Query 032935
Match_columns 130
No_of_seqs 145 out of 1146
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:46:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032935.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032935hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00199 high mobility group p 99.9 8.4E-26 1.8E-30 153.9 11.0 84 42-125 9-93 (94)
2 cd01389 MATA_HMG-box MATA_HMG- 99.9 1.5E-21 3.2E-26 127.8 7.8 70 55-125 1-70 (77)
3 cd01388 SOX-TCF_HMG-box SOX-TC 99.8 5.7E-21 1.2E-25 123.7 8.0 69 56-125 2-70 (72)
4 PF00505 HMG_box: HMG (high mo 99.8 1.7E-20 3.8E-25 119.2 8.9 69 56-125 1-69 (69)
5 PF09011 HMG_box_2: HMG-box do 99.8 4.3E-20 9.3E-25 119.9 9.0 72 53-125 1-73 (73)
6 smart00398 HMG high mobility g 99.8 5E-20 1.1E-24 116.7 9.1 70 55-125 1-70 (70)
7 cd01390 HMGB-UBF_HMG-box HMGB- 99.8 4.7E-20 1E-24 116.1 8.9 65 56-121 1-65 (66)
8 COG5648 NHP6B Chromatin-associ 99.8 8.2E-20 1.8E-24 139.1 8.0 85 44-129 59-143 (211)
9 KOG0381 HMG box-containing pro 99.8 3.5E-18 7.6E-23 115.5 10.6 76 52-128 17-95 (96)
10 cd00084 HMG-box High Mobility 99.8 4.8E-18 1E-22 106.4 8.9 65 56-121 1-65 (66)
11 KOG0527 HMG-box transcription 99.7 1.3E-17 2.8E-22 135.6 6.1 76 49-125 56-131 (331)
12 KOG0526 Nucleosome-binding fac 99.7 7.5E-17 1.6E-21 136.3 7.3 79 44-127 524-602 (615)
13 KOG4715 SWI/SNF-related matrix 99.2 2.4E-11 5.2E-16 98.0 7.7 79 48-127 57-135 (410)
14 KOG3248 Transcription factor T 99.1 8.7E-11 1.9E-15 95.4 5.8 72 54-126 190-261 (421)
15 KOG0528 HMG-box transcription 99.1 5E-11 1.1E-15 100.3 2.1 78 47-125 317-394 (511)
16 KOG2746 HMG-box transcription 98.5 1.8E-07 4E-12 81.5 4.8 75 45-120 171-247 (683)
17 PF14887 HMG_box_5: HMG (high 98.3 6.5E-06 1.4E-10 54.2 7.7 73 55-129 3-75 (85)
18 COG5648 NHP6B Chromatin-associ 97.3 0.00021 4.6E-09 55.0 3.1 68 54-122 142-209 (211)
19 PF06382 DUF1074: Protein of u 97.1 0.001 2.2E-08 50.2 5.1 48 60-112 83-130 (183)
20 PF04690 YABBY: YABBY protein; 96.7 0.005 1.1E-07 46.2 5.6 47 52-99 118-164 (170)
21 PF08073 CHDNT: CHDNT (NUC034) 96.2 0.006 1.3E-07 37.7 3.0 40 60-100 13-52 (55)
22 PF06244 DUF1014: Protein of u 94.5 0.055 1.2E-06 38.6 3.8 48 53-101 69-117 (122)
23 PF04769 MAT_Alpha1: Mating-ty 91.6 0.58 1.3E-05 36.0 5.8 57 49-112 37-93 (201)
24 TIGR03481 HpnM hopanoid biosyn 90.8 0.67 1.4E-05 35.3 5.4 45 83-127 65-111 (198)
25 KOG3223 Uncharacterized conser 89.9 0.6 1.3E-05 35.9 4.3 53 54-110 162-215 (221)
26 PRK15117 ABC transporter perip 89.2 1.1 2.4E-05 34.4 5.5 48 79-127 66-115 (211)
27 PF05494 Tol_Tol_Ttg2: Toluene 79.1 3.5 7.6E-05 30.1 4.0 47 79-126 36-84 (170)
28 PF13875 DUF4202: Domain of un 66.9 12 0.00026 28.5 4.4 40 62-105 131-170 (185)
29 PF01352 KRAB: KRAB box; Inte 65.6 4.9 0.00011 23.1 1.6 29 84-112 3-32 (41)
30 PF12881 NUT_N: NUT protein N 65.2 19 0.00042 29.7 5.5 53 61-114 230-282 (328)
31 COG2854 Ttg2D ABC-type transpo 62.2 12 0.00025 29.0 3.6 41 88-128 77-118 (202)
32 PF11304 DUF3106: Protein of u 56.1 49 0.0011 22.7 5.6 10 94-103 55-64 (107)
33 PF06945 DUF1289: Protein of u 49.5 24 0.00053 21.0 2.8 25 83-112 23-47 (51)
34 PRK09706 transcriptional repre 46.4 61 0.0013 22.5 5.0 42 86-127 87-128 (135)
35 PRK12750 cpxP periplasmic repr 43.0 75 0.0016 23.6 5.2 35 87-121 126-160 (170)
36 PRK12751 cpxP periplasmic stre 42.8 62 0.0013 24.0 4.7 33 86-118 118-150 (162)
37 PF00887 ACBP: Acyl CoA bindin 40.9 67 0.0015 20.7 4.3 54 62-117 29-86 (87)
38 cd07081 ALDH_F20_ACDH_EutE-lik 39.6 77 0.0017 26.9 5.4 40 85-124 5-44 (439)
39 PRK10363 cpxP periplasmic repr 36.6 93 0.002 23.3 4.8 35 85-119 111-145 (166)
40 cd07133 ALDH_CALDH_CalB Conife 33.1 1.2E+02 0.0027 25.4 5.6 41 85-125 4-44 (434)
41 PF12290 DUF3802: Protein of u 33.1 1.6E+02 0.0035 20.7 5.3 42 70-111 46-100 (113)
42 COG4281 ACB Acyl-CoA-binding p 32.9 49 0.0011 21.9 2.5 60 56-117 17-85 (87)
43 PF15581 Imm35: Immunity prote 32.8 89 0.0019 21.1 3.8 25 83-107 31-55 (93)
44 TIGR00787 dctP tripartite ATP- 30.4 1.1E+02 0.0024 23.4 4.6 28 92-119 213-240 (257)
45 cd07132 ALDH_F3AB Aldehyde deh 30.4 1.3E+02 0.0029 25.3 5.4 40 86-125 5-44 (443)
46 KOG1827 Chromatin remodeling c 29.6 3.5 7.7E-05 36.8 -4.3 44 59-103 552-595 (629)
47 cd07087 ALDH_F3-13-14_CALDH-li 29.5 1.6E+02 0.0034 24.6 5.6 39 86-124 5-43 (426)
48 PF12650 DUF3784: Domain of un 29.2 40 0.00086 22.2 1.7 15 95-109 26-40 (97)
49 cd07122 ALDH_F20_ACDH Coenzyme 28.9 1.4E+02 0.0031 25.3 5.4 40 86-125 6-45 (436)
50 PF11740 KfrA_N: Plasmid repli 28.8 1.8E+02 0.004 19.4 5.6 60 61-122 35-98 (120)
51 PRK10236 hypothetical protein; 28.7 57 0.0012 25.9 2.7 25 87-111 118-142 (237)
52 COG1638 DctP TRAP-type C4-dica 27.5 1.3E+02 0.0028 24.6 4.7 39 88-126 240-278 (332)
53 cd07136 ALDH_YwdH-P39616 Bacil 26.4 1.9E+02 0.004 24.6 5.6 40 85-124 4-43 (449)
54 PF05388 Carbpep_Y_N: Carboxyp 25.2 1.1E+02 0.0023 21.4 3.3 29 84-112 45-73 (113)
55 PF14399 Transpep_BrtH: NlpC/p 24.8 2.6E+02 0.0056 21.8 5.9 47 78-124 259-313 (317)
56 cd07085 ALDH_F6_MMSDH Methylma 24.2 2E+02 0.0043 24.4 5.4 38 86-123 45-82 (478)
57 cd07077 ALDH-like NAD(P)+-depe 23.8 1.5E+02 0.0033 24.4 4.5 36 88-123 3-38 (397)
58 KOG3838 Mannose lectin ERGIC-5 23.6 90 0.0019 26.9 3.1 33 98-130 269-301 (497)
59 PRK00197 proA gamma-glutamyl p 23.5 1.9E+02 0.0042 24.1 5.1 40 86-125 11-50 (417)
60 PRK13252 betaine aldehyde dehy 23.1 2.3E+02 0.005 24.1 5.6 39 86-124 51-89 (488)
61 KOG1610 Corticosteroid 11-beta 23.0 2.5E+02 0.0055 23.3 5.6 49 66-114 188-248 (322)
62 cd07150 ALDH_VaniDH_like Pseud 22.9 2.1E+02 0.0045 23.9 5.3 38 86-123 28-65 (451)
63 PRK13968 putative succinate se 22.9 2.1E+02 0.0046 24.2 5.3 39 86-124 36-74 (462)
64 PRK10455 periplasmic protein; 22.7 1.7E+02 0.0038 21.5 4.2 28 86-113 118-145 (161)
65 PF03480 SBP_bac_7: Bacterial 22.5 1.5E+02 0.0033 23.0 4.1 31 92-122 213-243 (286)
66 cd07152 ALDH_BenzADH NAD-depen 22.3 2.3E+02 0.005 23.7 5.4 39 86-124 20-58 (443)
67 KOG2880 SMAD6 interacting prot 22.1 3.4E+02 0.0074 23.1 6.2 64 60-127 52-118 (424)
68 cd07137 ALDH_F3FHI Plant aldeh 22.0 2.4E+02 0.0052 23.7 5.4 40 85-124 5-44 (432)
69 cd07084 ALDH_KGSADH-like ALDH 21.8 2.1E+02 0.0045 24.1 5.0 40 85-124 5-44 (442)
70 cd07098 ALDH_F15-22 Aldehyde d 21.3 2.6E+02 0.0057 23.5 5.6 39 86-124 25-63 (465)
71 PRK11241 gabD succinate-semial 21.3 2.3E+02 0.0051 24.2 5.3 37 87-123 56-92 (482)
72 cd07129 ALDH_KGSADH Alpha-Keto 21.1 2.3E+02 0.0051 23.9 5.2 38 86-123 6-43 (454)
73 TIGR01780 SSADH succinate-semi 20.9 2.8E+02 0.006 23.3 5.6 39 85-123 25-63 (448)
74 cd08317 Death_ank Death domain 20.8 49 0.0011 21.3 0.9 22 79-101 3-24 (84)
75 cd07099 ALDH_DDALDH Methylomon 20.4 2.7E+02 0.0057 23.3 5.4 38 86-123 25-62 (453)
76 cd07108 ALDH_MGR_2402 Magnetos 20.2 2.6E+02 0.0057 23.4 5.3 39 86-124 26-64 (457)
77 cd07104 ALDH_BenzADH-like ALDH 20.1 2.5E+02 0.0055 23.1 5.2 38 86-123 7-44 (431)
No 1
>PTZ00199 high mobility group protein; Provisional
Probab=99.93 E-value=8.4e-26 Score=153.89 Aligned_cols=84 Identities=44% Similarity=0.689 Sum_probs=78.4
Q ss_pred cccccccCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHH
Q 032935 42 RTKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKL 120 (130)
