +EHP KAVSAVGKA G KWK+++DAEKAP+ A
Sbjct: 37 AAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVA 96
Query: 109 KAAKRKLDYEKLMTAYNKKQVD 130
K+ KRK++YEK M AYNKKQ +
Sbjct: 97 KSEKRKVEYEKNMRAYNKKQAE 118
>sp|P93047|HMGB3_ARATH High mobility group B protein 3 OS=Arabidopsis thaliana GN=HMGB3
PE=1 SV=1
Length = 141
Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 72/87 (82%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K K K A KDPNKPKRP SAFFVF+E+FR YK+EHP K+V+AVGKAGGEKWKSL+D
Sbjct: 20 KPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSD 79
Query: 101 AEKAPFEAKAAKRKLDYEKLMTAYNKK 127
+EKAP+ AKA KRK++YEK M AYNKK
Sbjct: 80 SEKAPYVAKADKRKVEYEKNMKAYNKK 106
>sp|O49596|HMGB2_ARATH High mobility group B protein 2 OS=Arabidopsis thaliana GN=HMGB2
PE=1 SV=1
Length = 144
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 70/81 (86%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPF 106
K+A KDPNKPKRP SAFFVF+E+FR+ +K+E+P K+V+ VGKA G+KWKSL+D+EKAP+
Sbjct: 29 KAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPY 88
Query: 107 EAKAAKRKLDYEKLMTAYNKK 127
AKA KRK++YEK + AYNKK
Sbjct: 89 VAKAEKRKVEYEKNIKAYNKK 109
>sp|P40620|HMGL_VICFA HMG1/2-like protein OS=Vicia faba PE=2 SV=1
Length = 149
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 65/77 (84%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKA 110
KDPNKPKRPPSAFFVF+ +FR+ YK++HPN K+V+AVGKA GE+WKSL++ EKAP+ +A
Sbjct: 40 KDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRA 99
Query: 111 AKRKLDYEKLMTAYNKK 127
K+K +YE + AYNKK
Sbjct: 100 LKKKEEYEITLQAYNKK 116
>sp|P27347|MNB1B_MAIZE DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1
Length = 157
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 83/129 (64%), Gaps = 17/129 (13%)
Query: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRTKNVKS-AKKDPNKPKRP 59
MK + KGA K D VK S+ + K K K A KDPNKPKR
Sbjct: 1 MKGAKSKGAAKADAKLAVK----------------SKGAEKPAKGRKGKAGKDPNKPKRA 44
Query: 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEK 119
PSAFFVF+EEFRK +K+++P K+V+AVGKA G++WKSL++++KAP+ AKA K KL+Y K
Sbjct: 45 PSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNK 104
Query: 120 LMTAYNKKQ 128
+ AYNK +
Sbjct: 105 AIAAYNKGE 113
>sp|Q42344|HMGB4_ARATH High mobility group B protein 4 OS=Arabidopsis thaliana GN=HMGB4
PE=1 SV=1
Length = 138
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 61/81 (75%)
Query: 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPF 106
K KKDPN+PKRPPSAFFVFLE+FRK + +PN K+V+ VGKA G +WK++TD +KAP+
Sbjct: 26 KKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPY 85
Query: 107 EAKAAKRKLDYEKLMTAYNKK 127
AKA RK +Y K + YN K
Sbjct: 86 VAKAESRKTEYIKNVQQYNLK 106
>sp|P40621|HMGL_WHEAT HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1
Length = 161
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 63/77 (81%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAA 111
DPNKPKR PSAFFVF+ EFR+ +KQ++P K+V+AVGKA GE+WKSL+++EKAP+ AKA
Sbjct: 38 DPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKAN 97
Query: 112 KRKLDYEKLMTAYNKKQ 128
K K +Y K + AYNK +
Sbjct: 98 KLKGEYNKAIAAYNKGE 114
>sp|O49597|HMGB5_ARATH High mobility group B protein 5 OS=Arabidopsis thaliana GN=HMGB5
PE=2 SV=1
Length = 125
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 64/94 (68%), Gaps = 4/94 (4%)
Query: 36 SRSSNKRTK----NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAG 91
SRS++ R K V KDPN+PK+PPS FFVFL++FRK + +P+ K+V VG+A
Sbjct: 10 SRSTDDRLKVRGNKVGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAA 69
Query: 92 GEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125
G+KWK++T+ E+APF AK+ +K +Y M YN
Sbjct: 70 GKKWKTMTEEERAPFVAKSQSKKTEYAVTMQQYN 103
>sp|O64702|HMG14_ARATH High mobility group B protein 14 OS=Arabidopsis thaliana GN=HMGB14
PE=2 SV=2
Length = 151
