Query 032935
Match_columns 130
No_of_seqs 145 out of 1146
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 12:29:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032935.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032935hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eqz_A High mobility group pro 99.9 4.2E-26 1.4E-30 151.4 11.3 81 45-125 5-86 (86)
2 2co9_A Thymus high mobility gr 99.9 3.9E-26 1.4E-30 156.2 11.4 85 44-129 6-90 (102)
3 1k99_A Upstream binding factor 99.9 3.1E-26 1.1E-30 156.1 9.1 83 47-130 2-84 (99)
4 1hme_A High mobility group pro 99.9 1.5E-25 5.1E-30 145.5 8.1 77 50-127 1-77 (77)
5 2lhj_A High mobility group pro 99.9 4.3E-26 1.5E-30 154.5 4.6 85 43-128 10-96 (97)
6 1cg7_A Protein (NON histone pr 99.9 5.8E-26 2E-30 152.9 4.5 83 45-128 10-92 (93)
7 2crj_A SWI/SNF-related matrix- 99.9 7.4E-25 2.5E-29 147.1 9.9 77 50-127 2-78 (92)
8 1aab_A High mobility group pro 99.9 1.9E-25 6.6E-30 147.1 5.6 79 50-128 2-81 (83)
9 1wgf_A Upstream binding factor 99.9 1.1E-25 3.6E-30 150.8 3.9 80 43-123 8-87 (90)
10 2cs1_A PMS1 protein homolog 1; 99.9 1.6E-24 5.5E-29 145.4 9.5 79 50-129 2-80 (92)
11 2e6o_A HMG box-containing prot 99.9 1E-24 3.5E-29 145.1 7.8 77 48-125 10-86 (87)
12 1hry_A Human SRY; DNA, DNA-bin 99.9 1.7E-24 5.8E-29 140.1 6.9 73 52-125 1-73 (76)
13 3nm9_A HMG-D, high mobility gr 99.9 6.3E-24 2.2E-28 136.8 9.4 72 53-127 1-72 (73)
14 1ckt_A High mobility group 1 p 99.9 1.1E-23 3.6E-28 134.6 8.5 70 55-124 1-71 (71)
15 1wxl_A Single-strand recogniti 99.9 8.6E-24 2.9E-28 136.2 7.6 72 53-127 1-72 (73)
16 1j46_A SRY, sex-determining re 99.9 1.4E-23 4.9E-28 138.8 8.4 74 52-126 1-74 (85)
17 2gzk_A Sex-determining region 99.9 4.4E-23 1.5E-27 150.0 10.8 80 47-127 80-159 (159)
18 1wz6_A HMG-box transcription f 99.9 8.4E-24 2.9E-28 138.9 5.1 77 50-127 2-78 (82)
19 4a3n_A Transcription factor SO 99.9 1.7E-23 5.8E-28 133.4 6.1 71 54-125 1-71 (71)
20 3f27_D Transcription factor SO 99.9 3.3E-23 1.1E-27 136.0 7.2 73 52-125 3-75 (83)
21 1gt0_D Transcription factor SO 99.9 4.8E-23 1.6E-27 134.5 7.8 72 54-126 1-72 (80)
22 4euw_A Transcription factor SO 99.9 4.8E-23 1.7E-27 141.8 8.2 78 48-126 22-99 (106)
23 2lef_A LEF-1 HMG, protein (lym 99.9 8.2E-23 2.8E-27 135.3 8.1 72 54-126 1-72 (86)
24 1v64_A Nucleolar transcription 99.9 1.4E-22 4.8E-27 140.1 9.4 78 46-128 7-85 (108)
25 3u2b_C Transcription factor SO 99.9 6.9E-23 2.4E-27 133.3 7.0 71 54-125 1-71 (79)
26 2yrq_A High mobility group pro 99.9 2.6E-22 8.9E-27 148.0 10.7 80 47-127 93-172 (173)
27 1l8y_A Upstream binding factor 99.9 1.6E-22 5.3E-27 136.3 8.5 74 53-128 2-75 (91)
28 1i11_A Transcription factor SO 99.9 1.1E-22 3.7E-27 133.3 6.3 72 53-125 2-73 (81)
29 2yrq_A High mobility group pro 99.9 6.1E-22 2.1E-26 146.0 9.8 83 45-127 5-88 (173)
30 3fgh_A Transcription factor A, 99.9 4E-22 1.4E-26 126.3 7.3 66 54-124 1-66 (67)
31 1v63_A Nucleolar transcription 99.9 4.3E-21 1.5E-25 131.1 10.2 76 51-129 4-79 (101)
32 2d7l_A WD repeat and HMG-box D 99.8 2.9E-21 1E-25 127.4 6.5 64 51-114 1-64 (81)
33 3tmm_A Transcription factor A, 99.8 1.7E-20 5.9E-25 145.1 8.0 80 48-128 34-113 (238)
34 3tq6_A Transcription factor A, 99.8 4.1E-20 1.4E-24 141.0 9.0 76 52-128 6-81 (214)
35 2cto_A Novel protein; high mob 99.8 1.6E-20 5.6E-25 126.8 4.8 71 49-122 4-77 (93)
36 2yuk_A Myeloid/lymphoid or mix 99.8 2.9E-21 9.9E-26 129.9 0.0 68 48-120 15-84 (90)