Q Consensus 42 ~~~k~~k~~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~-~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e 120 (130)
.+++++++.+||+.|+||+|||||||+++|..|..+||+++ +|.+|+++||++|++||+++|.+|+++|..++.+|..+
T Consensus 9 ~~k~~~k~~kdp~~PKrP~sAY~~F~~~~R~~i~~~~P~~~~~~~evsk~ige~Wk~ls~eeK~~y~~~A~~dk~rY~~e 88 (94)
T PTZ00199 9 LVRKNKRKKKDPNAPKRALSAYMFFAKEKRAEIIAENPELAKDVAAVGKMVGEAWNKLSEEEKAPYEKKAQEDKVRYEKE 88 (94)
T ss_pred cccccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCcCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677899999999999999999999999999999985 48999999999999999999999999999999999999
Q ss_pred HHHHh
Q 032935 121 MTAYN 125 (130)
Q Consensus 121 ~~~Y~ 125 (130)
|.+|+
T Consensus 89 ~~~Y~ 93 (94)
T PTZ00199 89 KAEYA 93 (94)
T ss_pred HHHHh
Confidence 99996
No 2
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=99.86 E-value=1.5e-21 Score=127.85 Aligned_cols=70 Identities=23% Similarity=0.395 Sum_probs=67.8
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 032935 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (130)
Q Consensus 55 ~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~ 125 (130)
+|+||+||||||+++.|..|+.+||++ ++.+|+++||++|+.||+++|.+|.++|+.++++|..++++|.
T Consensus 1 ~~kRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~~g~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yk 70 (77)
T cd01389 1 KIPRPRNAFILYRQDKHAQLKTENPGL-TNNEISRIIGRMWRSESPEVKAYYKELAEEEKERHAREYPDYK 70 (77)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCCCCc
Confidence 489999999999999999999999999 6899999999999999999999999999999999999999986
No 3
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=99.85 E-value=5.7e-21 Score=123.69 Aligned_cols=69 Identities=36% Similarity=0.523 Sum_probs=66.7
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 032935 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (130)
Q Consensus 56 PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~ 125 (130)
.+||+||||+|++++|..++.+||++ ++.+|+++||++|+.||+++|.+|.++|..++++|..++++|.
T Consensus 2 iKrP~naf~~F~~~~r~~~~~~~p~~-~~~eisk~l~~~Wk~ls~~eK~~y~~~a~~~k~~y~~~~p~y~ 70 (72)
T cd01388 2 IKRPMNAFMLFSKRHRRKVLQEYPLK-ENRAISKILGDRWKALSNEEKQPYYEEAKKLKELHMKLYPDYK 70 (72)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 68999999999999999999999999 6899999999999999999999999999999999999999985
No 4
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=99.84 E-value=1.7e-20 Score=119.22 Aligned_cols=69 Identities=41% Similarity=0.755 Sum_probs=65.3
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 032935 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (130)
Q Consensus 56 PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~ 125 (130)
|+||+|||+||+.+++..++.+||++ ++.+|+++||.+|++||+++|.+|.+.|..++..|..++.+|+
T Consensus 1 PkrP~~af~lf~~~~~~~~k~~~p~~-~~~~i~~~~~~~W~~l~~~eK~~y~~~a~~~~~~y~~~~~~y~ 69 (69)
T PF00505_consen 1 PKRPPNAFMLFCKEKRAKLKEENPDL-SNKEISKILAQMWKNLSEEEKAPYKEEAEEEKERYEKEMPEYK 69 (69)
T ss_dssp SSSS--HHHHHHHHHHHHHHHHSTTS-THHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhccc-ccccchhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999 5899999999999999999999999999999999999999995
No 5
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=99.83 E-value=4.3e-20 Score=119.86 Aligned_cols=72 Identities=44% Similarity=0.762 Sum_probs=63.2
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHh-CCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 032935 53 PNKPKRPPSAFFVFLEEFRKVYKQE-HPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (130)
Q Consensus 53 p~~PKRP~say~lF~~e~r~~~k~~-~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~ 125 (130)
|++|++|+|||+||+.+++..++.. ++.. ++.++++.|+..|++||+++|.+|+++|..++.+|..+|..|+
T Consensus 1 p~kpK~~~say~lF~~~~~~~~k~~G~~~~-~~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~~k~~y~~e~~~~~ 73 (73)
T PF09011_consen 1 PKKPKRPPSAYNLFMKEMRKEVKEEGGQKQ-SFREVMKEISERWKSLSEEEKEPYEERAKEDKERYEREMKEWN 73 (73)
T ss_dssp SSS--SSSSHHHHHHHHHHHHHHHHT-T-S-SHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHhcccCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999999988 5655 6899999999999999999999999999999999999999995
No 6
>smart00398 HMG high mobility group.
Probab=99.83 E-value=5e-20 Score=116.66 Aligned_cols=70 Identities=47% Similarity=0.772 Sum_probs=67.5
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 032935 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (130)
Q Consensus 55 ~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~ 125 (130)
+|++|+|+|+||++++|..+..+||++ ++.+|+++||.+|+.||+++|.+|.+.|..++.+|..++..|.
T Consensus 1 ~pkrp~~~y~~f~~~~r~~~~~~~~~~-~~~~i~~~~~~~W~~l~~~ek~~y~~~a~~~~~~y~~~~~~y~ 70 (70)
T smart00398 1 KPKRPMSAFMLFSQENRAKIKAENPDL-SNAEISKKLGERWKLLSEEEKAPYEEKAKKDKERYEEEMPEYK 70 (70)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 589999999999999999999999999 6899999999999999999999999999999999999999884
No 7
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=99.83 E-value=4.7e-20 Score=116.13 Aligned_cols=65 Identities=51% Similarity=0.787 Sum_probs=63.2
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHH
Q 032935 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLM 121 (130)
Q Consensus 56 PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~ 121 (130)
|++|+|||++|++++|..+..+||++ ++.+|++.||.+|++||+++|.+|.+.|..++.+|..+|
T Consensus 1 Pkrp~saf~~f~~~~r~~~~~~~p~~-~~~~i~~~~~~~W~~ls~~eK~~y~~~a~~~~~~y~~e~ 65 (66)
T cd01390 1 PKRPLSAYFLFSQEQRPKLKKENPDA-SVTEVTKILGEKWKELSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999 689999999999999999999999999999999999887
No 8
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=99.81 E-value=8.2e-20 Score=139.13 Aligned_cols=85 Identities=42% Similarity=0.688 Sum_probs=80.7
Q ss_pred cccccCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 032935 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTA 123 (130)
Q Consensus 44 ~k~~k~~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~ 123 (130)
+...++.+|||.|+||+||||+|+.++|.+|...+|++ +|++|++++|++|++|+++++.+|...+..++++|+.++..
T Consensus 59 k~~~r~k~dpN~PKRp~sayf~y~~~~R~ei~~~~p~l-~~~e~~k~~~e~WK~Ltd~eke~y~k~~~~~~erYq~ek~~ 137 (211)
T COG5648 59 KRLVRKKKDPNGPKRPLSAYFLYSAENRDEIRKENPKL-TFGEVGKLLSEKWKELTDEEKEPYYKEANSDRERYQREKEE 137 (211)
T ss_pred HHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHHhccHhhhhhHHHHHhhHHHHHHHHHHh
Confidence 45567889999999999999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred HhhhcC
Q 032935 124 YNKKQV 129 (130)
Q Consensus 124 Y~~k~~ 129 (130)
|+.+.+
T Consensus 138 y~~k~~ 143 (211)
T COG5648 138 YNKKLP 143 (211)
T ss_pred hhcccC
Confidence 998764
No 9
>KOG0381 consensus HMG box-containing protein [General function prediction only]
Probab=99.78 E-value=3.5e-18 Score=115.45 Aligned_cols=76 Identities=49% Similarity=0.779 Sum_probs=72.4
Q ss_pred CC--CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHH-HHhhhc
Q 032935 52 DP--NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMT-AYNKKQ 128 (130)
Q Consensus 52 dp--~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~-~Y~~k~ 128 (130)
|| +.|++|+|||++|+.+.+..++.+||++ ++.+|+++||++|.+|+++++.+|...+..++.+|..+|. .|+...