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 52/72 (72%)
Query: 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKL 115
PK+P +AFF FL++FRK Y++E+P+VK++ +GK GEKWK++T EK + A +++
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKRE 122
Query: 116 DYEKLMTAYNKK 127
++ + MT Y K+
Sbjct: 123 EFHRAMTEYTKR 134
>sp|P07746|HMGT_ONCMY High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2
Length = 204
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKA 110
KDPN PKRP SAFF+F +FR K E P + ++ V K GEKW +LT +K P+E KA
Sbjct: 89 KDPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLTAEDKVPYEKKA 147
Query: 111 AKRKLDYEKLMTAYNKK 127
++ K YEK +TAY K
Sbjct: 148 SRLKEKYEKDITAYRNK 164
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFEAK 109
KDP KP+ S++ F++ R+ +K++HP S K E+WK+++ EK FE
Sbjct: 3 KDPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62
Query: 110 AAKRKLDYEKLMTAY 124
A K+ YE+ M +Y
Sbjct: 63 AKLDKVRYEREMRSY 77
>sp|Q8LDF9|HMGB7_ARATH High mobility group B protein 7 OS=Arabidopsis thaliana GN=HMGB7
PE=1 SV=1
Length = 241
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 41 KRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
K+T + K + NKPKRP +AFF+F+ +FRK +K EH A A K GGEKWKSLT+
Sbjct: 100 KKTNDEKKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDA-AKIGGEKWKSLTE 158
Query: 101 AEKAPFEAKAAKRKLDYEKLM 121
EK + KAA+ K +Y K +
Sbjct: 159 EEKKVYLDKAAELKAEYNKSL 179
>sp|P40618|HMGB3_CHICK High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2
Length = 202
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAA 111
DPN PKRPPSAFF+F EFR K +P + ++ V K GE W +L+D EK P+ KAA
Sbjct: 89 DPNAPKRPPSAFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDGEKQPYNNKAA 147
Query: 112 KRKLDYEKLMTAYNKK 127
K K YEK + Y K
Sbjct: 148 KLKEKYEKDVADYKSK 163
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 61 SAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEK 119
SA+ F++ R+ +K+++P V + K E+WK+++ EKA F+ A K+ Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 73
Query: 120 LMTAY 124
M Y
Sbjct: 74 EMKDY 78
>sp|Q4WY33|NHP6_ASPFU Non-histone chromosomal protein 6 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=nhp6
PE=3 SV=1
Length = 104
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 38 SSNKRTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKS 97
S+ +TK V+ KKDPN PKR SA+ F E R ++E+P + + VGK GE+WK+
Sbjct: 7 STRTKTKRVERKKKDPNAPKRGLSAYMFFANENRDKVREENPGI-SFGQVGKMLGERWKA 65
Query: 98 LTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQ 128
L+D+E+ P+E KAA K YE +YN Q
Sbjct: 66 LSDSERRPYEEKAAADKKRYEDEKASYNAAQ 96
>sp|P36194|HMGB1_CHICK High mobility group protein B1 OS=Gallus gallus GN=HMGB1 PE=2 SV=2
Length = 201
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAA 111
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D EK P+ KAA
Sbjct: 88 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDGEKQPYNNKAA 146
Query: 112 KRKLDYEKLMTAYNKK 127
K K YEK + Y K
Sbjct: 147 KLKEKYEKDVADYKSK 162
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 61 SAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEK 119
SA+ F++ R+ +K+ +P V + K E+WK+++ EKA F+ A K+ Y++
Sbjct: 14 SAYAFFVQTCREEHKK-NPEVPVNFAEFSKKCSERWKTMSSKEKAKFDEMAKADKVRYDR 72
Query: 120 LMTAY 124
M Y
Sbjct: 73 EMKDY 77
>sp|Q7S045|NHP6_NEUCR Non-histone chromosomal protein 6 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=nhp-6 PE=3 SV=1
Length = 103
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEA 108
AKKDPN PKR SA+ F E R+ ++E+P V + VGK GE+WK+L+D ++AP+EA
Sbjct: 19 AKKDPNAPKRGLSAYMFFANEQRENVREENPGV-SFGQVGKILGERWKALSDKQRAPYEA 77
Query: 109 KAAKRKLDYEKLMTAYN 125
KAA K YE AYN
Sbjct: 78 KAAADKKRYEDEKQAYN 94
>sp|O15347|HMGB3_HUMAN High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4
Length = 200
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAA 111