37 3tq6_A Transcription factor A, 99.8 1.9E-20 6.6E-25 142.8 1.8 76 48-128 107-182 (214)
38 3tmm_A Transcription factor A, 99.8 3.2E-20 1.1E-24 143.6 1.3 76 48-128 139-214 (238)
39 2gzk_A Sex-determining region 99.7 3.5E-18 1.2E-22 124.0 7.5 73 53-126 2-74 (159)
40 2qgu_A Probable signal peptide 77.0 2.8 9.5E-05 31.0 4.2 47 79-126 70-118 (211)
41 1j1d_B Troponin T, TNT; THIN f 25.5 1.3E+02 0.0043 19.9 4.6 50 66-118 29-78 (106)
42 3o39_A Periplasmic protein rel 24.0 1.1E+02 0.0036 20.2 4.1 27 86-112 79-105 (108)
43 2wme_A BADH, betaine aldehyde 22.1 1.1E+02 0.0036 25.1 4.6 39 86-124 51-89 (490)
44 3u65_B TP33 protein; tetratric 20.9 1.4E+02 0.0046 22.9 4.8 22 93-114 235-256 (328)
45 1o20_A Gamma-glutamyl phosphat 20.9 1.5E+02 0.0052 23.6 5.2 39 86-124 21-59 (427)
46 3itf_A Periplasmic adaptor pro 20.7 1.5E+02 0.005 20.5 4.4 32 86-117 107-138 (145)
No 1
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=4.2e-26 Score=151.36 Aligned_cols=81 Identities=32% Similarity=0.570 Sum_probs=76.2
Q ss_pred ccccCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 032935 45 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTA 123 (130)
Q Consensus 45 k~~k~~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~-~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~ 123 (130)
++++..+||++|+||+||||||++++|..|+.+||+++ +|.+|+++||++|++||+++|.+|+++|..++++|..+|.+
T Consensus 5 ~~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (86)
T 2eqz_A 5 SSGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKD 84 (86)
T ss_dssp CSSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999996 47999999999999999999999999999999999999999
Q ss_pred Hh
Q 032935 124 YN 125 (130)
Q Consensus 124 Y~ 125 (130)
|+
T Consensus 85 Y~ 86 (86)
T 2eqz_A 85 YG 86 (86)
T ss_dssp HC
T ss_pred cC
Confidence 94
No 2
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.94 E-value=3.9e-26 Score=156.16 Aligned_cols=85 Identities=31% Similarity=0.552 Sum_probs=79.3
Q ss_pred cccccCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 032935 44 KNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTA 123 (130)
Q Consensus 44 ~k~~k~~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~ 123 (130)
.+++++.+||++|+||+||||||++++|..|+.+||++ ++.+|+++||++|++|++++|.+|.++|..++++|..+|.+
T Consensus 6 ~~~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~ 84 (102)
T 2co9_A 6 SGKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNA-TFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAA 84 (102)
T ss_dssp CCSCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTS-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456778999999999999999999999999999999 68999999999999999999999999999999999999999
Q ss_pred HhhhcC
Q 032935 124 YNKKQV 129 (130)
Q Consensus 124 Y~~k~~ 129 (130)
|+....
T Consensus 85 Y~~~~~ 90 (102)
T 2co9_A 85 YRASLV 90 (102)
T ss_dssp HHHHHT
T ss_pred HHhhcc
Confidence 998654
No 3
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.93 E-value=3.1e-26 Score=156.08 Aligned_cols=83 Identities=27% Similarity=0.504 Sum_probs=78.8
Q ss_pred ccCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 032935 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (130)
Q Consensus 47 ~k~~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~ 126 (130)
+++.+||++|+||+|||||||+++|..|+.+||++ ++.+|+++||++|++||+++|.+|.+.|..++++|..+|.+|..