T Consensus 17 ~p~~~~pkrp~sa~~~f~~~~~~~~k~~~p~~-~~~~v~k~~g~~W~~l~~~~k~~y~~ka~~~k~~Y~~~~~~~~~~~~ 95 (96)
T KOG0381|consen 17 DPNAQAPKRPLSAFFLFSSEQRSKIKAENPGL-SVGEVAKALGEMWKNLAEEEKQPYEEKASKLKEKYEKELAGEYKASL 95 (96)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 67 5999999999999999999999999998 6899999999999999999999999999999999999999 998764
No 10
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=99.76 E-value=4.8e-18 Score=106.36 Aligned_cols=65 Identities=49% Similarity=0.772 Sum_probs=62.5
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHH
Q 032935 56 PKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLM 121 (130)
Q Consensus 56 PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~ 121 (130)
|++|+|||++|+++++..+..+||++ ++.+|++.||.+|+.|++++|.+|.+.|..++.+|..++
T Consensus 1 pkrp~~af~~f~~~~~~~~~~~~~~~-~~~~i~~~~~~~W~~l~~~~k~~y~~~a~~~~~~y~~~~ 65 (66)
T cd00084 1 PKRPLSAYFLFSQEHRAEVKAENPGL-SVGEISKILGEMWKSLSEEEKKKYEEKAEKDKERYEKEM 65 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999998 689999999999999999999999999999999999875
No 11
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=99.71 E-value=1.3e-17 Score=135.62 Aligned_cols=76 Identities=29% Similarity=0.522 Sum_probs=72.3
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 032935 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (130)
Q Consensus 49 ~~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~ 125 (130)
......+.||||||||||++..|..|..+||+++| .||+++||.+|+.|+++||.+|+++|++++..|.+++.+|+
T Consensus 56 ~k~~~~hIKRPMNAFMVWSq~~RRkma~qnP~mHN-SEISK~LG~~WK~Lse~EKrPFi~EAeRLR~~HmkehPdYK 131 (331)
T KOG0527|consen 56 DKTSTDRIKRPMNAFMVWSQGQRRKLAKQNPKMHN-SEISKRLGAEWKLLSEEEKRPFVDEAERLRAQHMKEYPDYK 131 (331)
T ss_pred CCCCccccCCCcchhhhhhHHHHHHHHHhCcchhh-HHHHHHHHHHHhhcCHhhhccHHHHHHHHHHHHHHhCCCcc
Confidence 45667899999999999999999999999999976 89999999999999999999999999999999999999996
No 12
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=99.68 E-value=7.5e-17 Score=136.34 Aligned_cols=79 Identities=41% Similarity=0.669 Sum_probs=73.7
Q ss_pred cccccCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 032935 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTA 123 (130)
Q Consensus 44 ~k~~k~~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~ 123 (130)
.++.++.+|||+|||++||||||++..|..|+.+ ++ ++++|++.+|++|+.||. |.+|++.|+.++++|+.+|.+
T Consensus 524 ~k~~kk~kdpnapkra~sa~m~w~~~~r~~ik~d--gi-~~~dv~kk~g~~wk~ms~--k~~we~ka~~dk~ry~~em~~ 598 (615)
T KOG0526|consen 524 KKKGKKKKDPNAPKRATSAYMLWLNASRESIKED--GI-SVGDVAKKAGEKWKQMSA--KEEWEDKAAVDKQRYEDEMKE 598 (615)
T ss_pred ccCcccCCCCCCCccchhHHHHHHHhhhhhHhhc--Cc-hHHHHHHHHhHHHhhhcc--cchhhHHHHHHHHHHHHHHHh
Confidence 3666789999999999999999999999999987 77 789999999999999998 999999999999999999999
Q ss_pred Hhhh
Q 032935 124 YNKK 127 (130)
Q Consensus 124 Y~~k 127 (130)
|+.-
T Consensus 599 yk~g 602 (615)
T KOG0526|consen 599 YKNG 602 (615)
T ss_pred hcCC
Confidence 9853
No 13
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=99.24 E-value=2.4e-11 Score=97.98 Aligned_cols=79 Identities=24% Similarity=0.501 Sum_probs=73.9
Q ss_pred cCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 032935 48 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 127 (130)
Q Consensus 48 k~~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~k 127 (130)
...+.|.+|-+|+-+||.|+...++.|+..||++ .+-+|+++||.+|..|++++|..|...++.++..|++.|..|...
T Consensus 57 t~pkpPkppekpl~pymrySrkvWd~VkA~nPe~-kLWeiGK~Ig~mW~dLpd~EK~ey~~EYeaEKieY~~smkayh~s 135 (410)
T KOG4715|consen 57 TRPKPPKPPEKPLMPYMRYSRKVWDQVKASNPEL-KLWEIGKIIGGMWLDLPDEEKQEYLNEYEAEKIEYNESMKAYHNS 135 (410)
T ss_pred cCCCCCCCCCcccchhhHHhhhhhhhhhccCcch-HHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4556788899999999999999999999999999 589999999999999999999999999999999999999999763
No 14
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=99.13 E-value=8.7e-11 Score=95.44 Aligned_cols=72 Identities=24% Similarity=0.429 Sum_probs=64.9
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 032935 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (130)
Q Consensus 54 ~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~ 126 (130)
...|+|+||||||+.|.|..|.++.- ++.-.+|.++||.+|..||.+|.+.|.++|..+++-|...+..|-.
T Consensus 190 phiKKPLNAFmlyMKEmRa~vvaEct-lKeSAaiNqiLGrRWH~LSrEEQAKYyElArKerqlH~qlYP~WSA 261 (421)
T KOG3248|consen 190 PHIKKPLNAFMLYMKEMRAKVVAECT-LKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSA 261 (421)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 46789999999999999999998885 5445799999999999999999999999999999999998887754
No 15
>KOG0528 consensus HMG-box transcription factor SOX5 [Transcription]
Probab=99.07 E-value=5e-11 Score=100.27 Aligned_cols=78 Identities=24% Similarity=0.437 Sum_probs=70.4
Q ss_pred ccCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 032935 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (130)
Q Consensus 47 ~k~~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~ 125 (130)
+-....+...|||+||||+|.++.|-.|....||+++ .+|+++||.+|+.|+..||++|.+.-.++...|.+.+++|+
T Consensus 317 rg~~ss~PHIKRPMNAFMVWAkDERRKILqA~PDMHN-SnISKILGSRWKaMSN~eKQPYYEEQaRLSk~HlEk~PdYr 394 (511)
T KOG0528|consen 317 RGRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHN-SNISKILGSRWKAMSNTEKQPYYEEQARLSKLHLEKYPDYR 394 (511)
T ss_pred cCcCCCCccccCCcchhhcccchhhhhhhhcCccccc-cchhHHhcccccccccccccchHHHHHHHHHhhhccCcccc
Confidence 3345566788999999999999999999999999987 69999999999999999999999998888889988888886
No 16
>KOG2746 consensus HMG-box transcription factor Capicua and related proteins [Transcription]
Probab=98.46 E-value=1.8e-07 Score=81.54 Aligned_cols=75 Identities=29% Similarity=0.402 Sum_probs=67.9
Q ss_pred ccccCCCCCCCCCCCCChHHHHHHHHH--HHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHH
Q 032935 45 NVKSAKKDPNKPKRPPSAFFVFLEEFR--KVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKL 120 (130)
Q Consensus 45 k~~k~~kdp~~PKRP~say~lF~~e~r--~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e 120 (130)
.+..-++|..+.++|||+|++|++.+| ..+...||+..| .-|++|+|+.|-.|-+.||+.|.++|.+.++.|.+.
T Consensus 171 grspnkr~k~HirrPMnaf~ifskrhr~~g~vhq~~pn~DN-rtIskiLgewWytL~~~Ekq~yhdLa~Qvk~Ahfka 247 (683)
T KOG2746|consen 171 GRSPNKRDKDHIRRPMNAFHIFSKRHRGEGRVHQRHPNQDN-RTISKILGEWWYTLGPNEKQKYHDLAFQVKEAHFKA 247 (683)
T ss_pred cCCCCcCcchhhhhhhHHHHHHHhhcCCccchhccCccccc-hhHHHHHhhhHhhhCchhhhhHHHHHHHHHHHHhhh
Confidence 344566788899999999999999999 889999999965 899999999999999999999999999999998875
No 17
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=98.28 E-value=6.5e-06 Score=54.24 Aligned_cols=73 Identities=22% Similarity=0.281 Sum_probs=59.7
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 032935 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQV 129 (130)
Q Consensus 55 ~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~k~~ 129 (130)
.|-.|-++--||.+.....+...+++. ...+ .+.+...|++|+..+|-+|...|.++..+|+.+|.+|+.-++
T Consensus 3 lPE~PKt~qe~Wqq~vi~dYla~~~~d-r~K~-~kam~~~W~~me~Kekl~WIkKA~EdqKrYE~el~e~r~~~~ 75 (85)
T PF14887_consen 3 LPETPKTAQEIWQQSVIGDYLAKFRND-RKKA-LKAMEAQWSQMEKKEKLKWIKKAAEDQKRYERELREMRSAPA 75 (85)
T ss_dssp -S----THHHHHHHHHHHHHHHHTTST-HHHH-HHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHCCS-CCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhHh-HHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 477788999999999999999999887 3334 568999999999999999999999999999999999987554
No 18
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=97.29 E-value=0.00021 Score=55.05 Aligned_cols=68 Identities=21% Similarity=0.290 Sum_probs=58.5
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHH
Q 032935 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMT 122 (130)
Q Consensus 54 ~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~ 122 (130)
.+|..|...|+-|-...|..+...+|+. +..+++++++..|++|++.-+.+|.+.+..++..|...+.
