BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032940
(130 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8S1Z1|UTP11_ORYSJ Probable U3 small nucleolar RNA-associated protein 11 OS=Oryza
sativa subsp. japonica GN=Os01g0810000 PE=2 SV=2
Length = 229
Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 84/110 (76%), Positives = 101/110 (91%)
Query: 1 MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
MSS RNAI RRAHKERAQP+SRKKFGLLEKHKDY+VRAKA+ +KEETIR+LKEKA+FRNP
Sbjct: 1 MSSLRNAIQRRAHKERAQPESRKKFGLLEKHKDYIVRAKAFHQKEETIRKLKEKASFRNP 60
Query: 61 DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSER 110
DEFY KMI +K VDG+HR + EANKYT++EL+L+KT+D+GYILQ +QSE+
Sbjct: 61 DEFYFKMINSKTVDGIHRPKPEANKYTEDELMLLKTKDMGYILQGIQSEK 110
>sp|Q9M223|UTP11_ARATH Probable U3 small nucleolar RNA-associated protein 11
OS=Arabidopsis thaliana GN=At3g60360 PE=1 SV=1
Length = 228
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 77/115 (66%), Positives = 97/115 (84%)
Query: 1 MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
MSS RNAIPR AHKER+QP++RK+FG+LEKHKDY++RA AY KK+ET++ L++KAAF+NP
Sbjct: 1 MSSLRNAIPRPAHKERSQPEARKRFGILEKHKDYIIRANAYHKKQETLKILRQKAAFKNP 60
Query: 61 DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNGRDK 115
DEF KMI +K VDG HR + E NKY+ EEL++MKTQDIGY+ QK QSE+N DK
Sbjct: 61 DEFNFKMINSKTVDGRHRPKDEVNKYSAEELMIMKTQDIGYVFQKWQSEKNKIDK 115
>sp|Q55C50|UTP11_DICDI Probable U3 small nucleolar RNA-associated protein 11
OS=Dictyostelium discoideum GN=utp11 PE=3 SV=1
Length = 250
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 84/120 (70%), Gaps = 11/120 (9%)
Query: 1 MSSR--RNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFR 58
MSS R +P+RA +ER QP+S KK G LE+ KDYV RAK Y K +T+++LK +AAF+
Sbjct: 1 MSSMNLRRLLPQRAKQERPQPESSKKKGFLERKKDYVERAKDYNNKRDTLKKLKLQAAFK 60
Query: 59 NPDEFYLKMIKTKIVDGVHRLESEANKYT--QEELILMKTQDIGYILQKLQSERNGRDKR 116
NPDEF KMI +K+VDGVH SE +K + +E++I +KTQDI Y LQS+R DK+
Sbjct: 61 NPDEFNYKMISSKLVDGVH---SEISKTSLKKEQIIDIKTQDILY----LQSKRRADDKK 113
>sp|Q9Y3A2|UTP11_HUMAN Probable U3 small nucleolar RNA-associated protein 11 OS=Homo
sapiens GN=UTP11L PE=1 SV=2
Length = 253
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 67/93 (72%)
Query: 10 RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK 69
+R H+ER+QP RK GLLEK KDY +RA YRKK+E ++ L++KA +NPDEFY KM +
Sbjct: 13 QREHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTR 72
Query: 70 TKIVDGVHRLESEANKYTQEELILMKTQDIGYI 102
K+ DGVH ++ + T E+L LM+TQD+ YI
Sbjct: 73 VKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYI 105
>sp|Q9CZJ1|UTP11_MOUSE Probable U3 small nucleolar RNA-associated protein 11 OS=Mus
musculus GN=Utp11l PE=2 SV=1
Length = 253
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 65/92 (70%)
Query: 11 RAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKT 70