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L D+EK P+ KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 112 KRKLDYEKLMTAYNKK 127
K K YEK + Y K
Sbjct: 148 KLKEKYEKDVADYKSK 163
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 61 SAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEK 119
SA+ F++ R+ +K+++P V + K E+WK+++ EK+ F+ A K+ Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 120 LMTAY 124
M Y
Sbjct: 74 EMKDY 78
>sp|P0C6E5|HMG3M_HUMAN Putative high mobility group protein B3-like protein OS=Homo
sapiens PE=5 SV=1
Length = 187
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAK 109
KKDPN PKRPPS FF+F EF K +P + + V K GE WK+L D+EK P+ +
Sbjct: 86 KKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGI-PIGDVAKKLGEMWKNLNDSEKQPYITQ 144
Query: 110 AAKRKLDYEKLMTAYNKK 127
AAK K YEK + Y K
Sbjct: 145 AAKLKEKYEKDVAVYKSK 162
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 61 SAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEK 119
SA+ F++ R+ +K+++P V + K E+WK+++ EK+ F A K+ Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAKADKVHYDQ 73
Query: 120 LMTAY 124
+ Y
Sbjct: 74 EIKDY 78
>sp|Q32L31|HMGB3_BOVIN High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2
Length = 200
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAA 111
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D+EK P+ KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGI-SIGDVAKKLGEMWNNLSDSEKQPYINKAA 147
Query: 112 KRKLDYEKLMTAYNKK 127
K K YEK + Y K
Sbjct: 148 KLKEKYEKDVADYKSK 163
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 61 SAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEK 119
SA+ F++ R+ +K+++P V + K E+WK+++ EK+ F+ A K+ Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDR 73
Query: 120 LMTAY 124
M Y
Sbjct: 74 EMKDY 78
>sp|O54879|HMGB3_MOUSE High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3
Length = 200
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAA 111
DPN PKRPPS FF+F EFR K +P + ++ V K GE W +L+D EK P+ KAA
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGI-SIGDVAKKLGEMWNNLSDNEKQPYVTKAA 147
Query: 112 KRKLDYEKLMTAYNKK 127
K K YEK + Y K
Sbjct: 148 KLKEKYEKDVADYKSK 163
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 61 SAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEK 119
SA+ F++ R+ +K+++P V + K E+WK+++ EK+ F+ A K+ Y++
Sbjct: 14 SAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFDEMAKADKVRYDR 73
Query: 120 LMTAY 124
M Y
Sbjct: 74 EMKDY 78
>sp|Q4IQX3|NHP6_GIBZE Non-histone chromosomal protein 6 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=NHP6 PE=3
SV=1
Length = 101
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAP 105
K AKKDPN PKR SA+ F E R+ ++E+P + + VGK GE+WK+L + ++AP
Sbjct: 14 TKRAKKDPNAPKRGLSAYMFFANEQRENVREENPGI-SFGQVGKLLGERWKALNEKQRAP 72
Query: 106 FEAKAAKRKLDYEKLMTAYNKKQ 128
+EAKAA K YE AYN Q
Sbjct: 73 YEAKAAADKKRYEDEKQAYNADQ 95
>sp|P26584|HMGB2_CHICK High mobility group protein B2 OS=Gallus gallus GN=HMGB2 PE=2 SV=2
Length = 207
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAA 111
DPN PKRPPSAFF+F E R K +HP + ++ K GE W +K P+E KAA
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGL-SIGDTAKKLGEMWSEQLAKDKQPYEQKAA 149
Query: 112 KRKLDYEKLMTAYNKK 127
K K YEK + AY K
Sbjct: 150 KLKEKYEKDIAAYRAK 165
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 107
K DPNKP+ S++ F++ R+ +K++HP+ + + E+WK+++ EK FE
Sbjct: 2 GKGDPNKPRGKMSSYAYFVQTCREEHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFE 61
Query: 108 AKAAKRKLDYEKLMTAY 124
A K Y++ M Y
Sbjct: 62 EMAKGDKARYDREMKNY 78
>sp|Q6CC79|NHP6_YARLI Non-histone chromosomal protein 6 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=NHP6 PE=3 SV=1
Length = 103
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAA 111