T Consensus 142 ~~~~~~~~~~~e~~~~~r~~~~~~~~~~-~~~e~~k~~~~~w~el~~skK~~~~~~~Kk~k~~~~~~~~ 209 (211)
T COG5648 142 LPNKAPIGPFIENEPKIRPKVEGPSPDK-ALVEETKIISKAWSELDESKKKKYIDKYKKLKEEYDSFYP 209 (211)
T ss_pred cCCCCCCchhhhccHHhccccCCCCcch-hhhHHhhhhhhhhhhhChhhhhHHHHHHHHHHHHHhhhcc
Confidence 4556677777778888888888888887 6789999999999999999999999999999999987764
No 19
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=97.13 E-value=0.001 Score=50.20 Aligned_cols=48 Identities=27% Similarity=0.502 Sum_probs=41.3
Q ss_pred CChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHH
Q 032935 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAK 112 (130)
Q Consensus 60 ~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~ 112 (130)
-++|+-|+.+++.. |.+| ...|+....+..|..|++.+|..|..++..
T Consensus 83 nnaYLNFLReFRrk----h~~L-~p~dlI~~AAraW~rLSe~eK~rYrr~~~~ 130 (183)
T PF06382_consen 83 NNAYLNFLREFRRK----HCGL-SPQDLIQRAARAWCRLSEAEKNRYRRMAPS 130 (183)
T ss_pred chHHHHHHHHHHHH----ccCC-CHHHHHHHHHHHHHhCCHHHHHHHHhhcch
Confidence 47899999999874 5788 468999999999999999999999986543
No 20
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=96.65 E-value=0.005 Score=46.22 Aligned_cols=47 Identities=28% Similarity=0.489 Sum_probs=40.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCC
Q 032935 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT 99 (130)
Q Consensus 52 dp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls 99 (130)
.|.+-.|-+|||..|+.+.-..|+..||+++ -.|.....+..|...+
T Consensus 118 PPEKRqR~psaYn~f~k~ei~rik~~~p~is-hkeaFs~aAknW~h~p 164 (170)
T PF04690_consen 118 PPEKRQRVPSAYNRFMKEEIQRIKAENPDIS-HKEAFSAAAKNWAHFP 164 (170)
T ss_pred CccccCCCchhHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhhhCc
Confidence 3444457799999999999999999999995 5899999999998765
No 21
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.18 E-value=0.006 Score=37.72 Aligned_cols=40 Identities=15% Similarity=0.365 Sum_probs=35.5
Q ss_pred CChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCCh
Q 032935 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTD 100 (130)
Q Consensus 60 ~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~ 100 (130)
++.|-+|++..|+.|...||++ .++.|..+++..|+.-+.
T Consensus 13 lt~yK~Fsq~vRP~l~~~NPk~-~~sKl~~l~~AKwrEF~~ 52 (55)
T PF08073_consen 13 LTNYKAFSQHVRPLLAKANPKA-PMSKLMMLLQAKWREFQE 52 (55)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC-cHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999 678999999999987553
No 22
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=94.55 E-value=0.055 Score=38.60 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=40.3
Q ss_pred CCCC-CCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChh
Q 032935 53 PNKP-KRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDA 101 (130)
Q Consensus 53 p~~P-KRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~ 101 (130)
..+| +|-.-||.-|.....+.++.++|+| -.+++-.+|..+|...+++
T Consensus 69 drHPErR~KAAy~afeE~~Lp~lK~E~PgL-rlsQ~kq~l~K~w~KSPeN 117 (122)
T PF06244_consen 69 DRHPERRMKAAYKAFEERRLPELKEENPGL-RLSQYKQMLWKEWQKSPEN 117 (122)
T ss_pred CCCcchhHHHHHHHHHHHHhHHHHhhCCCc-hHHHHHHHHHHHHhcCCCC
Confidence 4444 4445789999999999999999999 5789999999999887754
No 23
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=91.64 E-value=0.58 Score=36.01 Aligned_cols=57 Identities=21% Similarity=0.375 Sum_probs=40.3
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHH
Q 032935 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAK 112 (130)
Q Consensus 49 ~~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~ 112 (130)
.......++||+|+||+|..-.-.. .|+++ ..+++..|+..|..=+ -+..|.-++..
T Consensus 37 ~~~~~~~~kr~lN~Fm~FRsyy~~~----~~~~~-Qk~~S~~l~~lW~~dp--~k~~W~l~ak~ 93 (201)
T PF04769_consen 37 RKRSPEKAKRPLNGFMAFRSYYSPI----FPPLP-QKELSGILTKLWEKDP--FKNKWSLMAKA 93 (201)
T ss_pred ccccccccccchhHHHHHHHHHHhh----cCCcC-HHHHHHHHHHHHhCCc--cHhHHHHHhhh
Confidence 3445667899999999998777533 36663 5799999999998633 24556655543
No 24
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=90.83 E-value=0.67 Score=35.30 Aligned_cols=45 Identities=18% Similarity=0.389 Sum_probs=38.2
Q ss_pred cHHHHHH-HHHHhhcCCChhhhHHHHHHHHH-HHHHHHHHHHHHhhh
Q 032935 83 AVSAVGK-AGGEKWKSLTDAEKAPFEAKAAK-RKLDYEKLMTAYNKK 127 (130)
Q Consensus 83 ~~~ei~k-~i~~~Wk~ls~~eK~~Y~~~a~~-~k~~y~~e~~~Y~~k 127 (130)
+|..|++ .+|..|+.+|+++++.|.+.... ....|-..+..|...
T Consensus 65 Df~~mar~vLG~~W~~~s~~Qr~~F~~~F~~~l~~tY~~~l~~y~~~ 111 (198)
T TIGR03481 65 DLPAMARLTLGSSWTSLSPEQRRRFIGAFRELSIATYASQFKSYAGE 111 (198)
T ss_pred CHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 4667766 78999999999999999998888 778899999888653
No 25
>KOG3223 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.89 E-value=0.6 Score=35.91 Aligned_cols=53 Identities=30% Similarity=0.461 Sum_probs=44.1
Q ss_pred CCC-CCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHH
Q 032935 54 NKP-KRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKA 110 (130)
Q Consensus 54 ~~P-KRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a 110 (130)
.+| +|=.-||.-|-....+.|+.+||++ ..+++-.+|-.+|...++. ||.+.+
T Consensus 162 rHPEkRmrAA~~afEe~~LPrLK~e~P~l-rlsQ~Kqll~Kew~KsPDN---P~Nq~~ 215 (221)
T KOG3223|consen 162 RHPEKRMRAAFKAFEEARLPRLKKENPGL-RLSQYKQLLKKEWQKSPDN---PFNQAA 215 (221)
T ss_pred cChHHHHHHHHHHHHHhhchhhhhcCCCc-cHHHHHHHHHHHHhhCCCC---hhhHHh
Confidence 444 4445679999999999999999999 6899999999999988875 777654
No 26
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=89.25 E-value=1.1 Score=34.39 Aligned_cols=48 Identities=25% Similarity=0.370 Sum_probs=38.9
Q ss_pred CCCccHHHHHH-HHHHhhcCCChhhhHHHHHHHHH-HHHHHHHHHHHHhhh
Q 032935 79 PNVKAVSAVGK-AGGEKWKSLTDAEKAPFEAKAAK-RKLDYEKLMTAYNKK 127 (130)
Q Consensus 79 P~~~~~~ei~k-~i~~~Wk~ls~~eK~~Y~~~a~~-~k~~y~~e~~~Y~~k 127 (130)
|.. +|..+++ .+|.-|+.+|++++..|.+.... ...-|-..+..|...
T Consensus 66 p~~-Df~~~s~~vLG~~wr~as~eQr~~F~~~F~~~Lv~tYa~~l~~y~~q 115 (211)
T PRK15117 66 PYV-QVKYAGALVLGRYYKDATPAQREAYFAAFREYLKQAYGQALAMYHGQ 115 (211)
T ss_pred ccC-CHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 555 5777765 78999999999999999987776 556788999988754
No 27
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=79.06 E-value=3.5 Score=30.05 Aligned_cols=47 Identities=17% Similarity=0.356 Sum_probs=33.5
Q ss_pred CCCccHHHHHH-HHHHhhcCCChhhhHHHHHHHHH-HHHHHHHHHHHHhh
Q 032935 79 PNVKAVSAVGK-AGGEKWKSLTDAEKAPFEAKAAK-RKLDYEKLMTAYNK 126 (130)
Q Consensus 79 P~~~~~~ei~k-~i~~~Wk~ls~~eK~~Y~~~a~~-~k~~y~~e~~~Y~~ 126 (130)
|.+ +|..|++ .||..|+.||++++..|.+.... ....|-..+..|..
