Query 032937
Match_columns 130
No_of_seqs 108 out of 284
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 12:32:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ul4_A SPL4, squamosa promoter 100.0 3.5E-48 1.2E-52 279.0 -1.0 92 30-121 2-93 (94)
2 1ul5_A SPL7, squamosa promoter 100.0 3.3E-46 1.1E-50 266.0 -3.0 84 35-118 2-85 (88)
3 1wj0_A Squamosa promoter-bindi 100.0 1.3E-35 4.6E-40 198.5 0.7 59 35-93 2-60 (60)
4 1vk6_A NADH pyrophosphatase; 1 30.9 11 0.00037 29.7 0.1 37 51-88 100-136 (269)
5 2dt7_A Splicing factor 3A subu 24.7 18 0.00062 21.3 0.3 11 48-58 19-29 (38)
6 1gh9_A 8.3 kDa protein (gene M 24.0 20 0.00068 23.8 0.4 28 60-90 6-33 (71)
7 4a6q_A Histone deacetylase com 20.9 14 0.00047 27.8 -1.0 29 55-94 20-48 (143)
8 2jne_A Hypothetical protein YF 20.5 21 0.00073 25.6 0.0 32 54-85 57-89 (101)
9 2lau_A THAP domain-containing 18.8 48 0.0016 21.1 1.4 14 33-46 1-14 (81)
10 2jrp_A Putative cytoplasmic pr 16.0 32 0.0011 23.5 0.1 29 57-85 30-59 (81)
No 1
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=3.5e-48 Score=278.99 Aligned_cols=92 Identities=60% Similarity=1.080 Sum_probs=80.5
Q ss_pred CCCCCCCCccccCCCcccccchhhhhhhhcchhhhcCCCEEEECCeehhHHHhhhhcccccccccccchHHHHHhhHHHh
Q 032937 30 APAGTSSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETKRSCRRRLAGHNER 109 (130)
Q Consensus 30 ~~~gs~~~~CqVdGC~~dLs~~k~Y~rR~rVCe~H~kAp~V~~~G~~qRFCQQC~rFH~LseFDg~kRSCR~rL~rhn~R 109 (130)
+++|++.++||||||.+||+.+|.||+||+|||.|++||+|+|+|+++||||||++||+|+|||++|||||++|++||+|
T Consensus 2 ~~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~R 81 (94)
T 1ul4_A 2 SSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNER 81 (94)
T ss_dssp ------CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCC
T ss_pred CCCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccccCCC
Q 032937 110 RRKSTAETTGEG 121 (130)
Q Consensus 110 RRk~~~~~~g~~ 121 (130)
|||+++++...+
T Consensus 82 RRk~~~~~~~~~ 93 (94)
T 1ul4_A 82 RRKSSGESGPSS 93 (94)
T ss_dssp CCSCCCC-----
T ss_pred hccCCCCcCCCC
Confidence 999999876543
No 2
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=3.3e-46 Score=265.95 Aligned_cols=84 Identities=43% Similarity=0.906 Sum_probs=80.2
Q ss_pred CCCccccCCCcccccchhhhhhhhcchhhhcCCCEEEECCeehhHHHhhhhcccccccccccchHHHHHhhHHHhhhcCc
Q 032937 35 SSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDETKRSCRRRLAGHNERRRKST 114 (130)
Q Consensus 35 ~~~~CqVdGC~~dLs~~k~Y~rR~rVCe~H~kAp~V~~~G~~qRFCQQC~rFH~LseFDg~kRSCR~rL~rhn~RRRk~~ 114 (130)
+.++||||||++||+.++.||+||+|||.|++||+|+++|+++||||||++||+|+|||++|||||++|++||+|||+++
T Consensus 2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~ 81 (88)
T 1ul5_A 2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP 81 (88)
T ss_dssp -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred CCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccc
Q 032937 115 AETT 118 (130)
Q Consensus 115 ~~~~ 118 (130)
.+..
T Consensus 82 ~~~~ 85 (88)
T 1ul5_A 82 VDKG 85 (88)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 7764
No 3
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1
Probab=100.00 E-value=1.3e-35 Score=198.54 Aligned_cols=59 Identities=64% Similarity=1.228 Sum_probs=57.2
Q ss_pred CCCccccCCCcccccchhhhhhhhcchhhhcCCCEEEECCeehhHHHhhhhcccccccc
Q 032937 35 SSPCCMVEKCGTDLTDARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFD 93 (130)
Q Consensus 35 ~~~~CqVdGC~~dLs~~k~Y~rR~rVCe~H~kAp~V~~~G~~qRFCQQC~rFH~LseFD 93 (130)
++++|||+||++||+.+|.||+||||||.|++||+|+++|+++||||||+|||+|+|||
T Consensus 2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD 60 (60)
T 1wj0_A 2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60 (60)
T ss_dssp -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence 56799999999999999999999999999999999999999999999999999999998
No 4
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=30.94 E-value=11 Score=29.69 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=29.1
Q ss_pred hhhhhhhhcchhhhcCCCEEEECCeehhHHHhhhhccc
Q 032937 51 ARRYHRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHE 88 (130)
Q Consensus 51 ~k~Y~rR~rVCe~H~kAp~V~~~G~~qRFCQQC~rFH~ 88 (130)
+..++++++-|+.+- ++.+..++...+.|..|+..|-
T Consensus 100 l~~w~~~~~fC~~CG-~~~~~~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 100 LAEFYRSHKYCGYCG-HEMYPSKTEWAMLCSHCRERYY 136 (269)
T ss_dssp HHHHHHTTSBCTTTC-CBEEECSSSSCEEESSSSCEEC
T ss_pred HHhhhhcCCccccCC-CcCccCCCceeeeCCCCCCEec
Confidence 446889999999875 4566678888999999997653
No 5
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.66 E-value=18 Score=21.35 Aligned_cols=11 Identities=36% Similarity=0.963 Sum_probs=6.0
Q ss_pred ccchhhhhhhh
Q 032937 48 LTDARRYHRRH 58 (130)
Q Consensus 48 Ls~~k~Y~rR~ 58 (130)
|..+|.||+||
T Consensus 19 lk~Ike~Hrr~ 29 (38)
T 2dt7_A 19 LKQIKEFHRKH 29 (38)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHhC
Confidence 34455666655
No 6
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=24.03 E-value=20 Score=23.81 Aligned_cols=28 Identities=21% Similarity=0.481 Sum_probs=21.7
Q ss_pred chhhhcCCCEEEECCeehhHHHhhhhccccc
Q 032937 60 VCETHSKAPVVIVAGLRQRFCQQCSRFHELY 90 (130)
Q Consensus 60 VCe~H~kAp~V~~~G~~qRFCQQC~rFH~Ls 90 (130)
.|+ ..+..++-.|....-|+ ||+-|.+.
