BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032941
(130 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255578910|ref|XP_002530308.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide,
putative [Ricinus communis]
gi|223530164|gb|EEF32075.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide,
putative [Ricinus communis]
Length = 146
Score = 204 bits (520), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 96/110 (87%), Positives = 106/110 (96%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MSNIVLFEDIFVV+K+DPDGKKFDKVSRIEAHSQNCDM+M LDVN+E+YPM VGDKFTMA
Sbjct: 1 MSNIVLFEDIFVVDKLDPDGKKFDKVSRIEAHSQNCDMFMHLDVNTEIYPMAVGDKFTMA 60
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
LAHTLNLDGTPDTGYYT GARKTLADKYEYIM+GKL+KI +EGSGK++KA
Sbjct: 61 LAHTLNLDGTPDTGYYTQGARKTLADKYEYIMNGKLYKISEEGSGKAVKA 110
>gi|224135363|ref|XP_002327199.1| predicted protein [Populus trichocarpa]
gi|222835569|gb|EEE74004.1| predicted protein [Populus trichocarpa]
Length = 148
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/109 (77%), Positives = 100/109 (91%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
SNI++FEDIFVV+K+DPDGKKFDKV+RIEAHSQNCDM+M LDVN+++YPM V DKFTMAL
Sbjct: 4 SNIIMFEDIFVVDKLDPDGKKFDKVTRIEAHSQNCDMFMHLDVNTDVYPMFVNDKFTMAL 63
Query: 62 AHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
AHTLNLDGTPDTGYYT G RKTLADKYEY+MHGKL++I +EGS ++ +
Sbjct: 64 AHTLNLDGTPDTGYYTQGGRKTLADKYEYVMHGKLYQIQEEGSRRATRT 112
>gi|15231714|ref|NP_191519.1| RNA polymerase Rpb8 [Arabidopsis thaliana]
gi|297817262|ref|XP_002876514.1| hypothetical protein ARALYDRAFT_907465 [Arabidopsis lyrata subsp.
lyrata]
gi|6996296|emb|CAB75457.1| putative protein [Arabidopsis thaliana]
gi|21554131|gb|AAM63211.1| RNA polymerase II subunit, putative [Arabidopsis thaliana]
gi|26453032|dbj|BAC43592.1| unknown protein [Arabidopsis thaliana]
gi|30793811|gb|AAP40358.1| unknown protein [Arabidopsis thaliana]
gi|297322352|gb|EFH52773.1| hypothetical protein ARALYDRAFT_907465 [Arabidopsis lyrata subsp.
lyrata]
gi|332646423|gb|AEE79944.1| RNA polymerase Rpb8 [Arabidopsis thaliana]
Length = 146
Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/109 (74%), Positives = 98/109 (89%), Gaps = 1/109 (0%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
SNI++FEDIFVV+K+DPDGKKFDKV+R+EA S N +M+M LDVN+E+YP+ VGDKFT+A+
Sbjct: 3 SNIIMFEDIFVVDKLDPDGKKFDKVTRVEARSHNLEMFMHLDVNTEVYPLAVGDKFTLAM 62
Query: 62 AHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
A TLNLDGTPDTGY+TPGA+KTLADKYEYIMHGKL+KI E GK+ KA
Sbjct: 63 APTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKIS-ERDGKTPKA 110
>gi|297847838|ref|XP_002891800.1| ATRPABC16.5 [Arabidopsis lyrata subsp. lyrata]
gi|297337642|gb|EFH68059.1| ATRPABC16.5 [Arabidopsis lyrata subsp. lyrata]
Length = 146
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/109 (75%), Positives = 98/109 (89%), Gaps = 1/109 (0%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
SNI+LFEDIFVV+K+DPDGKKFDKV+R++A S N +M+M LDVN+E+YP+ VGDKFT+AL
Sbjct: 3 SNIILFEDIFVVDKLDPDGKKFDKVTRVQATSHNLEMFMHLDVNTEVYPLAVGDKFTLAL 62
Query: 62 AHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
A TLNLDGTPDTGY+TPGA+KTLADKYEYIMHGKL+KI E GK+ KA
Sbjct: 63 APTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKIS-ERDGKTPKA 110
>gi|15221759|ref|NP_175827.1| RNA polymerase Rpb8 [Arabidopsis thaliana]
gi|4585968|gb|AAD25604.1|AC005287_6 RNA polymerase I, II and III 16.5 kDa subunit [Arabidopsis
thaliana]
gi|3372230|gb|AAC28252.1| RNA polymerase I, II and III 16.5 kDa subunit [Arabidopsis
thaliana]
gi|21555812|gb|AAM63939.1| RNA polymerase II subunit, putative [Arabidopsis thaliana]
gi|28466897|gb|AAO44057.1| At1g54250 [Arabidopsis thaliana]
gi|110735704|dbj|BAE99832.1| RNA polymerase I, II and III 16.5 kDa subunit [Arabidopsis
thaliana]
gi|332194950|gb|AEE33071.1| RNA polymerase Rpb8 [Arabidopsis thaliana]
Length = 146
Score = 172 bits (435), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 81/109 (74%), Positives = 98/109 (89%), Gaps = 1/109 (0%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
SNI+LFEDIFVV+++DPDGKKFDKV+R++A S N +M+M LDVN+E+YP+ VGDKFT+AL
Sbjct: 3 SNIILFEDIFVVDQLDPDGKKFDKVTRVQATSHNLEMFMHLDVNTEVYPLAVGDKFTLAL 62
Query: 62 AHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
A TLNLDGTPDTGY+TPGA+KTLADKYEYIMHGKL+KI E GK+ KA
Sbjct: 63 APTLNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKIS-ERDGKTPKA 110
>gi|192910796|gb|ACF06506.1| RNA polymerase [Elaeis guineensis]
Length = 145
Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/106 (69%), Positives = 90/106 (84%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF + +IDPDGKKFDKVSRIEA S+ DMYM LDVN+E+YP+ VGDKFTM LA T
Sbjct: 4 LLFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGDKFTMVLAPT 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
L+LDGTPD+GYY G RK+LADK+EY+MHGKL+KI +E SG ++K
Sbjct: 64 LSLDGTPDSGYYMQGQRKSLADKFEYVMHGKLYKISEESSGPNVKV 109
>gi|53793231|dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa subunit [Oryza
sativa Japonica Group]
Length = 396
Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats.
Identities = 73/105 (69%), Positives = 87/105 (82%), Gaps = 1/105 (0%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFEDIF V ++DPDGKKFD+VSRIEA S+ DMYM LDV +E+YPMR GD+FTM LA TL
Sbjct: 255 LFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMVLAPTL 314
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIG-DEGSGKSLK 109
NLDGTPDTG+YT RKTLADK++Y+MHGKL+KI D SG++ K
Sbjct: 315 NLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATK 359
>gi|225434042|ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3 isoform 1 [Vitis vinifera]
gi|359478220|ref|XP_003632088.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3 isoform 2 [Vitis vinifera]
gi|296084252|emb|CBI24640.3| unnamed protein product [Vitis vinifera]
Length = 145
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/105 (70%), Positives = 88/105 (83%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LF DIF V +IDPDGKKFDKVSRIEA S+ DMYM LDVN+E+YPM G+KF M+LA TL
Sbjct: 5 LFGDIFKVIQIDPDGKKFDKVSRIEAQSEQLDMYMQLDVNTEIYPMHAGEKFAMSLASTL 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
+LDGTPDTGYYT RK+LADK+EY+MHGKL+KI +EGSG ++K
Sbjct: 65 DLDGTPDTGYYTQAGRKSLADKFEYVMHGKLYKISEEGSGPNVKG 109
>gi|116792470|gb|ABK26380.1| unknown [Picea sitchensis]
Length = 145
Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 72/106 (67%), Positives = 89/106 (83%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V +IDPDGKKFDKVSRIEA S+ DMYMLLDVN ++YP+ VG+KF +ALA T
Sbjct: 4 LLFEDIFTVTRIDPDGKKFDKVSRIEARSEQFDMYMLLDVNIDVYPVSVGEKFAVALAPT 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
LNLDGTPD GY+ G RK+LADKYEY+M+GKL+ + +EGSG ++K
Sbjct: 64 LNLDGTPDNGYFIQGGRKSLADKYEYVMYGKLYNLSEEGSGANVKV 109
>gi|125556620|gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indica Group]
gi|125598367|gb|EAZ38147.1| hypothetical protein OsJ_22498 [Oryza sativa Japonica Group]
Length = 191
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 73/105 (69%), Positives = 87/105 (82%), Gaps = 1/105 (0%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFEDIF V ++DPDGKKFD+VSRIEA S+ DMYM LDV +E+YPMR GD+FTM LA TL
Sbjct: 50 LFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMVLAPTL 109
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIG-DEGSGKSLK 109
NLDGTPDTG+YT RKTLADK++Y+MHGKL+KI D SG++ K
Sbjct: 110 NLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATK 154
>gi|357165735|ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like [Brachypodium distachyon]
Length = 146
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/108 (68%), Positives = 85/108 (78%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFEDIFVV +IDPDGKKFD+V+RIEA S+ MYM LDV + +YPM GDKFTM LA TL
Sbjct: 5 LFEDIFVVNRIDPDGKKFDRVNRIEARSEQFHMYMQLDVATYVYPMHAGDKFTMVLAPTL 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAYET 113
NLDGTPDTGYYT RKTLADKY+Y+MHGKL+KI ++ SG ET
Sbjct: 65 NLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDSSGGQAAKVET 112
>gi|357123574|ref|XP_003563485.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like [Brachypodium distachyon]
Length = 144
Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/100 (72%), Positives = 84/100 (84%), Gaps = 2/100 (2%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFEDIFVV +IDPDGKKFD+V+RIEA S+ MYM LDV +++YPM GDKFTM LA TL
Sbjct: 5 LFEDIFVVSRIDPDGKKFDRVNRIEARSEQ--MYMQLDVATDVYPMHAGDKFTMVLAPTL 62
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSG 105
NLDGTPDTGYYT RKTLADKY+Y+MHGKL+KI ++ SG
Sbjct: 63 NLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDSSG 102
>gi|242037423|ref|XP_002466106.1| hypothetical protein SORBIDRAFT_01g001330 [Sorghum bicolor]
gi|241919960|gb|EER93104.1| hypothetical protein SORBIDRAFT_01g001330 [Sorghum bicolor]
Length = 145
Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/104 (64%), Positives = 83/104 (79%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFED F+V ++DPDGKKFDKVSR+EA S+ MYM LDV +++YP+R G+KF M LA TL
Sbjct: 5 LFEDTFIVSRLDPDGKKFDKVSRVEARSEQLGMYMQLDVATDVYPLRAGEKFNMVLAPTL 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLK 109
NLDGTPDTGYYT RKTLAD YEY+M GKL+KI ++ S ++ K
Sbjct: 65 NLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSQNAK 108
>gi|242032261|ref|XP_002463525.1| hypothetical protein SORBIDRAFT_01g001420 [Sorghum bicolor]
gi|241917379|gb|EER90523.1| hypothetical protein SORBIDRAFT_01g001420 [Sorghum bicolor]
Length = 145
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 67/104 (64%), Positives = 83/104 (79%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFED FVV ++DPDGKKFD+VSR+EA S+ MYM LDV +++YPM+ +KF M LA TL
Sbjct: 5 LFEDTFVVNRLDPDGKKFDRVSRVEARSEQLAMYMQLDVATDVYPMQPNEKFNMVLAPTL 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLK 109
NLDGTPDTGYYT RKTLAD YEY+MHGKL+KI ++ S ++ K
Sbjct: 65 NLDGTPDTGYYTQAGRKTLADNYEYVMHGKLYKISEDTSSQNAK 108
>gi|449468856|ref|XP_004152137.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like [Cucumis sativus]
gi|449484745|ref|XP_004156968.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like [Cucumis sativus]
Length = 144
Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 69/106 (65%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LF+DIF +E+++PDGKKFDKV+RIEA S+ DM+M LD+NSE+YP++ G+KF+MALA T
Sbjct: 4 LLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYPLKEGEKFSMALAPT 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
LNLDGTPDTGY+ G RK+LAD+YEY+M GKLF+I E SG KA
Sbjct: 64 LNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRIS-ESSGHGGKA 108
>gi|226505828|ref|NP_001147399.1| LOC100281008 [Zea mays]
gi|194699730|gb|ACF83949.1| unknown [Zea mays]
gi|195607894|gb|ACG25777.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
[Zea mays]
gi|195608506|gb|ACG26083.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
[Zea mays]
gi|195611040|gb|ACG27350.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
[Zea mays]
gi|195649823|gb|ACG44379.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
[Zea mays]
gi|195653495|gb|ACG46215.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
[Zea mays]
gi|238014148|gb|ACR38109.1| unknown [Zea mays]
gi|413932441|gb|AFW66992.1| DNA-directed RNA polymerase I, II, and III polypeptide isoform 1
[Zea mays]
gi|413932442|gb|AFW66993.1| DNA-directed RNA polymerase I, II, and III polypeptide isoform 2
[Zea mays]
gi|413932443|gb|AFW66994.1| DNA-directed RNA polymerase I, II, and III polypeptide isoform 3
[Zea mays]
gi|413932444|gb|AFW66995.1| DNA-directed RNA polymerase I, II, and III polypeptide isoform 4
[Zea mays]
Length = 146
Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 66/99 (66%), Positives = 80/99 (80%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFED FVV ++DPDGKKFD+VSR+EA S+ DMYM LDV +++YPM G+KF M +A TL
Sbjct: 5 LFEDTFVVTRLDPDGKKFDRVSRVEARSEQLDMYMQLDVATDVYPMHAGEKFNMVIAPTL 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGS 104
NLDGTPDTGYYT RKTLAD YEY+M GKL+KI ++ S
Sbjct: 65 NLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTS 103
>gi|195611242|gb|ACG27451.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
[Zea mays]
Length = 146
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 66/99 (66%), Positives = 80/99 (80%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFED FVV ++DPDGKKFD+VSR+EA S+ DMYM LDV +++YPM G+KF M +A TL
Sbjct: 5 LFEDTFVVTRLDPDGKKFDRVSRVEARSEQLDMYMQLDVATDVYPMHAGEKFNMVIAPTL 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGS 104
NLDGTPDTGYYT RKTLAD YEY+M GKL+KI ++ S
Sbjct: 65 NLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTS 103
>gi|147787866|emb|CAN73856.1| hypothetical protein VITISV_036454 [Vitis vinifera]
Length = 305
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/127 (58%), Positives = 88/127 (69%), Gaps = 22/127 (17%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LF DIF V +IDPDGKKFDKVSRIEA S+ DMYM LDVN+E+YPM G+KF M+LA TL
Sbjct: 5 LFGDIFKVIQIDPDGKKFDKVSRIEAQSEQLDMYMQLDVNTEIYPMHAGEKFAMSLASTL 64
Query: 66 NLDGTPDTGYYTP----------------------GARKTLADKYEYIMHGKLFKIGDEG 103
+LDGTPDTGYYT RK+LADK+EY+MHGKL+KI +EG
Sbjct: 65 DLDGTPDTGYYTQVKCCGMVVXLARTKRITAAVRVAGRKSLADKFEYVMHGKLYKISEEG 124
Query: 104 SGKSLKA 110
SG ++K
Sbjct: 125 SGPNVKG 131
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 80/106 (75%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
F+DIFVV+ DP GKKFDKVSRIEA S+ DM+M LDVN E YP++ G+KF M LA TL
Sbjct: 193 FFDDIFVVDGQDPGGKKFDKVSRIEASSEQYDMFMQLDVNIEAYPIQAGEKFRMVLAPTL 252
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+LDG T Y+T G K+LADK++Y+M+G ++K+ +EGSG +K Y
Sbjct: 253 HLDGADVTDYFTQGEXKSLADKFDYVMYGIIYKVSNEGSGPDVKGY 298
>gi|115456559|ref|NP_001051880.1| Os03g0845700 [Oryza sativa Japonica Group]
gi|29244685|gb|AAO73277.1| putative RNA polymerase [Oryza sativa Japonica Group]
gi|41469638|gb|AAS07361.1| putative RNA polymerase [Oryza sativa Japonica Group]
gi|108712076|gb|ABF99871.1| RNA polymerase Rpb8 family protein, expressed [Oryza sativa
Japonica Group]
gi|108712077|gb|ABF99872.1| RNA polymerase Rpb8 family protein, expressed [Oryza sativa
Japonica Group]
gi|113550351|dbj|BAF13794.1| Os03g0845700 [Oryza sativa Japonica Group]
gi|125588624|gb|EAZ29288.1| hypothetical protein OsJ_13351 [Oryza sativa Japonica Group]
gi|215692970|dbj|BAG88390.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 148
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 65/97 (67%), Positives = 79/97 (81%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFEDIF V ++DPDGKKFD+VSRIEA S DMYM LDV +++YPM GD+FTM L TL
Sbjct: 5 LFEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVLVPTL 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDE 102
NLDGTPD+ ++T RKTLADKYEY+MHGKL+KI ++
Sbjct: 65 NLDGTPDSAFFTQAGRKTLADKYEYVMHGKLYKISED 101
>gi|218194094|gb|EEC76521.1| hypothetical protein OsI_14307 [Oryza sativa Indica Group]
Length = 215
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 65/97 (67%), Positives = 79/97 (81%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFEDIF V ++DPDGKKFD+VSRIEA S DMYM LDV +++YPM GD+FTM L TL
Sbjct: 72 LFEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVLVPTL 131
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDE 102
NLDGTPD+ ++T RKTLADKYEY+MHGKL+KI ++
Sbjct: 132 NLDGTPDSAFFTQAGRKTLADKYEYVMHGKLYKISED 168
>gi|388509630|gb|AFK42881.1| unknown [Medicago truncatula]
Length = 145
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 86/106 (81%), Gaps = 2/106 (1%)
Query: 6 LFEDIFVVEKIDPDGKK-FDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
L EDIF VEK++PD KK F+KV+RIEA S+ DM+M LD+NSELYP+++G KF++AL T
Sbjct: 5 LLEDIFRVEKVNPDDKKLFEKVTRIEARSEKFDMFMQLDINSELYPLKMGQKFSLALVPT 64
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
LN DGTPDTGYY PG R+++AD YEY+M+GKL+++ EGSG KA
Sbjct: 65 LNPDGTPDTGYYNPGNRQSIADNYEYVMYGKLYRV-TEGSGGREKA 109
>gi|388522489|gb|AFK49306.1| unknown [Lotus japonicus]
Length = 144
Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/104 (63%), Positives = 85/104 (81%), Gaps = 2/104 (1%)
Query: 5 VLFEDIFVVEKIDPDGKK-FDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAH 63
+LF+DIF VEK++PD KK F+KV+RIEA S+ DM+M LD+NSELYP++VG KF + L
Sbjct: 4 ILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALLLVP 63
Query: 64 TLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKS 107
TLN DGTPDTGYY PG R++LAD +EY+M+GKL+KI EGSG+
Sbjct: 64 TLNPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKIS-EGSGRE 106
>gi|388510210|gb|AFK43171.1| unknown [Lotus japonicus]
Length = 139
Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/104 (63%), Positives = 85/104 (81%), Gaps = 2/104 (1%)
Query: 5 VLFEDIFVVEKIDPDGKK-FDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAH 63
+LF+DIF VEK++PD KK F+KV+RIEA S+ DM+M LD+NSELYP++VG KF + L
Sbjct: 4 ILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALLLVP 63
Query: 64 TLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKS 107
TLN DGTPDTGYY PG R++LAD +EY+M+GKL+KI EGSG+
Sbjct: 64 TLNPDGTPDTGYYIPGNRQSLADNFEYVMYGKLYKIS-EGSGRE 106
>gi|351723785|ref|NP_001237035.1| uncharacterized protein LOC100499860 [Glycine max]
gi|255627197|gb|ACU13943.1| unknown [Glycine max]
Length = 145
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 84/102 (82%), Gaps = 2/102 (1%)
Query: 6 LFEDIFVVEKIDPDGKK-FDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
LFEDIF VEK++PD KK FDKV+RIEA S+ DM+M LD+NSE+YP++VG KF + L T
Sbjct: 6 LFEDIFRVEKLNPDDKKLFDKVTRIEARSEKFDMFMHLDINSEIYPLKVGQKFALVLVST 65
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGK 106
LN DGTPDTGYYT +R++LA+ +EY+M+GKL++I EGSG+
Sbjct: 66 LNPDGTPDTGYYTQISRQSLANNFEYVMYGKLYRI-TEGSGR 106
>gi|358248504|ref|NP_001239637.1| uncharacterized protein LOC100816388 [Glycine max]
gi|255631646|gb|ACU16190.1| unknown [Glycine max]
gi|255640052|gb|ACU20317.1| unknown [Glycine max]
Length = 145
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 84/102 (82%), Gaps = 2/102 (1%)
Query: 6 LFEDIFVVEKIDPDGKK-FDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
LFEDIF VEK++PD KK FDKV+RIEA S+ DM+M LD+NSE+YP++VG KF + L +
Sbjct: 6 LFEDIFRVEKLNPDDKKLFDKVTRIEARSEKFDMFMHLDINSEVYPLKVGQKFALVLVSS 65
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGK 106
LN DGTPDTGYYT +R++LA+ +EY+M+GKL++I EGSG+
Sbjct: 66 LNPDGTPDTGYYTQISRQSLANNFEYVMYGKLYRI-TEGSGR 106
>gi|13094965|gb|AAK12101.1|AF323605_1 RNA polymerase I, II and III subunit RPB8, partial [Manihot
esculenta]
Length = 110
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/74 (83%), Positives = 69/74 (93%)
Query: 37 DMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKL 96
DM+M LDVN+E+YPM VGDKFTMALAHTLNLDGTPDTGYY GARKTLADKYEYIMHGKL
Sbjct: 1 DMFMHLDVNTEIYPMAVGDKFTMALAHTLNLDGTPDTGYYIQGARKTLADKYEYIMHGKL 60
Query: 97 FKIGDEGSGKSLKA 110
+KI +EGSGK++KA
Sbjct: 61 YKISEEGSGKAVKA 74
>gi|242096894|ref|XP_002438937.1| hypothetical protein SORBIDRAFT_10g028590 [Sorghum bicolor]
gi|241917160|gb|EER90304.1| hypothetical protein SORBIDRAFT_10g028590 [Sorghum bicolor]
Length = 149
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/117 (58%), Positives = 84/117 (71%), Gaps = 2/117 (1%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LF+D F V ++DPDGKKFDKV+RIEA S+N +MYM LDV +E+Y M++GD F M LA TL
Sbjct: 5 LFKDKFKVTRLDPDGKKFDKVTRIEATSEN-EMYMQLDVATEVYAMKLGDTFNMVLALTL 63
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAYETTTQSIHYYF 122
NLDG+ D GYYT RKTLAD Y+YIMHGKL+KI E S K +T I+ F
Sbjct: 64 NLDGSTDAGYYTQAGRKTLADDYDYIMHGKLYKIS-EDSTKDSNGNSSTKVEIYASF 119
>gi|449462830|ref|XP_004149143.1| PREDICTED: probable DNA-directed RNA polymerases I, II, and III
subunit RPABC3-like [Cucumis sativus]
gi|449509097|ref|XP_004163492.1| PREDICTED: probable DNA-directed RNA polymerases I, II, and III
subunit RPABC3-like [Cucumis sativus]
Length = 146
Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 80/106 (75%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LF DIF V+ ++PDGKK+DKVSRIEA S+ M+MLLDVN+E+YP+ G+K M L+ T
Sbjct: 4 LLFNDIFKVKCVNPDGKKYDKVSRIEARSEKLSMHMLLDVNTEIYPIDEGEKLLMVLSPT 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
