BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032937
         (130 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
           Promoter Binding Protein-Like 4
          Length = 94

 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 53/74 (71%), Positives = 62/74 (83%)

Query: 39  CMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETKRS 98
           C V++C  D+ +A+ YHRRHKVCE H+KA  V ++GL QRFCQQCSRFH+L EFDE KRS
Sbjct: 11  CQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRS 70

Query: 99  CRRRLAGHNERRRK 112
           CRRRLAGHNERRRK
Sbjct: 71  CRRRLAGHNERRRK 84


>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
          Promoter Binding Protein-Like 12 Lacking The Second
          Zinc- Binding Site
          Length = 60

 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 44/59 (74%)

Query: 35 SSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFD 93
          S+ CC V+ CG DL+  + YHRRHKVCE HSKA   +V G+ QRFCQQCSRFH L EFD
Sbjct: 2  SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60


>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa
           Promoter Binding Protein-like 7
          Length = 88

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 53/81 (65%)

Query: 39  CMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETKRS 98
           C V  C  D+++ + YH+RH+VC   + A  V++ G  +R+CQQC +FH L +FDE KRS
Sbjct: 6   CQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRS 65

Query: 99  CRRRLAGHNERRRKSTAETTG 119
           CRR+L  HN RR++   +  G
Sbjct: 66  CRRKLERHNNRRKRKPVDKGG 86


>pdb|2JXP|A Chain A, Solution Nmr Structure Of Uncharacterized Lipoprotein B
           From Nitrosomonas Europaea. Northeast Structural
           Genomics Target Ner45a
          Length = 155

 Score = 30.0 bits (66), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 10/80 (12%)

Query: 30  APAGTSSPCCMVEKCGTDLTDARRYHRRHKVCET--HSKAPVVIVAGLRQRFCQQCSRFH 87
           APAG +         G+DL      H R KV      S+A + IV  +R++     S   
Sbjct: 21  APAGLT--------IGSDLERVISTHTRAKVVNKAEKSEAIIQIVHAIREKRILSLSESG 72

Query: 88  ELYEFDETKRSCRRRLAGHN 107
            + EF+   R   R L  HN
Sbjct: 73  RVREFELVYRVAARLLDAHN 92


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.132    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,900,298
Number of Sequences: 62578
Number of extensions: 138543
Number of successful extensions: 246
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 8
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)