DPN PKR SA+ F + R + ++P + A VGKA GEKWK+LTDAEK P+E KA
Sbjct: 21 DPNAPKRALSAYMFFANDNRDAIRADNPGI-AFGQVGKALGEKWKTLTDAEKVPYEEKAT 79
Query: 112 KRKLDYEKLMTAY 124
K YE AY
Sbjct: 80 ADKKRYEDEKAAY 92
>sp|P26583|HMGB2_HUMAN High mobility group protein B2 OS=Homo sapiens GN=HMGB2 PE=1 SV=2
Length = 209
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKR 113
N PKRPPSAFF+F E R K EHP + ++ K GE W + +K P+E KAAK
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 114 KLDYEKLMTAYNKK 127
K YEK + AY K
Sbjct: 152 KEKYEKDIAAYRAK 165
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 107
K DPNKP+ S++ F++ R+ +K++HP+ + K E+WK+++ EK+ FE
Sbjct: 2 GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFE 61
Query: 108 AKAAKRKLDYEKLMTAY 124
A K Y++ M Y
Sbjct: 62 DMAKSDKARYDREMKNY 78
>sp|P40673|HMGB2_BOVIN High mobility group protein B2 OS=Bos taurus GN=HMGB2 PE=1 SV=3
Length = 209
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKR 113
N PKRPPSAFF+F E R K EHP + ++ K GE W + +K P+E KAAK
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 114 KLDYEKLMTAYNKK 127
K YEK + AY K
Sbjct: 152 KEKYEKDIAAYRAK 165
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 107
K DPNKP+ S++ F++ R+ +K++HP+ + K E+WK+++ EK+ FE
Sbjct: 2 GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFE 61
Query: 108 AKAAKRKLDYEKLMTAY 124
A K Y++ M Y
Sbjct: 62 DMAKSDKARYDREMKNY 78
>sp|P52925|HMGB2_RAT High mobility group protein B2 OS=Rattus norvegicus GN=Hmgb2 PE=2
SV=2
Length = 210
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKR 113
N PKRPPSAFF+F E R K EHP + ++ K GE W + +K P+E KAAK
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 114 KLDYEKLMTAYNKK 127
K YEK + AY K
Sbjct: 152 KEKYEKDIAAYRAK 165
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 107
K DPNKP+ S++ F++ R+ +K++HP+ + K E+WK+++ EK+ FE
Sbjct: 2 GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFE 61
Query: 108 AKAAKRKLDYEKLMTAY 124
A K Y++ M Y
Sbjct: 62 DLAKSDKARYDREMKNY 78
>sp|P63159|HMGB1_RAT High mobility group protein B1 OS=Rattus norvegicus GN=Hmgb1 PE=1
SV=2
Length = 215
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKA 110
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W + +K P+E KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 111 AKRKLDYEKLMTAYNKK 127
AK K YEK + AY K
Sbjct: 149 AKLKEKYEKDIAAYRAK 165
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 107
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++ EK FE
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
Query: 108 AKAAKRKLDYEKLMTAY 124
A K YE+ M Y
Sbjct: 62 DMAKADKARYEREMKTY 78
>sp|A9RA84|HMGB1_PAPAN High mobility group protein B1 OS=Papio anubis GN=HMGB1 PE=3 SV=1
Length = 215
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKA 110
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W + +K P+E KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 111 AKRKLDYEKLMTAYNKK 127
AK K YEK + AY K
Sbjct: 149 AKLKEKYEKDIAAYRAK 165
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 107
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++ EK FE
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
Query: 108 AKAAKRKLDYEKLMTAY 124
A K YE+ M Y
Sbjct: 62 DMAKADKARYEREMKTY 78
>sp|P63158|HMGB1_MOUSE High mobility group protein B1 OS=Mus musculus GN=Hmgb1 PE=1 SV=2
Length = 215
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKA 110
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W + +K P+E KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 111 AKRKLDYEKLMTAYNKK 127
AK K YEK + AY K
Sbjct: 149 AKLKEKYEKDIAAYRAK 165
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 107
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++ EK FE
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
Query: 108 AKAAKRKLDYEKLMTAY 124
A K YE+ M Y
Sbjct: 62 DMAKADKARYEREMKTY 78