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~ 80 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEM-SNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRE 80 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTS-CSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999 67999999999999999999999999999999999999999998
Q ss_pred hcCC
Q 032935 127 KQVD 130 (130)
Q Consensus 127 k~~~ 130 (130)
.+++
T Consensus 81 ~~P~ 84 (99)
T 1k99_A 81 DHPD 84 (99)
T ss_dssp CCCC
T ss_pred HCCC
Confidence 8764
No 4
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.92 E-value=1.5e-25 Score=145.46 Aligned_cols=77 Identities=51% Similarity=0.835 Sum_probs=73.8
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 032935 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 127 (130)
Q Consensus 50 ~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~k 127 (130)
.+||++|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|.+|.+.|..++++|..+|.+|+.+
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~k 77 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 77 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999999999999 689999999999999999999999999999999999999999753
No 5
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.92 E-value=4.3e-26 Score=154.52 Aligned_cols=85 Identities=36% Similarity=0.681 Sum_probs=79.3
Q ss_pred ccccccCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCcc--HHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHH
Q 032935 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA--VSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKL 120 (130)
Q Consensus 43 ~~k~~k~~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~~--~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e 120 (130)
++++++..+||++|+||+||||||++++|..|+.+||++ + +.+|+++||++|++||+++|.+|++.|..++++|..+
T Consensus 10 k~~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~-~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e 88 (97)
T 2lhj_A 10 VRRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEI-AKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYERE 88 (97)
T ss_dssp CCCTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTS-TTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344567789999999999999999999999999999999 5 7999999999999999999999999999999999999
Q ss_pred HHHHhhhc
Q 032935 121 MTAYNKKQ 128 (130)
Q Consensus 121 ~~~Y~~k~ 128 (130)
|.+|+.++
T Consensus 89 ~~~y~~~~ 96 (97)
T 2lhj_A 89 KAEYAQRK 96 (97)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999764
No 6
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.92 E-value=5.8e-26 Score=152.91 Aligned_cols=83 Identities=45% Similarity=0.704 Sum_probs=78.6
Q ss_pred ccccCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 032935 45 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (130)
Q Consensus 45 k~~k~~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y 124 (130)
++++..+||+.|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|.+|.+.|..++++|..+|.+|
T Consensus 10 ~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y 88 (93)
T 1cg7_A 10 RTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDI-TFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELY 88 (93)
T ss_dssp CCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTS-CHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHH
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999999999 689999999999999999999999999999999999999999
Q ss_pred hhhc
Q 032935 125 NKKQ 128 (130)
Q Consensus 125 ~~k~ 128 (130)
+.++
T Consensus 89 ~~~~ 92 (93)
T 1cg7_A 89 NATL 92 (93)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 9865
No 7
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.92 E-value=7.4e-25 Score=147.10 Aligned_cols=77 Identities=30% Similarity=0.528 Sum_probs=74.4
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 032935 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 127 (130)
Q Consensus 50 ~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~k 127 (130)
.+||++|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|.+|.++|..++++|..+|.+|+..
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~ 78 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDL-PFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQS 78 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 57999999999999999999999999999999 689999999999999999999999999999999999999999875
No 8
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.91 E-value=1.9e-25 Score=147.05 Aligned_cols=79 Identities=33% Similarity=0.570 Sum_probs=74.5
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 032935 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQ 128 (130)
Q Consensus 50 ~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~-~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~k~ 128 (130)
.+||++|+||+|||||||+++|..|+.+||+++ +|.+|+++||++|++||+++|.+|.++|..++++|..+|.+|+...
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~~ 81 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPK 81 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 479999999999999999999999999999995 3689999999999999999999999999999999999999998653
No 9
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.91 E-value=1.1e-25 Score=150.79 Aligned_cols=80 Identities=30% Similarity=0.501 Sum_probs=74.0
Q ss_pred ccccccCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHH
Q 032935 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMT 122 (130)
Q Consensus 43 ~~k~~k~~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~ 122 (130)
+++++++.+||++|+||+|||||||+++|..|+.+||++ ++.+|+++||++|++|++++|.+|+++|..++++|..+|.
T Consensus 8 k~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 86 (90)
T 1wgf_A 8 KPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPEL-SESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSG 86 (90)
T ss_dssp SSCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred CCCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567789999999999999999999999999999999 6899999999999999999999999999999999988765
Q ss_pred H
Q 032935 123 A 123 (130)
Q Consensus 123 ~ 123 (130)
.
T Consensus 87 ~ 87 (90)
T 1wgf_A 87 P 87 (90)
T ss_dssp S
T ss_pred H
Confidence 3
No 10
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=1.6e-24 Score=145.44 Aligned_cols=79 Identities=25% Similarity=0.381 Sum_probs=75.3
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 032935 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQV 129 (130)
Q Consensus 50 ~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~k~~ 129 (130)
..+|++|+||+||||||++++|..|+.+||++ ++.+|+++||++|++|++++|.+|.++|..++++|..+|.+|+.++.