LN DG+P T Y +K+LADK+EYIMHGK +K+ DEGSG LK
Sbjct: 64 LNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTYKLSDEGSGSDLKV 109
>gi|168010644|ref|XP_001758014.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690891|gb|EDQ77256.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 147
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 81/104 (77%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M + +LFEDIF + ++DPDGKKFDKVSRI AHS+ DM +LLDVN ++YP+ G+KFT+A
Sbjct: 1 MGDTLLFEDIFTISQLDPDGKKFDKVSRIVAHSEQFDMDVLLDVNIDIYPLHKGEKFTLA 60
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGS 104
LA TL+LDGT D G + RK+LADKYEY+M+GK++K D S
Sbjct: 61 LASTLSLDGTMDDGTFDQSNRKSLADKYEYVMYGKVYKYADTES 104
>gi|302788262|ref|XP_002975900.1| hypothetical protein SELMODRAFT_104121 [Selaginella moellendorffii]
gi|300156176|gb|EFJ22805.1| hypothetical protein SELMODRAFT_104121 [Selaginella moellendorffii]
Length = 147
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 84/110 (76%), Gaps = 1/110 (0%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDK-VSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTM 59
M+ ++LFEDIF + ID DGKKFDK VSRIEA S+ DM ++LDVN ++YP+ DKFT+
Sbjct: 1 MAELLLFEDIFTITGIDTDGKKFDKAVSRIEARSEQFDMQLVLDVNIDVYPIARTDKFTL 60
Query: 60 ALAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLK 109
AL+ TL LDGTPD G + +K+LADKYEY+M+GKL+K D+ SG ++K
Sbjct: 61 ALSSTLRLDGTPDDGVFDQSRKKSLADKYEYVMYGKLYKYDDDESGGAIK 110
>gi|225434044|ref|XP_002274208.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 [Vitis vinifera]
gi|296084254|emb|CBI24642.3| unnamed protein product [Vitis vinifera]
Length = 145
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 80/105 (76%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
F+DIFVV+ DP GKKFDKVSRIEA S+ DM+M LDVN E YP++ G+KF M LA TL
Sbjct: 5 FFDDIFVVDGQDPGGKKFDKVSRIEASSEQYDMFMQLDVNIEAYPIQAGEKFRMVLAPTL 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
+LDG T Y+T G +K+LADK++Y+M+G ++K+ +EGSG +K
Sbjct: 65 HLDGADVTDYFTQGEQKSLADKFDYVMYGIIYKVSNEGSGPDVKG 109
>gi|302811134|ref|XP_002987257.1| hypothetical protein SELMODRAFT_125701 [Selaginella moellendorffii]
gi|300145154|gb|EFJ11833.1| hypothetical protein SELMODRAFT_125701 [Selaginella moellendorffii]
Length = 145
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 84/110 (76%), Gaps = 2/110 (1%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M+N++L EDIF V IDPDGKKFDK +IEAHS+ DM++LLDVN ++YP+ +KFTMA
Sbjct: 1 MANLLL-EDIFRVTDIDPDGKKFDK-GKIEAHSEQFDMHLLLDVNCDVYPLHRDEKFTMA 58
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
LA TL+LDGTPD G +++LAD+Y+Y+M+GKL+K D+ S +LK
Sbjct: 59 LAPTLSLDGTPDEGVLDQSGKRSLADRYDYVMYGKLYKYSDDHSTGALKV 108
>gi|302789303|ref|XP_002976420.1| hypothetical protein SELMODRAFT_105067 [Selaginella moellendorffii]
gi|300156050|gb|EFJ22680.1| hypothetical protein SELMODRAFT_105067 [Selaginella moellendorffii]
Length = 145
Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 80/106 (75%), Gaps = 1/106 (0%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+L EDIF V IDPDGKKFDK +IEAHS+ DM++LLDVN ++YP+ +KFTMALA T
Sbjct: 4 LLLEDIFRVTDIDPDGKKFDK-GKIEAHSEQFDMHLLLDVNCDVYPLHRDEKFTMALAPT 62
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
L+LDGTPD G +++LAD+Y+Y+M+GKL+K D+ S +LK
Sbjct: 63 LSLDGTPDEGVLDQSGKRSLADRYDYVMYGKLYKYSDDHSTGALKV 108
>gi|320164301|gb|EFW41200.1| Rpb8-PA [Capsaspora owczarzaki ATCC 30864]
Length = 145
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 75/102 (73%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ I+ DGKKFD+VSR+E S+N DM ++LD+NS++Y + + +KF++ LA T
Sbjct: 7 VLFEDIFEVKDINRDGKKFDRVSRLECQSENYDMALVLDINSQIYQLELSEKFSLMLAST 66
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGK 106
LN +G PD G++ + T AD +EY+MHGK+++ +E K
Sbjct: 67 LNENGVPDDGHFIRSTKNTRADNFEYVMHGKIYRCDEEDRDK 108
>gi|307110961|gb|EFN59196.1| hypothetical protein CHLNCDRAFT_33921 [Chlorella variabilis]
Length = 149
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS + EDIF V++ DPDGKKFDKVSRI+A S +M ++LD+N +++P+ VGDK +
Sbjct: 1 MSKSQVLEDIFEVQEKDPDGKKFDKVSRIKARSDLYEMDLVLDINVDVFPVEVGDKLVIC 60
Query: 61 LAHTLNLDGTPDTGYYTP---GARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
LA+TLNLDGTP + + ++TL D ++Y+MHGK+FK D S LKA
Sbjct: 61 LANTLNLDGTPSSATFDASFVSGKRTLMDNFDYVMHGKVFKFKDNSSSGQLKA 113
>gi|328771615|gb|EGF81655.1| hypothetical protein BATDEDRAFT_10541, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 151
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 78/115 (67%), Gaps = 14/115 (12%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LF+DIF + IDP GKKFD+VSRI A S+N DM + LD+N+E+YP+R DKFT+ALA TL
Sbjct: 1 LFQDIFEITDIDPHGKKFDRVSRIVATSENIDMGVTLDINTEIYPLRPSDKFTLALASTL 60
Query: 66 NLDGTP----------DTGYYTPGA----RKTLADKYEYIMHGKLFKIGDEGSGK 106
LDG P D + TP + +K+LAD Y+Y+M+GK++K DEG K
Sbjct: 61 ALDGNPVDTSKKQPWRDPSFATPSSGTTGKKSLADDYDYVMYGKVYKYEDEGGAK 115
>gi|195015856|ref|XP_001984289.1| GH15097 [Drosophila grimshawi]
gi|195128897|ref|XP_002008896.1| GI13746 [Drosophila mojavensis]
gi|195379776|ref|XP_002048652.1| GJ14092 [Drosophila virilis]
gi|193897771|gb|EDV96637.1| GH15097 [Drosophila grimshawi]
gi|193920505|gb|EDW19372.1| GI13746 [Drosophila mojavensis]
gi|194155810|gb|EDW70994.1| GJ14092 [Drosophila virilis]
Length = 149
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 80/111 (72%), Gaps = 4/111 (3%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ +DP+GKKFD+VSR+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 4 VLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARK-TLADKYEYIMHGKLFKI-GDEGSGKS--LKAY 111
L DG PD+G Y P + T AD +EY+M+GK+++I GDE +S L AY
Sbjct: 64 LREDGCPDSGEYNPMEHEGTRADSFEYVMYGKIYRIEGDEAHNESSRLSAY 114
>gi|195427231|ref|XP_002061681.1| GK17059 [Drosophila willistoni]
gi|194157766|gb|EDW72667.1| GK17059 [Drosophila willistoni]
Length = 149
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 80/111 (72%), Gaps = 4/111 (3%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
V+FEDIF V+ +DP+GKKFD+VSR+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 4 VIFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARK-TLADKYEYIMHGKLFKI-GDEGSGKS--LKAY 111
L DG PD+G Y P + T AD +EY+M+GK+++I GDE +S L AY
Sbjct: 64 LREDGCPDSGEYNPMEHEGTRADSFEYVMYGKIYRIEGDEAHNESSRLSAY 114
>gi|21358365|ref|NP_649352.1| Rpb8 [Drosophila melanogaster]
gi|125978971|ref|XP_001353518.1| GA10862 [Drosophila pseudoobscura pseudoobscura]
gi|194875877|ref|XP_001973676.1| GG16218 [Drosophila erecta]
gi|195160970|ref|XP_002021344.1| GL24857 [Drosophila persimilis]
gi|195348643|ref|XP_002040857.1| GM22401 [Drosophila sechellia]
gi|195476786|ref|XP_002086242.1| GE23031 [Drosophila yakuba]
gi|195495435|ref|XP_002095266.1| GE19787 [Drosophila yakuba]
gi|195592244|ref|XP_002085845.1| GD14989 [Drosophila simulans]
gi|7296484|gb|AAF51770.1| Rpb8 [Drosophila melanogaster]
gi|16768368|gb|AAL28403.1| GM03174p [Drosophila melanogaster]
gi|54642281|gb|EAL31030.1| GA10862 [Drosophila pseudoobscura pseudoobscura]
gi|190655459|gb|EDV52702.1| GG16218 [Drosophila erecta]
gi|194118457|gb|EDW40500.1| GL24857 [Drosophila persimilis]
gi|194122367|gb|EDW44410.1| GM22401 [Drosophila sechellia]
gi|194181367|gb|EDW94978.1| GE19787 [Drosophila yakuba]
gi|194186032|gb|EDW99643.1| GE23031 [Drosophila yakuba]
gi|194197854|gb|EDX11430.1| GD14989 [Drosophila simulans]
gi|220942882|gb|ACL83984.1| Rpb8-PA [synthetic construct]
gi|220952982|gb|ACL89034.1| Rpb8-PA [synthetic construct]
Length = 149
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 80/111 (72%), Gaps = 4/111 (3%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ +DP+GKKFD+VSR+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 4 VLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARK-TLADKYEYIMHGKLFKI-GDEGSGKS--LKAY 111
L DG PD+G Y P + T AD +EY+M+GK+++I GDE ++ L AY
Sbjct: 64 LREDGCPDSGEYNPMEHEGTRADSFEYVMYGKIYRIEGDEAHNEASRLSAY 114
>gi|167537741|ref|XP_001750538.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163770959|gb|EDQ84634.1| predicted protein [Monosiga brevicollis MX1]
Length = 137
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 83/127 (65%), Gaps = 2/127 (1%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ VLFED+F V DP GK+FD+VSR+ + ++ ++LD+N++LYP+ + D+FT+
Sbjct: 1 MASTVLFEDVFTVRDKDPHGKRFDRVSRVICEGMSFNIELILDLNTQLYPVDLNDRFTLC 60
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAYETTTQSIHY 120
LA TL++D PD GYY + AD ++Y+MHG +++I D +G+ L Y ++ S+
Sbjct: 61 LASTLSMDDEPDDGYYNQNRNASRADNFDYVMHGTIYRIEDTDNGQQL--YVESSASVSI 118
Query: 121 YFIWACV 127
+ C+
Sbjct: 119 CMLPPCL 125
>gi|194747822|ref|XP_001956349.1| GF25165 [Drosophila ananassae]
gi|190623631|gb|EDV39155.1| GF25165 [Drosophila ananassae]
Length = 149
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 80/111 (72%), Gaps = 4/111 (3%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ +DP+GKKFD+VSR+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 4 VLFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARK-TLADKYEYIMHGKLFKI-GDEGSGKS--LKAY 111
L DG PD+G Y P + T AD +EY+M+GK+++I GDE ++ L AY
Sbjct: 64 LREDGCPDSGEYNPLEHEGTRADSFEYVMYGKIYRIEGDEAHNEASRLSAY 114
>gi|405969389|gb|EKC34363.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Crassostrea gigas]
Length = 111
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 75/102 (73%), Gaps = 1/102 (0%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN+++YP+ +GDKF M LA T
Sbjct: 4 VLFEDIFDVKDIDPEGKKFDRVSRLFCESESFKMDLILDVNTQIYPVDLGDKFRMVLAKT 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKIGDEGSG 105
L DGTPD G Y P + AD +EY+MHGK+++I + +G
Sbjct: 64 LREDGTPDDGEYNPTDTGPSRADSFEYVMHGKVYRIEGDDTG 105
>gi|348523077|ref|XP_003449050.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Oreochromis niloticus]
Length = 150
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 82/112 (73%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDPDGKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPDGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DGTPD G Y P R + AD+++Y+M+GK++KI GDE S ++ L AY
Sbjct: 64 LYEDGTPDDGEYNPQDDRPSRADQFDYVMYGKVYKIEGDETSTEAATRLSAY 115
>gi|47220948|emb|CAG03481.1| unnamed protein product [Tetraodon nigroviridis]
Length = 150
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 82/112 (73%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDPDGKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPDGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DGTPD G Y P R + AD+++Y+M+GK++KI GDE S ++ L AY
Sbjct: 64 LYEDGTPDDGEYNPTDDRPSRADQFDYVMYGKVYKIEGDETSTEAATRLSAY 115
>gi|410921710|ref|XP_003974326.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Takifugu rubripes]
Length = 150
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 82/112 (73%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDPDGKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPDGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DGTPD G Y P R + AD+++Y+M+GK++KI GDE S ++ L AY
Sbjct: 64 LYEDGTPDDGEYNPTDDRPSRADQFDYVMYGKVYKIEGDETSTEAATRLSAY 115
>gi|224135367|ref|XP_002327200.1| predicted protein [Populus trichocarpa]
gi|222835570|gb|EEE74005.1| predicted protein [Populus trichocarpa]
Length = 138
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 75/103 (72%), Gaps = 3/103 (2%)
Query: 8 EDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNL 67
EDIF+V + GK FDKV+RIEA S+ +++M LDVN+E+YP++ +++ + L TL+
Sbjct: 2 EDIFIVGSV---GKNFDKVTRIEARSERLELFMQLDVNTEVYPIKQEERYAVKLTTTLDP 58
Query: 68 DGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
DGTPDT YYTP ++AD + YIMHGKL+KI DEGSG + K
Sbjct: 59 DGTPDTAYYTPIKPGSIADNFYYIMHGKLYKILDEGSGANHKV 101
>gi|308322303|gb|ADO28289.1| DNA-directed RNA polymerases i II and III subunit rpabc3 [Ictalurus
furcatus]
Length = 150
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 82/112 (73%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDPDGKKFD+VSR+ S++ M ++LDVN+++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPDGKKFDRVSRLHCESESFKMDLILDVNTQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DGTPD G Y P R + AD+++Y M+GK++KI GDE S ++ L AY
Sbjct: 64 LYEDGTPDDGEYNPTDDRPSRADQFDYAMYGKVYKIEGDETSTEAATRLSAY 115
>gi|62955177|ref|NP_001017600.1| uncharacterized protein LOC550263 [Danio rerio]
gi|62204372|gb|AAH92853.1| Zgc:110289 [Danio rerio]
gi|182890118|gb|AAI64285.1| Zgc:110289 protein [Danio rerio]
Length = 150
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 82/112 (73%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDPDGKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPDGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DGTPD G Y P R + AD+++Y+M+GK+++I GDE S ++ L AY
Sbjct: 64 LYEDGTPDDGEYNPQDDRPSRADQFDYVMYGKVYRIEGDETSTEAATRLSAY 115
>gi|340375556|ref|XP_003386300.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like isoform 1 [Amphimedon queenslandica]
Length = 149
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 81/111 (72%), Gaps = 4/111 (3%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDPDGKKF++VSR+ S++ M ++LDVN++LYP+ +GDKF + L T
Sbjct: 4 ILFEDIFDVKDIDPDGKKFERVSRLFCESESFKMDLILDVNTQLYPVSLGDKFRLLLTTT 63
Query: 65 LNLDGTPDTG-YYTPGARKTLADKYEYIMHGKLFKI-GDEGSGKS--LKAY 111
L DG PD G + T +LAD +EY+M+GK+++I G+EG+G S L AY
Sbjct: 64 LREDGLPDDGDFLTTDGAPSLADAFEYVMYGKIYRIEGNEGAGDSGRLSAY 114
>gi|332375755|gb|AEE63018.1| unknown [Dendroctonus ponderosae]
Length = 152
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 74/104 (71%), Gaps = 4/104 (3%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 4 VLFEDIFNVKDIDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARKT---LADKYEYIMHGKLFKI-GDEGS 104
L DG PD+G + P T AD +EY+M GK+++I GDE S
Sbjct: 64 LREDGYPDSGDWNPQGLDTEGSRADSFEYVMSGKVYRIEGDEAS 107
>gi|291230072|ref|XP_002734993.1| PREDICTED: RNA polymerase II, polypeptide H-like [Saccoglossus
kowalevskii]
Length = 151
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/101 (54%), Positives = 75/101 (74%), Gaps = 3/101 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN++LYP+ + DKF + LA T
Sbjct: 4 VLFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMELILDVNTQLYPVELADKFRLVLAST 63
Query: 65 LNLDGTPDTGYYTP--GARKTLADKYEYIMHGKLFKI-GDE 102
L DG PD G YTP + AD++EY+M+GK++KI GDE
Sbjct: 64 LREDGYPDDGEYTPLSDGVPSRADQFEYVMYGKVYKIEGDE 104
>gi|432854504|ref|XP_004067933.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like isoform 1 [Oryzias latipes]
gi|432854506|ref|XP_004067934.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like isoform 2 [Oryzias latipes]
gi|432854508|ref|XP_004067935.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like isoform 3 [Oryzias latipes]
Length = 150
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 82/112 (73%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDPDGKKFD+VSR+ S++ M ++LDVN+++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPDGKKFDRVSRLHCESESFKMDLILDVNTQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DGTPD G Y P R + A +++Y+M+GK++KI GDE S ++ L AY
Sbjct: 64 LYEDGTPDDGEYNPQDDRPSRAAQFDYVMYGKVYKIEGDETSTEAATRLSAY 115
>gi|91087535|ref|XP_970133.1| PREDICTED: similar to Rpb8 CG11246-PA [Tribolium castaneum]
gi|270009448|gb|EFA05896.1| hypothetical protein TcasGA2_TC008708 [Tribolium castaneum]
Length = 152
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 75/104 (72%), Gaps = 4/104 (3%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 4 VLFEDIFNVKDIDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARKT---LADKYEYIMHGKLFKI-GDEGS 104
L DG PD+G + P +T AD +EY+M GK+++I GDE +
Sbjct: 64 LREDGYPDSGDWNPQGLETEGSRADSFEYVMSGKVYRIEGDEAA 107
>gi|14193247|gb|AAK55847.1|AF266463_1 RNA polymerase subunit [Manihot esculenta]
Length = 96
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/60 (86%), Positives = 56/60 (93%)
Query: 51 MRVGDKFTMALAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
M VGDKFTMALAHTLNLDGTPDTGYY GARKTLADKYEYIMHGKL+KI +EGSGK++KA
Sbjct: 1 MAVGDKFTMALAHTLNLDGTPDTGYYIQGARKTLADKYEYIMHGKLYKISEEGSGKAVKA 60
>gi|156381039|ref|XP_001632074.1| predicted protein [Nematostella vectensis]
gi|156219124|gb|EDO40011.1| predicted protein [Nematostella vectensis]
Length = 148
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 78/110 (70%), Gaps = 3/110 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LD+NS++YP+ +GDKF + LA T
Sbjct: 4 VLFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDINSQVYPVELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKI-GDEG--SGKSLKAY 111
L DGTPD + + AD++EY+M+GK+++I GDEG L AY
Sbjct: 64 LKEDGTPDDEFNPVDTTPSRADQFEYVMYGKVYRIEGDEGPDPASRLAAY 113
>gi|225706382|gb|ACO09037.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
[Osmerus mordax]
Length = 150
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 81/112 (72%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDI V+ IDPDGKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDILDVKDIDPDGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DGTPD G Y P R + AD+++Y+M+GK++KI GDE S ++ L AY
Sbjct: 64 LYEDGTPDDGEYNPQDDRPSRADQFDYVMYGKVYKIEGDETSTEAATRLSAY 115
>gi|226442642|ref|NP_001140124.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Salmo
salar]
gi|221219928|gb|ACM08625.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Salmo
salar]
Length = 150
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 81/112 (72%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDPDG KFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPDGMKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DGTPD G Y P R + AD+++Y+M+GK++KI GDE S ++ L AY
Sbjct: 64 LYEDGTPDDGEYNPQDDRPSRADQFDYVMYGKVYKIEGDETSTEAATRLSAY 115
>gi|318068052|ref|NP_001187576.1| DNA-directed RNA polymerases i II and III subunit rpabc3 [Ictalurus
punctatus]
gi|308323405|gb|ADO28839.1| DNA-directed RNA polymerases i II and III subunit rpabc3 [Ictalurus
punctatus]
Length = 150
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 81/112 (72%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDPDGKKFD+VSR+ S++ M ++LDVN+++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPDGKKFDRVSRLHCESESFKMDLILDVNTQIYPVELGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DGT D G Y P R + AD+++Y M+GK++KI GDE S ++ L AY
Sbjct: 64 LYEDGTSDDGEYNPTDDRPSRADQFDYAMYGKVYKIEGDETSTEAATRLSAY 115
>gi|159483485|ref|XP_001699791.1| DNA-directed RNA polymerase II, 16.5 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158281733|gb|EDP07487.1| DNA-directed RNA polymerase II, 16.5 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 145
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S +LFED+F V DPDGKKFD VSR HS +M + +D+N+EL+P++ DKF++ L
Sbjct: 4 SQPILFEDVFDVVDKDPDGKKFDNVSRFICHSDLYEMDLHIDINTELFPLQRNDKFSLVL 63
Query: 62 AHTLNLDGTPDTGYY-TPGARKTLADKYEYIMHGKLFKIGDEG 103
A T+NLD TP + Y PG R+TL D Y+Y+MHGK+FK D
Sbjct: 64 AWTINLDATPGSEKYDAPGGRRTLMDNYDYVMHGKVFKYKDNN 106
>gi|297606426|ref|NP_001058461.2| Os06g0697400 [Oryza sativa Japonica Group]
gi|255677357|dbj|BAF20375.2| Os06g0697400 [Oryza sativa Japonica Group]
Length = 82
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 61/75 (81%), Gaps = 1/75 (1%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLF 97
MYM LDV +E+YPMR GD+FTM LA TLNLDGTPDTG+YT RKTLADK++Y+MHGKL+
Sbjct: 1 MYMQLDVATEVYPMRAGDRFTMVLAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLY 60
Query: 98 KIG-DEGSGKSLKAY 111
KI D SG++ K Y
Sbjct: 61 KISEDSSSGQATKVY 75
>gi|229365820|gb|ACQ57890.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Anoplopoma fimbria]
Length = 150
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 81/112 (72%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDPDGKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPDGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L D TPD G Y P R + AD+++Y+M+GK++KI GDE S ++ L AY
Sbjct: 64 LYEDRTPDDGEYNPQDDRPSRADQFDYVMYGKVYKIEGDETSTEAATRLSAY 115
>gi|428186268|gb|EKX55118.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Guillardia theta CCMP2712]
Length = 142
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 68/95 (71%)
Query: 4 IVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAH 63
