Query 032940
Match_columns 130
No_of_seqs 113 out of 220
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 12:36:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032940.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032940hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j5ya1 a.8.1.2 (A:1-53) PAB { 59.4 2.3 0.00016 25.7 1.9 34 42-78 9-43 (53)
2 d1gjsa_ a.8.1.2 (A:) IgG bindi 58.0 1.5 0.00011 27.6 0.9 47 28-78 8-55 (65)
3 d1rw2a_ a.118.19.1 (A:) C-term 14.6 74 0.0054 21.6 3.6 45 47-92 100-144 (152)
4 d1pzra_ a.38.2.1 (A:) Erythron 11.8 37 0.0027 20.3 1.0 32 61-92 3-34 (60)
5 d1smyd_ e.29.1.2 (D:) RNA-poly 11.4 18 0.0013 33.4 -0.8 34 59-107 1065-1098(1504)
6 d1twfa_ e.29.1.2 (A:) RBP1 {Ba 9.1 28 0.002 31.3 -0.4 35 59-108 808-842 (1449)
7 d1kv9a1 a.3.1.6 (A:561-664) Qu 7.0 2.1E+02 0.015 16.7 3.4 22 84-109 78-99 (104)
8 d1gpqa_ d.233.1.1 (A:) Inhibit 5.8 1.2E+02 0.0085 20.6 1.6 20 46-65 108-127 (127)
9 d1gdva_ a.3.1.1 (A:) Cytochrom 5.8 2.5E+02 0.018 15.4 3.1 19 84-106 63-81 (85)
10 d1s29a_ a.4.5.46 (A:) Lupus La 5.6 66 0.0048 20.3 0.2 9 62-70 19-27 (92)
No 1
>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId: 1260]}
Probab=59.38 E-value=2.3 Score=25.73 Aligned_cols=34 Identities=32% Similarity=0.545 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCchhhhhhh-ccccCCccc
Q 032940 42 RKKEETIRRLKEKAAFRNPDEFYLKMIK-TKIVDGVHR 78 (130)
Q Consensus 42 ~~K~~~lk~Lk~KA~~rNpDEFyf~M~~-~k~~~Gvh~ 78 (130)
+.|++.|+.|++- ==..+|||..|| .+|+.||..
T Consensus 9 ~AKe~AI~eLK~~---GIts~~y~~~InkaKTVEgV~a 43 (53)
T d2j5ya1 9 NAKEDAIAELKKA---GITSDFYFNAINKAKTVEEVNA 43 (53)
T ss_dssp HHHHHHHHHHHHT---TCCCHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHHc---CccHHHHHHHHHhhhhHHHHHH
Confidence 4577778877753 234689999988 578888754
No 2
>d1gjsa_ a.8.1.2 (A:) IgG binding protein G {Streptococcus sp., group G [TaxId: 1306]}
Probab=58.04 E-value=1.5 Score=27.62 Aligned_cols=47 Identities=23% Similarity=0.350 Sum_probs=34.8
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHhhCCCchhhhhhh-ccccCCccc
Q 032940 28 LEKHKDYVVRAKAYRKKEETIRRLKEKAAFRNPDEFYLKMIK-TKIVDGVHR 78 (130)
Q Consensus 28 LEKkKDY~~RA~dy~~K~~~lk~Lk~KA~~rNpDEFyf~M~~-~k~~~Gvh~ 78 (130)
=+++-|-+.-..--+.|+..|+.|++--- .+|||..|| .+|+.||.-
T Consensus 8 ~~k~ed~v~~~~L~~AKe~Ai~Elk~yGi----sdyy~nlIN~AKTVEGV~a 55 (65)
T d1gjsa_ 8 NAQHDEAVDANSLAEAKVLANRELDKYGV----SDYYKNLINNAKTVEGVKA 55 (65)
T ss_dssp CSSCCSSCTHHHHHHHHHHHHHHHHHHTC----CHHHHHHHHTCCSHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHcCc----hHHHHHHHhccchHHHHHH