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~~~ 80 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKT-SLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQES 80 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCSS-CHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTSTTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 36899999999999999999999999999999 68999999999999999999999999999999999999999998753
No 11
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.91 E-value=1e-24 Score=145.06 Aligned_cols=77 Identities=26% Similarity=0.449 Sum_probs=73.9
Q ss_pred cCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 032935 48 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (130)
Q Consensus 48 k~~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~ 125 (130)
+..+||+.|+||+||||||++++|..|+.+||++ ++.+|+++||++|++|++++|.+|+++|..++++|..++++|+
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGK-DNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 5678999999999999999999999999999999 6899999999999999999999999999999999999999885
No 12
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.91 E-value=1.7e-24 Score=140.11 Aligned_cols=73 Identities=33% Similarity=0.471 Sum_probs=69.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 032935 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (130)
Q Consensus 52 dp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~ 125 (130)
||+.|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|.+|.+.|..++++|..+|.+|+
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yk 73 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYK 73 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCC-SSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 799999999999999999999999999999 5799999999999999999999999999999999999999986
No 13
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.90 E-value=6.3e-24 Score=136.79 Aligned_cols=72 Identities=42% Similarity=0.770 Sum_probs=69.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 032935 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 127 (130)
Q Consensus 53 p~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~k 127 (130)
.++||||+|||||||+++|..|+.+||++ ++.+|+++||++|++|++ |.+|++.|..++++|..+|++|+.+
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~k 72 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGI-KVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEAN 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999 689999999999999997 9999999999999999999999875
No 14
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.90 E-value=1.1e-23 Score=134.60 Aligned_cols=70 Identities=33% Similarity=0.592 Sum_probs=67.2
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 032935 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (130)
Q Consensus 55 ~PKRP~say~lF~~e~r~~~k~~~P~~~-~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y 124 (130)
+|+||+|||+||++++|..|+.+||+++ +|.+|+++||++|++||+++|.+|.+.|..++++|..+|.+|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5999999999999999999999999996 479999999999999999999999999999999999999887
No 15
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.90 E-value=8.6e-24 Score=136.17 Aligned_cols=72 Identities=38% Similarity=0.706 Sum_probs=69.3
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 032935 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 127 (130)
Q Consensus 53 p~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~k 127 (130)
|++|+||+||||||++++|..|+.+||++ ++.+|+++||++|++| ++|.+|++.|..++++|..+|.+|+..
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGI-KVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTC-CHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 78999999999999999999999999999 6899999999999999 899999999999999999999999864
No 16
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.89 E-value=1.4e-23 Score=138.83 Aligned_cols=74 Identities=32% Similarity=0.455 Sum_probs=71.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 032935 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (130)
Q Consensus 52 dp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~ 126 (130)
.|+.|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|.+|.+.|..++++|..+|.+|.-
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~ 74 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKY 74 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCccccc
Confidence 489999999999999999999999999999 68999999999999999999999999999999999999999974
No 17
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.89 E-value=4.4e-23 Score=150.03 Aligned_cols=80 Identities=50% Similarity=0.816 Sum_probs=76.2
Q ss_pred ccCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 032935 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (130)
Q Consensus 47 ~k~~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~ 126 (130)
++..+||+.|+||+|||+|||+++|..|+.+||++ ++++|+++||++|++||+++|.+|.+.|..++++|..+|.+|+.
T Consensus 80 kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~-~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 158 (159)
T 2gzk_A 80 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 158 (159)
T ss_dssp GGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCC-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccchhhHhhHHHHHHhCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678999999999999999999999999999999 68999999999999999999999999999999999999999986
Q ss_pred h
Q 032935 127 K 127 (130)
Q Consensus 127 k 127 (130)
+
T Consensus 159 ~ 159 (159)
T 2gzk_A 159 K 159 (159)
T ss_dssp C
T ss_pred C
Confidence 3
No 18
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.89 E-value=8.4e-24 Score=138.87 Aligned_cols=77 Identities=25% Similarity=0.413 Sum_probs=72.9
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 032935 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 127 (130)
Q Consensus 50 ~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~k 127 (130)
..|++.|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|.+|.+.|..++++|..+|.+|+..