+ L ED+F V+ ID DGKKFD VSRI+A SQ + + +D+N+E+YPM++ D+F+MAL+
Sbjct: 2 VFLLEDLFDVKDIDQDGKKFDNVSRIQALSQTYGLELTIDINTEIYPMKIFDRFSMALST 61
Query: 64 TLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFK 98
L DG PD G Y +T AD +EY+MHGK+FK
Sbjct: 62 NLRKDGEPDEGVYDQSGVETFADDFEYVMHGKVFK 96
>gi|198432602|ref|XP_002122918.1| PREDICTED: similar to RNA polymerase II, polypeptide H [Ciona
intestinalis]
Length = 152
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 83/117 (70%), Gaps = 6/117 (5%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M+ +LFEDIF ++ +DP+GKKFD+VSR+ S++ M ++LD+N++LYP+ +GDKF +
Sbjct: 1 MATGLLFEDIFDIKDVDPEGKKFDRVSRLHCDSESFKMELILDINTQLYPVELGDKFRLV 60
Query: 61 LAHTLNLDGTPDTGYYTPGARK--TLADKYEYIMHGKLFKI-GDEGSG---KSLKAY 111
LA TL+ DGTP G + P K T AD++EY+M+GK+++I G+E G L AY
Sbjct: 61 LATTLSEDGTPADGEFNPLWEKNPTRADQFEYVMYGKVYRIEGEESVGDVASKLSAY 117
>gi|299116477|emb|CBN76194.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 144
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/95 (52%), Positives = 70/95 (73%), Gaps = 1/95 (1%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V K++PDGKKFD+V+R+E DM +LLD N ++YP++ G++ T +A T
Sbjct: 4 VLFEDIFEVGKLNPDGKKFDRVNRLECKGVTYDMDLLLDTNCDIYPVKEGERLTFVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFK 98
L+L G PD G Y P G +LADKYEY+MHG++++
Sbjct: 64 LDLSGKPDDGTYKPLGDEVSLADKYEYVMHGRVYR 98
>gi|224124016|ref|XP_002319223.1| predicted protein [Populus trichocarpa]
gi|118487468|gb|ABK95561.1| unknown [Populus trichocarpa]
gi|222857599|gb|EEE95146.1| predicted protein [Populus trichocarpa]
Length = 143
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 70/101 (69%)
Query: 9 DIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLD 68
D FV+EK++PDGKK+DKVSRI A S+ D+YM+LDV++E+YP+ ++ + L TLN D
Sbjct: 6 DFFVIEKLNPDGKKYDKVSRIVARSEKGDLYMVLDVHTEIYPIEEKSRYLVLLTETLNTD 65
Query: 69 GTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLK 109
GTP G + + DK+EY+ HGKL+KI EGSG K
Sbjct: 66 GTPVDPRNAQGKQPSKEDKFEYVTHGKLYKIDKEGSGADFK 106
>gi|383859891|ref|XP_003705425.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Megachile rotundata]
Length = 151
Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 78/113 (69%), Gaps = 6/113 (5%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 4 VLFEDIFNVKDIDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARK--TLADKYEYIMHGKLFKI-GDEGSGK---SLKAY 111
L DG PD G + ++ + AD +EY+M GK+++I GDE S + L AY
Sbjct: 64 LREDGYPDGGEWNATEQEGGSRADSFEYVMSGKVYRIEGDEASNEPSSRLSAY 116
>gi|225709858|gb|ACO10775.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Caligus
rogercresseyi]
Length = 150
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 79/105 (75%), Gaps = 2/105 (1%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LD+NS +YPM +GDKF + LA+T
Sbjct: 4 VLFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPMDLGDKFRLVLANT 63
Query: 65 LNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKLFKI-GDEGSGKS 107
L DG PD+G + P + + AD +E++M+GK+++I GDE S ++
Sbjct: 64 LREDGFPDSGEWNPTESGPSRADSFEHVMYGKIYRIEGDELSSET 108
>gi|348582696|ref|XP_003477112.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Cavia porcellus]
Length = 150
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 81/112 (72%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DGT D G Y P R + AD++EY+M+GK++KI GDE S ++ L AY
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYKIEGDETSTEAATRLSAY 115
>gi|356557116|ref|XP_003546864.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like [Glycine max]
Length = 145
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 69/95 (72%), Gaps = 8/95 (8%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LF DIF VEK+DPDGKK+DKVSRI A S+ CDMYMLLD+N+E+YPM ++F MAL+ +
Sbjct: 4 LLFNDIFKVEKVDPDGKKYDKVSRIVARSEKCDMYMLLDINTEIYPMGEKERFLMALSPS 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKI 99
L L+ T ++ DK+EYIMHG+L+ I
Sbjct: 64 LVLN--------TKDGSVSIQDKFEYIMHGRLYNI 90
>gi|324529588|gb|ADY49022.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Ascaris
suum]
Length = 149
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 79/116 (68%), Gaps = 3/116 (2%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS +LF+D+F+V+ +DPDGKKFD+VSR+ S++ M ++LDVN++LYPM + DKF +
Sbjct: 1 MSTGILFDDMFLVKDVDPDGKKFDRVSRLFCDSESFKMELILDVNTQLYPMHLNDKFRLM 60
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKI-GDEGSGKS--LKAYET 113
LA TL DG PD Y P D +EY+M GK+++I G+E S +S L AY +
Sbjct: 61 LATTLRDDGLPDEPEYDPLVSYPRMDPFEYVMFGKVYRIEGEESSAESNTLAAYAS 116
>gi|442762435|gb|JAA73376.1| Putative rna polymerase subunit 8, partial [Ixodes ricinus]
Length = 153
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 81/114 (71%), Gaps = 4/114 (3%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S + LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN +LYP+ +GDKF + +
Sbjct: 5 SGLFLFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQLYPVDLGDKFRLVI 64
Query: 62 AHTLNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKLFKI-GDEGSGKS--LKAY 111
A TL DG PD G Y P + +D +EY+M+GK+++I GD+ SG++ L AY
Sbjct: 65 ATTLREDGYPDDGEYNPADTGPSRSDSFEYVMYGKIYRIEGDDISGETTRLAAY 118
>gi|327285867|ref|XP_003227653.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Anolis carolinensis]
Length = 150
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 81/112 (72%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNVQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DGT D G Y P R + AD++EY+M+GK+++I GDE S ++ L AY
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAY 115
>gi|225711886|gb|ACO11789.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Lepeophtheirus salmonis]
gi|290462623|gb|ADD24359.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Lepeophtheirus salmonis]
gi|290561607|gb|ADD38203.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Lepeophtheirus salmonis]
Length = 150
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 82/112 (73%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LD+NS +YP+ +GDKF + LA+T
Sbjct: 4 VLFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDINSWIYPIELGDKFRLVLANT 63
Query: 65 LNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DG PD+G + P + + AD +E++M+GK+++I GDE S ++ L AY
Sbjct: 64 LREDGFPDSGEWNPTESGPSRADSFEHVMYGKIYRIEGDEISSETSGRLAAY 115
>gi|321477401|gb|EFX88360.1| hypothetical protein DAPPUDRAFT_191687 [Daphnia pulex]
Length = 151
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 77/115 (66%), Gaps = 6/115 (5%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LD+NS L+PM +GDKF + LA T
Sbjct: 4 VLFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDINSWLFPMDLGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPG--ARKTLADKYEYIMHGKLFKI-GDEGS---GKSLKAYET 113
L DG D G + P + AD +EY+M GK+++I GDEGS L AY +
Sbjct: 64 LREDGCSDAGEWAPQDLGIPSRADSFEYVMFGKVYRIEGDEGSTEPSSRLSAYAS 118
>gi|355712738|gb|AES04449.1| polymerase II polypeptide H [Mustela putorius furo]
Length = 148
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 81/112 (72%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 3 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 62
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DGT D G Y P R + AD++EY+M+GK+++I GDE S ++ L AY
Sbjct: 63 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAY 114
>gi|226372734|gb|ACO51992.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Rana
catesbeiana]
Length = 150
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 82/112 (73%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+G+KFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A+T
Sbjct: 4 ILFEDIFDVKDIDPEGRKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIANT 63
Query: 65 LNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DGT D G Y P R + AD++EY+M+GK+++I GDE S ++ L AY
Sbjct: 64 LYEDGTLDGGEYNPNDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAY 115
>gi|297286221|ref|XP_002802930.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Macaca mulatta]
Length = 150
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 81/112 (72%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DGT D G Y P R + AD++EY+M+GK+++I GDE S ++ L AY
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAY 115
>gi|14589953|ref|NP_006223.2| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Homo
sapiens]
gi|21704118|ref|NP_663607.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Mus
musculus]
gi|198278428|ref|NP_001128261.1| polymerase (RNA) II (DNA directed) polypeptide H [Rattus
norvegicus]
gi|300796879|ref|NP_001178994.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Bos
taurus]
gi|343183425|ref|NP_001230270.1| polymerase (RNA) II (DNA directed) polypeptide H [Sus scrofa]
gi|50752375|ref|XP_422761.1| PREDICTED: uncharacterized protein LOC424954 isoform 2 [Gallus
gallus]
gi|57109920|ref|XP_535826.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 [Canis lupus familiaris]
gi|126314756|ref|XP_001363950.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Monodelphis domestica]
gi|149442170|ref|XP_001511382.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Ornithorhynchus anatinus]
gi|149731172|ref|XP_001498295.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Equus caballus]
gi|291400327|ref|XP_002716520.1| PREDICTED: RNA polymerase II, polypeptide H [Oryctolagus cuniculus]
gi|296224742|ref|XP_002758180.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 [Callithrix jacchus]
gi|297672670|ref|XP_002814411.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 [Pongo abelii]
gi|301759751|ref|XP_002915723.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Ailuropoda melanoleuca]
gi|344282361|ref|XP_003412942.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Loxodonta africana]
gi|354495054|ref|XP_003509647.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Cricetulus griseus]
gi|392352162|ref|XP_003751131.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Rattus norvegicus]
gi|395861281|ref|XP_003802918.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 [Otolemur garnettii]
gi|397470038|ref|XP_003806643.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 isoform 1 [Pan paniscus]
gi|397470040|ref|XP_003806644.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 isoform 2 [Pan paniscus]
gi|402860745|ref|XP_003894782.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 [Papio anubis]
gi|410970847|ref|XP_003991888.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 [Felis catus]
gi|426217790|ref|XP_004003135.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 [Ovis aries]
gi|20178325|sp|P52434.4|RPAB3_HUMAN RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC3; Short=RNA polymerases I, II, and III subunit
ABC3; AltName: Full=DNA-directed RNA polymerase II
subunit H; AltName: Full=DNA-directed RNA polymerases I,
II, and III 17.1 kDa polypeptide; AltName: Full=RPB17;
AltName: Full=RPB8 homolog; Short=hRPB8
gi|73920762|sp|Q923G2.3|RPAB3_MOUSE RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC3; Short=RNA polymerases I, II, and III subunit
ABC3; AltName: Full=DNA-directed RNA polymerase II
subunit H; AltName: Full=RPB17; AltName: Full=RPB8
homolog
gi|99032143|pdb|2F3I|A Chain A, Solution Structure Of A Subunit Of Rna Polymerase Ii
gi|854177|emb|CAA89060.1| RNA polymerase II subunit hRPB17 [Homo sapiens]
gi|8052523|emb|CAB92189.1| RPB8 [Homo sapiens]
gi|12653893|gb|AAH00739.1| Polymerase (RNA) II (DNA directed) polypeptide H [Homo sapiens]
gi|12805649|gb|AAH02306.1| Polymerase (RNA) II (DNA directed) polypeptide H [Mus musculus]
gi|62027575|gb|AAH92087.1| Polr2h protein [Mus musculus]
gi|74138694|dbj|BAE27163.1| unnamed protein product [Mus musculus]
gi|74179848|dbj|BAE36495.1| unnamed protein product [Mus musculus]
gi|90077816|dbj|BAE88588.1| unnamed protein product [Macaca fascicularis]
gi|116138785|gb|AAI25639.1| Polymerase (RNA) II (DNA directed) polypeptide H [Mus musculus]
gi|116138937|gb|AAI25613.1| Polymerase (RNA) II (DNA directed) polypeptide H [Mus musculus]
gi|119598653|gb|EAW78247.1| polymerase (RNA) II (DNA directed) polypeptide H, isoform CRA_b
[Homo sapiens]
gi|148665175|gb|EDK97591.1| polymerase (RNA) II (DNA directed) polypeptide H, isoform CRA_a
[Mus musculus]
gi|149019874|gb|EDL78022.1| rCG36803, isoform CRA_a [Rattus norvegicus]
gi|149019875|gb|EDL78023.1| rCG36803, isoform CRA_a [Rattus norvegicus]
gi|167774183|gb|ABZ92526.1| polymerase (RNA) II (DNA directed) polypeptide H [synthetic
construct]
gi|208967086|dbj|BAG73557.1| polymerase (RNA) II (DNA directed) polypeptide H [synthetic
construct]
gi|281354044|gb|EFB29628.1| hypothetical protein PANDA_003739 [Ailuropoda melanoleuca]
gi|296491251|tpg|DAA33314.1| TPA: polymerase (RNA) II (DNA directed) polypeptide H [Bos taurus]
gi|344241676|gb|EGV97779.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Cricetulus griseus]
gi|355559814|gb|EHH16542.1| hypothetical protein EGK_11831 [Macaca mulatta]
gi|355746844|gb|EHH51458.1| hypothetical protein EGM_10827 [Macaca fascicularis]
gi|380784277|gb|AFE64014.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Macaca
mulatta]
gi|383414217|gb|AFH30322.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Macaca
mulatta]
gi|384943672|gb|AFI35441.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Macaca
mulatta]
gi|410212058|gb|JAA03248.1| polymerase (RNA) II (DNA directed) polypeptide H [Pan troglodytes]
gi|410247880|gb|JAA11907.1| polymerase (RNA) II (DNA directed) polypeptide H [Pan troglodytes]
gi|410292670|gb|JAA24935.1| polymerase (RNA) II (DNA directed) polypeptide H [Pan troglodytes]
gi|413966194|gb|AFW90178.1| DNA-directed RNA polymerase II polypeptide H [Ailuropoda
melanoleuca]
gi|413966196|gb|AFW90179.1| DNA-directed RNA polymerase II polypeptide H [Ailuropoda
melanoleuca]
gi|431838839|gb|ELK00768.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Pteropus alecto]
gi|440893514|gb|ELR46249.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Bos
grunniens mutus]
Length = 150
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 81/112 (72%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DGT D G Y P R + AD++EY+M+GK+++I GDE S ++ L AY
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAY 115
>gi|149019876|gb|EDL78024.1| rCG36803, isoform CRA_b [Rattus norvegicus]
Length = 112
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 78/105 (74%), Gaps = 2/105 (1%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS 107
L DGT D G Y P R + AD++EY+M+GK+++I GDE S ++
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEA 108
>gi|388518039|gb|AFK47081.1| unknown [Lotus japonicus]
Length = 138
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 75/110 (68%), Gaps = 9/110 (8%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+ F+DIF VE +DPDGKK+DKVSRIEA S+ DMYMLLDVN+E+YPM+ +KF MAL+ +
Sbjct: 4 IFFDDIFKVENLDPDGKKYDKVSRIEARSEKRDMYMLLDVNTEIYPMKENEKFLMALSPS 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKI-GDEGSGKSLKAYET 113
L L+ T + +K+EYIMHG+L+ I DE S ++ Y +
Sbjct: 64 LVLN--------TKDGSVPIHEKFEYIMHGRLYNITNDEKSQHEVEVYAS 105
>gi|410350391|gb|JAA41799.1| polymerase (RNA) II (DNA directed) polypeptide H [Pan troglodytes]
Length = 196
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 81/112 (72%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 50 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 109
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DGT D G Y P R + AD++EY+M+GK+++I GDE S ++ L AY
Sbjct: 110 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAY 161
>gi|403270066|ref|XP_003927019.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 isoform 1 [Saimiri boliviensis boliviensis]
Length = 196
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 81/112 (72%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 50 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 109
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DGT D G Y P R + AD++EY+M+GK+++I GDE S ++ L AY
Sbjct: 110 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAY 161
>gi|62859379|ref|NP_001016113.1| polymerase (RNA) II (DNA directed) polypeptide H [Xenopus
(Silurana) tropicalis]
Length = 150
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 81/112 (72%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+G+KFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGRKFDRVSRLHCESESFKMDLILDVNIQVYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DGT D G Y P R + AD++EYIM+GK+++I GDE S ++ L AY
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYIMYGKVYRIEGDETSTEAATRLSAY 115
>gi|340375558|ref|XP_003386301.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like isoform 2 [Amphimedon queenslandica]
Length = 150
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 80/112 (71%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDPDGKKF++VSR+ S++ M ++LDVN++LYP+ +GDKF + L T
Sbjct: 4 ILFEDIFDVKDIDPDGKKFERVSRLFCESESFKMDLILDVNTQLYPVSLGDKFRLLLTTT 63
Query: 65 LNLDGTPDTG-YYTPGAR-KTLADKYEYIMHGKLFKI-GDEGSGKS--LKAY 111
L DG PD G + T G + D +EY+M+GK+++I G+EG+G S L AY
Sbjct: 64 LREDGLPDDGDFLTTGTNWSRVTDAFEYVMYGKIYRIEGNEGAGDSGRLSAY 115
>gi|332214985|ref|XP_003256616.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 isoform 1 [Nomascus leucogenys]
gi|441633222|ref|XP_004089737.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 [Nomascus leucogenys]
gi|441633225|ref|XP_004089738.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 [Nomascus leucogenys]
Length = 229
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 81/112 (72%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 83 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 142
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DGT D G Y P R + AD++EY+M+GK+++I GDE S ++ L AY
Sbjct: 143 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAY 194
>gi|417408235|gb|JAA50681.1| Putative rna polymerase rpb8, partial [Desmodus rotundus]
Length = 160
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 81/112 (72%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 14 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 73
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DGT D G Y P R + AD++EY+M+GK+++I GDE S ++ L AY
Sbjct: 74 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAY 125
>gi|331226938|ref|XP_003326138.1| DNA-directed RNA polymerase II subunit H [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309305128|gb|EFP81719.1| DNA-directed RNA polymerase II subunit H [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 148
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 75/112 (66%), Gaps = 6/112 (5%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LF+D+F + +D DGKKFD+VSR+ A S N M ++LD N ELYP++VGD F +AL+ +
Sbjct: 6 LLFDDLFTITNVDKDGKKFDRVSRLNASSTNHSMTLVLDFNVELYPLKVGDSFALALSSS 65
Query: 65 LNLDGTPDTGYYTPGAR-----KTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
L +G D+G T R LAD+YEY+M+GKL+K D G+ S+ AY
Sbjct: 66 LTPEGEKDSGIETQSWRLEEGKGGLADEYEYVMYGKLYKF-DSGASDSVTAY 116
>gi|351709615|gb|EHB12534.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Heterocephalus glaber]
Length = 138
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 78/105 (74%), Gaps = 2/105 (1%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS 107
L DGT D G Y P R + AD++EY+M+GK+++I GDE S ++
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEA 108
>gi|148232948|ref|NP_001085470.1| polymerase (RNA) II (DNA directed) polypeptide H [Xenopus laevis]
gi|49117881|gb|AAH72811.1| MGC80152 protein [Xenopus laevis]
Length = 150
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 81/112 (72%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+G+KFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGRKFDRVSRLHCESESFKMDLILDVNIQVYPVDLGDKFRLVVAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DGT D G Y P R + AD++EYIM+GK+++I GDE S ++ L AY
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYIMYGKVYRIEGDETSTEAATRLSAY 115
>gi|440792757|gb|ELR13965.1| hypothetical protein ACA1_365330 [Acanthamoeba castellanii str.