>sp|Q4R844|HMGB1_MACFA High mobility group protein B1 OS=Macaca fascicularis GN=HMGB1 PE=2
SV=3
Length = 215
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKA 110
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W + +K P+E KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 111 AKRKLDYEKLMTAYNKK 127
AK K YEK + AY K
Sbjct: 149 AKLKEKYEKDIAAYRAK 165
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 107
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++ EK FE
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
Query: 108 AKAAKRKLDYEKLMTAY 124
A K YE+ M Y
Sbjct: 62 DMAKADKARYEREMKTY 78
>sp|P09429|HMGB1_HUMAN High mobility group protein B1 OS=Homo sapiens GN=HMGB1 PE=1 SV=3
Length = 215
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKA 110
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W + +K P+E KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 111 AKRKLDYEKLMTAYNKK 127
AK K YEK + AY K
Sbjct: 149 AKLKEKYEKDIAAYRAK 165
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 107
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++ EK FE
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
Query: 108 AKAAKRKLDYEKLMTAY 124
A K YE+ M Y
Sbjct: 62 DMAKADKARYEREMKTY 78
>sp|Q08IE6|HMGB1_HORSE High mobility group protein B1 OS=Equus caballus GN=HMGB1 PE=2 SV=3
Length = 215
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKA 110
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W + +K P+E KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 111 AKRKLDYEKLMTAYNKK 127
AK K YEK + AY K
Sbjct: 149 AKLKEKYEKDIAAYRAK 165
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 107
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++ EK FE
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
Query: 108 AKAAKRKLDYEKLMTAY 124
A K YE+ M Y
Sbjct: 62 DMAKADKARYEREMKTY 78
>sp|Q6YKA4|HMGB1_CANFA High mobility group protein B1 OS=Canis familiaris GN=HMGB1 PE=2
SV=3
Length = 215
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKA 110
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W + +K P+E KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 111 AKRKLDYEKLMTAYNKK 127
AK K YEK + AY K
Sbjct: 149 AKLKEKYEKDIAAYRAK 165
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 107
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++ EK FE
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
Query: 108 AKAAKRKLDYEKLMTAY 124
A K YE+ M Y
Sbjct: 62 DMAKADKARYEREMKTY 78
>sp|B1MTB0|HMGB1_CALMO High mobility group protein B1 OS=Callicebus moloch GN=HMGB1 PE=3
SV=1
Length = 215
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKA 110
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W + +K P+E KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 111 AKRKLDYEKLMTAYNKK 127
AK K YEK + AY K
Sbjct: 149 AKLKEKYEKDIAAYRAK 165
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 107
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++ EK FE
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
Query: 108 AKAAKRKLDYEKLMTAY 124
A K YE+ M Y
Sbjct: 62 DMAKADKARYEREMKTY 78
>sp|B0CM99|HMGB1_CALJA High mobility group protein B1 OS=Callithrix jacchus GN=HMGB1 PE=3
SV=1
Length = 215
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKA 110
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W + +K P+E KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 111 AKRKLDYEKLMTAYNKK 127
AK K YEK + AY K
Sbjct: 149 AKLKEKYEKDIAAYRAK 165
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 107
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++ EK FE
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
Query: 108 AKAAKRKLDYEKLMTAY 124
A K YE+ M Y
Sbjct: 62 DMAKADKARYEREMKTY 78
>sp|P10103|HMGB1_BOVIN High mobility group protein B1 OS=Bos taurus GN=HMGB1 PE=1 SV=3
Length = 215