T Consensus 36 ~~~-D~~~~ar~~LG~~w~~~s~~q~~~F~~~f~~~l~~~Y~~~l~~y~~ 84 (170)
T PF05494_consen 36 PYF-DFERMARRVLGRYWRKASPAQRQRFVEAFKQLLVRTYAKRLDEYSG 84 (170)
T ss_dssp GGB--HHHHHHHHHGGGTTTS-HHHHHHHHHHHHHHHHHHHHHHHHT-SS
T ss_pred HhC-CHHHHHHHHHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 444 4566655 56789999999999999987776 45667788888764
No 28
>PF13875 DUF4202: Domain of unknown function (DUF4202)
Probab=66.91 E-value=12 Score=28.52 Aligned_cols=40 Identities=18% Similarity=0.416 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHH
Q 032935 62 AFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAP 105 (130)
Q Consensus 62 ay~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~ 105 (130)
+-++|+..+...+...| + -..+..+|...|+.||+..++.
T Consensus 131 acLVFL~~~f~~F~~~~-d---eeK~v~Il~KTw~KMS~~g~~~ 170 (185)
T PF13875_consen 131 ACLVFLEYYFEDFAAKH-D---EEKIVDILRKTWRKMSERGHEA 170 (185)
T ss_pred HHHHhHHHHHHHHHhcC-C---HHHHHHHHHHHHHHCCHHHHHH
Confidence 47889999999998888 2 2578899999999999987754
No 29
>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []. It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.
Probab=65.59 E-value=4.9 Score=23.07 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=16.7
Q ss_pred HHHHHHHHH-HhhcCCChhhhHHHHHHHHH
Q 032935 84 VSAVGKAGG-EKWKSLTDAEKAPFEAKAAK 112 (130)
Q Consensus 84 ~~ei~k~i~-~~Wk~ls~~eK~~Y~~~a~~ 112 (130)
|.+|+--.+ +.|..|.+.+|..|.+...+
T Consensus 3 f~Dvav~fs~eEW~~L~~~Qk~ly~dvm~E 32 (41)
T PF01352_consen 3 FEDVAVYFSQEEWELLDPAQKNLYRDVMLE 32 (41)
T ss_dssp ----TT---HHHHHTS-HHHHHHHHHHHHH
T ss_pred EEEEEEEcChhhcccccceecccchhHHHH
Confidence 334443333 66999999999999886543
No 30
>PF12881 NUT_N: NUT protein N terminus; InterPro: IPR024309 This domain is found in the N-terminal region of Nuclear Testis (NUT) proteins. It is also found in FAM22, which are a family of uncharacterised mammalian proteins.
Probab=65.22 E-value=19 Score=29.65 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=40.0
Q ss_pred ChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHH
Q 032935 61 SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRK 114 (130)
Q Consensus 61 say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k 114 (130)
.||..|+.-..-.+....|.+ ++.|-....-..|.-.|.=+|..|.++|++=.
T Consensus 230 EAlSCFLIpvLrsLar~kPtM-tlEeGl~ra~qEW~~~SnfdRmifyemaekFm 282 (328)
T PF12881_consen 230 EALSCFLIPVLRSLARLKPTM-TLEEGLWRAVQEWQHTSNFDRMIFYEMAEKFM 282 (328)
T ss_pred hhhhhhHHHHHHHHHhcCCCc-cHHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 445555555555555566777 67777778889999999999999999998753
No 31
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=62.24 E-value=12 Score=29.01 Aligned_cols=41 Identities=12% Similarity=0.209 Sum_probs=34.5
Q ss_pred HHHHHHhhcCCChhhhHHHHHHHHH-HHHHHHHHHHHHhhhc
Q 032935 88 GKAGGEKWKSLTDAEKAPFEAKAAK-RKLDYEKLMTAYNKKQ 128 (130)
Q Consensus 88 ~k~i~~~Wk~ls~~eK~~Y~~~a~~-~k~~y~~e~~~Y~~k~ 128 (130)
...+|.-|+.+|+++++.|...... ....|-..+..|+.++
T Consensus 77 ~~vLGk~~k~aspeQ~~~F~~aF~~yl~q~Y~~aL~~Y~~q~ 118 (202)
T COG2854 77 KLVLGKYYKTASPEQRQAFFKAFRTYLEQTYGQALLDYKGQT 118 (202)
T ss_pred HHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 4568899999999999999987766 5567899999998765
No 32
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=56.07 E-value=49 Score=22.66 Aligned_cols=10 Identities=20% Similarity=0.893 Sum_probs=4.0
Q ss_pred hhcCCChhhh
Q 032935 94 KWKSLTDAEK 103 (130)
Q Consensus 94 ~Wk~ls~~eK 103 (130)
.|..||++++
T Consensus 55 ~W~~LspeqR 64 (107)
T PF11304_consen 55 RWAALSPEQR 64 (107)
T ss_pred HHHhCCHHHH
Confidence 3444444433
No 33
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=49.46 E-value=24 Score=20.96 Aligned_cols=25 Identities=24% Similarity=0.546 Sum_probs=18.1
Q ss_pred cHHHHHHHHHHhhcCCChhhhHHHHHHHHH
Q 032935 83 AVSAVGKAGGEKWKSLTDAEKAPFEAKAAK 112 (130)
Q Consensus 83 ~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~ 112 (130)
+..||.. |..|++++|.........
T Consensus 23 T~dEI~~-----W~~~s~~er~~i~~~l~~ 47 (51)
T PF06945_consen 23 TLDEIRD-----WKSMSDDERRAILARLRA 47 (51)
T ss_pred cHHHHHH-----HhhCCHHHHHHHHHHHHH
Confidence 3456665 999999998877665444
No 34
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=46.38 E-value=61 Score=22.55 Aligned_cols=42 Identities=19% Similarity=0.179 Sum_probs=36.8
Q ss_pred HHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 032935 86 AVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 127 (130)
Q Consensus 86 ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~k 127 (130)
+-...+-..|+.|+++++.............|..-+++|-.+
T Consensus 87 ~~~~~ll~~~~~L~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 128 (135)
T PRK09706 87 EDQKELLELFDALPESEQDAQLSEMRARVENFNKLFEELLKA 128 (135)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778899999999999999999999999999999888654
No 35
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=43.01 E-value=75 Score=23.60 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=28.9
Q ss_pred HHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHH
Q 032935 87 VGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLM 121 (130)
Q Consensus 87 i~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~ 121 (130)
+.+...+.+..|++++|..|.+...+-.+.|...+
T Consensus 126 ~~~~~~~~~~vLTpEQRak~~e~~~~r~~~~~~~~ 160 (170)
T PRK12750 126 MLEKRHQMLSILTPEQKAKFQELQQERMQECQDKM 160 (170)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455668999999999999999888888887766
No 36
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=42.83 E-value=62 Score=24.00 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=25.9
Q ss_pred HHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHH
Q 032935 86 AVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYE 118 (130)
Q Consensus 86 ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~ 118 (130)
++.+..-+++..|++++|..|.+..++...+..
T Consensus 118 ~~~~~~~qmy~lLTPEQra~l~~~~e~r~~~~~ 150 (162)
T PRK12751 118 EMAKVRNQMYNLLTPEQKEALNKKHQERIEKLQ 150 (162)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 445666788899999999999998777665554
No 37
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=40.94 E-value=67 Score=20.75 Aligned_cols=54 Identities=13% Similarity=0.245 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCC----hhhhHHHHHHHHHHHHHH
Q 032935 62 AFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT----DAEKAPFEAKAAKRKLDY 117 (130)
Q Consensus 62 ay~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls----~~eK~~Y~~~a~~~k~~y 117 (130)
-|-||.+.....+....|+.-+ -+.+.--+.|..|. ++-+..|.+........|
T Consensus 29 LYalyKQAt~Gd~~~~~P~~~d--~~~~~K~~AW~~l~gms~~eA~~~Yi~~v~~~~~~~ 86 (87)
T PF00887_consen 29 LYALYKQATHGDCDTPRPGFFD--IEGRAKWDAWKALKGMSKEEAMREYIELVEELIPKY 86 (87)
T ss_dssp HHHHHHHHHTSS--S-CTTTTC--HHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcCCCCcchh--HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 3778888777766666676633 34455567787765 445667777776666555
No 38
>cd07081 ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldehyde dehydrogenase (ACDH), Ethanolamine utilization protein EutE, and related proteins. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA. The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH, and may be critical enzymes in the fermentative pathway.
Probab=39.63 E-value=77 Score=26.90 Aligned_cols=40 Identities=13% Similarity=-0.022 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 032935 85 SAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (130)
Q Consensus 85 ~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y 124 (130)
.+.++.....|+.+|..+|..+...+.+..+++..++...
T Consensus 5 i~~A~~A~~~W~~~~~~~R~~iL~~~a~~l~~~~~ela~~ 44 (439)
T cd07081 5 VAAAKVAQQGLSCKSQEMVDLIFRAAAEAAEDARIDLAKL 44 (439)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667788999999999999999999988988888765
No 39
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=36.61 E-value=93 Score=23.32 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHH
Q 032935 85 SAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEK 119 (130)
Q Consensus 85 ~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~ 119 (130)
.++.++-.+++.-|+|++|..|.+..+.....+..
T Consensus 111 Vem~k~~nqmy~lLTPEQKaq~~~~~~~rm~~~~~ 145 (166)
T PRK10363 111 VEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRD 145 (166)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 46677888999999999999999988887777744
No 40
>cd07133 ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-like. Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.
Probab=33.09 E-value=1.2e+02 Score=25.37 Aligned_cols=41 Identities=12% Similarity=-0.112 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 032935 85 SAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (130)
Q Consensus 85 ~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~ 125 (130)
.+.++.....|+.++..+|..+.....+..+.+..++....