Neff]
Length = 140
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 74/103 (71%), Gaps = 2/103 (1%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
FED F V+ IDP+GK FDKVSR+E S + DM +LLDVN+++YP+ +GDK T+ALA +L
Sbjct: 4 FFEDTFEVKNIDPEGKIFDKVSRLECSSVSYDMQLLLDVNTDIYPVELGDKLTVALAKSL 63
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFK-IGDEGSGKS 107
D D G + R +LAD+YEY+M+GK+FK + D+GS S
Sbjct: 64 T-DNEMDDGIFDQSGRASLADEYEYVMYGKVFKCLEDKGSKVS 105
>gi|225714988|gb|ACO13340.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Esox
lucius]
Length = 150
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 79/112 (70%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDPDG KFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPDGMKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DGTPD G Y P R + D+++Y+M+GK++KI DE S ++ L AY
Sbjct: 64 LYEDGTPDDGEYNPQDERPSRTDQFDYVMYGKVYKIESDETSTEAATRLSAY 115
>gi|119598652|gb|EAW78246.1| polymerase (RNA) II (DNA directed) polypeptide H, isoform CRA_a
[Homo sapiens]
Length = 154
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 81/112 (72%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DGT D G Y P R + AD++EY+M+GK+++I GDE S ++ L AY
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAY 115
>gi|356525614|ref|XP_003531419.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
rpabc3-like [Glycine max]
Length = 160
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 69/95 (72%), Gaps = 8/95 (8%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LF+DIF VEK+DPDGKK+DKVSRI A S+ CDM MLLDVN+E+YPM ++F MAL+ +
Sbjct: 4 LLFDDIFKVEKVDPDGKKYDKVSRIVARSEKCDMNMLLDVNTEIYPMGEKERFLMALSPS 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKI 99
L L+ T ++ DK+EYIMHG+L+ I
Sbjct: 64 LVLN--------TKDGSVSIQDKFEYIMHGRLYNI 90
>gi|328784260|ref|XP_003250422.1| PREDICTED: sodium/potassium-transporting ATPase subunit alpha [Apis
mellifera]
Length = 1034
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 6/113 (5%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 887 VLFEDIFNVKDIDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 946
Query: 65 LNLDGTPDTGYYTPGARK--TLADKYEYIMHGKLFKI-GDEGSGK---SLKAY 111
L DG PD G + ++ + AD +EY+M G +++I GDE S + L AY
Sbjct: 947 LREDGYPDGGEWNATEQEGGSRADSFEYVMSGMVYRIEGDEASNEPSSRLSAY 999
>gi|333449457|gb|AEF33414.1| DNA-directed RNA polymerases I/II/III subunit rpabc3 [Crassostrea
ariakensis]
Length = 149
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 73/102 (71%), Gaps = 1/102 (0%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN+++YP+ +GDKF M LA T
Sbjct: 4 VLFEDIFDVKDIDPEGKKFDRVSRLFLWSESFKMDLILDVNTQIYPVDLGDKFRMVLAKT 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKIGDEGSG 105
L DGTPD G Y P + AD +EY+M GK++ I + +G
Sbjct: 64 LREDGTPDDGEYNPTDTGPSRADSFEYVMPGKVYPIEGDDTG 105
>gi|340713851|ref|XP_003395448.1| PREDICTED: sodium/potassium-transporting ATPase subunit alpha-like
[Bombus terrestris]
Length = 1028
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 6/113 (5%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 881 VLFEDIFNVKDIDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 940
Query: 65 LNLDGTPDTGYYTPGARK--TLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DG PD G + ++ + AD +EY+M G +++I GDE S + L AY
Sbjct: 941 LREDGYPDGGEWNATEQEGGSRADSFEYVMSGMVYRIEGDEASNEPSSRLSAY 993
>gi|380024940|ref|XP_003696244.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Apis florea]
Length = 151
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 6/113 (5%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 4 VLFEDIFNVKDIDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARK--TLADKYEYIMHGKLFKI-GDEGSGK---SLKAY 111
L DG PD G + ++ + AD +EY+M G +++I GDE S + L AY
Sbjct: 64 LREDGYPDGGEWNATEQEGGSRADSFEYVMSGMVYRIEGDEASNEPSSRLSAY 116
>gi|196004676|ref|XP_002112205.1| hypothetical protein TRIADDRAFT_56007 [Trichoplax adhaerens]
gi|190586104|gb|EDV26172.1| hypothetical protein TRIADDRAFT_56007 [Trichoplax adhaerens]
Length = 147
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 75/107 (70%), Gaps = 7/107 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDPDGKKF +VSR+ S++ M ++LD+NS+LYP+ GDKF + LA T
Sbjct: 4 VLFEDIFDVKDIDPDGKKFHRVSRLICDSESFKMELILDINSQLYPVEDGDKFRLMLAST 63
Query: 65 LNLDGTPDTGYYTP----GARKTLADKYEYIMHGKLFKI-GDEGSGK 106
L DG D G Y P G+ K AD +EY+M+GK++++ GDE S K
Sbjct: 64 LREDGIADDGEYNPLGVNGSNK--ADNFEYVMYGKIYRLEGDEDSAK 108
>gi|1017823|gb|AAA91458.1| RNA polymerase II subunit [Homo sapiens]
Length = 150
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 80/112 (71%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+ KKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEAKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DGT D G Y P R + AD++EY+M+GK+++I GDE S ++ L AY
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAY 115
>gi|115698828|ref|XP_796332.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Strongylocentrotus purpuratus]
Length = 151
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 6/113 (5%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN++ YP+ +GDKF + LA T
Sbjct: 4 VLFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNTQQYPVDLGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTP--GARKTLADKYEYIMHGKLFKI-GDEG---SGKSLKAY 111
L DG PD YTP + + AD +EY+M GK+++I GDE + L AY
Sbjct: 64 LREDGFPDEPDYTPLDDGQPSRADSFEYVMFGKVYRIEGDESLTEAATKLSAY 116
>gi|393246580|gb|EJD54089.1| RNA polymerase I [Auricularia delicata TFB-10046 SS5]
Length = 145
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 81/116 (69%), Gaps = 4/116 (3%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ ++F+D+F ++++D GKKFD+VSR+ AHS N DM++ LD NSE++P+ FTMA
Sbjct: 1 MNSSIVFDDLFKIQEVDQGGKKFDRVSRLAAHSSNLDMHLTLDYNSEIFPLHQDQSFTMA 60
Query: 61 LAHTLNLDGTPD-TGYYTPGARKT--LADKYEYIMHGKLFKIGDEGSGKSLKAYET 113
LA +L G D + P R + L ++YEY+M+GK++K DEGSG+++ AY +
Sbjct: 61 LATSLGAGGADDEQNSWRPDGRGSGGLDNEYEYVMYGKVYKF-DEGSGENVTAYAS 115
>gi|242008804|ref|XP_002425189.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide,
putative [Pediculus humanus corporis]
gi|212508897|gb|EEB12451.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide,
putative [Pediculus humanus corporis]
Length = 150
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 80/115 (69%), Gaps = 11/115 (9%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+G+KFD+VSR+ S++ M ++LDVN+ LYPM +GDKF + LA T
Sbjct: 4 VLFEDIFNVKDIDPEGRKFDRVSRLHCESESFKMDLILDVNTWLYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTP----GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DG PD+G + P G+R AD +EY+M+G ++I GD+ S ++ L AY
Sbjct: 64 LREDGYPDSGEWNPLDNEGSR---ADSFEYVMYGLNYRIEGDDSSPETSSRLAAY 115
>gi|384245849|gb|EIE19341.1| hypothetical protein COCSUDRAFT_44692 [Coccomyxa subellipsoidea
C-169]
Length = 149
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 78/126 (61%), Gaps = 10/126 (7%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LF D+F V + DPDGK+FDKVSR HS M ++LD+N+++YP++VG++ + LA T+
Sbjct: 5 LFNDVFEVLEKDPDGKQFDKVSRFRCHSDLFGMGLMLDINTDIYPVKVGERLRLVLAPTI 64
Query: 66 NLDGTPDTGYYTPG---ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAYETTTQSIHYYF 122
NLD TP G Y +RKT D++EY+ +GK+FK D G +T T ++ Y
Sbjct: 65 NLDDTPTDGTYNAAMQSSRKTKMDEFEYVTYGKIFKYADAG-------VDTNTNTVQVYI 117
Query: 123 IWACVI 128
+ ++
Sbjct: 118 SFGGLL 123
>gi|350409622|ref|XP_003488796.1| PREDICTED: sodium/potassium-transporting ATPase subunit alpha-like
[Bombus impatiens]
Length = 1028
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 76/113 (67%), Gaps = 6/113 (5%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LD+N LYPM +GDKF + LA T
Sbjct: 881 VLFEDIFNVKDIDPEGKKFDRVSRLHCESESFKMDLILDINCWLYPMELGDKFRLVLATT 940
Query: 65 LNLDGTPDTGYYTPGARK--TLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DG PD G + ++ + AD +EY+M G +++I GDE S + L AY
Sbjct: 941 LREDGYPDGGEWNATEQEGGSRADSFEYVMSGMVYRIEGDEASNEPSSRLSAY 993
>gi|240849191|ref|NP_001155816.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Acyrthosiphon pisum]
gi|239790676|dbj|BAH71885.1| ACYPI009782 [Acyrthosiphon pisum]
Length = 154
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 79/116 (68%), Gaps = 10/116 (8%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M+ ++FEDIF V+ IDP+GK+FD+VSR+ S++ M ++LD+NS +YPM +GDKF +
Sbjct: 1 MAQGMVFEDIFNVKDIDPNGKQFDRVSRLHCESESFKMELILDINSWIYPMDLGDKFRLV 60
Query: 61 LAHTLNLDGTPDTGYYTP------GARKTLADKYEYIMHGKLFKI-GDEGSGKSLK 109
LA TL DG PD G + P G R AD +EY+M+GK+++I GD+ +S K
Sbjct: 61 LATTLREDGQPDAGDWNPIEMDQNGCR---ADSFEYVMYGKIYRIEGDDKVKESHK 113
>gi|348674017|gb|EGZ13836.1| hypothetical protein PHYSODRAFT_355025 [Phytophthora sojae]
Length = 142
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 70/99 (70%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFEDIF V +++PDGKKFDKV+R+ + ++ + LD+NSE+Y +R +KFT+AL TL
Sbjct: 5 LFEDIFEVRQLNPDGKKFDKVTRVVCKGVSYELELTLDINSEVYRLRQNEKFTLALVSTL 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGS 104
+L+G PD G + + TL D+Y+Y M+GK+F+ EG
Sbjct: 65 DLEGKPDDGMFNQSGKPTLLDRYDYGMYGKVFQYDHEGG 103
>gi|301108471|ref|XP_002903317.1| DNA-directed RNA polymerase I, II, and III subunit rpabc3, putative
[Phytophthora infestans T30-4]
gi|262097689|gb|EEY55741.1| DNA-directed RNA polymerase I, II, and III subunit rpabc3, putative
[Phytophthora infestans T30-4]
Length = 142
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 70/99 (70%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFEDIF V +++PDGKKFDKV+R+ + ++ + LD+NSE+Y +R +KFT+AL TL
Sbjct: 5 LFEDIFEVRQLNPDGKKFDKVTRVVCKGVSYELELTLDINSEVYRLRQNEKFTLALVSTL 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGS 104
+L+G PD G + + TL D+Y+Y M+GK+F+ EG
Sbjct: 65 DLEGKPDDGIFNQSGKPTLLDRYDYGMYGKVFQYDHEGG 103
>gi|156552268|ref|XP_001599582.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Nasonia vitripennis]
Length = 151
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 76/113 (67%), Gaps = 6/113 (5%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDPDGKKFD+V R+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 4 VLFEDIFNVKDIDPDGKKFDRVIRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARK--TLADKYEYIMHGKLFKI-GDEGSGK---SLKAY 111
L DG PD G + + + A+ +EY+M GK+++I GDE + + L AY
Sbjct: 64 LREDGYPDGGDWNAAEMEGGSRANSFEYVMSGKVYRIEGDEANNEPSSRLSAY 116
>gi|157107468|ref|XP_001649793.1| DNA-directed RNA polymerase subunit rpb8 [Aedes aegypti]
gi|108884079|gb|EAT48304.1| AAEL000677-PA [Aedes aegypti]
Length = 150
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 75/112 (66%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ +DP+GKKFD+ SR+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 4 ILFEDIFNVKDMDPEGKKFDRASRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGA-RKTLADKYEYIMHGKLFKI-GDEG---SGKSLKAY 111
L+ DGTP + Y + AD +EY+M GK+++I GD+ S L AY
Sbjct: 64 LHEDGTPASMEYNAAEIEGSRADSFEYVMFGKVYRIEGDDAQLESANRLSAY 115
>gi|260790939|ref|XP_002590498.1| hypothetical protein BRAFLDRAFT_59621 [Branchiostoma floridae]
gi|229275692|gb|EEN46509.1| hypothetical protein BRAFLDRAFT_59621 [Branchiostoma floridae]
Length = 162
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 75/112 (66%), Gaps = 14/112 (12%)
Query: 5 VLFEDIFVVEKIDPDGKKFDK------------VSRIEAHSQNCDMYMLLDVNSELYPMR 52
VLFEDIF V+ IDPDGKKFD+ +SR+ S++ M ++LDVN+++YP+
Sbjct: 4 VLFEDIFDVKDIDPDGKKFDRGEKFSFISQIVYLSRLHCESESFKMELILDVNTQVYPVD 63
Query: 53 VGDKFTMALAHTLNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKLFKI-GDE 102
+GDKF + LA TL DG PD G Y P + AD++EY+M+GK+++I GD+
Sbjct: 64 IGDKFRLVLASTLREDGAPDDGEYIPNDGTPSRADQFEYVMYGKIYRIEGDD 115
>gi|268574476|ref|XP_002642215.1| C. briggsae CBR-RPB-8 protein [Caenorhabditis briggsae]
gi|224493242|sp|A8XT81.1|RPAB3_CAEBR RecName: Full=Probable DNA-directed RNA polymerases I, II, and III
subunit RPABC3; Short=RNA polymerases I, II, and III
subunit ABC3; AltName: Full=RNA polymerase B subunit 8;
Short=RPB8
Length = 148
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 71/101 (70%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
++F+D+F V+ +DPDGKKFD+VSR +++ M +++D+NS++YP++ DKF + LA T
Sbjct: 4 IIFDDMFSVKSVDPDGKKFDRVSRYFCDAESFKMELIIDINSQIYPLKQNDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSG 105
L DG D G Y P A +YEY+M+GK++++ D+ SG
Sbjct: 64 LREDGLADEGEYDPKAEYPRIKQYEYVMYGKVYRLEDDDSG 104
>gi|170039405|ref|XP_001847525.1| DNA-directed RNA polymeraseI [Culex quinquefasciatus]
gi|170068116|ref|XP_001868741.1| DNA-directed RNA polymeraseI [Culex quinquefasciatus]
gi|167863002|gb|EDS26385.1| DNA-directed RNA polymeraseI [Culex quinquefasciatus]
gi|167864217|gb|EDS27600.1| DNA-directed RNA polymeraseI [Culex quinquefasciatus]
Length = 150
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 75/112 (66%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ +DP+GKKFD+ SR+ S++ M ++LD+NS LYPM +GDKF + LA T
Sbjct: 4 ILFEDIFNVKDMDPEGKKFDRSSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGA-RKTLADKYEYIMHGKLFKI-GDEG---SGKSLKAY 111
L+ DGTP + Y + AD +EY+M GK+++I GD+ S L AY
Sbjct: 64 LHEDGTPASMEYNAAEIEGSRADSFEYVMFGKVYRIEGDDAQTESANRLSAY 115
>gi|219125940|ref|XP_002183227.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405502|gb|EEC45445.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 149
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 74/112 (66%), Gaps = 3/112 (2%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
+ + LFEDIF + ++PDG KF++V+RI+A + +LLD+N E+Y +R DKFT+ L
Sbjct: 5 AKVTLFEDIFEITALNPDGYKFERVNRIQATGTTFECELLLDINCEIYTLRETDKFTLVL 64
Query: 62 AHTLNLDGTP-DTGYYTPG--ARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
A TL+LDG+P D Y P A +LAD YEY+MHG++F + + G + A
Sbjct: 65 ASTLHLDGSPADHFSYVPANSAEPSLADNYEYVMHGRVFDMSYQKDGTVVIA 116
>gi|384496019|gb|EIE86510.1| hypothetical protein RO3G_11221 [Rhizopus delemar RA 99-880]
Length = 155
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 75/114 (65%), Gaps = 10/114 (8%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LF+DIF ++ +DP GK+FD+VSR+ A S+N +M + LD NSE+YP+ G+KF+ LA +
Sbjct: 6 ILFQDIFDIKDLDPQGKRFDRVSRLIARSENYEMDLTLDFNSEIYPLNTGEKFSFVLASS 65
Query: 65 LNLDGTPDTG---------YYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLK 109
L+L+ + +TG PG R L+D+YEY+M GK++K D G + +
Sbjct: 66 LSLEASANTGGVEKRESWRERAPGERD-LSDEYEYVMFGKVYKFEDSNKGAAAQ 118
>gi|330796110|ref|XP_003286112.1| RNA polymerase II core subunit [Dictyostelium purpureum]
gi|325083931|gb|EGC37371.1| RNA polymerase II core subunit [Dictyostelium purpureum]
Length = 141
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 75/109 (68%), Gaps = 2/109 (1%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFED F V++IDPDGKKFD+ SR +S+N +M + +D+ + +YP+ ++F + LA +
Sbjct: 4 ILFEDTFEVKEIDPDGKKFDRTSRFVCYSENYEMDLQIDIATHIYPLG-HERFKLLLASS 62
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAYET 113
LNLDG+ DTG Y + +LADKYEY+M+GK+FK E S + + +
Sbjct: 63 LNLDGSADTGSYDTN-KPSLADKYEYVMYGKVFKYQKENSSSKVSVFAS 110
>gi|402593823|gb|EJW87750.1| DNA-directed RNA polymerase I [Wuchereria bancrofti]
Length = 149
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS +LF+D+F+V+ +DP+GKKFD+VSR+ S++ M ++LDVN++LYPM + DKF +
Sbjct: 1 MSTGILFDDMFLVKDVDPEGKKFDRVSRLFCDSESFKMELILDVNTQLYPMNLNDKFRLL 60
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKI-GDEGSGK--SLKAYET 113
LA TL DG PD + D +EY+M GK+++I G+E S + +L AY +
Sbjct: 61 LATTLRDDGLPDEREFDNQTHYPRLDPFEYVMFGKVYRIEGEESSSETNTLAAYAS 116
>gi|444727186|gb|ELW67691.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Tupaia
chinensis]
Length = 122
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 80/112 (71%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GD+F + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDEFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DG+ D G YTP R + A+++ Y+M+ K+++I GDE S ++ L AY
Sbjct: 64 LYEDGSLDDGEYTPTDDRPSRAEQFAYVMYRKVYRIEGDETSTEAATRLSAY 115
>gi|308487522|ref|XP_003105956.1| CRE-RPB-8 protein [Caenorhabditis remanei]
gi|308254530|gb|EFO98482.1| CRE-RPB-8 protein [Caenorhabditis remanei]
Length = 148
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 71/101 (70%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
++F+D+F V+ +DPDGKKFD+VSR +++ M +++D+NS++YP++ DKF + LA T
Sbjct: 4 IIFDDMFKVKSVDPDGKKFDRVSRYFCDAESFKMELIIDINSQIYPLKQNDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSG 105
L DG D G Y P A +YEY+M+GK++++ D+ +G
Sbjct: 64 LREDGLADEGEYDPKAEYPRIKQYEYVMYGKVYRLEDDDTG 104
>gi|302843796|ref|XP_002953439.1| hypothetical protein VOLCADRAFT_82285 [Volvox carteri f.
nagariensis]
gi|300261198|gb|EFJ45412.1| hypothetical protein VOLCADRAFT_82285 [Volvox carteri f.