T Consensus 2 ~~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~~ 78 (82)
T 1wz6_A 2 SSGSSGARRPMNAFLLFCKRHRSLVRQEHPRL-DNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRSG 78 (82)
T ss_dssp CSSCCCSCCCCCHHHHHHHHHHHHHHHHCSSS-CTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhcC
Confidence 35899999999999999999999999999999 679999999999999999999999999999999999999998753
No 19
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.89 E-value=1.7e-23 Score=133.39 Aligned_cols=71 Identities=31% Similarity=0.514 Sum_probs=62.9
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 032935 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (130)
Q Consensus 54 ~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~ 125 (130)
+.|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|.+|.+.|..++++|..++++|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDL-HNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 5799999999999999999999999999 6899999999999999999999999999999999999999985
No 20
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.88 E-value=3.3e-23 Score=136.04 Aligned_cols=73 Identities=30% Similarity=0.494 Sum_probs=67.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 032935 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (130)
Q Consensus 52 dp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~ 125 (130)
.++.|+||+||||||++++|..|..+||++ ++.+|+++||++|++|++++|.+|.+.|..++++|..+|++|+
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yk 75 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDL-HNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 75 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCe
Confidence 578899999999999999999999999999 6899999999999999999999999999999999999999986
No 21
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.88 E-value=4.8e-23 Score=134.55 Aligned_cols=72 Identities=32% Similarity=0.490 Sum_probs=69.3
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 032935 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (130)
Q Consensus 54 ~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~ 126 (130)
+.|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|.+|.+.|..++++|..+|++|+-
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~ 72 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKM-HNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKY 72 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCccccc
Confidence 5799999999999999999999999999 68999999999999999999999999999999999999999974
No 22
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.88 E-value=4.8e-23 Score=141.80 Aligned_cols=78 Identities=26% Similarity=0.474 Sum_probs=69.9
Q ss_pred cCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 032935 48 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (130)
Q Consensus 48 k~~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~ 126 (130)
...+|++.|+||+||||||++++|..|+.+||++ ++.+|+++||++|+.||+++|.+|.++|..++++|..+|++|+-
T Consensus 22 ~~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yky 99 (106)
T 4euw_A 22 QSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHL-HNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKY 99 (106)
T ss_dssp ------CCCCCCCCHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred hccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 4578899999999999999999999999999999 68999999999999999999999999999999999999999963
No 23
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.88 E-value=8.2e-23 Score=135.31 Aligned_cols=72 Identities=22% Similarity=0.381 Sum_probs=69.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 032935 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (130)
Q Consensus 54 ~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~ 126 (130)
+.|+||+||||||++++|..|..+||++ ++.+|+++||++|++||+++|.+|.++|..++++|..+|++|.-
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~ 72 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLK-ESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSA 72 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCC-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcccccC
Confidence 4799999999999999999999999999 68999999999999999999999999999999999999999973
No 24
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.88 E-value=1.4e-22 Score=140.09 Aligned_cols=78 Identities=23% Similarity=0.395 Sum_probs=72.6
Q ss_pred cccCCCCCCCC-CCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 032935 46 VKSAKKDPNKP-KRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (130)
Q Consensus 46 ~~k~~kdp~~P-KRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y 124 (130)
+.++.+||+.| |||+|||+|||+++|..|+ ++ ++.+|+++||++|++|++++|.+|+++|..++++|..+|.+|
T Consensus 7 ~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~-~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y 81 (108)
T 1v64_A 7 GQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DV-PSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRF 81 (108)
T ss_dssp CCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677899999 9999999999999999986 67 689999999999999999999999999999999999999999
Q ss_pred hhhc
Q 032935 125 NKKQ 128 (130)
Q Consensus 125 ~~k~ 128 (130)
....
T Consensus 82 ~~~~ 85 (108)
T 1v64_A 82 LESL 85 (108)
T ss_dssp HHHS
T ss_pred HhhC
Confidence 9865
No 25
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.88 E-value=6.9e-23 Score=133.27 Aligned_cols=71 Identities=28% Similarity=0.493 Sum_probs=68.7
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 032935 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (130)
Q Consensus 54 ~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~ 125 (130)
|.|+||+||||||++++|..|..+||++ ++.+|+++||++|++||+++|.+|.++|..++++|..++++|+
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yk 71 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDM-HNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYK 71 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCe
Confidence 5799999999999999999999999999 6899999999999999999999999999999999999999986
No 26
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=2.6e-22 Score=147.98 Aligned_cols=80 Identities=50% Similarity=0.816 Sum_probs=76.2
Q ss_pred ccCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 032935 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (130)
Q Consensus 47 ~k~~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~ 126 (130)
+++.+||+.|+||+|||||||+++|..|+.+||++ ++.+|+++||++|++||+++|.+|.+.|..++++|..+|.+|+.