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKA 110
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W + +K P+E KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 148
Query: 111 AKRKLDYEKLMTAYNKK 127
AK K YEK + AY K
Sbjct: 149 AKLKEKYEKDIAAYRAK 165
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 107
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++ EK FE
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
Query: 108 AKAAKRKLDYEKLMTAY 124
A K YE+ M Y
Sbjct: 62 DMAKADKARYEREMKTY 78
>sp|Q5B995|NHP6_EMENI Non-histone chromosomal protein 6 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=nhp6 PE=3 SV=1
Length = 106
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAK 109
KKDPN PKR SA+ F + R ++E+P + + VGK GEKWKSL+D E+ P+E K
Sbjct: 21 KKDPNAPKRGLSAYMFFANDNRDKVREENPGI-SFGQVGKMLGEKWKSLSDKERKPYEDK 79
Query: 110 AAKRKLDYEKLMTAY 124
AA K YE AY
Sbjct: 80 AAADKKRYEDEKAAY 94
>sp|P17741|HMGB2_PIG High mobility group protein B2 OS=Sus scrofa GN=HMGB2 PE=1 SV=2
Length = 210
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKR 113
N PKRPPSAFF+F E R K EHP + ++ K GE W + +K P+E KAAK
Sbjct: 93 NAPKRPPSAFFLFCSEHRPKIKSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 114 KLDYEKLMTAY 124
K YEK + AY
Sbjct: 152 KEKYEKDIAAY 162
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 107
K DPNKP+ S++ F++ R+ +K++HP+ + K E+WK+++ EK+ FE
Sbjct: 2 GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFE 61
Query: 108 AKAAKRKLDYEKLMTAY 124
A K Y++ M Y
Sbjct: 62 DMAKSDKARYDREMKNY 78
>sp|P12682|HMGB1_PIG High mobility group protein B1 OS=Sus scrofa GN=HMGB1 PE=2 SV=3
Length = 215
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKA 110
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W + +K P+E KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKHPYEKKA 148
Query: 111 AKRKLDYEKLMTAYNKK 127
AK K YEK + AY K
Sbjct: 149 AKLKEKYEKDIAAYRAK 165
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 107
K DP KP+ S++ F++ R+ +K++HP+ S K E+WK+++ EK FE
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFE 61
Query: 108 AKAAKRKLDYEKLMTAY 124
A K YE+ M Y
Sbjct: 62 DMAKADKARYEREMKTY 78
>sp|P07156|HMGB1_CRIGR High mobility group protein B1 (Fragment) OS=Cricetulus griseus
GN=HMGB1 PE=1 SV=1
Length = 180
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKA 110
KDPN PKRPPSAFF+F E+R K EHP + ++ V K GE W + +K P+E KA
Sbjct: 55 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKA 113
Query: 111 AKRKLDYEKLMTAYNKK 127
AK K YEK + AY K
Sbjct: 114 AKLKEKYEKDIAAYRAK 130
>sp|P11633|NHP6B_YEAST Non-histone chromosomal protein 6B OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NHP6B PE=1 SV=3
Length = 99
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAK 109
KKDPN PKR SA+ F E R + + E+P+V VG+ GE+WK+LT EK P+E+K
Sbjct: 21 KKDPNAPKRGLSAYMFFANENRDIVRSENPDV-TFGQVGRILGERWKALTAEEKQPYESK 79
Query: 110 AAKRKLDYEKLMTAYN 125
A K YE YN
Sbjct: 80 AQADKKRYESEKELYN 95
>sp|Q75B82|NHP6_ASHGO Non-histone chromosomal protein 6 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NHP6
PE=3 SV=1
Length = 94
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAA 111
DPN PKR SA+ F E R + + E+P + + VG+ GEKWK+L+D EK P+EAKA
Sbjct: 17 DPNAPKRAMSAYMFFANENRDIVRAENPGI-SFGQVGRVLGEKWKALSDDEKQPYEAKAE 75
Query: 112 KRKLDYEKLMTAYN 125
K YE YN
Sbjct: 76 ADKKRYESEKELYN 89
>sp|Q6CVH3|NHP6_KLULA Non-histone chromosomal protein 6 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=NHP6 PE=3 SV=1
Length = 93
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAK 109
KKDPN PKR SA+ F E R + + E+P + VG+ GEKWK+L + EKAP+EAK
Sbjct: 12 KKDPNAPKRALSAYMFFANENRDIVRAENPGI-TFGQVGRILGEKWKALNEDEKAPYEAK 70
Query: 110 AAKRKLDYE 118
A K YE
Sbjct: 71 AEADKKRYE 79
>sp|P30681|HMGB2_MOUSE High mobility group protein B2 OS=Mus musculus GN=Hmgb2 PE=1 SV=3
Length = 210