nagariensis]
Length = 148
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 68/106 (64%), Gaps = 4/106 (3%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S +LFED+F V DPDGKKFD VSR HS +M + +D+N EL+P++ DKF++ L
Sbjct: 4 SQPILFEDVFDVVDKDPDGKKFDSVSRFICHSDLYEMDLHIDLNVELFPLQRNDKFSLVL 63
Query: 62 AHTLNLDGTPDTGYYTP----GARKTLADKYEYIMHGKLFKIGDEG 103
A TLNLD TP + Y R+TL D Y+Y+M+GK+FK D
Sbjct: 64 AWTLNLDATPGSEKYDAFPAISGRRTLMDNYDYVMYGKVFKYKDNN 109
>gi|391343666|ref|XP_003746128.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Metaseiulus occidentalis]
Length = 151
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 79/113 (69%), Gaps = 6/113 (5%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ IDP+GKKFD+ +R+ S++ M ++LD+NS++Y + +GDKF + +A +
Sbjct: 4 VLFEDIFDVKDIDPEGKKFDRCARLHCESESFKMDLILDINSQVYNVELGDKFRLVIAAS 63
Query: 65 LNLDGT-PDTGYYTPG-ARKTLADKYEYIMHGKLFKI-GDE---GSGKSLKAY 111
L DG+ PD+G Y P T AD++EY+M+GK+++I GD+ G L AY
Sbjct: 64 LREDGSDPDSGDYNPADDTPTRADQFEYVMYGKIYRIEGDDATTGECTRLAAY 116
>gi|357607597|gb|EHJ65602.1| hypothetical protein KGM_12645 [Danaus plexippus]
Length = 150
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 70/100 (70%), Gaps = 2/100 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VLFEDIF V+ +D GKKFD+VSR+ S++ M ++LD+NS +YPM +GDKF + LA T
Sbjct: 4 VLFEDIFNVKDMDQGGKKFDRVSRLHCESESFKMDLILDINSWIYPMELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDE 102
L +G PD G + P AD +EY+M+GK++++ GDE
Sbjct: 64 LRENGYPDGGEWNPLETEGNRADSFEYVMYGKVYRLDGDE 103
>gi|170584078|ref|XP_001896848.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
[Brugia malayi]
gi|158595811|gb|EDP34310.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide,
putative [Brugia malayi]
Length = 149
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M+ +LF+D+F+V+ +DP+GKKFD+VSR+ S++ M ++LDVN++LYPM + DKF +
Sbjct: 1 MATGILFDDMFLVKDVDPEGKKFDRVSRLFCDSESFKMELILDVNTQLYPMNLNDKFRLL 60
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKI-GDEGSGK--SLKAYET 113
LA TL DG PD + D +EY+M GK+++I G+E S + +L AY +
Sbjct: 61 LATTLRDDGLPDEREFDNQTHYPRLDPFEYVMFGKVYRIEGEESSSETNTLAAYAS 116
>gi|308808500|ref|XP_003081560.1| Glyoxylase (ISS) [Ostreococcus tauri]
gi|116060025|emb|CAL56084.1| Glyoxylase (ISS) [Ostreococcus tauri]
Length = 602
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 7 FEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLN 66
FED+F V DPDGKKFD+VSR + S+ D + +DVN ++YP+ VG +F++ALA TL+
Sbjct: 25 FEDMFEVIDRDPDGKKFDRVSRYKCRSE-FDAELTIDVNVDVYPLSVGQRFSLALAPTLS 83
Query: 67 LDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
LDG+P+ + + +LAD YEY+M+GK +K +E +G +A
Sbjct: 84 LDGSPEDDAFDQSGKPSLADGYEYVMYGKCYKKVEENAGGLTRA 127
>gi|58393552|ref|XP_320161.2| AGAP012397-PA [Anopheles gambiae str. PEST]
gi|55234259|gb|EAA00358.2| AGAP012397-PA [Anopheles gambiae str. PEST]
Length = 150
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 75/112 (66%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ +DP+GKKFD+VSR+ S++ M ++LD+NS LYP+ +GDKF + LA T
Sbjct: 4 ILFEDIFNVKDMDPEGKKFDRVSRLHCESESFKMDLILDINSWLYPLELGDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGA-RKTLADKYEYIMHGKLFKI-GDEG---SGKSLKAY 111
L+ DGT + Y + AD +EY+M GK+++I GD+ S L AY
Sbjct: 64 LHEDGTAASMEYNAAEIEGSRADSFEYVMFGKVYRIEGDDSQTESSNRLSAY 115
>gi|255073075|ref|XP_002500212.1| predicted protein [Micromonas sp. RCC299]
gi|226515474|gb|ACO61470.1| predicted protein [Micromonas sp. RCC299]
Length = 151
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
+++ +EDIF V DPDGKKFDKVSR SQ + + +D+N ++Y + VG +FT+ L+
Sbjct: 8 SVIAYEDIFEVIDRDPDGKKFDKVSRFRCRSQ-FEADLEIDINVDIYKLDVGTRFTLVLS 66
Query: 63 HTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSG 105
TL+LDGTP+ Y ++TLA Y+Y+M+GK+FK DE +G
Sbjct: 67 PTLSLDGTPEDPSYDQTGKETLASSYDYVMYGKVFKKEDENAG 109
>gi|452824724|gb|EME31725.1| DNA-directed RNA polymerase II subunit H [Galdieria sulphuraria]
Length = 154
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 73/115 (63%), Gaps = 12/115 (10%)
Query: 5 VLFEDIFVVEKID-------PDGK----KFDKVSRIEAHSQNCDMYMLLDVNSELYPMRV 53
VLFED+F V ++D P K KFDKVSRI + +N +LLD+N+E+YP+
Sbjct: 4 VLFEDVFSVTEVDMVKDPKDPSRKIKEKKFDKVSRILCYGENYQTELLLDINNEIYPIVE 63
Query: 54 GDKFTMALAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSL 108
+KF M LA TL+LDG PD G Y P +L DK+EY M+GK+FK +E GKS+
Sbjct: 64 KEKFEMVLAPTLSLDGRPDDGLYHPSEEPSLLDKFEYGMYGKIFKFAEE-VGKSV 117
>gi|325182335|emb|CCA16788.1| DNAdirected RNA polymerase I putative [Albugo laibachii Nc14]
Length = 213
Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFEDIF V +++P+GK FDKV+R+ + ++ + LD+NSE++ ++ DKFT AL TL
Sbjct: 76 LFEDIFEVRELNPEGKNFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVCTL 135
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAYET 113
+L+G PD G Y + TL D+Y+Y M+GK+F EG G ++ Y +
Sbjct: 136 DLEGKPDDGIYNQSGKATLLDRYDYGMYGKIFHYEHEG-GNNVAIYAS 182
>gi|393909969|gb|EFO27685.2| DNA-directed RNA polymerase I [Loa loa]
Length = 161
Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 75/116 (64%), Gaps = 3/116 (2%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M+ +LF+D+F+V+ +DP+GKKFD+VSR+ S++ M ++LDVN++LYPM + DKF +
Sbjct: 13 MATGILFDDMFLVKDVDPEGKKFDRVSRLFCDSESFKMELILDVNTQLYPMNLNDKFRLL 72
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSG---KSLKAYET 113
LA TL DG PD + D +EY+M GK+++I E S +L AY +
Sbjct: 73 LATTLRDDGLPDEREFDNQTHYPRLDPFEYVMFGKVYRIEGEESNSETNTLAAYAS 128
>gi|325182334|emb|CCA16787.1| DNAdirected RNA polymerase I putative [Albugo laibachii Nc14]
Length = 225
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFEDIF V +++P+GK FDKV+R+ + ++ + LD+NSE++ ++ DKFT AL TL
Sbjct: 88 LFEDIFEVRELNPEGKNFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVCTL 147
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAYET 113
+L+G PD G Y + TL D+Y+Y M+GK+F EG G ++ Y +
Sbjct: 148 DLEGKPDDGIYNQSGKATLLDRYDYGMYGKIFHYEHEG-GNNVAIYAS 194
>gi|325182336|emb|CCA16789.1| DNAdirected RNA polymerase I putative [Albugo laibachii Nc14]
Length = 216
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFEDIF V +++P+GK FDKV+R+ + ++ + LD+NSE++ ++ DKFT AL TL
Sbjct: 79 LFEDIFEVRELNPEGKNFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVCTL 138
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAYET 113
+L+G PD G Y + TL D+Y+Y M+GK+F EG G ++ Y +
Sbjct: 139 DLEGKPDDGIYNQSGKATLLDRYDYGMYGKIFHYEHEG-GNNVAIYAS 185
>gi|395334230|gb|EJF66606.1| hypothetical protein DICSQDRAFT_123228 [Dichomitus squalens
LYAD-421 SS1]
Length = 674
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 51/121 (42%), Positives = 76/121 (62%), Gaps = 13/121 (10%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LF+DIF + ID +GKKFD+VSR+ AHS+N DM + LD N+EL+P++ G +ALA +
Sbjct: 525 ILFDDIFSINDIDKEGKKFDRVSRLYAHSKNYDMDLTLDYNTELFPIQSGQSIALALASS 584
Query: 65 LNL----------DGTPDTGYYTPGA--RKTLADKYEYIMHGKLFKIGDEGSGKSLKAYE 112
L+ D D + P A R+ L D YEY+M+GK+++ D GSG+ + AY
Sbjct: 585 LSRNPQGAAGTTEDEDKDRDVWRPDAKGRRGLDDDYEYVMYGKVYRF-DSGSGEVVTAYA 643
Query: 113 T 113
+
Sbjct: 644 S 644
>gi|312066684|ref|XP_003136387.1| DNA-directed RNA polymerase I [Loa loa]
Length = 149
Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 75/116 (64%), Gaps = 3/116 (2%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M+ +LF+D+F+V+ +DP+GKKFD+VSR+ S++ M ++LDVN++LYPM + DKF +
Sbjct: 1 MATGILFDDMFLVKDVDPEGKKFDRVSRLFCDSESFKMELILDVNTQLYPMNLNDKFRLL 60
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSG---KSLKAYET 113
LA TL DG PD + D +EY+M GK+++I E S +L AY +
Sbjct: 61 LATTLRDDGLPDEREFDNQTHYPRLDPFEYVMFGKVYRIEGEESNSETNTLAAYAS 116
>gi|66816149|ref|XP_642084.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
gi|74856819|sp|Q54YW8.1|RPAB3_DICDI RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
rpabc3; Short=RNA polymerases I, II, and III subunit
ABC3; AltName: Full=RNA polymerase B subunit 8;
Short=RPB8; AltName: Full=RPB17
gi|60470212|gb|EAL68192.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
Length = 142
Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFED F V++IDPDGKKFD+VSR +S+N +M + +D+ + +YP+ ++F M LA +
Sbjct: 4 ILFEDTFEVKEIDPDGKKFDRVSRFVCYSENYEMDLQIDIATHIYPLG-HERFKMVLASS 62
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAYET 113
LNLDG+ D + +LADKY+Y+M+GK+FK E S + + +
Sbjct: 63 LNLDGSSDNSGSYDTNKPSLADKYDYVMYGKIFKYQKENSSSKVSVFAS 111
>gi|392597250|gb|EIW86572.1| RNA polymerase I [Coniophora puteana RWD-64-598 SS2]
Length = 157
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 78/124 (62%), Gaps = 14/124 (11%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
SNIV F+DIF + ID +GKKFD+VSR+ AHS+N DM M LD N+ELYP+ G F MAL
Sbjct: 6 SNIV-FDDIFTINSIDKEGKKFDRVSRLFAHSKNYDMDMTLDYNTELYPLANGQSFAMAL 64
Query: 62 AHTLNLDGTP----------DTGYYTPG--ARKTLADKYEYIMHGKLFKIGDEGSGKSLK 109
A +L+ +G P D + P R+ L + Y+Y+M+GK++K D G+ + +
Sbjct: 65 ASSLSREGGPANADGEENEEDRDAWRPDGKGRRGLEEDYDYVMYGKVYKF-DGGTSEIVT 123
Query: 110 AYET 113
AY +
Sbjct: 124 AYAS 127
>gi|358059381|dbj|GAA94787.1| hypothetical protein E5Q_01441 [Mixia osmundae IAM 14324]
Length = 146
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 77/109 (70%), Gaps = 3/109 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LF+D+F + ++D G KFD+VSR+EAHS N DM + LD ++EL+P++ +KF++ALA
Sbjct: 6 ILFDDLFTIRELDKGGPKFDRVSRLEAHSDNHDMNVTLDFHNELFPIQDKEKFSLALASD 65
Query: 65 LNLD--GTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
LN+D G D + TLAD++EY+M+GK++K DEG+ + +K Y
Sbjct: 66 LNVDPTGQKDALDLSRLPSGTLADEWEYVMYGKVYKF-DEGTQEKVKVY 113
>gi|17553210|ref|NP_498036.1| Protein RPB-8 [Caenorhabditis elegans]
gi|2833302|sp|Q19826.1|RPAB3_CAEEL RecName: Full=Probable DNA-directed RNA polymerases I, II, and III
subunit RPABC3; Short=RNA polymerases I, II, and III
subunit ABC3; AltName: Full=RNA polymerase B subunit 8;
Short=RPB8; AltName: Full=RPB17
gi|351058316|emb|CCD65759.1| Protein RPB-8 [Caenorhabditis elegans]
Length = 148
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 70/101 (69%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
++F+D+F V+ +DPDGKKFD+VSR +++ M +++D+NS++YP++ DK + LA T
Sbjct: 4 IIFDDMFKVKSVDPDGKKFDRVSRYFCDAESFKMELIIDINSQIYPLKQNDKVRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSG 105
L DG D G Y P A +YEY+M+GK++++ D+ +G
Sbjct: 64 LREDGLADEGEYDPKAEYPRIKQYEYVMYGKVYRLEDDDTG 104
>gi|313238106|emb|CBY19960.1| unnamed protein product [Oikopleura dioica]
gi|313240808|emb|CBY33100.1| unnamed protein product [Oikopleura dioica]
Length = 149
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 69/102 (67%), Gaps = 3/102 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
VL+E+IF ++ IDP+GK+F++V RI A ++ M ++LDVNS LY + GDKF + LA T
Sbjct: 4 VLYEEIFNIKDIDPEGKQFERVKRIHAECESSKMELILDVNSLLYSPQPGDKFRLMLATT 63
Query: 65 LNLDGTPDTGYYTPG--ARKTLADKYEYIMHGKLFKI-GDEG 103
LN DG PD G Y P + T ++YIMHG +++I GDE
Sbjct: 64 LNDDGEPDAGEYDPRWEEKSTRTAAFDYIMHGLIYRISGDEA 105
>gi|256016577|emb|CAR63584.1| putative Rna polymerase ii (b) subunit protein 8 [Angiostrongylus
cantonensis]
Length = 148
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 75/112 (66%), Gaps = 3/112 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
V+F+D+F V+ IDPDGKKFD+ SR+ S++ M ++LDVN+++YP+ + DKF + + +
Sbjct: 4 VIFDDMFTVKNIDPDGKKFDRCSRLFCDSESFSMELILDVNTQIYPVNLNDKFRLMITTS 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKI--GDEGS-GKSLKAYET 113
+ DG PD G + P A + ++EY+M G++++I D GS G + AY +
Sbjct: 64 VRDDGMPDEGEHDPQANYSRVAQFEYVMFGRVYRIEGDDSGSDGTRIAAYAS 115
>gi|397580313|gb|EJK51535.1| hypothetical protein THAOC_29280 [Thalassiosira oceanica]
Length = 151
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 69/109 (63%), Gaps = 5/109 (4%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
+ + LFEDIF + ++P+GKKF++V+R+ A D +LLD N ++Y + +K T+ L
Sbjct: 5 ARVTLFEDIFEINALNPEGKKFERVNRLSAKGTTFDCDLLLDYNCQIYSLHEEEKMTLVL 64
Query: 62 AHTLNLDGTPDT-GYYTPGA----RKTLADKYEYIMHGKLFKIGDEGSG 105
A TLNLDG+PD Y P A TLAD YEY+MHG++F + + G
Sbjct: 65 ASTLNLDGSPDDHTSYNPAASFKNEPTLADNYEYVMHGRVFDVSYKKDG 113
>gi|224013028|ref|XP_002295166.1| RNA polymerase [Thalassiosira pseudonana CCMP1335]
gi|220969128|gb|EED87470.1| RNA polymerase [Thalassiosira pseudonana CCMP1335]
Length = 153
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 68/109 (62%), Gaps = 5/109 (4%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
+ + LFEDIF + ++P+GKKFD V+R+ A + +LLD N ++Y + G+K T+ L
Sbjct: 7 ARVTLFEDIFEITHLNPEGKKFDLVNRLSATGTTFECDLLLDYNCQIYSLLEGEKMTLVL 66
Query: 62 AHTLNLDGTPDT-GYYTPGARK----TLADKYEYIMHGKLFKIGDEGSG 105
A TLNLDGTPD Y P TLAD YEY+MHG++F + + G
Sbjct: 67 ASTLNLDGTPDDHTSYNPATSHNNELTLADNYEYVMHGRVFDVSYKKDG 115
>gi|392571590|gb|EIW64762.1| RNA polymerase [Trametes versicolor FP-101664 SS1]
Length = 156
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 77/123 (62%), Gaps = 13/123 (10%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
SNIV F+DIF + ID +GKKFD+VSR+ AHS+N DM + LD N EL+P++ G F +AL
Sbjct: 6 SNIV-FDDIFTINAIDKEGKKFDRVSRLYAHSKNYDMDLTLDYNIELFPLQSGQSFALAL 64
Query: 62 AHTLNL---------DGTPDTGYYTPGA--RKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
A +L+ D D + P A RK L D YEY+M+GK+++ D GS + + A
Sbjct: 65 ASSLSRAPQGPAGAEDEDKDRDVWRPDAKGRKGLDDDYEYVMYGKVYRF-DGGSAEIVTA 123
Query: 111 YET 113
Y +
Sbjct: 124 YAS 126
>gi|145351501|ref|XP_001420114.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580347|gb|ABO98407.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 136
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 69/101 (68%), Gaps = 1/101 (0%)
Query: 10 IFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDG 69
+F V DPDGKKFD+VSR + S+ D + +DVN ++YP+ VG +F++ALA TL+LDG
Sbjct: 1 MFEVIDRDPDGKKFDRVSRYKCRSE-FDAELTIDVNVDVYPLTVGQRFSLALAPTLSLDG 59
Query: 70 TPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
TP+ + + +LAD YEY+M+GK +K DE +G +A
Sbjct: 60 TPEDDAFDQSGKPSLADGYEYVMYGKCYKKVDENAGGLTRA 100
>gi|341896175|gb|EGT52110.1| hypothetical protein CAEBREN_12228 [Caenorhabditis brenneri]
Length = 149
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 69/101 (68%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
++F+++F V+ +DPDGKKFD+VSR ++ M +++D+NS++YP++ DK + LA T
Sbjct: 4 IIFDEMFRVKSVDPDGKKFDRVSRYFCDAETYKMDLIIDINSQIYPLKQNDKVRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSG 105
L DG D G Y P A +YEY+M+GK++++ D+ +G
Sbjct: 64 LREDGLADEGEYDPKAEYPRIKQYEYVMYGKVYRMEDDDTG 104
>gi|449550819|gb|EMD41783.1| hypothetical protein CERSUDRAFT_110350 [Ceriporiopsis subvermispora
B]
Length = 155
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 77/123 (62%), Gaps = 13/123 (10%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ V+F+DIF + ID +GKKFD+VSR+ AHS+N DM + LD N ELYP+ V D FT+AL
Sbjct: 5 SSNVVFDDIFTINAIDKEGKKFDRVSRLYAHSKNYDMDLTLDYNVELYPLHVDDSFTLAL 64
Query: 62 AHTLNLDGTPDTG---------YYTPG--ARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
A +L G P T + P R+ L + YEY+M+GK+++ D GS + + A
Sbjct: 65 ASSLAR-GPPGTADGEDDKDRDVWRPDGKGRRGLEEDYEYVMYGKVYRF-DGGSAEIVTA 122
Query: 111 YET 113
Y +
Sbjct: 123 YAS 125
>gi|443923976|gb|ELU43060.1| RNA polymerase rpb8 domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 455
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 48/113 (42%), Positives = 73/113 (64%), Gaps = 7/113 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LF+D+F + ID DGKK+D+VSR+ A S N M++ LD N+E+YP++ G+KFT+ LA T
Sbjct: 8 ILFDDLFTITDIDMDGKKYDRVSRLVATSANLGMHLTLDFNTEIYPLQAGEKFTLVLAST 67
Query: 65 LNLDG----TPDTGYYTPGAR--KTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
L G T + P + + L + YEY+M+G ++K DEG G ++ AY
Sbjct: 68 LARGGAAEATEGKDVWRPDGKGQQGLEEDYEYVMYGYVYKY-DEGEGDNVTAY 119
>gi|393218489|gb|EJD03977.1| RNA polymerase I [Fomitiporia mediterranea MF3/22]
Length = 160
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 78/125 (62%), Gaps = 17/125 (13%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
SNIV F+D+F + ID DGKKFD+VSR+ AHS N DM + LD N+ELYP++ G+ F++ L
Sbjct: 6 SNIV-FDDLFTINAIDKDGKKFDRVSRLFAHSSNYDMDLTLDYNTELYPLKSGESFSLVL 64
Query: 62 AHTL----------NLDGTP---DTGYYTPG--ARKTLADKYEYIMHGKLFKIGDEGSGK 106
A +L DGT DT + P R+ L + YEY+M+G+++K D G+ +
Sbjct: 65 ASSLVRAVEGGAINGTDGTEEEKDTHIWRPDGKGRRGLEEDYEYVMYGRVYKF-DGGTAE 123
Query: 107 SLKAY 111
+ AY
Sbjct: 124 IVTAY 128
>gi|412992657|emb|CCO18637.1| predicted protein [Bathycoccus prasinos]
Length = 166
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 76/129 (58%), Gaps = 4/129 (3%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQN-CDMYMLLDVNSELYPMRVGDKFTMA 60
S+ + +E +F +DPDGKKFD+VSR S D + LDVN ++YP+ VG KFT+
Sbjct: 15 SSSIKYEAMFETIDVDPDGKKFDRVSRFVCRSTPYGDSELTLDVNVDVYPIEVGTKFTLV 74
Query: 61 LAHTLNLDGTPD--TGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAYETTTQSI 118
LA TLN DG+P+ T + ++TLAD+YEY+ HGK +K + S E T I
Sbjct: 75 LASTLNTDGSPEDPTTFDQSRNKETLADEYEYVTHGKCYKKTEPNEDVS-NGTEKTATYI 133
Query: 119 HYYFIWACV 127
+ + ACV
Sbjct: 134 SFGGLLACV 142
>gi|378726456|gb|EHY52915.1| DNA-directed RNA polymerase II subunit H [Exophiala dermatitidis
NIH/UT8656]
Length = 143
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 81/115 (70%), Gaps = 7/115 (6%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTM 59
MS +LFE+ F + I+ K+D+VSRI+A+S+ +L LDVN+ELYP+ V D+ T+
Sbjct: 1 MSENILFENSFKITDINS--AKYDRVSRIKAYSEGGQEVLLTLDVNTELYPLNVDDRMTV 58
Query: 60 ALAHTLNLDGTPD--TGYYTPG-ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
ALA +LNLDG+ D G+ G +TLAD+++Y+ HGK+++ +EGSG+++K Y
Sbjct: 59 ALALSLNLDGSKDDGKGWREVGRGEQTLADEFDYVCHGKIYRF-EEGSGENIKVY 112
>gi|300122330|emb|CBK22902.2| unnamed protein product [Blastocystis hominis]
Length = 146
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 69/105 (65%), Gaps = 1/105 (0%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFE+IF V ++PDGK F+KV+R A S M ML+D+N+++YP++ D+F++ LA
Sbjct: 6 ILFEEIFEVRSVNPDGKAFEKVTRFAATSVTYGMDMLIDINTDIYPLKGTDRFSLVLASK 65