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~-~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 171 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 171 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSS-CHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567999999999999999999999999999999 68999999999999999999999999999999999999999986
Q ss_pred h
Q 032935 127 K 127 (130)
Q Consensus 127 k 127 (130)
+
T Consensus 172 k 172 (173)
T 2yrq_A 172 K 172 (173)
T ss_dssp C
T ss_pred c
Confidence 5
No 27
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.88 E-value=1.6e-22 Score=136.27 Aligned_cols=74 Identities=20% Similarity=0.241 Sum_probs=70.5
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 032935 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQ 128 (130)
Q Consensus 53 p~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~k~ 128 (130)
.+.|+||+|||+||++++|..++.+||+ ++++|++.||++|++|++++|.+|+++|..++++|+++|.+|+.+.
T Consensus 2 ~~kPKrP~SAy~lf~~~~r~~~k~~~p~--~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~ 75 (91)
T 1l8y_A 2 GKLPESPKRAEEIWQQSVIGDYLARFKN--DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPP 75 (91)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHHTTS--THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3689999999999999999999999998 5799999999999999999999999999999999999999998764
No 28
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.87 E-value=1.1e-22 Score=133.28 Aligned_cols=72 Identities=28% Similarity=0.471 Sum_probs=68.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 032935 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (130)
Q Consensus 53 p~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~ 125 (130)
++.|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|.+|.+.|..++++|..++++|.
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yk 73 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDM-HNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYK 73 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSC-CHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC-
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCe
Confidence 57899999999999999999999999999 6899999999999999999999999999999999999999886
No 29
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=6.1e-22 Score=145.98 Aligned_cols=83 Identities=31% Similarity=0.536 Sum_probs=76.8
Q ss_pred ccccCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 032935 45 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTA 123 (130)
Q Consensus 45 k~~k~~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~-~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~ 123 (130)
++++..+||++|+||+|||+|||+++|..|+.+||+++ ++.+|+++||++|++||+++|.+|.++|..++++|..+|.+
T Consensus 5 ~~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (173)
T 2yrq_A 5 SSGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKT 84 (173)
T ss_dssp SCSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34467789999999999999999999999999999942 68999999999999999999999999999999999999999
Q ss_pred Hhhh
Q 032935 124 YNKK 127 (130)
Q Consensus 124 Y~~k 127 (130)
|...
T Consensus 85 y~~~ 88 (173)
T 2yrq_A 85 YIPP 88 (173)
T ss_dssp CCCC
T ss_pred hhhh
Confidence 9753
No 30
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.86 E-value=4e-22 Score=126.27 Aligned_cols=66 Identities=33% Similarity=0.519 Sum_probs=62.5
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 032935 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (130)
Q Consensus 54 ~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y 124 (130)
|.|+||+|||+||++++|..++..|| .+|+++||++|++||+++|.+|.++|..++++|..+|.+|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999976654 6999999999999999999999999999999999999998
No 31
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.85 E-value=4.3e-21 Score=131.12 Aligned_cols=76 Identities=14% Similarity=0.294 Sum_probs=67.3
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 032935 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQV 129 (130)
Q Consensus 51 kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~k~~ 129 (130)
...++||||+|||||||++++. ..+++++ ++.||+++||++|++|++++|.+|+++|..++++|..+|.+|.....
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~~-~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~~ 79 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNHL-PLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLS 79 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4568999999999999999964 2344556 68999999999999999999999999999999999999999998653
No 32
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.9e-21 Score=127.36 Aligned_cols=64 Identities=22% Similarity=0.372 Sum_probs=60.0
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHH
Q 032935 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRK 114 (130)
Q Consensus 51 kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k 114 (130)
.+++.|+||+|||||||+++|..|+.+||+++++.+|+++||++|++|++++|.+|+++|..+.
T Consensus 1 ~~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d~ 64 (81)
T 2d7l_A 1 GSSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGET 64 (81)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3789999999999999999999999999999438999999999999999999999999998873
No 33
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.82 E-value=1.7e-20 Score=145.11 Aligned_cols=80 Identities=18% Similarity=0.395 Sum_probs=75.0
Q ss_pred cCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 032935 48 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 127 (130)
Q Consensus 48 k~~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~k 127 (130)
....||++|+||+|||+|||+++|..|+.+||++ ++.+|+++||++|+.|++++|.+|+++|..++++|..+|..|...