T Consensus 4 ~~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~~ 44 (434)
T cd07133 4 LERQKAAFLANPPPSLEERRDRLDRLKALLLDNQDALAEAI 44 (434)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667789999999999999988888888888877643
No 41
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=33.08 E-value=1.6e+02 Score=20.69 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=31.4
Q ss_pred HHHHHHHhCCCCcc-------------HHHHHHHHHHhhcCCChhhhHHHHHHHH
Q 032935 70 FRKVYKQEHPNVKA-------------VSAVGKAGGEKWKSLTDAEKAPFEAKAA 111 (130)
Q Consensus 70 ~r~~~k~~~P~~~~-------------~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~ 111 (130)
+--.+..+||+++. +.++...++..|...+..+...|.+..-
T Consensus 46 ~im~vc~Qnp~L~~~~R~~iirE~Daiv~DLeEVLa~V~~~~aT~eQ~~Fi~Ef~ 100 (113)
T PF12290_consen 46 QIMAVCEQNPELEFSQRFQIIREADAIVYDLEEVLASVWNQKATNEQIAFIEEFI 100 (113)
T ss_pred HHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 33356788898852 3577899999999998888888876543
No 42
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=32.93 E-value=49 Score=21.95 Aligned_cols=60 Identities=20% Similarity=0.361 Sum_probs=39.2
Q ss_pred CCCCCCh-----HHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCC----hhhhHHHHHHHHHHHHHH
Q 032935 56 PKRPPSA-----FFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLT----DAEKAPFEAKAAKRKLDY 117 (130)
Q Consensus 56 PKRP~sa-----y~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls----~~eK~~Y~~~a~~~k~~y 117 (130)
+.+|-|- |.||-+.-......+-|++- .-+.+---+-|..|- ++-++.|.....+++..|
T Consensus 17 ~~kP~~d~LLkLYAL~KQ~s~GD~~~ekPG~~--d~~gr~K~eAW~~LKGksqedA~qeYialVeeLkak~ 85 (87)
T COG4281 17 SEKPSNDELLKLYALFKQGSVGDNDGEKPGFF--DIVGRYKYEAWAGLKGKSQEDARQEYIALVEELKAKY 85 (87)
T ss_pred ccCCCcHHHHHHHHHHHhccccccCCCCCCcc--ccccchhHHHHhhccCccHHHHHHHHHHHHHHHHhhc
Confidence 3455554 77777766666666667773 234555567887664 556778888888877665
No 43
>PF15581 Imm35: Immunity protein 35
Probab=32.82 E-value=89 Score=21.14 Aligned_cols=25 Identities=8% Similarity=0.177 Sum_probs=19.1
Q ss_pred cHHHHHHHHHHhhcCCChhhhHHHH
Q 032935 83 AVSAVGKAGGEKWKSLTDAEKAPFE 107 (130)
Q Consensus 83 ~~~ei~k~i~~~Wk~ls~~eK~~Y~ 107 (130)
++..+...|...|+.|++++-..-.
T Consensus 31 ~i~~l~~lIe~eWRGl~~~qV~~kl 55 (93)
T PF15581_consen 31 TIRNLESLIEHEWRGLPEEQVLYKL 55 (93)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3567889999999999987654333
No 44
>TIGR00787 dctP tripartite ATP-independent periplasmic transporter solute receptor, DctP family. TRAP-T (Tripartite ATP-independent Periplasmic Transporter) family proteins generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. The best characterized example is the DctPQM system of Rhodobacter capsulatus, a C4 dicarboxylate (malate, fumarate, succinate) transporter. This model represents the DctP family, one of at least three major families of extracytoplasmic solute receptor for TRAP family transporters. Other are the SnoM family (see pfam03480) and TAXI (TRAP-associated extracytoplasmic immunogenic) family.
Probab=30.36 E-value=1.1e+02 Score=23.38 Aligned_cols=28 Identities=25% Similarity=0.196 Sum_probs=21.3
Q ss_pred HHhhcCCChhhhHHHHHHHHHHHHHHHH
Q 032935 92 GEKWKSLTDAEKAPFEAKAAKRKLDYEK 119 (130)
Q Consensus 92 ~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~ 119 (130)
...|..||++.+....+.+.+.-..+..
T Consensus 213 ~~~~~~L~~e~q~~i~~a~~~~~~~~~~ 240 (257)
T TIGR00787 213 KAFWKSLPPDLQAVVKEAAKEAGEYQRK 240 (257)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999998877766444333
No 45
>cd07132 ALDH_F3AB Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins. NAD(P)+-dependent, aldehyde dehydrogenase, family 3 members A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and similar sequences are included in this CD. Human ALDH3A1 is a homodimer with a critical role in cellular defense against oxidative stress; it catalyzes the oxidation of various cellular membrane lipid-derived aldehydes. Corneal crystalline ALDH3A1 protects the cornea and underlying lens against UV-induced oxidative stress. Human ALDH3A2, a microsomal homodimer, catalyzes the oxidation of long-chain aliphatic aldehydes to fatty acids. Human ALDH3B1 is highly expressed in the kidney and liver and catalyzes the oxidation of various medium- and long-chain saturated and unsaturated aliphatic aldehydes.
Probab=30.35 E-value=1.3e+02 Score=25.28 Aligned_cols=40 Identities=5% Similarity=-0.193 Sum_probs=32.9
Q ss_pred HHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 032935 86 AVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (130)
Q Consensus 86 ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~ 125 (130)
+.++.....|+.++..+|..+........+.+..++..-.
T Consensus 5 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~ 44 (443)
T cd07132 5 RRAREAFSSGKTRPLEFRIQQLEALLRMLEENEDEIVEAL 44 (443)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5566677889999999999999988888888888776543
No 46
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=29.59 E-value=3.5 Score=36.81 Aligned_cols=44 Identities=25% Similarity=0.425 Sum_probs=39.3
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhh
Q 032935 59 PPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEK 103 (130)
Q Consensus 59 P~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK 103 (130)
-+++|++|+.+.+..+-..+|++ .+++++.+.|..|..|+..-+
T Consensus 552 ~~~~~~~~s~~~~~~~~~~np~v-~~~~~~~~vg~~~~~lp~~~k 595 (629)
T KOG1827|consen 552 SPEPYILDSIENRTIIWFENPTV-GFGEVSIIVGNDWDKLPNINK 595 (629)
T ss_pred CCccccccccccCceeeeeCCCc-ccceeEEeecCCcccCccccc
Confidence 56889999999999999999999 689999999999999994443
No 47
>cd07087 ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins. ALDH subfamily which includes NAD(P)+-dependent, aldehyde dehydrogenase, family 3 member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14 (YMR110C) and the protozoan family 13 member (ALDH13), as well as coniferyl aldehyde dehydrogenases (CALDH, EC=1.2.1.68), and other similar sequences, such as the Pseudomonas putida benzaldehyde dehydrogenase I that is involved in the metabolism of mandelate.
Probab=29.55 E-value=1.6e+02 Score=24.64 Aligned_cols=39 Identities=10% Similarity=-0.164 Sum_probs=32.2
Q ss_pred HHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 032935 86 AVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (130)
Q Consensus 86 ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y 124 (130)
+.++.....|+.++..+|..+...+....+++..++...
T Consensus 5 ~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~~ 43 (426)
T cd07087 5 ARLRETFLTGKTRSLEWRKAQLKALKRMLTENEEEIAAA 43 (426)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 455666778999999999999998888888888777654
No 48
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=29.19 E-value=40 Score=22.25 Aligned_cols=15 Identities=20% Similarity=0.623 Sum_probs=13.1
Q ss_pred hcCCChhhhHHHHHH
Q 032935 95 WKSLTDAEKAPFEAK 109 (130)
Q Consensus 95 Wk~ls~~eK~~Y~~~ 109 (130)
|+.||++||+.|...
T Consensus 26 yntms~eEk~~~D~~ 40 (97)
T PF12650_consen 26 YNTMSKEEKEKYDKK 40 (97)
T ss_pred cccCCHHHHHHhhHH
Confidence 899999999999753
No 49
>cd07122 ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH and may be critical enzymes in the fermentative pathway.
Probab=28.87 E-value=1.4e+02 Score=25.28 Aligned_cols=40 Identities=5% Similarity=0.077 Sum_probs=33.0
Q ss_pred HHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 032935 86 AVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (130)
Q Consensus 86 ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~ 125 (130)
+.++.....|+.+|.++|..+...+.+..+++..++....
T Consensus 6 ~~A~~A~~~W~~~~~~eR~~~L~~~a~~l~~~~eela~~~ 45 (436)
T cd07122 6 ERARKAQREFATFSQEQVDKIVEAVAWAAADAAEELAKMA 45 (436)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667789999999999999998888888888876653
No 50
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=28.76 E-value=1.8e+02 Score=19.41 Aligned_cols=60 Identities=20% Similarity=0.225 Sum_probs=30.9
Q ss_pred ChHHHHHHHHHHHHHHhC----CCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHH
Q 032935 61 SAFFVFLEEFRKVYKQEH----PNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMT 122 (130)
Q Consensus 61 say~lF~~e~r~~~k~~~----P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~ 122 (130)
+.-.-|+++++....... |+++ ..|...+...|..+-..-...........+..+.....
T Consensus 35 ~ti~~~l~~w~~~~~~~~~~~~~~lP--~~l~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~ 98 (120)
T PF11740_consen 35 STISKHLKEWREEREAQVSEAAPDLP--EALQDALAELMARLWEAAQEEAEEELEAARAELEQERA 98 (120)
T ss_pred HHHHHHHHHHHHhhhccccccccCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445666666554433 6664 45655555555555545455555555555555544443
No 51
>PRK10236 hypothetical protein; Provisional
Probab=28.75 E-value=57 Score=25.85 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=21.1
Q ss_pred HHHHHHHhhcCCChhhhHHHHHHHH
Q 032935 87 VGKAGGEKWKSLTDAEKAPFEAKAA 111 (130)
Q Consensus 87 i~k~i~~~Wk~ls~~eK~~Y~~~a~ 111 (130)
+.+++...|..||++|++.+.+.-.