Query: 65 LNLDGTPDTGYYTPGARK-TLADKYEYIMHGKLFKIGDEGSGKSL 108
L D PD G Y +++ TL D Y+Y MHGK+FK + GK L
Sbjct: 66 LYKDNRPDPGVYMDYSKEHTLLDDYDYCMHGKVFKYQYKDDGKVL 110
>gi|339240367|ref|XP_003376109.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Trichinella spiralis]
gi|316975194|gb|EFV58646.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Trichinella spiralis]
Length = 153
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 71/114 (62%), Gaps = 3/114 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LF+D+FV++ IDP+GKKFD VSR+ S+ M ++LD++S LYP+ +GDKF + L T
Sbjct: 4 ILFDDVFVIKDIDPEGKKFDSVSRLFCESEAYKMDLILDIHSHLYPVELGDKFRLVLTST 63
Query: 65 LNLD---GTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAYETTT 115
L D GT + Y + + D ++Y+MHGK+++I D G + + T
Sbjct: 64 LRDDGGYGTTEEEEYDVHFKSSRLDSFDYVMHGKIYRIDDAGGSGGIDSAHVAT 117
>gi|109506290|ref|XP_226176.3| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Rattus norvegicus]
gi|109506911|ref|XP_001071711.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Rattus norvegicus]
Length = 151
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 79/109 (72%), Gaps = 2/109 (1%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M+ +LFEDIF V+ IDP+GKKFD+VS++ S++ + ++LD+N ++YP+ +GDKF +
Sbjct: 1 MTAGILFEDIFDVKDIDPEGKKFDRVSQLHCESESFKVDLILDINIQIYPVDLGDKFRLV 60
Query: 61 LAHTLNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS 107
+A TL D T D G Y P R + AD++EY+M+GK+++I GDE S ++
Sbjct: 61 IASTLYDDDTLDDGEYNPTDGRPSRADQFEYVMYGKVYRIEGDESSTEA 109
>gi|326435064|gb|EGD80634.1| RNA polymerase subunit [Salpingoeca sp. ATCC 50818]
Length = 140
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 68/101 (67%), Gaps = 1/101 (0%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFED+F V+ DP G+KF++VSRI + ++LD+N++LYPM + ++F++ LA +L
Sbjct: 3 LFEDVFTVKAKDPKGRKFERVSRIVCEAFMTGFELILDLNTQLYPMELDEQFSLCLARSL 62
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGK 106
+ + P +G Y +LAD ++Y+MHG ++++ +E G+
Sbjct: 63 DDEAAPSSGTYVQNRESSLADSFDYVMHGTIYRV-EEKEGQ 102
>gi|328862238|gb|EGG11339.1| hypothetical protein MELLADRAFT_33205 [Melampsora larici-populina
98AG31]
Length = 142
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 72/111 (64%), Gaps = 6/111 (5%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LF+D+F + +D +GKKFD+VSR++A S N M + LD N ELYP+++GD F +AL+ +L
Sbjct: 1 LFDDLFTLTDLDKEGKKFDRVSRLKAISSNHSMNLTLDFNIELYPLKIGDCFALALSSSL 60
Query: 66 NLDGTPDTG-----YYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+G D G + + LAD+Y+Y+M+GKL+K D G+ ++ Y
Sbjct: 61 TPEGEKDGGAEIQSWRLEEGKGGLADEYDYVMYGKLYKF-DTGASDTVTCY 110
>gi|169844296|ref|XP_001828869.1| RNA polymerase I [Coprinopsis cinerea okayama7#130]
gi|116509981|gb|EAU92876.1| RNA polymerase I [Coprinopsis cinerea okayama7#130]
Length = 153
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 75/120 (62%), Gaps = 9/120 (7%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ +LF+DIF + ID +GKKFD+VSR+ AHS+N DM + LD N EL+P++ G F +AL
Sbjct: 5 SSNILFDDIFTISDIDKEGKKFDRVSRLYAHSKNYDMDLTLDYNVELFPLKEGQSFALAL 64
Query: 62 AHTLNLDGT-------PDTGYYTPGA-RKTLADKYEYIMHGKLFKIGDEGSGKSLKAYET 113
A +L G + + P + R+ L D YEY+M+GK++K D S + + AY +
Sbjct: 65 ASSLTKGGAKGDDEEDKEHDVWRPDSKRRGLDDDYEYVMYGKVYKF-DGASSEIVTAYAS 123
>gi|406861892|gb|EKD14944.1| RNA polymerase Rpb8 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 149
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 9/113 (7%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFED F ++ D K+D+V+RI S + D +M LD+N+ELYP + D + +A TL
Sbjct: 8 LFEDTFHIQTFDQ--SKYDRVARIGGKSHDDDTFMTLDINTELYPCAIDDNLQVVIATTL 65
Query: 66 NLDGTPDTG-------YYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
LDG+ D G + PG TLAD ++Y+ HGK++K D G ++KAY
Sbjct: 66 ALDGSKDGGKGWRDVSQHGPGGEPTLADMFDYVCHGKVYKFEDAEDGATIKAY 118
>gi|317025199|ref|XP_003188524.1| UDP-glucose 4-epimerase Gal10 [Aspergillus niger CBS 513.88]
Length = 110
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 73/112 (65%), Gaps = 11/112 (9%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ VLFED F + I+ +K+D+VSR+ +S + + LDVNSELYP VG+ MA
Sbjct: 1 MSDPVLFEDTFTITTINS--QKYDRVSRLSCNSTDTLSHFTLDVNSELYPCVVGESVNMA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGSGK 106
LA TL+LDG D+G + G R +TLA+ Y+Y+ HGK+++ +EGS +
Sbjct: 59 LASTLSLDGKDDSG--SKGWREVGMGEQTLANDYDYVCHGKVYRF-EEGSSQ 107
>gi|392578869|gb|EIW71996.1| hypothetical protein TREMEDRAFT_24691 [Tremella mesenterica DSM
1558]
Length = 156
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 69/118 (58%), Gaps = 20/118 (16%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
+N +LFED F+V+++D GKKFD+VSRIEA SQN M ++LD+ +ELYP+ + FT+AL
Sbjct: 4 TNNILFEDRFIVDEVDKGGKKFDRVSRIEATSQNSRMSLVLDIANELYPLNPRETFTLAL 63
Query: 62 AHTL-----NLDGTPDTGYYT---------------PGARKTLADKYEYIMHGKLFKI 99
A +L +DG D G + LAD YEY+M+GK+ I
Sbjct: 64 ARSLLSEGEQIDGDADLDGEENGGGGGGKKVKRELWRGGDQGLADDYEYVMYGKVTGI 121
>gi|409041179|gb|EKM50665.1| hypothetical protein PHACADRAFT_152837 [Phanerochaete carnosa
HHB-10118-sp]
Length = 153
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 77/121 (63%), Gaps = 12/121 (9%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
SNIV F+DIF + ID +GKKFD+VSR+ AHS+N DM + LD N EL+P++ G + +AL
Sbjct: 6 SNIV-FDDIFTINAIDKEGKKFDRVSRLYAHSKNYDMDLTLDYNIELFPLQQGQQVALAL 64
Query: 62 AHTLNLDGTP-------DTGYYTPG--ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAYE 112
A +L+ G P D + P R+ L + YEY+M+GK+++ D G+ + + AY
Sbjct: 65 ATSLS-RGPPADGEEEKDVEVWRPDGKGRRGLEEDYEYVMYGKVYRF-DGGTAEIVTAYA 122
Query: 113 T 113
+
Sbjct: 123 S 123
>gi|281201213|gb|EFA75427.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 140
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 72/109 (66%), Gaps = 3/109 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFED F V++IDPDGKKFD+VSR + ++ +M + +D+ + +YPM +KF + LA +
Sbjct: 4 ILFEDTFEVKEIDPDGKKFDRVSRFICYGESYEMDLHIDIATHIYPME-HEKFKLVLASS 62
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAYET 113
L+LDGT D + + +LADK++Y+M GK+FK + S + + +
Sbjct: 63 LSLDGTMDISF--DSNKPSLADKFDYVMFGKIFKYQKDNSSSKVSIFAS 109
>gi|336265870|ref|XP_003347705.1| hypothetical protein SMAC_03803 [Sordaria macrospora k-hell]
gi|380091239|emb|CCC11096.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 152
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 73/117 (62%), Gaps = 10/117 (8%)
Query: 2 SNIVLFEDIFVVEKI-DPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
S+ LFED F VE+I DP K+D+V R+ S + M LD+N EL+P++VGD +A
Sbjct: 6 SDAQLFEDDFKVERISDP---KYDRVDRLYCTSTDGQTSMQLDINKELFPVKVGDYLRIA 62
Query: 61 LAHTLNLDGTPD--TGYYTPG----ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
LA +L+LDG+ D G+ +TLAD YEY+ HGK++K D G+++KAY
Sbjct: 63 LATSLSLDGSKDDERGWRDAAKLGSVEQTLADSYEYVCHGKVYKFEDGKDGQTIKAY 119
>gi|170084077|ref|XP_001873262.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650814|gb|EDR15054.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 162
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 75/130 (57%), Gaps = 21/130 (16%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
+NIV F+DIF + ID +GKKFD+VSR+ AHS+N DM + LD N EL+P+ F +AL
Sbjct: 6 ANIV-FDDIFTISDIDKEGKKFDRVSRLYAHSKNYDMDLTLDYNVELFPLEKDQSFALAL 64
Query: 62 AHTLNLDGTPDTGYYTPGA------------------RKTLADKYEYIMHGKLFKIGDEG 103
A +L G P + T GA R+ L D YEY+M+GK++K D G
Sbjct: 65 ASSLARGGAPGSS-GTDGAQEEADDKERDVWRPDGKGRRGLEDDYEYVMYGKVYKF-DGG 122
Query: 104 SGKSLKAYET 113
+ + + AY +
Sbjct: 123 TSEIVTAYAS 132
>gi|403270068|ref|XP_003927020.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 isoform 2 [Saimiri boliviensis boliviensis]
Length = 168
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 71/112 (63%), Gaps = 3/112 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 50 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 109
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAYETTTQ 116
L DGT D G Y P + + Y+ +G L + +G +L +E ++
Sbjct: 110 LYEDGTLDDGEYNPTDDRPSSSA--YVSYGGLL-MRLQGDANNLHGFEVDSR 158
>gi|332818614|ref|XP_526411.3| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 [Pan troglodytes]
Length = 168
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 71/112 (63%), Gaps = 3/112 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 50 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 109
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAYETTTQ 116
L DGT D G Y P + + Y+ +G L + +G +L +E ++
Sbjct: 110 LYEDGTLDDGEYNPTDDRPSSSA--YVSYGGLL-MRLQGDANNLHGFEVDSR 158
>gi|145228699|ref|XP_001388658.1| UDP-glucose 4-epimerase Gal10 [Aspergillus niger CBS 513.88]
gi|134054750|emb|CAK43590.1| unnamed protein product [Aspergillus niger]
gi|350637886|gb|EHA26242.1| hypothetical protein ASPNIDRAFT_196819 [Aspergillus niger ATCC
1015]
Length = 144
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 73/112 (65%), Gaps = 11/112 (9%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ VLFED F + I+ +K+D+VSR+ +S + + LDVNSELYP VG+ MA
Sbjct: 1 MSDPVLFEDTFTITTINS--QKYDRVSRLSCNSTDTLSHFTLDVNSELYPCVVGESVNMA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGSGK 106
LA TL+LDG D+G + G R +TLA+ Y+Y+ HGK+++ +EGS +
Sbjct: 59 LASTLSLDGKDDSG--SKGWREVGMGEQTLANDYDYVCHGKVYRF-EEGSSQ 107
>gi|390604109|gb|EIN13500.1| RNA polymerase [Punctularia strigosozonata HHB-11173 SS5]
Length = 154
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 74/118 (62%), Gaps = 10/118 (8%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
++F+DIF V ID +GKKFD+VSR+ AHS+N DM + LD N+EL+P++ F +AL+ +
Sbjct: 8 IVFDDIFTVNAIDKEGKKFDRVSRLYAHSKNYDMDLTLDYNTELFPLKNEQSFALALSSS 67
Query: 65 LNLDGTP-------DTGYYTPGAR--KTLADKYEYIMHGKLFKIGDEGSGKSLKAYET 113
L+ G P + + P + + L + Y+Y+M+GK++K D G+ + AY +
Sbjct: 68 LSRGGAPGGDDEAEEKNVWRPDGKGQRGLEEDYDYVMYGKVYKF-DSGTSEISTAYAS 124
>gi|384498418|gb|EIE88909.1| hypothetical protein RO3G_13620 [Rhizopus delemar RA 99-880]
Length = 120
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 10/110 (9%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA---- 60
+LF+DIF ++ +DP GK+FD+VSR+ A S+N +M + LD NSE+YP+ VG+KF+
Sbjct: 6 ILFQDIFDIKDLDPQGKRFDRVSRLVARSENYEMDLTLDFNSEIYPLNVGEKFSFVLASS 65
Query: 61 -----LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSG 105
A T ++ PG R L+D+YEY+M GK++K D G
Sbjct: 66 LSLEASASTSGVEKRESWRERAPGER-DLSDEYEYVMFGKVYKFEDSNKG 114
>gi|425771918|gb|EKV10347.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Penicillium digitatum Pd1]
gi|425777313|gb|EKV15494.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Penicillium digitatum PHI26]
Length = 143
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 71/113 (62%), Gaps = 6/113 (5%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + I+ +K+D+VSR+ +S + + LDVN+ELYP VG+ ++A
Sbjct: 1 MSDPLLFEDTFTITSIN--AQKYDRVSRLTCNSNDASLTFTLDVNTELYPCAVGESLSLA 58
Query: 61 LAHTLNLDGTPDTGYY---TPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
LA TL+LDG DT +TLAD Y+Y+ HGK+++ +EG+ K A
Sbjct: 59 LASTLSLDGKEDTRASWREVSMGDQTLADDYDYVCHGKVYRF-EEGATKDTMA 110
>gi|409083391|gb|EKM83748.1| hypothetical protein AGABI1DRAFT_117227 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426201562|gb|EKV51485.1| hypothetical protein AGABI2DRAFT_197624 [Agaricus bisporus var.
bisporus H97]
Length = 158
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 72/123 (58%), Gaps = 14/123 (11%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ ++F+DIF + ID +GKKFD+VSR+ AHS+N DM + LD N EL+P+ + F +AL
Sbjct: 5 SSSIIFDDIFTINAIDKEGKKFDRVSRLYAHSKNYDMDLTLDYNIELFPLENNESFALAL 64
Query: 62 AHTLNLDGTPDTG-----------YYTPG--ARKTLADKYEYIMHGKLFKIGDEGSGKSL 108
A +L P G + P R L D YEY+M+GK+++ D G+ + +
Sbjct: 65 ASSLARGPQPVAGEGDDEADKDRHIWRPDGKGRHGLEDDYEYVMYGKVYRF-DSGTAEIV 123
Query: 109 KAY 111
AY
Sbjct: 124 TAY 126
>gi|85109003|ref|XP_962700.1| hypothetical protein NCU08030 [Neurospora crassa OR74A]
gi|28924311|gb|EAA33464.1| hypothetical protein NCU08030 [Neurospora crassa OR74A]
gi|39979130|emb|CAE85504.1| related to DNA-directed RNA polymerase chain RPB8 [Neurospora
crassa]
Length = 152
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 73/117 (62%), Gaps = 10/117 (8%)
Query: 2 SNIVLFEDIFVVEKI-DPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
S+ LFED F VE+I DP K+D+V R+ S + M LDVN EL+P++VG+ +A
Sbjct: 6 SDAQLFEDEFKVERISDP---KYDRVDRLYCTSVDGQTSMQLDVNKELFPVKVGEYLRIA 62
Query: 61 LAHTLNLDGTPD--TGYYTPG----ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
LA +L+LDG+ D G+ +TLAD YEY+ HGK++K D G+++KAY
Sbjct: 63 LATSLSLDGSKDDERGWRDAAKLGSVEQTLADSYEYVCHGKVYKFEDGKDGQTIKAY 119
>gi|255953797|ref|XP_002567651.1| Pc21g06060 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589362|emb|CAP95503.1| Pc21g06060 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 143
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 71/113 (62%), Gaps = 6/113 (5%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + ++ +K+D+VSR+ +S + + LDVN+ELYP VG+ ++A
Sbjct: 1 MSDPLLFEDTFTITSVN--AQKYDRVSRLTCNSNDASLTFTLDVNTELYPCAVGESLSLA 58
Query: 61 LAHTLNLDGTPDTGYY---TPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
LA TL+LDG DT ++LAD Y+Y+ HGK+++ +EG+ K A
Sbjct: 59 LASTLSLDGKEDTRASWREVSMGEQSLADDYDYVCHGKVYRF-EEGATKDTMA 110
>gi|158455108|gb|AAI18248.1| POLR2H protein [Bos taurus]
Length = 84
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 55/74 (74%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP 78
L DGT D G Y P
Sbjct: 64 LYEDGTLDDGEYNP 77
>gi|4406232|gb|AAD19908.1| RPB17 [Rattus norvegicus]
Length = 83
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 55/74 (74%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP 78
L DGT D G Y P
Sbjct: 64 LYEDGTLDDGEYNP 77
>gi|328869385|gb|EGG17763.1| RNA polymerase II core subunit [Dictyostelium fasciculatum]
Length = 164
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 72/106 (67%), Gaps = 3/106 (2%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MSNI LFED F V+ IDPDGKKFD+VSR S++ +M + LD+ + +Y + +KF +
Sbjct: 1 MSNI-LFEDNFEVKDIDPDGKKFDRVSRYVCQSESYEMDLHLDLATHIYQLG-HEKFKLV 58
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGK 106
LA +L+LDG+ + + + +LADKY+Y+M+GK+FK E S K
Sbjct: 59 LASSLSLDGSLEQVAFDSN-KPSLADKYDYVMYGKIFKYQKEVSSK 103
>gi|357480469|ref|XP_003610520.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Medicago truncatula]
gi|355511575|gb|AES92717.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Medicago truncatula]
Length = 140
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 70/109 (64%), Gaps = 8/109 (7%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LF+D F + ++P+G+K+DKVSRI A S+ M+MLLDVN+E+YPM +KF +AL+ +
Sbjct: 4 LLFDDFFKIVDVNPNGEKYDKVSRIVARSEKHGMHMLLDVNTEIYPMDRKEKFLLALSPS 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAYET 113
L L+ T ++ +K+EYIM+G+L+ I +G +S E
Sbjct: 64 LVLN--------TKDGPVSIQEKFEYIMYGRLYDIKADGLSRSPPEVEV 104
>gi|407920287|gb|EKG13502.1| RNA polymerase Rpb8 [Macrophomina phaseolina MS6]
Length = 142
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 68/114 (59%), Gaps = 6/114 (5%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ L+ED F + +D K+D+V+R+ S + M LD+NSELYP+ VG+ +
Sbjct: 1 MADSQLYEDTFHITSLD--AAKYDRVTRLAGTSADNQTTMTLDINSELYPVEVGETVQLL 58
Query: 61 LAHTLNLDGTPDTGYYT---PGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
LA TLNLDGT D + TLAD Y+Y+ HGK+++ +EG G +K Y
Sbjct: 59 LASTLNLDGTKDERGWRELDSSTETTLADMYDYVCHGKVYRF-EEGDGDHIKVY 111
>gi|358375168|dbj|GAA91753.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Aspergillus kawachii IFO 4308]
Length = 144
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 72/112 (64%), Gaps = 11/112 (9%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + I+ +K+D+VSR+ +S + + LDVNSELYP V + MA
Sbjct: 1 MSDPLLFEDTFTITAINQ--QKYDRVSRLSCNSTDTLSHFTLDVNSELYPCVVNESLNMA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGSGK 106
LA TL+LDG D+G + G R +TLA+ Y+Y+ HGK+++ +EGS +
Sbjct: 59 LASTLSLDGKDDSG--SKGWREVGMGEQTLANDYDYVCHGKVYRF-EEGSSQ 107
>gi|67515821|ref|XP_657796.1| hypothetical protein AN0192.2 [Aspergillus nidulans FGSC A4]
gi|40746909|gb|EAA66065.1| hypothetical protein AN0192.2 [Aspergillus nidulans FGSC A4]
Length = 128
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 6/103 (5%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F V ++ + K+D+VSR+ S + LD+NSELYP G+ +MA
Sbjct: 1 MSDPLLFEDTFTVTGVNQE--KYDRVSRLTCTSSDSQTTFTLDINSELYPCTTGESLSMA 58
Query: 61 LAHTLNLDGTPD---TGYYTPG-ARKTLADKYEYIMHGKLFKI 99
LA TL+LDG D TG+ G +TLA+ Y+Y+ HGK+++
Sbjct: 59 LASTLSLDGKEDGAKTGWREVGMGEQTLANDYDYVCHGKVYRF 101
>gi|342321291|gb|EGU13225.1| RNA polymerase I [Rhodotorula glutinis ATCC 204091]
Length = 147
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 70/114 (61%), Gaps = 12/114 (10%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ ++F D+F V +D KVSRI A SQN DM M LD+N++L +R +F++AL
Sbjct: 7 SSAIIFTDVFNVSDVD-------KVSRIAAKSQNHDMRMTLDINTDLIDLRQESEFSLAL 59
Query: 62 AHTLNLDGTPDTGYYTPGARK----TLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
A TL+ DG T G R LAD ++Y+M+GK++K DEGSG+ + AY
Sbjct: 60 ASTLHPDGVAKDAGATGGWRADIEGGLADDWDYVMYGKVYKY-DEGSGEEVTAY 112
>gi|259489599|tpe|CBF90004.1| TPA: DNA-directed RNA polymerases i, ii, and iii 145 kDa
polypeptide (AFU_orthologue; AFUA_5G11120) [Aspergillus
nidulans FGSC A4]
Length = 145
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 6/103 (5%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F V ++ + K+D+VSR+ S + LD+NSELYP G+ +MA
Sbjct: 1 MSDPLLFEDTFTVTGVNQE--KYDRVSRLTCTSSDSQTTFTLDINSELYPCTTGESLSMA 58
Query: 61 LAHTLNLDGTPD---TGYYTPG-ARKTLADKYEYIMHGKLFKI 99
LA TL+LDG D TG+ G +TLA+ Y+Y+ HGK+++
Sbjct: 59 LASTLSLDGKEDGAKTGWREVGMGEQTLANDYDYVCHGKVYRF 101
>gi|119479105|ref|XP_001259581.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Neosartorya fischeri NRRL 181]