R H+ER+QP RK+ GLLEK KDY +RA Y KK++ +R L++KA +NPDEFY KM +
Sbjct: 14 REHRERSQPGFRKRLGLLEKKKDYKLRANDYHKKQDFLRALRKKALEKNPDEFYYKMTRA 73
Query: 71 KIVDGVHRLESEANKYTQEELILMKTQDIGYI 102
K+ DGVH + + T E+L LM+TQDI YI
Sbjct: 74 KLQDGVHIFKENKEEVTAEQLKLMRTQDIKYI 105
>sp|Q8R5K5|UTP11_RAT Probable U3 small nucleolar RNA-associated protein 11 OS=Rattus
norvegicus GN=Utp11l PE=2 SV=1
Length = 253
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 67/93 (72%)
Query: 10 RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK 69
+R ++ER+QP RK GLLEK KDY +RA YRKK+E ++ L++KA +NPDEFY KM +
Sbjct: 13 QREYRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTR 72
Query: 70 TKIVDGVHRLESEANKYTQEELILMKTQDIGYI 102
K+ DGVH ++ + T E+L LM+TQD+ YI
Sbjct: 73 VKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYI 105
>sp|Q10106|UTP11_SCHPO Probable U3 small nucleolar RNA-associated protein 11
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC18G6.06 PE=3 SV=1
Length = 249
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 72/109 (66%)
Query: 2 SSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPD 61
SS +NA R+ H+ERAQP R+K+GLLEK KDY RA+ Y+ K++ ++RL+EKA RNPD
Sbjct: 3 SSFKNAGQRKNHRERAQPFERRKWGLLEKRKDYAQRAQDYKTKQKKLKRLREKALERNPD 62
Query: 62 EFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSER 110
EFY +M K +GV + E + + + ++KTQDIG+I ER
Sbjct: 63 EFYHEMTHKKTKNGVPLEQREDSTIDMDTIKILKTQDIGWIRHHRNVER 111
>sp|Q9W3C0|UTP11_DROME Probable U3 small nucleolar RNA-associated protein 11 OS=Drosophila
melanogaster GN=CG1789 PE=2 SV=1
Length = 237
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 73/112 (65%), Gaps = 2/112 (1%)
Query: 1 MSSRRNAIP--RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFR 58
MSS +NA ++ H+ER QP+SR+ G LEK KDY RA +KK++T++ L +A +
Sbjct: 1 MSSWKNASKSNQKVHRERHQPESRQHLGFLEKKKDYKKRAIDAQKKQKTLKLLYRRAQNK 60
Query: 59 NPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSER 110
NPDEFY MI +K+ + H + +++T E+L LM+TQD+ Y++ K ER
Sbjct: 61 NPDEFYHHMINSKLSNDEHHEKDTKDEHTPEQLALMQTQDLKYVVMKRTMER 112
>sp|P34247|UTP11_YEAST U3 small nucleolar RNA-associated protein 11 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UTP11 PE=1
SV=2
Length = 250
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 63/101 (62%), Gaps = 7/101 (6%)
Query: 8 IPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKM 67
+ ++ H+ER+Q SR ++G LEKHKDYV RA+ + +K+ T++ L+EKA RNPDE+Y M
Sbjct: 8 VQKKQHRERSQLTSRSRYGFLEKHKDYVKRAQDFHRKQSTLKVLREKAKERNPDEYYHAM 67
Query: 68 ------IKTKIVDGVHRLESEANKYTQEELILMKTQDIGYI 102
K ++ H E E + +++ L+KTQD Y+
Sbjct: 68 HSRKTDAKGLLISSRHGDE-EDESLSMDQVKLLKTQDSNYV 107
>sp|A6ZZL7|UTP11_YEAS7 U3 small nucleolar RNA-associated protein 11 OS=Saccharomyces
cerevisiae (strain YJM789) GN=UTP11 PE=3 SV=1
Length = 250
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 63/101 (62%), Gaps = 7/101 (6%)
