Query 032940
Match_columns 130
No_of_seqs 113 out of 220
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 12:36:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032940.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032940hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jws_A GA88; evolution, foldin 51.0 5.4 0.00018 25.9 1.1 35 42-80 11-46 (56)
2 2fs1_A PSD-1; solution structu 27.1 21 0.00071 23.1 0.9 33 42-78 11-44 (56)
3 1q2z_A ATP-dependent DNA helic 22.5 1.2E+02 0.004 21.2 4.3 45 46-91 68-112 (120)
4 1gjs_A Immunoglobulin G bindin 21.2 33 0.0011 22.7 1.0 34 41-78 21-55 (65)
5 2l9s_A PHD finger protein 12; 11.7 1.3E+02 0.0045 18.4 2.0 16 48-63 14-29 (45)
6 1rw2_A ATP-dependent DNA helic 11.0 2E+02 0.0069 21.0 3.2 46 46-92 99-144 (152)
7 2ki0_A DS119; beta-alpha-beta, 8.2 2.5E+02 0.0084 16.2 2.1 15 46-60 15-29 (36)
8 4fla_A Regulation of nuclear P 7.9 3.4E+02 0.012 19.8 3.4 23 35-57 120-142 (152)
9 3h0g_A DNA-directed RNA polyme 7.9 1.8E+02 0.0061 29.4 2.3 34 59-107 815-848 (1752)
10 1qve_A Fimbrial protein; type 7.6 1.4E+02 0.0049 19.9 1.1 10 32-41 1-10 (126)
No 1
>2jws_A GA88; evolution, folding, protein design, protein structure, de novo protein; NMR {Artificial gene} PDB: 2kdl_A 2lhg_A 2lhc_A 2lhd_A 2lhe_A 2kdm_A 2jwu_A
Probab=51.02 E-value=5.4 Score=25.87 Aligned_cols=35 Identities=40% Similarity=0.640 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCchhhhhhh-ccccCCccccc
Q 032940 42 RKKEETIRRLKEKAAFRNPDEFYLKMIK-TKIVDGVHRLE 80 (130)
Q Consensus 42 ~~K~~~lk~Lk~KA~~rNpDEFyf~M~~-~k~~~Gvh~~~ 80 (130)
..|...|..|..-+- -||||.-|| +++++||.-.+
T Consensus 11 ~aK~~ai~el~~agi----~e~~~n~innakTVeGV~alk 46 (56)
T 2jws_A 11 QAKEEAIKELVDAGI----AEKYIKLIANAKTVEGVWTLK 46 (56)
T ss_dssp HHHHHHHHHHHHHTC----CHHHHHHHHTCSCHHHHHHHH
T ss_pred hhhHhHHHHHHHhhh----HHHHHHHhhcccccccccchH
Confidence 457788888887664 388998875 68888876443
No 2
>2fs1_A PSD-1; solution structure, protein binding; NMR {Finegoldia magna atcc 29328}
Probab=27.09 E-value=21 Score=23.07 Aligned_cols=33 Identities=36% Similarity=0.716 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCchhhhhhh-ccccCCccc
Q 032940 42 RKKEETIRRLKEKAAFRNPDEFYLKMIK-TKIVDGVHR 78 (130)
Q Consensus 42 ~~K~~~lk~Lk~KA~~rNpDEFyf~M~~-~k~~~Gvh~ 78 (130)
..|+..|+.|..--. ..||+.-|| ++|++||..
T Consensus 11 eAKe~Ai~El~~~GI----sd~y~~~In~AkTvEgv~~ 44 (56)
T 2fs1_A 11 QAKEAAIKELKQYGI----GDYYIKLINNAKTVEGVES 44 (56)
T ss_dssp HHHHHHHHHHHHHCC----CHHHHHHHHTCSSSHHHHH
T ss_pred HHHHHHHHHHHHcCc----hHHHHHHhhhhhhHHHHHH
Confidence 345666666654322 678888876 688888754
No 3
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=22.48 E-value=1.2e+02 Score=21.17 Aligned_cols=45 Identities=20% Similarity=0.356 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhCCCchhhhhhhccccCCccccccccCCCCHHHH
Q 032940 46 ETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRLESEANKYTQEEL 91 (130)
Q Consensus 46 ~~lk~Lk~KA~~rNpDEFyf~M~~~k~~~Gvh~~~~~~~~~t~e~~ 91 (130)
+=|..|+.+...++=.+|...+...++ +-+.....+....|+++-
T Consensus 68 ~Fl~~Lk~~~~~~~l~~FW~~iv~~~l-gLI~~~E~~~S~vt~eeA 112 (120)
T 1q2z_A 68 NFLKALQEKVEIKQLNHFWEIVVQDGI-TLITKEEASGSSVTAEEA 112 (120)
T ss_dssp HHHHHHHHHHHTTSTTHHHHHHHHTTC-CSCCSTTSSSCCCCHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHCCc-CCCcHhhccccCCCHHHH
Confidence 347788888888887889886655332 222222333456777764
No 4
>1gjs_A Immunoglobulin G binding protein G; immunoglobulin-binding protein, bacterial surface protein, albumin binding; NMR {Streptococcus SP} SCOP: a.8.1.2 PDB: 1gjt_A
Probab=21.18 E-value=33 Score=22.73 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCchhhhhhh-ccccCCccc
Q 032940 41 YRKKEETIRRLKEKAAFRNPDEFYLKMIK-TKIVDGVHR 78 (130)
Q Consensus 41 y~~K~~~lk~Lk~KA~~rNpDEFyf~M~~-~k~~~Gvh~ 78 (130)
-..|+..|..|..--. ..||+.-|| ++|++||..