gi|119407735|gb|EAW17684.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Neosartorya fischeri NRRL 181]
Length = 145
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + I+ +K+D+VSR+ S + LD+NSELYP VG+ +MA
Sbjct: 1 MSDPLLFEDTFTITAIN--SQKYDRVSRLTCTSSDSMTTFTLDINSELYPCAVGESVSMA 58
Query: 61 LAHTLNLDGTPDTG----YYTPGA-RKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
LA TL+LDG TG + GA +TLA+ Y+Y+ HGK+++ + + ++ +
Sbjct: 59 LASTLSLDGKEATGAKASWREVGAGEQTLANDYDYVCHGKVYRFEEAATQGNMAVF 114
>gi|317147448|ref|XP_003189921.1| UDP-glucose 4-epimerase Gal10 [Aspergillus oryzae RIB40]
Length = 110
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 70/110 (63%), Gaps = 11/110 (10%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + ++ +K+D+VSR+ S + LDVN+ELYP G+ +MA
Sbjct: 1 MSDPLLFEDTFTITGVNQ--QKYDRVSRLTCTSTDHSSTFTLDVNTELYPCTTGESVSMA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGS 104
LA TL+LDG DTG + G R +TLA+ Y+Y+ HGK+++ +EG+
Sbjct: 59 LASTLSLDGKEDTG--SKGWREVGMGEQTLANDYDYVCHGKVYRF-EEGT 105
>gi|115401436|ref|XP_001216306.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114190247|gb|EAU31947.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 145
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 70/109 (64%), Gaps = 8/109 (7%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ VLFED F + I+ +K+D+VSR+ S + LDVN+ELYP VG+ +MA
Sbjct: 1 MSDPVLFEDTFTITAIN--AQKYDRVSRLTCTSSDNFTTFTLDVNTELYPCAVGESLSMA 58
Query: 61 LAHTLNLDGTPDT----GYYTPG-ARKTLADKYEYIMHGKLFKIGDEGS 104
+A TL+LDG D+ G+ G ++LA+ Y+Y+ HGK+++ +EGS
Sbjct: 59 IASTLSLDGKEDSGTKVGWREVGMGEQSLANDYDYVCHGKVYRF-EEGS 106
>gi|70997587|ref|XP_753536.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Aspergillus fumigatus Af293]
gi|66851172|gb|EAL91498.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Aspergillus fumigatus Af293]
gi|159126732|gb|EDP51848.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Aspergillus fumigatus A1163]
Length = 145
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LF+D F + I+ +K+D+VSR+ S + LD+NSELYP VG+ +MA
Sbjct: 1 MSDPLLFDDTFTITAIN--SQKYDRVSRLSCTSSDSVTTFTLDINSELYPCAVGESVSMA 58
Query: 61 LAHTLNLDGTPDTG----YYTPGA-RKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
LA TL+LDG TG + GA +TLA+ Y+Y+ HGK+++ + + ++ +
Sbjct: 59 LASTLSLDGKEATGAKASWREVGAGEQTLANDYDYVCHGKVYRFEEAATQGNMAVF 114
>gi|317147446|ref|XP_003189920.1| UDP-glucose 4-epimerase Gal10 [Aspergillus oryzae RIB40]
Length = 144
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 70/110 (63%), Gaps = 11/110 (10%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + ++ +K+D+VSR+ S + LDVN+ELYP G+ +MA
Sbjct: 1 MSDPLLFEDTFTITGVNQ--QKYDRVSRLTCTSTDHSSTFTLDVNTELYPCTTGESVSMA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGS 104
LA TL+LDG DTG + G R +TLA+ Y+Y+ HGK+++ +EG+
Sbjct: 59 LASTLSLDGKEDTG--SKGWREVGMGEQTLANDYDYVCHGKVYRF-EEGT 105
>gi|440639238|gb|ELR09157.1| hypothetical protein GMDG_03735 [Geomyces destructans 20631-21]
Length = 151
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 9/117 (7%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ LF++ F + D K+D+VSRI A SQ+ LD+N+EL+P VG+ M L
Sbjct: 6 SDSQLFDEHFTITA--SDQSKYDRVSRISATSQDSQTTFALDINTELFPCAVGEPLHMVL 63
Query: 62 AHTLNLDGTP-------DTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
A TL+LDG+ D G G TLAD ++Y+ HGK++K D G +K Y
Sbjct: 64 ASTLSLDGSKDDNKGWRDVGRSGQGGEATLADLFDYVCHGKIYKFEDGDDGNIIKCY 120
>gi|449019984|dbj|BAM83386.1| RNA polymerase I, II, III common subunit [Cyanidioschyzon merolae
strain 10D]
Length = 156
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 13/115 (11%)
Query: 6 LFEDIFVVEKID-----PDG--------KKFDKVSRIEAHSQNCDMYMLLDVNSELYPMR 52
+ ED F+ +++D P KKFD+VSR+ A S M + LDV+S+L+P+R
Sbjct: 4 ILEDTFICQEVDMVYKDPRNPALGKVREKKFDRVSRLVAESLQQRMRLTLDVHSQLFPVR 63
Query: 53 VGDKFTMALAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKS 107
GD+F + L ++ LDG P G Y T+ ++Y+Y+M GK+F EG+ +S
Sbjct: 64 AGDRFLLVLMSSVRLDGAPCDGTYDQSGAPTVINRYDYVMCGKVFHQESEGAHQS 118
>gi|242762372|ref|XP_002340364.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Talaromyces stipitatus ATCC 10500]
gi|218723560|gb|EED22977.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Talaromyces stipitatus ATCC 10500]
Length = 146
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 68/110 (61%), Gaps = 9/110 (8%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ LFED F + I+ +K+D+VSRI S + LD+N+ELYP VG+ +MA
Sbjct: 1 MSDSQLFEDTFTITSINS--QKYDRVSRISCTSTDNLTTFTLDINTELYPCAVGESLSMA 58
Query: 61 LAHTLNLDGTPDTGYYTPGARK------TLADKYEYIMHGKLFKIGDEGS 104
LA TL+LDG + + G R TLA++Y+Y+ HGK+++ +EGS
Sbjct: 59 LASTLSLDGKDEDNAASRGWRDVGMGEHTLANEYDYVCHGKVYRF-EEGS 107
>gi|156049537|ref|XP_001590735.1| UDP-glucose 4-epimerase Gal10 [Sclerotinia sclerotiorum 1980]
gi|154692874|gb|EDN92612.1| UDP-glucose 4-epimerase Gal10 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 151
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 70/114 (61%), Gaps = 10/114 (8%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQ-NCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
LF++ F V ++D KK+ +V RI+A S + + MLLD+N+ELYP+ VGD + LA +
Sbjct: 9 LFDEHFTVNELDH--KKYVRVGRIKATSTVDHSVSMLLDINTELYPLAVGDNIRVVLATS 66
Query: 65 LNLDGTPDTG-------YYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
LNLDGT D G G TLAD ++Y+ HGK++K D+ + +KAY
Sbjct: 67 LNLDGTKDDGKGWRDANRMGLGGEATLADMFDYVCHGKIYKFEDQENSDLIKAY 120
>gi|121713590|ref|XP_001274406.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Aspergillus clavatus NRRL 1]
gi|119402559|gb|EAW12980.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Aspergillus clavatus NRRL 1]
Length = 145
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 71/116 (61%), Gaps = 7/116 (6%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + I+ +K+D+VSR+ S + LDVN+ELYP VG+ +MA
Sbjct: 1 MSDPLLFEDTFTITGIN--AQKYDRVSRLTCTSSDSLTTFTLDVNTELYPCSVGESLSMA 58
Query: 61 LAHTLNLDGTPDTG----YYTPGARK-TLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
LA TL+LDG TG + GA + TLA+ Y+Y+ HGK+++ + + ++ +
Sbjct: 59 LASTLSLDGKEATGGKASWREVGAGELTLANDYDYVCHGKVYRFEEAATQGNMAVF 114
>gi|50555592|ref|XP_505204.1| YALI0F09383p [Yarrowia lipolytica]
gi|49651074|emb|CAG78011.1| YALI0F09383p [Yarrowia lipolytica CLIB122]
Length = 139
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 68/108 (62%), Gaps = 5/108 (4%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCD-MYMLLDVNSELYPMRVGDKFTMALAHT 64
LFED F +D ++D+VSRI A S N D +++ LDVN+EL+PM GD T+ALA
Sbjct: 4 LFEDSFKTTSVD--SARYDRVSRITAQSLNHDDIHLTLDVNTELFPMSKGDVVTVALASQ 61
Query: 65 LNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
L T +G+ P K+LAD Y+Y+M+G ++K +EGSG+ + Y
Sbjct: 62 LTDKETTYSGWREPKVGEKSLADDYDYVMYGTVYKF-EEGSGEKVAVY 108
>gi|398391933|ref|XP_003849426.1| hypothetical protein MYCGRDRAFT_47713 [Zymoseptoria tritici IPO323]
gi|339469303|gb|EGP84402.1| hypothetical protein MYCGRDRAFT_47713 [Zymoseptoria tritici IPO323]
Length = 142
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 67/113 (59%), Gaps = 4/113 (3%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ L+E+ F V + + +D+V R+ SQ+ LD+N ELYP+ G+ F+M
Sbjct: 1 MSDAQLYEEAFNVNTLLD--QAYDRVHRVIGTSQDSSTSYTLDINCELYPLVAGETFSML 58
Query: 61 LAHTLNLDGTPD--TGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
LA TLNLDGT D G+ TLAD ++Y+ +GK++K+ D G ++K Y
Sbjct: 59 LASTLNLDGTKDEGQGWRGKSTGSTLADLWDYVCYGKVYKVEDPEDGDNIKVY 111
>gi|255713772|ref|XP_002553168.1| KLTH0D10538p [Lachancea thermotolerans]
gi|238934548|emb|CAR22730.1| KLTH0D10538p [Lachancea thermotolerans CBS 6340]
Length = 144
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 71/110 (64%), Gaps = 8/110 (7%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LF+DIF V ++D +++KVSRIEAHS + + + +D+N+EL+P+RV D T+ L+ TL
Sbjct: 5 LFDDIFQVTEVDL--GRYNKVSRIEAHSTSQEFLLTVDINTELFPVRVNDTLTVMLSSTL 62
Query: 66 NLDG--TPDTGYY---TPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
++DG T G + PG R +LAD Y+Y+M+G ++ + K L A
Sbjct: 63 SIDGSETVQGGSWRAPQPGER-SLADDYDYVMYGTAYRFEEVAGKKDLIA 111
>gi|238496015|ref|XP_002379243.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Aspergillus flavus NRRL3357]
gi|220694123|gb|EED50467.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Aspergillus flavus NRRL3357]
Length = 144
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 70/110 (63%), Gaps = 11/110 (10%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + ++ +K+D+VSR+ S + LDVN+ELYP G+ +M+
Sbjct: 1 MSDPLLFEDTFTITGVNQ--QKYDRVSRLTCTSTDHSSTFTLDVNTELYPCTTGESVSMS 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGS 104
LA TL+LDG DTG + G R +TLA+ Y+Y+ HGK+++ +EG+
Sbjct: 59 LASTLSLDGKEDTG--SKGWREVGMGEQTLANDYDYVCHGKVYRF-EEGT 105
>gi|212529726|ref|XP_002145020.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Talaromyces marneffei ATCC 18224]
gi|210074418|gb|EEA28505.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Talaromyces marneffei ATCC 18224]
Length = 147
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 67/111 (60%), Gaps = 10/111 (9%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ LFED F + I+ +K+D+VSRI S + LDVN+ELYP VG+ +MA
Sbjct: 1 MSDAQLFEDTFTITSINS--QKYDRVSRISCTSTDNLTTFTLDVNTELYPCAVGESLSMA 58
Query: 61 LAHTLNLDGTPDTGYYTPGARK-------TLADKYEYIMHGKLFKIGDEGS 104
LA TL+LDG + G + TLA++Y+Y+ HGK+++ +EGS
Sbjct: 59 LASTLSLDGKDEDASAGRGGWRDVGMGEHTLANEYDYVCHGKVYRF-EEGS 108
>gi|389635227|ref|XP_003715266.1| UDP-glucose 4-epimerase Gal10 [Magnaporthe oryzae 70-15]
gi|351647599|gb|EHA55459.1| UDP-glucose 4-epimerase Gal10 [Magnaporthe oryzae 70-15]
gi|440466170|gb|ELQ35452.1| UDP-glucose 4-epimerase Gal10 [Magnaporthe oryzae Y34]
gi|440480659|gb|ELQ61312.1| UDP-glucose 4-epimerase Gal10 [Magnaporthe oryzae P131]
Length = 155
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 72/118 (61%), Gaps = 10/118 (8%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCD--MYMLLDVNSELYPMRVGDKFTM 59
S+ LFE +F V +++ +K+D+V+RI A S M M LD+N+EL+PM G+ F +
Sbjct: 6 SDAQLFEGVFKVTEVNQ--QKYDRVARIWARSDASTDLMDMTLDINTELFPMSEGEVFRV 63
Query: 60 ALAHTLNLDGTPD---TGYYTP---GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
LA +L+LDG+ D G+ G TLAD ++Y+ HGK++K D G ++KAY
Sbjct: 64 VLATSLSLDGSKDDDKAGWRDATKLGGPATLADSFDYVCHGKIYKFEDSEDGDNIKAY 121
>gi|320591381|gb|EFX03820.1| DNA-directed RNA polymerases and 3 polypeptide [Grosmannia
clavigera kw1407]
Length = 153
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 11/115 (9%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFED F + +D K+D+V+RI S + + LD+N+EL+P G+ T+ LA TL
Sbjct: 10 LFEDSFTITNVDQ--SKYDQVARIYGTSADAQTVISLDINTELFPCVTGENLTVVLATTL 67
Query: 66 NLDGT--PDTGYY---TPGAR----KTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+LDG+ D G+ PGA +LAD Y+Y+ HGK++K D G+++KAY
Sbjct: 68 SLDGSRDDDKGWRDLTKPGAAGAGDTSLADMYDYVCHGKIYKFEDGEDGQTIKAY 122
>gi|154286130|ref|XP_001543860.1| DNA-directed RNA polymerases i [Ajellomyces capsulatus NAm1]
gi|150407501|gb|EDN03042.1| DNA-directed RNA polymerases i [Ajellomyces capsulatus NAm1]
Length = 129
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 70/117 (59%), Gaps = 8/117 (6%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ VLFED F + I+ +K+D+V+RI S + LDVN+ELYP+ +G+ ++A
Sbjct: 1 MSDPVLFEDTFTITAINA--QKYDRVARINCTSSDNLTTFTLDVNTELYPVAMGESLSLA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
LA TL LDG D+ R +TLA+ Y+Y+ HGK+++ + + +++ +
Sbjct: 59 LASTLALDGKDDSAGGRGAWRDVGMGDQTLANDYDYVCHGKVYRFEEGNTAENMSVF 115
>gi|302698417|ref|XP_003038887.1| hypothetical protein SCHCODRAFT_64989 [Schizophyllum commune H4-8]
gi|300112584|gb|EFJ03985.1| hypothetical protein SCHCODRAFT_64989 [Schizophyllum commune H4-8]
Length = 156
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 73/123 (59%), Gaps = 12/123 (9%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ ++F+DIF VE ID GKKFD+VSR+ + S+N +M + LD N EL+P+ GD +AL
Sbjct: 5 SSNIIFDDIFAVEDIDRAGKKFDRVSRLWSKSKNYEMELELDYNIELFPLSKGDHVAVAL 64
Query: 62 AHTLNLD--GTPDTG-------YYTPG--ARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
A +L+ + G G + PG A L + Y+Y+M GK++K DE +G+
Sbjct: 65 ASSLSREPVGVAAEGEEADNKNTWRPGISANPGLEEDYDYVMFGKIYKY-DESTGERSTV 123
Query: 111 YET 113
Y +
Sbjct: 124 YAS 126
>gi|261201922|ref|XP_002628175.1| UDP-glucose 4-epimerase Gal10 [Ajellomyces dermatitidis SLH14081]
gi|239590272|gb|EEQ72853.1| UDP-glucose 4-epimerase Gal10 [Ajellomyces dermatitidis SLH14081]
gi|239611985|gb|EEQ88972.1| UDP-glucose 4-epimerase Gal10 [Ajellomyces dermatitidis ER-3]
gi|327353449|gb|EGE82306.1| DNA-directed RNA polymerase I [Ajellomyces dermatitidis ATCC 18188]
Length = 146
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 69/117 (58%), Gaps = 8/117 (6%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ VLFED F + I+ +K+D+V+RI S + LDVN+ELYP+ G+ ++A
Sbjct: 1 MSDPVLFEDTFTITSIN--AQKYDRVARISCTSSDNLTTFTLDVNTELYPVSTGESLSLA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
LA TL LDG D+ R +TLA+ Y+Y+ HGK+++ + + +++ +
Sbjct: 59 LASTLALDGKDDSAGGKGAWRDVGMGEQTLANDYDYVCHGKVYRFEEGNTAENMSVF 115
>gi|225558381|gb|EEH06665.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus G186AR]
gi|240274811|gb|EER38326.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus H143]
gi|325094163|gb|EGC47473.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus H88]
Length = 114
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 8/114 (7%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ VLFED F + I+ +K+D+V+RI S + LDVN+ELYP+ +G+ ++A
Sbjct: 1 MSDPVLFEDTFTITAINA--QKYDRVARISCTSSDNLTTFTLDVNTELYPVAMGESLSLA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGSGKSL 108
LA TL LDG D+ R +TLA+ Y+Y+ HGK+++ + + +++
Sbjct: 59 LASTLALDGKDDSAGGRGAWRDVGMGEQTLANDYDYVCHGKVYRFEEGNTAENM 112
>gi|45185797|ref|NP_983513.1| ACR111Cp [Ashbya gossypii ATCC 10895]
gi|44981552|gb|AAS51337.1| ACR111Cp [Ashbya gossypii ATCC 10895]
gi|374106720|gb|AEY95629.1| FACR111Cp [Ashbya gossypii FDAG1]
Length = 144
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 72/111 (64%), Gaps = 8/111 (7%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTMALAH 63
LF+DIF ++++D +++KVSRIEA S + D L LDVN+EL+P++ + T+ LA
Sbjct: 4 TLFDDIFTIQEVDQ--GRYNKVSRIEAISTSQDTCKLTLDVNTELFPLQPQQQLTVMLAT 61
Query: 64 TLNLDGTPDT-GYY---TPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
TLNLDGT D+ G + PGAR +LAD ++Y+ +G +K + K + A
Sbjct: 62 TLNLDGTEDSHGSWRPPAPGAR-SLADDFDYVTYGTAYKFEEANGNKDMLA 111
>gi|396465184|ref|XP_003837200.1| similar to DNA-directed RNA polymerases i [Leptosphaeria maculans
JN3]
gi|312213758|emb|CBX93760.1| similar to DNA-directed RNA polymerases i [Leptosphaeria maculans
JN3]
Length = 146
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 74/119 (62%), Gaps = 9/119 (7%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ +FE+ F + I+ +K+D+VSRI +S + + M LD+N EL+P+RVGD M
Sbjct: 1 MADAQVFEETFSITSIN--NEKYDRVSRIYGNSTDNQITMTLDINHELFPVRVGDTLNMV 58
Query: 61 LAHTLNLDGTP----DTGYYTPGAR--KTLADKYEYIMHGKLFKIGDEGSGKSLKAYET 113
LA TL+LDG +T + G + TLAD Y+Y+ +GK +++ D G G ++K Y +
Sbjct: 59 LATTLSLDGATKDQNETMWRNVGRQGVTTLADMYDYVCYGKHYRMED-GEGDTMKYYAS 116
>gi|171690722|ref|XP_001910286.1| hypothetical protein [Podospora anserina S mat+]
gi|170945309|emb|CAP71421.1| unnamed protein product [Podospora anserina S mat+]
Length = 209
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 73/116 (62%), Gaps = 8/116 (6%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ LFED F V K+ KK+D+V RI A S++ + + LD+N+EL+P + GD+ M +
Sbjct: 64 SDAQLFEDNFRVHKLS--DKKYDRVDRIYATSEDKSIEITLDINNELFPCKEGDELNMLI 121
Query: 62 AHTLNLDGTPD--TGYY----TPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
A +L+ DGT D G+ + +LAD+Y+Y+ +GK++K D G+++KAY
Sbjct: 122 ATSLHYDGTKDDERGWRDVAKMGASEGSLADQYDYVCYGKIYKFEDGEDGQTIKAY 177
>gi|164657193|ref|XP_001729723.1| hypothetical protein MGL_3267 [Malassezia globosa CBS 7966]
gi|159103616|gb|EDP42509.1| hypothetical protein MGL_3267 [Malassezia globosa CBS 7966]
Length = 147
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS LF+ FVV+ IDPDGKKFD+VSR+ A S DM + LD+ +++YP+ VG +
Sbjct: 1 MSTNSLFDTQFVVKDIDPDGKKFDRVSRVIASSPTLDMTLSLDIATDIYPVHVGQQLAFL 60
Query: 61 LAHTLNLDGTPDTGYYTPGARK------TLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
L +L D A + +LA ++Y+M+GK+FK DE S + + Y
Sbjct: 61 LVSSLRRDKAESDATADRDAWRLDQDDNSLAKGFDYVMYGKIFKY-DERSTEQVTVY 116
>gi|405122250|gb|AFR97017.1| DNA-directed RNA polymerase I [Cryptococcus neoformans var. grubii
H99]
Length = 165
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 69/125 (55%), Gaps = 19/125 (15%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ ++F+D F V+ +D DGKKFD+VSRI A S + M + LD+ +ELYP+ + FT+ L
Sbjct: 4 SSNIIFDDRFTVDTVDKDGKKFDRVSRITATSHSLSMSLTLDIANELYPVEQSETFTLTL 63
Query: 62 AHTL------NLDGTP--DTGYYTPGARKT-----------LADKYEYIMHGKLFKIGDE 102
A +L LD D G R+ LA+ Y+Y+M+GK++K D
Sbjct: 64 ARSLVPSELEALDNNAGGDEGEDGSEVRRVKRELWRSNEQGLAEDYDYVMYGKIYKFDDS 123
Query: 103 GSGKS 107
G++
Sbjct: 124 AQGEA 128
>gi|154317637|ref|XP_001558138.1| hypothetical protein BC1G_03170 [Botryotinia fuckeliana B05.10]
gi|347837490|emb|CCD52062.1| similar to DNA-directed RNA polymerases i [Botryotinia fuckeliana]
Length = 151
Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 70/114 (61%), Gaps = 10/114 (8%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQ-NCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
LF++ F V ++D KK+ +V RI+A S + + MLLD+N+EL+P+ VGD + LA +
Sbjct: 9 LFDEHFTVNELDH--KKYVRVGRIKATSTVDHSVSMLLDINTELFPLAVGDNIRVVLATS 66
Query: 65 LNLDGTPDTG-------YYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
LNLDGT D G G +LAD ++Y+ HGK++K D+ + +KAY
Sbjct: 67 LNLDGTKDDGKGWRDANRMGLGGEASLADMFDYVCHGKIYKFEDQENSDLIKAY 120
>gi|336365669|gb|EGN94019.1| hypothetical protein SERLA73DRAFT_189168 [Serpula lacrymans var.
lacrymans S7.3]
gi|336378215|gb|EGO19374.1| hypothetical protein SERLADRAFT_479872 [Serpula lacrymans var.