Query: 8 IPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKM 67
+ ++ H+ER+Q SR ++G LEKHKDYV RA+ + +K+ T++ L+EKA RNPDE+Y M
Sbjct: 8 VQKKQHRERSQLTSRSRYGFLEKHKDYVKRAQDFHRKQSTLKVLREKAKERNPDEYYHAM 67
Query: 68 ------IKTKIVDGVHRLESEANKYTQEELILMKTQDIGYI 102
K ++ H E E + +++ L+KTQD Y+
Sbjct: 68 HSRKTDAKGLLISSRHGDE-EDESLSMDQVKLLKTQDSNYV 107
>sp|B5VM59|UTP11_YEAS6 U3 small nucleolar RNA-associated protein 11 OS=Saccharomyces
cerevisiae (strain AWRI1631) GN=UTP11 PE=3 SV=1
Length = 250
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 63/101 (62%), Gaps = 7/101 (6%)
Query: 8 IPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKM 67
+ ++ H+ER+Q SR ++G LEKHKDYV RA+ + +K+ T++ L+EKA RNPDE+Y M
Sbjct: 8 VQKKQHRERSQLTSRSRYGFLEKHKDYVKRAQDFHRKQSTLKVLREKAKERNPDEYYHAM 67
Query: 68 ------IKTKIVDGVHRLESEANKYTQEELILMKTQDIGYI 102
K ++ H E E + +++ L+KTQD Y+
Sbjct: 68 HSRKTDAKGLLISSRHGDE-EDESLSMDQVKLLKTQDSNYV 107
>sp|Q09462|UTP11_CAEEL Probable U3 small nucleolar RNA-associated protein 11
OS=Caenorhabditis elegans GN=C16C10.2 PE=3 SV=1
Length = 262
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 80/142 (56%), Gaps = 22/142 (15%)
Query: 10 RRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK 69
+R H+ER+QP++R+K+G LEK KDY +RA+ Y+KK +TI++LK+ A +N DE++ M+
Sbjct: 14 QRQHRERSQPEARRKYGELEKKKDYKLRAEDYQKKRDTIKKLKKSAMDKNQDEYHHHMVN 73
Query: 70 TKI-VDGVH---RLESEANKYTQEELILMKTQDIGYILQKLQSER--------------- 110
++ DG H + E+E + TQ + L +D+ Y+ KL E+
Sbjct: 74 SETWADGRHFDKKTEAEETE-TQIQKKLGSLKDLEYVKFKLNEEKKKIDEMKGELHFADS 132
Query: 111 --NGRDKRNKIYIWTKSYIACF 130
NG+ + +++ T S F
Sbjct: 133 SLNGKGNTHTVFVDTDSEAKSF 154
>sp|Q9U178|UTP11_LEIMA Probable U3 small nucleolar RNA-associated protein 11
OS=Leishmania major GN=L374.02 PE=3 SV=1
Length = 361
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 8 IPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKM 67
+ R+ H ER+QP+SR+ G LEKHKD+V+RAK + K ++ +K AA RNPDEF + M
Sbjct: 18 LKRKTHLERSQPKSRQHLGQLEKHKDHVLRAKKRKVKVRRLQEIKRAAAQRNPDEFNIGM 77
Query: 68 IKT 70
K
Sbjct: 78 TKA 80
>sp|Q8I4V5|UTP11_PLAF7 Probable U3 small nucleolar RNA-associated protein 11 OS=Plasmodium
falciparum (isolate 3D7) GN=PFL2295w PE=3 SV=1
Length = 212
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 61/111 (54%), Gaps = 8/111 (7%)
Query: 1 MSSRRNAIPRRAHKERAQPQSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNP 60
MS+ +N IP+R + ER Q + R G LEK DY R + Y+KK++ LKEK +NP
Sbjct: 1 MSNFKNIIPKRTYLERGQAKHRLHLGELEKKVDYGKRREIYKKKKKIENVLKEKIMTKNP 60
Query: 61 DEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERN 111
DEF+ M+ +++ +E N +EE +L K + Q+L+ + N
Sbjct: 61 DEFHTGMVHSRV--------TEDNVLVREEKVLKKEVQLKNKRQELKEQTN 103
>sp|Q54DV3|Y2016_DICDI von Willebrand factor A domain-containing protein DDB_G0292016
OS=Dictyostelium discoideum GN=DDB_G0292016 PE=4 SV=1