Confidence 34555655556667788999999987654 589999998 688888753
No 3
>d1rw2a_ a.118.19.1 (A:) C-terminal domain of Ku80 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.60 E-value=74 Score=21.65 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhCCCchhhhhhhccccCCccccccccCCCCHHHHH
Q 032940 47 TIRRLKEKAAFRNPDEFYLKMIKTKIVDGVHRLESEANKYTQEELI 92 (130)
Q Consensus 47 ~lk~Lk~KA~~rNpDEFyf~M~~~k~~~Gvh~~~~~~~~~t~e~~k 92 (130)
=|..|+.++..+|-.+|....+..++ +=+.....+....|.||.+
T Consensus 100 FL~~LK~~~l~~~l~~FW~~i~~~~l-gLIs~~E~~~S~Vt~eeA~ 144 (152)
T d1rw2a_ 100 FLKALQEKVEIKQLNHFWEIVVQDGI-TLITKEEASGSSVTAEEAK 144 (152)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHTC-SSCSSSSSSSCSCCTHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHcCC-ccCChhhcccCCCCHHHHH
Confidence 46778888888887788866555443 1111112223467888765
No 4
>d1pzra_ a.38.2.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=11.79 E-value=37 Score=20.28 Aligned_cols=32 Identities=28% Similarity=0.343 Sum_probs=26.2
Q ss_pred CchhhhhhhccccCCccccccccCCCCHHHHH
Q 032940 61 DEFYLKMIKTKIVDGVHRLESEANKYTQEELI 92 (130)
Q Consensus 61 DEFyf~M~~~k~~~Gvh~~~~~~~~~t~e~~k 92 (130)
|.=.|.|...+..+|....-++.+.+|.|-++
T Consensus 3 ddelfsmldqrfgggedllms~~~gmtedkLR 34 (60)
T d1pzra_ 3 DDELFSMLDQRFGGGEDLLMSGDNGMTEEKLR 34 (60)
T ss_dssp HHHHHHHHHHHHHCCCSSCCCCCCSSHHHHHH
T ss_pred hHHHHHHHHHhhcCcchhhccCCCCCCHHHHH
Confidence 33468999999988988887777889999876
No 5
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus [TaxId: 274]}
Probab=11.44 E-value=18 Score=33.36 Aligned_cols=34 Identities=24% Similarity=0.458 Sum_probs=24.5
Q ss_pred CCCchhhhhhhccccCCccccccccCCCCHHHHHHhhhhcHHHHHHHHH
Q 032940 59 NPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQ 107 (130)
Q Consensus 59 NpDEFyf~M~~~k~~~Gvh~~~~~~~~~t~e~~kl~kTQDl~Yv~~~~~ 107 (130)
+|.||||+.+..| .|. .. . -+||-|-||+.-++.
T Consensus 1065 tP~EFFFHtMGGR--EGL----------ID--T-AVKTA~SGYLqRRLV 1098 (1504)
T d1smyd_ 1065 TVLEYFISSHGAR--KGG----------AD--T-ALRTADSGYLTRKLV 1098 (1504)
T ss_dssp CHHHHHHHHHHHH--HHH----------HH--H-HHHHSCSHHHHHHHH
T ss_pred CHHHHHhhcCCCc--chh----------hh--h-hccccccchhhHHHH
Confidence 6889999988877 341 11 1 268999999987775
No 6
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.11 E-value=28 Score=31.30 Aligned_cols=35 Identities=29% Similarity=0.686 Sum_probs=23.4
Q ss_pred CCCchhhhhhhccccCCccccccccCCCCHHHHHHhhhhcHHHHHHHHHH
Q 032940 59 NPDEFYLKMIKTKIVDGVHRLESEANKYTQEELILMKTQDIGYILQKLQS 108 (130)
Q Consensus 59 NpDEFyf~M~~~k~~~Gvh~~~~~~~~~t~e~~kl~kTQDl~Yv~~~~~~ 108 (130)
||.||||+.+.+| .|. -. --++|-|-||+.-+...