T Consensus 34 ~s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~-~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~ 112 (238)
T 3tmm_A 34 SSSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDA-KTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ 112 (238)
T ss_dssp -CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3467899999999999999999999999999999 689999999999999999999999999999999999999999754
Q ss_pred c
Q 032935 128 Q 128 (130)
Q Consensus 128 ~ 128 (130)
+
T Consensus 113 ~ 113 (238)
T 3tmm_A 113 L 113 (238)
T ss_dssp C
T ss_pred C
Confidence 3
No 34
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.81 E-value=4.1e-20 Score=141.01 Aligned_cols=76 Identities=17% Similarity=0.408 Sum_probs=72.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 032935 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQ 128 (130)
Q Consensus 52 dp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~k~ 128 (130)
+|++|+||+|||+|||+++|..|+.+||++ ++.+|+++||++|++||+++|.+|+++|..++++|..+|..|...+
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~-~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~~~ 81 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDA-KTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQL 81 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcccC
Confidence 478999999999999999999999999999 6899999999999999999999999999999999999999997543
No 35
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-20 Score=126.85 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=65.5
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHH---HHhhcCCChhhhHHHHHHHHHHHHHHHHHHH
Q 032935 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAG---GEKWKSLTDAEKAPFEAKAAKRKLDYEKLMT 122 (130)
Q Consensus 49 ~~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i---~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~ 122 (130)
...+++.|+||+||||||++++|..|+.+ ++ +|.+|+++| |++|++|++++|.+|+++|..++++|.+++.
T Consensus 4 ~~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~-~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~~ 77 (93)
T 2cto_A 4 GSSGMPNRKASRNAYYFFVQEKIPELRRR--GL-PVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPG 77 (93)
T ss_dssp CCCCCCCCCSSCCHHHHHHHTTHHHHHHH--TC-CCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHc--CC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 35688999999999999999999999988 67 578999999 9999999999999999999999999998764
No 36
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-21 Score=129.86 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=62.6
Q ss_pred cCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCcc--HHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHH
Q 032935 48 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA--VSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKL 120 (130)
Q Consensus 48 k~~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~~--~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e 120 (130)
+..+||++|+||+|||||||+++|..|+.+||++ + +++|+ ++|+.|++++|.+|+++|+.++++|...
T Consensus 15 k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~-s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 15 KWEKEEALGEMATVAPVLYTNINFPNLKEEFPDW-TTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp HHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSH-HHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCc-cchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 4567999999999999999999999999999999 6 67777 9999999999999999999999999753
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.78 E-value=1.9e-20 Score=142.81 Aligned_cols=76 Identities=29% Similarity=0.427 Sum_probs=69.6
Q ss_pred cCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 032935 48 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 127 (130)
Q Consensus 48 k~~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~k 127 (130)
+..+||+.|+||+|||+|||+++|..|+.+|| .+|+++||++|++||+++|.+|++.|..++++|..+|.+|+.+
T Consensus 107 k~~kdp~~PKrP~say~lF~~e~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~~ 181 (214)
T 3tq6_A 107 KELTLLGKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 181 (214)
T ss_dssp HHHHHTTCCCCCCCHHHHHHHHHTTTSSCSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCcccccchhhhhHHHHHHhhccCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44679999999999999999999998865543 5899999999999999999999999999999999999999986
Q ss_pred c
Q 032935 128 Q 128 (130)
Q Consensus 128 ~ 128 (130)
.
T Consensus 182 ~ 182 (214)
T 3tq6_A 182 M 182 (214)
T ss_dssp H
T ss_pred C
Confidence 4
No 38
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.77 E-value=3.2e-20 Score=143.56 Aligned_cols=76 Identities=29% Similarity=0.427 Sum_probs=69.7
Q ss_pred cCCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 032935 48 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 127 (130)
Q Consensus 48 k~~kdp~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~k 127 (130)
+..+||+.|+||+|||+|||+++|..|+.+|| .+|+++||++|++|++++|.+|++.|..++++|..+|.+|+.+
T Consensus 139 k~~kdp~~PKrP~say~lF~~e~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~k 213 (238)
T 3tmm_A 139 KELTLLGKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 213 (238)
T ss_dssp HHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSH-----HHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCCCCCcHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45679999999999999999999998875554 5899999999999999999999999999999999999999986
Q ss_pred c
Q 032935 128 Q 128 (130)
Q Consensus 128 ~ 128 (130)
.
T Consensus 214 ~ 214 (238)
T 3tmm_A 214 M 214 (238)
T ss_dssp H
T ss_pred C
Confidence 3
No 39
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.74 E-value=3.5e-18 Score=124.02 Aligned_cols=73 Identities=33% Similarity=0.475 Sum_probs=70.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 032935 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (130)
Q Consensus 53 p~~PKRP~say~lF~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y~~ 126 (130)
|+.|+||+||||||+.+.+..|..+||++ ++.+|+++||++|++||+++|.+|.++|..++++|..+|..|..