T Consensus 21 ~eAKe~Ai~EL~~~GI----sd~y~~~In~AkTvEgV~a 55 (65)
T 1gjs_A 21 AEAKVLANRELDKYGV----SDYYKNLINNAKTVEGVKA 55 (65)
T ss_dssp HHHHHHHHHHHHHHTC----CHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHcCc----cHHHHHhhhccchHHHHHH
Confidence 3456777777665332 678888876 688888754
No 5
>2l9s_A PHD finger protein 12; protein-peptide complex, amphipathic helix motif, transcript; NMR {Homo sapiens} PDB: 2lkm_A
Probab=11.66 E-value=1.3e+02 Score=18.44 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhCCCch
Q 032940 48 IRRLKEKAAFRNPDEF 63 (130)
Q Consensus 48 lk~Lk~KA~~rNpDEF 63 (130)
+..|=+-|...||.+|
T Consensus 14 f~~Li~aA~~~NP~qF 29 (45)
T 2l9s_A 14 FELLIAAAMERNPTQF 29 (45)
T ss_dssp HHHHHHHHHHSSCCCS
T ss_pred HHHHHHHHHHhChhhh
Confidence 3456677899999988
No 6
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=11.04 E-value=2e+02 Score=21.04 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhCCCchhhhhhhccccCCccccccccCCCCHHHHH
Q 032940 46 ETIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRLESEANKYTQEELI 92 (130)
Q Consensus 46 ~~lk~Lk~KA~~rNpDEFyf~M~~~k~~~Gvh~~~~~~~~~t~e~~k 92 (130)
+=|..|+.+...++=.+|...+...++ +-+.....+....|+++-+
T Consensus 99 ~Fl~~LK~~l~~~~l~~FW~~Iv~~~l-gLI~~~Es~~S~Vt~eeA~ 144 (152)
T 1rw2_A 99 NFLKALQEKVEIKQLNHFWEIVVQDGI-TLITKEEASGSSVTAEEAK 144 (152)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHTC-SSCSSSSSSSCSCCTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHCCc-ccccHhhccccCCCHHHHH
Confidence 347778888888888888886544322 2222223334456766643
No 7
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=8.16 E-value=2.5e+02 Score=16.23 Aligned_cols=15 Identities=40% Similarity=0.512 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhhCC
Q 032940 46 ETIRRLKEKAAFRNP 60 (130)
Q Consensus 46 ~~lk~Lk~KA~~rNp 60 (130)
+.|+.|++.|..-|-
T Consensus 15 eelkklkeeakkani 29 (36)
T 2ki0_A 15 EELKKLKEEAKKANI 29 (36)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhccE
Confidence 568888888877764
No 8
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=7.88 E-value=3.4e+02 Score=19.79 Aligned_cols=23 Identities=9% Similarity=0.265 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 032940 35 VVRAKAYRKKEETIRRLKEKAAF 57 (130)
Q Consensus 35 ~~RA~dy~~K~~~lk~Lk~KA~~ 57 (130)
..++.+|+.|.++++.++.+...
T Consensus 120 e~~leeyK~Kl~rv~~vkkeL~~ 142 (152)
T 4fla_A 120 EKKLEEYKQKLARVTQVRKELKS 142 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999998887654
No 9
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=7.87 E-value=1.8e+02 Score=29.39 Aligned_cols=34 Identities=29% Similarity=0.699 Sum_probs=24.2
Q ss_pred CCCchhhhhhhccccCCccccccccCCCCHHHHHHhhhhcHHHHHHHHH
Q 032940 59 NPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQ 107 (130)
Q Consensus 59 NpDEFyf~M~~~k~~~Gvh~~~~~~~~~t~e~~kl~kTQDl~Yv~~~~~ 107 (130)
+|-||||+.+..| +| |..- -+||-|-+|+.-++.
T Consensus 815 ~p~EfFfhtmggR--eG----------LiDT---AvKTA~SGYLqRRLV 848 (1752)
T 3h0g_A 815 TPQEFFFHAMAGR--EG----------LIDT---AVKTAETGYIQRRLV 848 (1752)
T ss_dssp CHHHHHHHHHHHT--TT----------TTHH---HHTTTHHHHHHHHHH
T ss_pred CHHHHHHHhhhhh--hh----------hhHh---hhhcCcCchhHHHHH
Confidence 6889999988777 45 2222 168999999976554
No 10
>1qve_A Fimbrial protein; type IV pilin, lectin, adhesin, cell adhesion; 1.54A {Pseudomonas aeruginosa} SCOP: d.24.1.1 PDB: 1rg0_A 1hpw_A
Probab=7.56 E-value=1.4e+02 Score=19.89 Aligned_cols=10 Identities=20% Similarity=0.049 Sum_probs=7.2
Q ss_pred ccHHHHHHHH
Q 032940 32 KDYVVRAKAY 41 (130)
Q Consensus 32 KDY~~RA~dy 41 (130)
+||+.||+--
T Consensus 1 Q~Y~~RAqvs 10 (126)
T 1qve_A 1 ISEFARAQLS 10 (126)
T ss_dssp CCHHHHHHHH
T ss_pred CchHHHHHHH
Confidence 5888888753
Done!