Length = 918
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 23 KKFGLLEKHKDYVVRAKAYRKKEETIRRL 51
KK+GL+ KH Y+V A + EET++ +
Sbjct: 597 KKYGLVSKHTSYIVTADSDNVTEETMKTV 625
>sp|Q80TC5|POGK_MOUSE Pogo transposable element with KRAB domain OS=Mus musculus GN=Pogk
PE=2 SV=2
Length = 607
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 20 QSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRL 79
Q+ K+FG+LEK+ + K + +RR AFR P ++ ++ + V +
Sbjct: 219 QAAKQFGVLEKNVRDWRKVKPQLQNAHAMRR-----AFRGPKNGRFALVDQRVAEYVRYM 273
Query: 80 ESEANKYTQEELIL 93
+++ + T+E + L
Sbjct: 274 QAKGDPITREAMQL 287
>sp|Q9P215|POGK_HUMAN Pogo transposable element with KRAB domain OS=Homo sapiens GN=POGK
PE=1 SV=2
Length = 609
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 20 QSRKKFGLLEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRL 79
Q+ K+FG+LEK+ + K + +RR AFR P ++ ++ + V +
Sbjct: 219 QAAKQFGVLEKNVRDWRKVKPQLQNAHAMRR-----AFRGPKNGRFALVDQRVAEYVRYM 273
Query: 80 ESEANKYTQEELIL 93
+++ + T+E + L
Sbjct: 274 QAKGDPITREAMQL 287
>sp|Q54DU5|Y2028_DICDI von Willebrand factor A domain-containing protein DDB_G0292028
OS=Dictyostelium discoideum GN=DDB_G0292028 PE=4 SV=1
Length = 932
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 23 KKFGLLEKHKDYVVRAKAYRKKEETIRRLK 52
K+FGL+ KH Y+V A + + EET++ ++
Sbjct: 626 KRFGLVSKHTSYIVTADSDKVTEETMKTVQ 655
>sp|B8D5U9|RL30_DESK1 50S ribosomal protein L30P OS=Desulfurococcus kamchatkensis (strain
1221n / DSM 18924) GN=rpl30p PE=3 SV=1
Length = 162
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 26 GLLEKHKDYVVRAKAYRKKEETIRRLKEKA--AFRNPDEFYLKMIKTKIVDGVHRLESEA 83
G+LEK KD+V + + + + + +A R DE+ K+ + G+ +E A
Sbjct: 47 GMLEKVKDWVTWGEINKPTLVKLFKARGRASGGIRITDEYIAKVFAEQ---GIKDIEGFA 103
Query: 84 NKYTQEELILMKTQDIGYILQKLQSERNGRDKRNK 118
+ +L+L K ++I + +L R G D +K
Sbjct: 104 EALLEGKLVLHKLENIVKPVFRLHPPRGGFDGSSK 138
>sp|Q68BL8|OLM2B_HUMAN Olfactomedin-like protein 2B OS=Homo sapiens GN=OLFML2B PE=2 SV=2
Length = 750
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 54 KAAFRNPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQSERNGR 113
+ AF D L + TK+V V +LE E +K +E + I ++++++E N R
Sbjct: 155 EGAFYGLDLLKLHSVTTKLVGRVDKLEEEVSKNLTKE-----NEQIKEDMEEIRTEMNKR 209
Query: 114 DKRN 117
K N
Sbjct: 210 GKEN 213
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,864,321
Number of Sequences: 539616
Number of extensions: 1660989
Number of successful extensions: 6579
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 6520
Number of HSP's gapped (non-prelim): 129
length of query: 130
length of database: 191,569,459
effective HSP length: 96
effective length of query: 34
effective length of database: 139,766,323
effective search space: 4752054982
effective search space used: 4752054982
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)