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 74 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKY 74 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSC-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCSC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhcccc
Confidence 68899999999999999999999999999 68999999999999999999999999999999999999999953
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=76.98 E-value=2.8 Score=30.95 Aligned_cols=47 Identities=11% Similarity=0.185 Sum_probs=35.6
Q ss_pred CCCccHHHHHHH-HHHhhcCCChhhhHHHHHHHHH-HHHHHHHHHHHHhh
Q 032935 79 PNVKAVSAVGKA-GGEKWKSLTDAEKAPFEAKAAK-RKLDYEKLMTAYNK 126 (130)
Q Consensus 79 P~~~~~~ei~k~-i~~~Wk~ls~~eK~~Y~~~a~~-~k~~y~~e~~~Y~~ 126 (130)
|-. +|..+++. +|..|+.+|++++..|.+.... ...-|-..+..|..
T Consensus 70 p~~-D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~ 118 (211)
T 2qgu_A 70 PRA-DFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRN 118 (211)
T ss_dssp GGB-CHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred hhc-CHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 444 45566554 5899999999999999987776 44568888888864
No 41
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=25.46 E-value=1.3e+02 Score=19.90 Aligned_cols=50 Identities=22% Similarity=0.401 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHH
Q 032935 66 FLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYE 118 (130)
Q Consensus 66 F~~e~r~~~k~~~P~~~~~~ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~ 118 (130)
|+.+.+.-+ ..+++ +..++...|.+.|.-+..-+=..|.-.+...+..|+
T Consensus 29 iLaER~kpL--~id~l-~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yE 78 (106)
T 1j1d_B 29 ILAERRKVL--AIDHL-NEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYE 78 (106)
T ss_dssp HHHHHHHHH--HHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCC--CCCCC-CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHH
Confidence 556666555 33555 557898999999998888888889888888777775
No 42
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=24.02 E-value=1.1e+02 Score=20.15 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=21.9
Q ss_pred HHHHHHHHhhcCCChhhhHHHHHHHHH
Q 032935 86 AVGKAGGEKWKSLTDAEKAPFEAKAAK 112 (130)
Q Consensus 86 ei~k~i~~~Wk~ls~~eK~~Y~~~a~~ 112 (130)
+..+.-..++.-|+|++|..|.+..+.
T Consensus 79 ~~~r~~~qmy~lLTPEQk~q~~~~~~~ 105 (108)
T 3o39_A 79 AHMETQNKIYNILTPEQKKQFNANFEK 105 (108)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 456677789999999999999986543
No 43
>2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A*
Probab=22.08 E-value=1.1e+02 Score=25.13 Aligned_cols=39 Identities=13% Similarity=0.245 Sum_probs=31.3
Q ss_pred HHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 032935 86 AVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (130)
Q Consensus 86 ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y 124 (130)
+.++.....|+.++..+|..+.....+...++..++...
T Consensus 51 ~aA~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 89 (490)
T 2wme_A 51 QSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAAL 89 (490)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345566788999999999999988888888887777654
No 44
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=20.89 E-value=1.4e+02 Score=22.87 Aligned_cols=22 Identities=9% Similarity=0.277 Sum_probs=18.3
Q ss_pred HhhcCCChhhhHHHHHHHHHHH
Q 032935 93 EKWKSLTDAEKAPFEAKAAKRK 114 (130)
Q Consensus 93 ~~Wk~ls~~eK~~Y~~~a~~~k 114 (130)
..|..||++.++...+.+.+..
T Consensus 235 ~~w~~L~~e~q~~i~~a~~e~~ 256 (328)
T 3u65_B 235 GSWARIPSRYHDAMLQAATRVR 256 (328)
T ss_dssp HHHTTSCGGGHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHH
Confidence 5699999999999998776654
No 45
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Probab=20.85 E-value=1.5e+02 Score=23.55 Aligned_cols=39 Identities=15% Similarity=0.021 Sum_probs=30.7
Q ss_pred HHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 032935 86 AVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (130)
Q Consensus 86 ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y~~e~~~Y 124 (130)
+.++.....|+.++..+|..+.....+....+..++..-
T Consensus 21 ~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~ 59 (427)
T 1o20_A 21 KKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEA 59 (427)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 445566678999999999999988888877877776553
No 46
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=20.70 E-value=1.5e+02 Score=20.50 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=24.1
Q ss_pred HHHHHHHHhhcCCChhhhHHHHHHHHHHHHHH
Q 032935 86 AVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDY 117 (130)
Q Consensus 86 ei~k~i~~~Wk~ls~~eK~~Y~~~a~~~k~~y 117 (130)
+..+.-.+++..|++++|..|.+..++...++
T Consensus 107 ~r~k~~~qiy~vLTPEQk~ql~e~~~~r~~~~ 138 (145)
T 3itf_A 107 EMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQL 138 (145)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 44566668999999999999998766654443
Done!