T Consensus 6 ~C~--C~~~~~~~~~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 6 RCD--CGRALYSREGAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EET--TSCCEEEETTCSEEEET-TTEEEECC
T ss_pred ECC--CCCEEEEcCCCcEEECC-CCCeeeec
Confidence 477 55668888899999998 99776654
No 7
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=20.93 E-value=14 Score=27.83 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=22.0
Q ss_pred hhhhcchhhhcCCCEEEECCeehhHHHhhhhccccccccc
Q 032937 55 HRRHKVCETHSKAPVVIVAGLRQRFCQQCSRFHELYEFDE 94 (130)
Q Consensus 55 ~rR~rVCe~H~kAp~V~~~G~~qRFCQQC~rFH~LseFDg 94 (130)
--|.++||++++ -|+.+=++||.|+||..
T Consensus 20 idRektcPfLLR-----------vF~~~ng~hh~~~eF~~ 48 (143)
T 4a6q_A 20 IDREKTCPLLLR-----------VFTTNNGRHHRMDEFSR 48 (143)
T ss_dssp CCGGGSCCEEEE-----------EEEESSSSCCCGGGGCT
T ss_pred ccccCCCCeEEE-----------EEecCCCCCCCHHHccC
Confidence 468889988764 36655578999999974
No 8
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=20.49 E-value=21 Score=25.63 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=27.1
Q ss_pred hhhhhcchhhhcCCCEEEEC-CeehhHHHhhhh
Q 032937 54 YHRRHKVCETHSKAPVVIVA-GLRQRFCQQCSR 85 (130)
Q Consensus 54 Y~rR~rVCe~H~kAp~V~~~-G~~qRFCQQC~r 85 (130)
.|.+.-.||..-..+.|+.+ |...-|||+|.-
T Consensus 57 ~f~~~a~CPdC~q~LevLkACGAvdYFC~~chg 89 (101)
T 2jne_A 57 FIEMKALCPDCHQPLQVLKACGAVDYFCQHGHG 89 (101)
T ss_dssp EEEEEEECTTTCSBCEEEEETTEEEEEETTTTE
T ss_pred hhhccccCcchhhHHHHHHHhcCcchhhccCCc
Confidence 35778889999999999976 899999999964
No 9
>2lau_A THAP domain-containing protein 11; zinc finger, protein-DNA complex, DNA binding domain, transc factor, CCCH, transcription-DNA complex; NMR {Homo sapiens}
Probab=18.75 E-value=48 Score=21.05 Aligned_cols=14 Identities=29% Similarity=0.596 Sum_probs=11.2
Q ss_pred CCCCCccccCCCcc
Q 032937 33 GTSSPCCMVEKCGT 46 (130)
Q Consensus 33 gs~~~~CqVdGC~~ 46 (130)
||....|-|.||..
T Consensus 1 g~pG~~C~v~gC~n 14 (81)
T 2lau_A 1 GSPGFTCCVPGCYN 14 (81)
T ss_dssp CCSCCSCCCSSSSS
T ss_pred CCCCCEEEeCCCcC
Confidence 56677899999974
No 10
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=15.98 E-value=32 Score=23.52 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=23.3
Q ss_pred hhcchhhhcCCCEEEEC-CeehhHHHhhhh
Q 032937 57 RHKVCETHSKAPVVIVA-GLRQRFCQQCSR 85 (130)
Q Consensus 57 R~rVCe~H~kAp~V~~~-G~~qRFCQQC~r 85 (130)
..-.||..-....|+-+ |...-|||+|+-
T Consensus 30 ~~afCPeCgq~Le~lkACGA~~yFC~~C~~ 59 (81)
T 2jrp_A 30 LQALCPDCRQPLQVLKACGAVDYFCQNGHG 59 (81)
T ss_dssp EEEECSSSCSCCCEEEETTEEEECCTTTTC
T ss_pred CcccCcchhhHHHHHHhcCCcCeeeccCCC
Confidence 34479998888888754 889999999984
Done!