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKR 113
N PKRPPSAFF+F E R K EHP + ++ K GE W + +K P+E KAAK
Sbjct: 93 NAPKRPPSAFFLFCSENRPKIKIEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKL 151
Query: 114 KLDYEKLMTAY 124
K YEK + AY
Sbjct: 152 KEKYEKDIAAY 162
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 107
K DPNKP+ S++ F++ R+ +K++HP+ + K E+WK+++ EK+ FE
Sbjct: 2 GKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFE 61
Query: 108 AKAAKRKLDYEKLMTAY 124
A K Y++ M Y
Sbjct: 62 DLAKSDKARYDREMKNY 78
>sp|P11632|NHP6A_YEAST Non-histone chromosomal protein 6A OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NHP6A PE=1 SV=1
Length = 93
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAA 111
DPN PKR SA+ F E R + + E+P++ VGK GEKWK+LT EK P+EAKA
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENPDI-TFGQVGKKLGEKWKALTPEEKQPYEAKAQ 75
Query: 112 KRKLDYEKLMTAYN 125
K YE YN
Sbjct: 76 ADKKRYESEKELYN 89
>sp|Q8WW32|HMGB4_HUMAN High mobility group protein B4 OS=Homo sapiens GN=HMGB4 PE=2 SV=2
Length = 186
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAA 111
DP +P+RPPS+F +F ++ K+E+PN V V KA G+ W + TD EK P+E + A
Sbjct: 89 DPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVVQ-VAKATGKMWSTATDLEKHPYEQRVA 147
Query: 112 KRKLDYEKLMTAYNKK 127
+ Y + + Y K+
Sbjct: 148 LLRAKYFEELELYRKQ 163
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVGKAGGEKWKSLTDAEKAPFEAKAAKR 113
KPK S++ FL +R +K++ PN + EKW+S++ EKA +EA A
Sbjct: 8 KPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKYEALAKLD 67
Query: 114 KLDYEKLMTAY 124
K Y++ M Y
Sbjct: 68 KARYQEEMMNY 78
>sp|B2RPK0|HGB1A_HUMAN Putative high mobility group protein B1-like 1 OS=Homo sapiens
GN=HMGB1P1 PE=5 SV=1
Length = 211
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKA 110
KDPN PKRPPSAFF+F E+ K EHP + ++ V K GE W + +K P E KA
Sbjct: 90 KDPNAPKRPPSAFFLFCSEYHPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPGEKKA 148
Query: 111 AKRKLDYEKLMTAYNKK 127
AK K YEK + AY K
Sbjct: 149 AKLKEKYEKDIAAYQAK 165
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA-VSAVGKAGGEKWKSLTDAEKAPFE 107
K DP KP+ S++ F++ R+ +K++H + S E+WK+++ EK FE
Sbjct: 2 GKGDPKKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKFE 61
Query: 108 AKAAKRKLDYEKLMTAY 124
A K YE+ M Y
Sbjct: 62 DMAKADKTHYERQMKTY 78
>sp|Q04678|SSRP1_CHICK FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2
Length = 706
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 42 RTKNVKSAK-KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100
R K V+S K KDPN PKRP SA+ ++L R+ K +HP + +++ + K GE WK+++
Sbjct: 530 RKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGI-SITDLSKKAGELWKAMSK 588
Query: 101 AEKAPFEAKAAKRKLDYEKLMTAYN 125
+K ++ KA K DYEK M Y+
Sbjct: 589 EKKEEWDRKAEDAKRDYEKAMKEYS 613
>sp|P40622|HMG1A_CHITE Mobility group protein 1A OS=Chironomus tentans GN=HMG1A PE=3 SV=1
Length = 114
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRK 114
KPKRP SA+ ++L R+ K+E+P+ K V+ + K GGE W+ + D K+ +EAKAAK K
Sbjct: 4 KPKRPLSAYMLWLNSARESIKKENPDFK-VTEIAKKGGELWRGMKD--KSEWEAKAAKMK 60
Query: 115 LDYEKLMTAYNKKQVD 130
+YEK M + + D
Sbjct: 61 EEYEKAMKEFERNGGD 76
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.124 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,065,634
Number of Sequences: 539616
Number of extensions: 1598421
Number of successful extensions: 7048
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 252
Number of HSP's that attempted gapping in prelim test: 6250
Number of HSP's gapped (non-prelim): 696
length of query: 130
length of database: 191,569,459
effective HSP length: 96
effective length of query: 34
effective length of database: 139,766,323
effective search space: 4752054982
effective search space used: 4752054982
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)