T Consensus 118 l~kll~~a~~kms~eE~~~L~~~l~ 142 (237)
T PRK10236 118 LEQFLRNTWKKMDEEHKQEFLHAVD 142 (237)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 5889999999999999988876443
No 52
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=27.52 E-value=1.3e+02 Score=24.64 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=29.5
Q ss_pred HHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 032935 88 GKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (130)
Q Consensus 88 ~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~ 126 (130)
.-+-...|..||++.+....+.+.+..........+++.
T Consensus 240 ~~~s~~~w~~L~~e~q~il~~aa~e~~~~~~~~~~~~e~ 278 (332)
T COG1638 240 VLVSKAFWDSLPEEDQTILLEAAKEAAEEQRKLVEELED 278 (332)
T ss_pred eEEcHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334557899999999999999888877666665555543
No 53
>cd07136 ALDH_YwdH-P39616 Bacillus subtilis aldehyde dehydrogenase ywdH-like. Uncharacterized Bacillus subtilis ywdH aldehyde dehydrogenase (locus P39616) most closely related to the ALDHs and fatty ALDHs of families 3 and 14, and similar sequences, are included in this CD.
Probab=26.39 E-value=1.9e+02 Score=24.63 Aligned_cols=40 Identities=10% Similarity=-0.136 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 032935 85 SAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (130)
Q Consensus 85 ~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y 124 (130)
.+.++.....|..++..+|..+...+....+.+..++...
T Consensus 4 v~~a~~a~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 43 (449)
T cd07136 4 VEKQRAFFKTGATKDVEFRIEQLKKLKQAIKKYENEILEA 43 (449)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4667777788999999999999999988888888887754
No 54
>PF05388 Carbpep_Y_N: Carboxypeptidase Y pro-peptide; InterPro: IPR008442 This signature is found at the N terminus of carboxypeptidase Y, which belong to MEROPS peptidase family S10. This region contains the signal peptide and pro-peptide regions [,].; GO: 0004185 serine-type carboxypeptidase activity, 0005773 vacuole
Probab=25.17 E-value=1.1e+02 Score=21.35 Aligned_cols=29 Identities=28% Similarity=0.243 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhcCCChhhhHHHHHHHHH
Q 032935 84 VSAVGKAGGEKWKSLTDAEKAPFEAKAAK 112 (130)
Q Consensus 84 ~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~ 112 (130)
+.-+++.+++.+..|+.+-|..|.++...
T Consensus 45 ~~~~~~~l~e~l~~Lt~e~k~~W~E~~~~ 73 (113)
T PF05388_consen 45 LEKISKYLNEPLKSLTSEAKALWDEMMLL 73 (113)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 45677889999999999999999998764
No 55
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=24.84 E-value=2.6e+02 Score=21.81 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=29.7
Q ss_pred CCCCccHHHHHHHHHHhhcCCChhhh--------HHHHHHHHHHHHHHHHHHHHH
Q 032935 78 HPNVKAVSAVGKAGGEKWKSLTDAEK--------APFEAKAAKRKLDYEKLMTAY 124 (130)
Q Consensus 78 ~P~~~~~~ei~k~i~~~Wk~ls~~eK--------~~Y~~~a~~~k~~y~~e~~~Y 124 (130)
+|.+....++...++..|..+...-- ..+...+.....-...|..-|
T Consensus 259 ~~~~~~~~~~~~~i~~~W~~~~~~~~k~~~~~~~~~~~~i~~~l~~i~~~E~~~~ 313 (317)
T PF14399_consen 259 NPELAEAAELFEEIAQLWRQLANLLVKASLSKSPDDLEEIADILEKIAELEEELY 313 (317)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554567889999999987764433 355556655555555554444
No 56
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=24.19 E-value=2e+02 Score=24.36 Aligned_cols=38 Identities=13% Similarity=0.056 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 032935 86 AVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTA 123 (130)
Q Consensus 86 ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~ 123 (130)
+.++.....|+.++.++|..+...+......+..++..
T Consensus 45 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~el~~ 82 (478)
T cd07085 45 AAAKAAFPAWSATPVLKRQQVMFKFRQLLEENLDELAR 82 (478)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667899999999999999888888888777654
No 57
>cd07077 ALDH-like NAD(P)+-dependent aldehyde dehydrogenase-like (ALDH-like) family. The aldehyde dehydrogenase-like (ALDH-like) group of the ALDH superfamily of NAD(P)+-dependent enzymes which, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. This group includes families ALDH18, ALDH19, and ALDH20 and represents such proteins as gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA reductase, and coenzyme A acylating aldehyde dehydrogenase. All of these proteins have a conserved cysteine that aligns with the catalytic cysteine of the ALDH group.
Probab=23.76 E-value=1.5e+02 Score=24.41 Aligned_cols=36 Identities=11% Similarity=0.084 Sum_probs=28.4
Q ss_pred HHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 032935 88 GKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTA 123 (130)
Q Consensus 88 ~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~ 123 (130)
++.....|..++..+|..+........+++..++..
T Consensus 3 A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~ 38 (397)
T cd07077 3 AKNAQRTLAVNHDEQRDLIINAIANALYDTRQRLAS 38 (397)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567899999999999998888877788777654
No 58
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.65 E-value=90 Score=26.91 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=26.9
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 032935 98 LTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQVD 130 (130)
Q Consensus 98 ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~k~~~ 130 (130)
+.+.+++.|.+..+.....|++...+|.+.+++
T Consensus 269 ~qe~ek~kyqeEfe~~q~elek~k~efkk~hpd 301 (497)
T KOG3838|consen 269 MQELEKAKYQEEFEWAQLELEKRKDEFKKSHPD 301 (497)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhHhhhccCCch
Confidence 445688899998888888899888888887764
No 59
>PRK00197 proA gamma-glutamyl phosphate reductase; Provisional
Probab=23.48 E-value=1.9e+02 Score=24.12 Aligned_cols=40 Identities=23% Similarity=0.077 Sum_probs=33.0
Q ss_pred HHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 032935 86 AVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (130)
Q Consensus 86 ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~ 125 (130)
+.++.....|..+|..+|..+........+.+..++....
T Consensus 11 ~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~ 50 (417)
T PRK00197 11 RRAKAASRKLAQLSTAQKNRALLAIADALEANAAEILAAN 50 (417)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4566667789999999999999988888888888877643
No 60
>PRK13252 betaine aldehyde dehydrogenase; Provisional
Probab=23.06 E-value=2.3e+02 Score=24.07 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 032935 86 AVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (130)
Q Consensus 86 ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y 124 (130)
+.++.....|..++..+|..+...+......+..++..-
T Consensus 51 ~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 89 (488)
T PRK13252 51 ASAKQGQKIWAAMTAMERSRILRRAVDILRERNDELAAL 89 (488)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 445666778999999999999988888888887777653
No 61
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=23.04 E-value=2.5e+02 Score=23.25 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhC-------CCC-----ccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHH
Q 032935 66 FLEEFRKVYKQEH-------PNV-----KAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRK 114 (130)
Q Consensus 66 F~~e~r~~~k~~~-------P~~-----~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k 114 (130)
|+...|.++..=. |++ -+...+.+.+.+.|..|+++.++.|-+.+..+.
T Consensus 188 f~D~lR~EL~~fGV~VsiiePG~f~T~l~~~~~~~~~~~~~w~~l~~e~k~~YGedy~~~~ 248 (322)
T KOG1610|consen 188 FSDSLRRELRPFGVKVSIIEPGFFKTNLANPEKLEKRMKEIWERLPQETKDEYGEDYFEDY 248 (322)
T ss_pred HHHHHHHHHHhcCcEEEEeccCccccccCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 7777777765211 322 123678899999999999999999987766553
No 62
>cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like. Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde.
Probab=22.90 E-value=2.1e+02 Score=23.87 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=30.6
Q ss_pred HHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 032935 86 AVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTA 123 (130)
Q Consensus 86 ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~ 123 (130)
+.++.....|+.++..+|..+...+......+..++..
T Consensus 28 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 65 (451)
T cd07150 28 AAAYDAFPAWAATTPSERERILLKAAEIMERRADDLID 65 (451)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44566667899999999999998888888888777654
No 63
>PRK13968 putative succinate semialdehyde dehydrogenase; Provisional
Probab=22.88 E-value=2.1e+02 Score=24.19 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=32.1
Q ss_pred HHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 032935 86 AVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (130)
Q Consensus 86 ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y 124 (130)
+.++.....|..++.++|..+..........+..++...
T Consensus 36 ~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 74 (462)
T PRK13968 36 QLAAAGFRDWRETNIDYRAQKLRDIGKALRARSEEMAQM 74 (462)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445666778999999999999998888888888887754
No 64
>PRK10455 periplasmic protein; Reviewed
Probab=22.71 E-value=1.7e+02 Score=21.46 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=21.8
Q ss_pred HHHHHHHHhhcCCChhhhHHHHHHHHHH
Q 032935 86 AVGKAGGEKWKSLTDAEKAPFEAKAAKR 113 (130)
Q Consensus 86 ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~ 113 (130)
+..+....++..|++++|..|.+..+..