T Consensus 808 ~p~Eyf~h~~~gR--eGL----------iD---TAvkTa~sGYl~RrLvk 842 (1449)
T d1twfa_ 808 TPQEFFFHAMGGR--EGL----------ID---TAVKTAETGYIQRRLVK 842 (1449)
T ss_dssp CHHHHHHHHHHHH--HHH----------HH---HHHHHHHHHHHHHHHHH
T ss_pred cchheeeeeccch--hhh----------hh---hcccccccHHHHHHHHH
Confidence 6778888887776 331 11 12799999999766543
No 7
>d1kv9a1 a.3.1.6 (A:561-664) Quinoprotein alcohol dehydrogenase, C-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}
Probab=6.97 E-value=2.1e+02 Score=16.66 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=17.2
Q ss_pred CCCCHHHHHHhhhhcHHHHHHHHHHH
Q 032940 84 NKYTQEELILMKTQDIGYILQKLQSE 109 (130)
Q Consensus 84 ~~~t~e~~kl~kTQDl~Yv~~~~~~e 109 (130)
..||.+|+..+=+ ||..+...+
T Consensus 78 ~~Lsd~ei~~v~a----Yi~s~~~~~ 99 (104)
T d1kv9a1 78 DSLKPEEVEQIKL----YVMSREYED 99 (104)
T ss_dssp TTCCHHHHHHHHH----HHHHHHHHH
T ss_pred cCCCHHHHHHHHH----HHHHhCcch
Confidence 4699999998877 998866544
No 8
>d1gpqa_ d.233.1.1 (A:) Inhibitor of vertebrate lysozyme, Ivy {Escherichia coli [TaxId: 562]}
Probab=5.77 E-value=1.2e+02 Score=20.57 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhhCCCchhh
Q 032940 46 ETIRRLKEKAAFRNPDEFYL 65 (130)
Q Consensus 46 ~~lk~Lk~KA~~rNpDEFyf 65 (130)
+-|+.|=..-+..+|+-|+|
T Consensus 108 ~~m~a~L~~qL~~dPn~f~~ 127 (127)
T d1gpqa_ 108 TVLFAALTGSLENHPDGFNF 127 (127)
T ss_dssp HHHHHHHHSHHHHCTTSCCC
T ss_pred HHHHHHHHHHHHhCccccCC
Confidence 34666667778889999987
No 9
>d1gdva_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Red alga (Porphyra yezoensis) [TaxId: 2788]}
Probab=5.76 E-value=2.5e+02 Score=15.35 Aligned_cols=19 Identities=16% Similarity=0.357 Sum_probs=15.0
Q ss_pred CCCCHHHHHHhhhhcHHHHHHHH
Q 032940 84 NKYTQEELILMKTQDIGYILQKL 106 (130)
Q Consensus 84 ~~~t~e~~kl~kTQDl~Yv~~~~ 106 (130)
..||++|+..+-+ ||....
T Consensus 63 ~~Lsd~ei~~v~~----Yi~~~a 81 (85)
T d1gdva_ 63 GRLVDEDIEDAAN----YVLSQS 81 (85)
T ss_dssp TTSCHHHHHHHHH----HHHHHH
T ss_pred CCCCHHHHHHHHH----HHHHHH
Confidence 4699999998877 997543
No 10
>d1s29a_ a.4.5.46 (A:) Lupus La autoantigen N-terminal domain {Trypanosoma brucei [TaxId: 5691]}
Probab=5.61 E-value=66 Score=20.26 Aligned_cols=9 Identities=33% Similarity=0.792 Sum_probs=7.4
Q ss_pred chhhhhhhc
Q 032940 62 EFYLKMIKT 70 (130)
Q Consensus 62 EFyf~M~~~ 70 (130)
||||+-.|-
T Consensus 19 EfYFSd~NL 27 (92)
T d1s29a_ 19 EFYFSDVNV 27 (92)
T ss_dssp HHHTSHHHH
T ss_pred HHHccHhhh
Confidence 999997774
Done!