T Consensus 118 ~~~~~~~qiy~vLTPEQr~q~~~~~ekr 145 (161)
T PRK10455 118 AHMETQNKIYNVLTPEQKKQFNANFEKR 145 (161)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4455666789999999999999866544
No 65
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein DctP [, ] and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins []. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component [].; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 2HZK_C 2HZL_B 2HPG_C 2XWI_A 2XWK_A 2WX9_A 2CEY_A 2WYP_A 3B50_A 2CEX_B ....
Probab=22.54 E-value=1.5e+02 Score=22.99 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=21.7
Q ss_pred HHhhcCCChhhhHHHHHHHHHHHHHHHHHHH
Q 032935 92 GEKWKSLTDAEKAPFEAKAAKRKLDYEKLMT 122 (130)
Q Consensus 92 ~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~ 122 (130)
...|..||++.|....+.+.+.-..+...+.
T Consensus 213 ~~~w~~L~~e~q~~l~~~~~~~~~~~~~~~~ 243 (286)
T PF03480_consen 213 KDWWDSLPDEDQEALDDAADEAEARAREYYE 243 (286)
T ss_dssp HHHHHHS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999999877776555444433
No 66
>cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like. NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids.
Probab=22.27 E-value=2.3e+02 Score=23.65 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=31.3
Q ss_pred HHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 032935 86 AVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (130)
Q Consensus 86 ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y 124 (130)
+.++.....|+.++..+|..+...+......+..++...
T Consensus 20 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 58 (443)
T cd07152 20 ARAAAAQRAWAATPPRERAAVLRRAADLLEEHADEIADW 58 (443)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 445666778999999999999988888877877777643
No 67
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=22.06 E-value=3.4e+02 Score=23.12 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=36.0
Q ss_pred CChHHHHHHHH---HHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 032935 60 PSAFFVFLEEF---RKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 127 (130)
Q Consensus 60 ~say~lF~~e~---r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~k 127 (130)
-+||+||..=. ...+ ..|||-. .+-...-...+.|-++.-..-.+...++..+|..++.+|...
T Consensus 52 enafvLy~ry~tLfiEki-pkHrDy~---s~k~ek~d~~~klk~~~~p~~deL~~~ll~rY~~eyn~y~~~ 118 (424)
T KOG2880|consen 52 ENAFVLYLRYITLFIEKI-PKHRDYR---SVKPEKEDIRKKLKEEAFPRIDELKAKLLKRYNVEYNEYDHS 118 (424)
T ss_pred chhhhHHHHHHHHHHHhc-ccCcchh---hhchhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 36777764322 2222 3566652 222223333333445555556677778888999988888764
No 68
>cd07137 ALDH_F3FHI Plant aldehyde dehydrogenase family 3 members F1, H1, and I1 and related proteins. Aldehyde dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1, ALDH3H1, and ALDH3I1), and similar plant sequences, are in this CD. In Arabidopsis thaliana, stress-regulated expression of ALDH3I1 was observed in leaves and osmotic stress expression of ALDH3H1 was observed in root tissue, whereas, ALDH3F1 expression was not stress responsive. Functional analysis of ALDH3I1 suggest it may be involved in a detoxification pathway in plants that limits aldehyde accumulation and oxidative stress.
Probab=21.99 E-value=2.4e+02 Score=23.70 Aligned_cols=40 Identities=5% Similarity=-0.213 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 032935 85 SAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (130)
Q Consensus 85 ~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y 124 (130)
.+.++.....|+.++..+|..+...+......+..++..-
T Consensus 5 ~~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~ 44 (432)
T cd07137 5 VRELRETFRSGRTRSAEWRKSQLKGLLRLVDENEDDIFAA 44 (432)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788999999999999998888888888877654
No 69
>cd07084 ALDH_KGSADH-like ALDH subfamily: NAD(P)+-dependent alpha-ketoglutaric semialdehyde dehydrogenases and plant delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12-like. ALDH subfamily which includes the NAD(P)+-dependent, alpha-ketoglutaric semialdehyde dehydrogenases (KGSADH, EC 1.2.1.26); plant delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of the MaoC (monoamine oxidase C) dehydratase regulatory protein; and orthologs of MaoC, PaaZ and PaaN, which are putative ring-opening enzymes of the aerobic phenylacetic acid catabolic pathway.
Probab=21.80 E-value=2.1e+02 Score=24.11 Aligned_cols=40 Identities=15% Similarity=0.055 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 032935 85 SAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (130)
Q Consensus 85 ~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y 124 (130)
.+.++.....|+.++..+|..+...+.+..+.+..++...
T Consensus 5 v~~A~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 44 (442)
T cd07084 5 LLAADISTKAARRLALPKRADFLARIIQRLAAKSYDIAAG 44 (442)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4566777788999999999999988888888888777653
No 70
>cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like. Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation.
Probab=21.32 E-value=2.6e+02 Score=23.47 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 032935 86 AVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (130)
Q Consensus 86 ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y 124 (130)
+.++.....|..++.++|..+...+.....++..++...
T Consensus 25 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 63 (465)
T cd07098 25 AAARAAQREWAKTSFAERRKVLRSLLKYILENQEEICRV 63 (465)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 445556678999999999999988888888887776643
No 71
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional
Probab=21.26 E-value=2.3e+02 Score=24.21 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 032935 87 VGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTA 123 (130)
Q Consensus 87 i~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~ 123 (130)
-++.....|+.++..+|..+...+....+.+..++..
T Consensus 56 ~A~~a~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~ 92 (482)
T PRK11241 56 AANRALPAWRALTAKERANILRRWFNLMMEHQDDLAR 92 (482)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3455566899999999999998888888888877764
No 72
>cd07129 ALDH_KGSADH Alpha-Ketoglutaric Semialdehyde Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA) Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. This CD contains such sequences as those seen in Azospirillum brasilense, KGSADH-II (D-glucarate/D-galactarate-inducible) and KGSADH-III (hydroxy-L-proline-inducible). Both show similar high substrate specificity for KGSA and different coenzyme specificity; KGSADH-II is NAD+-dependent and KGSADH-III is NADP+-dependent. Also included in this CD is the NADP(+)-dependent aldehyde dehydrogenase from Vibrio harveyi which catalyzes the oxidation of long-chain aliphatic aldehydes to acids.
Probab=21.05 E-value=2.3e+02 Score=23.86 Aligned_cols=38 Identities=24% Similarity=0.248 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 032935 86 AVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTA 123 (130)
Q Consensus 86 ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~ 123 (130)
+.++.....|+.++..+|..+...+......+..++..
T Consensus 6 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 43 (454)
T cd07129 6 AAAAAAFESYRALSPARRAAFLEAIADEIEALGDELVA 43 (454)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45566677899999999999998888888787777654
No 73
>TIGR01780 SSADH succinate-semialdehyde dehydrogenase. SSADH enzyme belongs to the aldehyde dehydrogenase family (pfam00171), sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase. Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family (PS00687, PS00070).
Probab=20.88 E-value=2.8e+02 Score=23.26 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 032935 85 SAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTA 123 (130)
Q Consensus 85 ~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~ 123 (130)
.+.++.....|..++.++|..+...+......+..++..
T Consensus 25 v~~A~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~ 63 (448)
T TIGR01780 25 IRAAYEAFKTWKNTTAKERSSLLRKWYNLMMENKDDLAR 63 (448)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345666678899999999999998888887887777754
No 74
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=20.75 E-value=49 Score=21.30 Aligned_cols=22 Identities=14% Similarity=0.481 Sum_probs=16.7
Q ss_pred CCCccHHHHHHHHHHhhcCCChh
Q 032935 79 PNVKAVSAVGKAGGEKWKSLTDA 101 (130)
Q Consensus 79 P~~~~~~ei~k~i~~~Wk~ls~~ 101 (130)
|++ .+..|+..||..|..|...
T Consensus 3 ~~~-~l~~ia~~lG~dW~~LAr~ 24 (84)
T cd08317 3 ADI-RLADISNLLGSDWPQLARE 24 (84)
T ss_pred ccc-hHHHHHHHHhhHHHHHHHH
Confidence 445 5788999999999877543
No 75
>cd07099 ALDH_DDALDH Methylomonas sp. 4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid.
Probab=20.44 E-value=2.7e+02 Score=23.27 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=30.2
Q ss_pred HHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 032935 86 AVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTA 123 (130)
Q Consensus 86 ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~ 123 (130)
+.++.....|+.++..+|..+...+......+..++..
T Consensus 25 ~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~ 62 (453)
T cd07099 25 ARARAAQRAWAALGVEGRAQRLLRWKRALADHADELAE 62 (453)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667899999999999998888887777776654
No 76
>cd07108 ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent aldehyde dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde dehydrogenase of Magnetospirillum gryphiswaldense MSR-1 (MGR_2402) , and other similar sequences, are present in this CD.
Probab=20.22 E-value=2.6e+02 Score=23.41 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 032935 86 AVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (130)
Q Consensus 86 ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y 124 (130)
+-++.....|..++.++|..+..........+..++...
T Consensus 26 ~~a~~a~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 64 (457)
T cd07108 26 AAAKAAFPEWAATPARERGKLLARIADALEARSEELARL 64 (457)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 445666788999999999999988888888888777654
No 77
>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.
Probab=20.13 E-value=2.5e+02 Score=23.14 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=30.1
Q ss_pred HHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 032935 86 AVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTA 123 (130)
Q Consensus 86 ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~ 123 (130)
+.++.....|+.++..+|..+..........+..++..
T Consensus 7 ~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~ 44 (431)
T cd07104 7 AAAAAAQKAWAATPPQERAAILRKAAEILEERRDEIAD 44 (431)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45666678899999999999988888777777766654
Done!