lacrymans S7.9]
Length = 161
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 73/128 (57%), Gaps = 18/128 (14%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
SNIV F+DIF + ID +GKKFD+VSR+ AHS+N DM + LD N EL+P+ F +AL
Sbjct: 6 SNIV-FDDIFNINAIDKEGKKFDRVSRLYAHSKNYDMDLTLDYNIELFPLAKDQNFALAL 64
Query: 62 AHTLN--------------LDGTPDTGYYTPGARKT--LADKYEYIMHGKLFKIGDEGSG 105
A +L+ + + P A++ L D Y Y+M+GK++K D G+
Sbjct: 65 ATSLSRDGGGAGAGADGADDSEGKERDLWRPDAKRQGGLDDDYGYVMYGKVYKF-DGGTA 123
Query: 106 KSLKAYET 113
+ + AY +
Sbjct: 124 EVVTAYAS 131
>gi|320580973|gb|EFW95195.1| RNA polymerase subunit ABC14.5 [Ogataea parapolymorpha DL-1]
Length = 148
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 71/117 (60%), Gaps = 13/117 (11%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHS-QNCDMYMLLDVNSELYPMRVGDKFTMALAH 63
LF+DIF V+ +D ++DKVSRI A+S + D + LD+N+EL+P+ GD ++ LA
Sbjct: 4 TLFDDIFSVQSLD--SARYDKVSRIIANSTSSADTKLTLDINTELFPVSTGDSLSVTLAK 61
Query: 64 TLNLDGTPD-------TGYYTP--GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+L L+G D G + P +++L D+Y+Y+MHG ++K +EG ++ Y
Sbjct: 62 SLALEGAEDDQSMFSTNGSWRPPKPGQRSLMDEYDYVMHGTVYKF-EEGKDDNISVY 117
>gi|226293976|gb|EEH49396.1| DNA-directed RNA polymerases i [Paracoccidioides brasiliensis Pb18]
Length = 146
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 9/110 (8%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ VLFED F V I+ +K+D+V+RI S + LDVN+ELYP+ G+ ++A
Sbjct: 1 MSDPVLFEDTFTVTAIND--QKYDRVARISCTSSDNLTIFTLDVNTELYPVATGETLSLA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGS 104
LA TL LDG D+ R +TLA+ Y+Y+ HGK+++ +EG+
Sbjct: 59 LASTLALDGKDDSAGGKGAWRDVSMGEQTLANDYDYVCHGKVYRF-EEGN 107
>gi|402079717|gb|EJT74982.1| UDP-glucose 4-epimerase Gal10 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 155
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 68/114 (59%), Gaps = 10/114 (8%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCD---MYMLLDVNSELYPMRVGDKFTMALA 62
LFE +F V +D K+D+V+RI A S M M LD+N+EL+PM GD F + LA
Sbjct: 10 LFEGVFKVTHVD--AVKYDRVARITATSDAASADPMDMTLDINTELFPMSEGDGFRVVLA 67
Query: 63 HTLNLDGTPD--TGYYTP---GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+L LDG+ D G+ G TLAD ++Y+ +GK+++ D +G+ +KAY
Sbjct: 68 TSLALDGSKDEEKGWRDASKLGGPPTLADNFDYVCYGKVYRFEDSKNGEQIKAY 121
>gi|260946845|ref|XP_002617720.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238849574|gb|EEQ39038.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 148
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 7/112 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNC-DMYMLLDVNSELYPMRVGDKFTMALAH 63
+LFED+F VE ID +++KVSRIEA S D+ + LD+N EL+P++ D T+ALA
Sbjct: 4 ILFEDMFNVESID--NARYNKVSRIEAQSSTSQDIKITLDINRELFPVKDNDSLTIALAS 61
Query: 64 TLNLDGT--PDTGYYTPGAR--KTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+L + + G + P R ++LAD Y+Y+M+G ++K + + Y
Sbjct: 62 SLGNESSMLTSNGSWRPPKRGDRSLADDYDYVMYGTVYKFEESSDNDKMAVY 113
>gi|402221880|gb|EJU01948.1| RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 161
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 17/120 (14%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
+ V FED+F + +DP+GKK+D+VSR+ A S DM ++LD + E++P+R G+ T+ LA
Sbjct: 12 SAVTFEDVFTIHSLDPEGKKYDRVSRLFARSHAFDMDLVLDFHCEIFPLREGETVTVVLA 71
Query: 63 HTLNLDGTPDTGYYTPGARKTLA-----------DKYEYIMHGKLFKIGDEGSGKSLKAY 111
+L Y P +K LA + ++Y+ +GK+++ DEG G+ + AY
Sbjct: 72 KSLQ-----KGLYEEPEEKKELASWRVDGPVGLEEYFDYVCYGKVYRF-DEGVGEKVTAY 125
>gi|295670167|ref|XP_002795631.1| DNA-directed RNA polymerases I [Paracoccidioides sp. 'lutzii' Pb01]
gi|225684342|gb|EEH22626.1| DNA-directed RNA polymerases i [Paracoccidioides brasiliensis Pb03]
gi|226284716|gb|EEH40282.1| DNA-directed RNA polymerases I [Paracoccidioides sp. 'lutzii' Pb01]
Length = 146
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 67/110 (60%), Gaps = 9/110 (8%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ VLFED F + I+ +K+D+V+RI S + LDVN+ELYP+ G+ ++A
Sbjct: 1 MSDPVLFEDTFTITAIND--QKYDRVARISCTSSDNLTIFTLDVNTELYPVATGETLSLA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGS 104
LA TL LDG D+ R +TLA+ Y+Y+ HGK+++ +EG+
Sbjct: 59 LASTLALDGKDDSAGGKGAWRDVSMGEQTLANDYDYVCHGKVYRF-EEGN 107
>gi|395536685|ref|XP_003770342.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 [Sarcophilus harrisii]
Length = 180
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 65/95 (68%), Gaps = 5/95 (5%)
Query: 22 KFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTP-GA 80
+ ++VSR+ S++ M ++LDVN ++YP+ +GDKF + +A TL DGT D G Y P
Sbjct: 51 RQNRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTLDDGEYNPTDD 110
Query: 81 RKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
R + AD++EY+M+GK+++I GDE S ++ L AY
Sbjct: 111 RPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAY 145
>gi|302406709|ref|XP_003001190.1| DNA-directed RNA polymerases I [Verticillium albo-atrum VaMs.102]
gi|261359697|gb|EEY22125.1| DNA-directed RNA polymerases I [Verticillium albo-atrum VaMs.102]
gi|346977349|gb|EGY20801.1| DNA-directed RNA polymerases I [Verticillium dahliae VdLs.17]
Length = 152
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 65/117 (55%), Gaps = 10/117 (8%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
++ LFE+ F + D K+D+V+RI A S + M LD+N EL+P V D + LA
Sbjct: 7 DVTLFEESFTITNFDQ--SKYDRVARISATSADNQTVMTLDINIELFPCAVSDNLHVVLA 64
Query: 63 HTLNLDGTPD--TGYYT------PGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+L DG+ D G+ GA TLAD ++Y+ HGK++K D G+ +KAY
Sbjct: 65 TSLAHDGSKDEEKGWRDVAKGSGGGAEATLADMFDYVCHGKIYKFEDADDGQIIKAY 121
>gi|357501005|ref|XP_003620791.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Medicago truncatula]
gi|355495806|gb|AES77009.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Medicago truncatula]
Length = 134
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 77/138 (55%), Gaps = 26/138 (18%)
Query: 5 VLFEDIFVVEKIDPDGKKFDK--------------VSRIEAHSQNCDMYMLLDVNSELYP 50
+LF+D F + ++P+G+K+DK VSRI A S+ M+MLLDVN+E+YP
Sbjct: 4 LLFDDFFKIVDVNPNGEKYDKAPRVLKVASTEIVDVSRIVARSEKHGMHMLLDVNTEIYP 63
Query: 51 MRVGDKFTMALAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKS-LK 109
M +KF +AL+ +L L+ T ++ +K+EYIM+G+L+ I +G +S +
Sbjct: 64 MDRKEKFLLALSPSLVLN--------TKDGPVSIQEKFEYIMYGRLYDIKADGLSRSPPE 115
Query: 110 AYETTTQSI---HYYFIW 124
Y + I YYFI
Sbjct: 116 VYVNASHVILLYLYYFIL 133
>gi|403340621|gb|EJY69601.1| DNA-directed RNA polymerase II, 16.5 kDa polypeptide [Oxytricha
trifallax]
Length = 151
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 62/107 (57%), Gaps = 9/107 (8%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M + +D V I+ DGK F+KVSRIEA S+ + + LDVN+++YPM + M
Sbjct: 1 MDRAKIIDDTIQVININRDGKFFEKVSRIEAKSEVNKLEVQLDVNTDIYPMEKDAYYAMC 60
Query: 61 LAHTLNLDGTPDTGYYT---------PGARKTLADKYEYIMHGKLFK 98
+A ++N DG+ + + P + +L D+YEY+MHGK+FK
Sbjct: 61 IASSINTDGSEEFDIFRYQSEGSVAGPDGQGSLLDQYEYVMHGKVFK 107
>gi|452838764|gb|EME40704.1| hypothetical protein DOTSEDRAFT_47000 [Dothistroma septosporum
NZE10]
Length = 144
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 6/115 (5%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ L+E+ F ++ + +D+V RI +S + LDVNSELYP+ + F M
Sbjct: 1 MADAQLYEESFAATQVLD--QTYDRVHRILGNSHDNATSFTLDVNSELYPIAANESFQML 58
Query: 61 LAHTLNLDGTPDTGYYTPGARK----TLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+A TLNLDGT D ++ TLAD ++Y+ +GK++++ D G G +K Y
Sbjct: 59 IASTLNLDGTKDEANQGWRGKRDADPTLADMWDYVCYGKVYRVEDVGEGDQIKVY 113
>gi|453081386|gb|EMF09435.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 1429
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 67/114 (58%), Gaps = 6/114 (5%)
Query: 1 MSNIVLFEDIFVVEK-IDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTM 59
M++ L+E+ F V ID + +D+V R+ S + + LD+NSELYP+ G+ F M
Sbjct: 1216 MADAQLYEETFQVTTLID---QTYDRVHRVLGTSHDSTTSITLDINSELYPIGNGESFNM 1272
Query: 60 ALAHTLNLDGTPD--TGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+A TLNLDGT D G+ +LAD ++Y+ +GK++K+ D G +K Y
Sbjct: 1273 LIASTLNLDGTKDEAQGWRPKNDAPSLADMWDYVCYGKVYKVEDPEDGDRIKVY 1326
>gi|58271454|ref|XP_572883.1| DNA-directed RNA polymerases i, ii, and iii 17.1 kda polypeptide
[Cryptococcus neoformans var. neoformans JEC21]
gi|134114998|ref|XP_773797.1| hypothetical protein CNBH2490 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256425|gb|EAL19150.1| hypothetical protein CNBH2490 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229142|gb|AAW45576.1| DNA-directed RNA polymerases i, ii, and iii 17.1 kda polypeptide,
putative [Cryptococcus neoformans var. neoformans JEC21]
Length = 157
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 19/118 (16%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ ++F+D F V+ +D DGKKFD+VSRI A S + M + LD+ +ELYP+ + FT+ L
Sbjct: 4 SSNIIFDDRFTVDTVDKDGKKFDRVSRITATSHSLSMSLTLDIANELYPLEQSETFTLTL 63
Query: 62 AHTL------NLDGTPDTGYYTPGA-------------RKTLADKYEYIMHGKLFKIG 100
A +L LD D G+ + LA+ Y+Y+M+GK+ K G
Sbjct: 64 ARSLVPSELETLDSRADGDEGEEGSEVRRVKRELWRSHEQGLAEDYDYVMYGKVGKGG 121
>gi|344231510|gb|EGV63392.1| RNA polymerase [Candida tenuis ATCC 10573]
Length = 148
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 70/116 (60%), Gaps = 7/116 (6%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNC-DMYMLLDVNSELYPMRVGDKFTM 59
MS+ +LFED+F VE +D +++KV+RI S ++ + LD+NSEL+P+ D T+
Sbjct: 1 MSSSILFEDMFNVESVD--SARYNKVARITGQSSTSQEIKITLDINSELFPVNDNDSLTI 58
Query: 60 ALAHTLNLDGT--PDTGYYTP--GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
ALA TL + + G + P + ++LAD Y+Y+M+G ++K + G+ + Y
Sbjct: 59 ALASTLGNESSMLTSNGSWRPPKPSDRSLADDYDYVMYGTIYKFEESGTTDKMAVY 114
>gi|296815578|ref|XP_002848126.1| DNA-directed RNA polymerase I [Arthroderma otae CBS 113480]
gi|238841151|gb|EEQ30813.1| DNA-directed RNA polymerase I [Arthroderma otae CBS 113480]
Length = 146
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 8/117 (6%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + I+ +K+D+VSRI S + + LDVN+E+YP G+ ++A
Sbjct: 1 MSDPILFEDTFSITSIN--AQKYDRVSRISCTSTDHLITFTLDVNTEIYPCAPGESLSLA 58
Query: 61 LAHTLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
LA TL+LDG + R TLA+ Y+Y+ +GK+++ + G+ ++ +
Sbjct: 59 LASTLSLDGKEEATGERAAWRDVGMGENTLANDYDYVCYGKVYRFEESGTAGNMAVF 115
>gi|340960352|gb|EGS21533.1| DNA-directed RNA polymerases I, II, and III-like protein
[Chaetomium thermophilum var. thermophilum DSM 1495]
Length = 154
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 11/119 (9%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ LFED F VE++ K+D+V RI S + + M LD+N EL+P +V D+ +AL
Sbjct: 6 SDAQLFEDHFRVERLSE--PKYDRVDRIYCKSIDGSIDMSLDINKELFPCKVDDELHVAL 63
Query: 62 AHTLNLDGTPDTGYYTPGAR---------KTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
A +L+ DG D G R TLAD ++Y+ +GK++K D G+++KAY
Sbjct: 64 ASSLHYDGHRDEDETRQGWRDLAKAGSSESTLADMFDYVCYGKIYKFEDAEDGQNIKAY 122
>gi|389751488|gb|EIM92561.1| RNA polymerase [Stereum hirsutum FP-91666 SS1]
Length = 160
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 15/126 (11%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGD------ 55
S+ V+F+DIF VE ID +G+KFD+VSR+ AHS+N DM + LD N EL+P+ G
Sbjct: 6 SSNVVFDDIFTVEDIDREGRKFDRVSRLYAHSKNYDMDLTLDYNIELFPLEKGQTLALAL 65
Query: 56 --KFTMALAHTLNLDGTP----DTGYYTPG--ARKTLADKYEYIMHGKLFKIGDEGSGKS 107
A DG D + P R+ L + Y+Y+M+GK+++ D G+ +
Sbjct: 66 ASSLARGPAGPSGADGAEDEDKDKDVWRPDGKGRRGLEEDYDYVMYGKVYRF-DSGTAEI 124
Query: 108 LKAYET 113
+ AY +
Sbjct: 125 VTAYAS 130
>gi|367022278|ref|XP_003660424.1| hypothetical protein MYCTH_2298731 [Myceliophthora thermophila ATCC
42464]
gi|347007691|gb|AEO55179.1| hypothetical protein MYCTH_2298731 [Myceliophthora thermophila ATCC
42464]
Length = 116
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 70/118 (59%), Gaps = 12/118 (10%)
Query: 1 MSNIV----LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDK 56
MSNI LFED F VE++ K+D+V RI S++ + M LD+N+EL+P + D+
Sbjct: 1 MSNIASDAQLFEDHFRVERLG--NAKYDRVDRIYCQSEDKSITMTLDINNELFPCKPDDE 58
Query: 57 FTMALAHTLNLDGTPDT--GYY----TPGARKTLADKYEYIMHGKLFKIGDEGSGKSL 108
+ALA +LN DG+ D G+ + TLAD ++Y+ +GK++K D GK++
Sbjct: 59 LHVALATSLNYDGSKDNERGWRDVAKAGASDATLADIFDYVCYGKIYKFEDAEDGKTM 116
>gi|449277658|gb|EMC85752.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3, partial
[Columba livia]
Length = 126
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 62/91 (68%), Gaps = 5/91 (5%)
Query: 26 VSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTP-GARKTL 84
VSR+ S++ M ++LDVN ++YP+ +GDKF + +A TL DGT D G Y P R +
Sbjct: 1 VSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTLDDGEYNPTDDRPSR 60
Query: 85 ADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
AD++EY+M+GK+++I GDE S ++ L AY
Sbjct: 61 ADQFEYVMYGKVYRIEGDETSTEAATRLSAY 91
>gi|149238912|ref|XP_001525332.1| DNA-directed RNA polymerases I [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450825|gb|EDK45081.1| DNA-directed RNA polymerases I [Lodderomyces elongisporus NRRL
YB-4239]
Length = 148
Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 67/112 (59%), Gaps = 7/112 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNC-DMYMLLDVNSELYPMRVGDKFTMALAH 63
VLFED FVV+ DP +++KVSRI HS D+ + LD+NSEL+P++ D T+ALA
Sbjct: 4 VLFEDSFVVDSTDP--GRYNKVSRITGHSSTAKDITITLDINSELFPVKENDSLTIALAS 61
Query: 64 TLNLDGT--PDTGYYTP--GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+L + + G + P +++AD ++Y+M+G ++K + + + Y
Sbjct: 62 SLGNESSMLTSNGSWRPPKPEDRSIADDFDYVMYGTVYKFEESSDSEKMSVY 113
>gi|388579709|gb|EIM20030.1| RNA polymerase [Wallemia sebi CBS 633.66]
Length = 141
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 69/112 (61%), Gaps = 4/112 (3%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS ++F+ +F V+ ID DGKKFD+V+R+ A S ++ ++D+ E++ + +KFT+A
Sbjct: 1 MSTSIVFDHLFTVDSIDKDGKKFDRVARVGAISTTPNLNCIIDLPIEIFSLSQNEKFTLA 60
Query: 61 LAHTLNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
L+ +L+ D T + PG + LA YEY+ GK++K DEG + AY
Sbjct: 61 LSTSLSSDN--GTSGWRPGMGNEGLAADYEYVCFGKVYKF-DEGKQEIATAY 109
>gi|363756420|ref|XP_003648426.1| hypothetical protein Ecym_8331 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891626|gb|AET41609.1| Hypothetical protein Ecym_8331 [Eremothecium cymbalariae
DBVPG#7215]
Length = 189
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 69/112 (61%), Gaps = 12/112 (10%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHS---QNCDMYMLLDVNSELYPMRVGDKFTMALA 62
+F+DIF +++ID +++KVSRIEA S ++C + LDVN+EL+P++ + T+ LA
Sbjct: 50 IFDDIFTIQEIDQG--RYNKVSRIEATSTSQESCKL--TLDVNTELFPLKPQQQLTVMLA 105
Query: 63 HTLNLDGTPDTGYY----TPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
TLN G DTG PG R +LAD ++Y+M+G +K + K + A
Sbjct: 106 TTLNASGGEDTGASWRAPVPGTR-SLADDFDYVMYGTAYKFEEAHGNKDMLA 156
>gi|452978597|gb|EME78360.1| hypothetical protein MYCFIDRAFT_37035 [Pseudocercospora fijiensis
CIRAD86]
Length = 143
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 65/114 (57%), Gaps = 5/114 (4%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ L+E+ F + + +D+V R+ S + + LD+NSELYP+ D F M
Sbjct: 1 MADAQLYEETFQCTTLITE--TYDRVHRVLGTSHDNTTSITLDINSELYPIGTQDSFNML 58
Query: 61 LAHTLNLDGTPD---TGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+A TLNLDGT + TG+ +LAD ++Y+ +GK++K+ D G +K Y
Sbjct: 59 IASTLNLDGTKEEAATGWRPRNTEPSLADMWDYVCYGKVYKVEDPEDGDRIKVY 112
>gi|302891497|ref|XP_003044630.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256725555|gb|EEU38917.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 148
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 65/115 (56%), Gaps = 8/115 (6%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
+ LFE+ F V D D K+D+V+RI S + M LD+N EL+P V D + L+
Sbjct: 5 DATLFEESFTV--TDYDQSKYDRVARISCTSSDSQTVMTLDINIELFPCAVSDTLHVVLS 62
Query: 63 HTLNLDGT--PDTGYYTPG----ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
TL+LDG+ + G+ G A T+AD Y+Y+ HGK++K + G S+ AY
Sbjct: 63 TTLSLDGSKEEEKGWRDVGKNGDAPATIADLYDYVCHGKIYKFEETYDGNSINAY 117
>gi|303312733|ref|XP_003066378.1| RNA polymerase Rpb8 family protein [Coccidioides posadasii C735
delta SOWgp]
gi|240106040|gb|EER24233.1| RNA polymerase Rpb8 family protein [Coccidioides posadasii C735
delta SOWgp]
gi|320032247|gb|EFW14202.1| DNA-directed RNA polymerase I [Coccidioides posadasii str.
Silveira]
Length = 146
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 67/121 (55%), Gaps = 16/121 (13%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + I+ +K+D+VSRI S + LDVNSELYP G+ ++A
Sbjct: 1 MSDPILFEDTFTITSIN--AQKYDRVSRISCTSTDQLTTFTLDVNSELYPCAPGESLSLA 58
Query: 61 LAHTLNLDGTPDTGYYTPGARK----------TLADKYEYIMHGKLFKIGDEGSGKSLKA 110
LA TL LDG D G G R TLA+ Y+Y+ +GK+++ D + ++
Sbjct: 59 LASTLALDG-KDEG---AGGRAVWRDVGMGETTLANDYDYVCYGKVYRFEDSSTAGNMAV 114
Query: 111 Y 111
+
Sbjct: 115 F 115
>gi|307177453|gb|EFN66580.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Camponotus floridanus]
Length = 89
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
Query: 26 VSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGARK--T 83
VSR+ S++ M ++LD+NS LYPM +GDKF + LA TL DG PD + P ++ +
Sbjct: 1 VSRLHCESESFKMDLILDINSWLYPMDLGDKFRLVLATTLREDGYPDGNEWNPIEQEGGS 60
Query: 84 LADKYEYIMHGKLFKI-GDEGSGK 106
AD +EY+M GK+++I GDE S +
Sbjct: 61 RADSFEYVMSGKVYRIEGDEASNE 84
>gi|340059011|emb|CCC53382.1| putative RNA polymerase B subunit RPB8 [Trypanosoma vivax Y486]
Length = 149
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 64/108 (59%), Gaps = 4/108 (3%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
V+ ED F + ++PDG + +VSR++ +++ D+ + DVN+E +P+ +GD+ T+ LA++
Sbjct: 6 VILEDAFTITALNPDGVVYKRVSRVQCKNEHGDLTVTSDVNTEEFPLFLGDRLTIMLANS 65
Query: 65 LNLDGTPDTGYYTPGA--RKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
+ L G P T YY R T +Y MHG+++ G E SL+
Sbjct: 66 IELSGQPGTKYYDQSVYHRDTRLQDCDYAMHGRVY--GHEVDESSLEV 111
>gi|410081552|ref|XP_003958355.1| hypothetical protein KAFR_0G01860 [Kazachstania africana CBS 2517]
gi|372464943|emb|CCF59220.1| hypothetical protein KAFR_0G01860 [Kazachstania africana CBS 2517]
Length = 147
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 71/110 (64%), Gaps = 18/110 (16%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHS---QNCDMYMLLDVNSELYPMRVGDKF 57
MSN LF+DIF V ++DP +++KV+RIEA S ++C + LD+N+EL+P++ D+
Sbjct: 1 MSN-TLFDDIFTVSEVDP--GRYNKVARIEATSTTQESCKL--TLDINTELFPVQTTDQL 55
Query: 58 TMALAHTLNLD----GTPDTGYYT-----PGARKTLADKYEYIMHGKLFK 98
T+ +A +LN+D T D+ + PG R ++AD Y+Y+MHG ++
Sbjct: 56 TITIASSLNVDSDSGNTEDSATRSWRPPLPGDR-SIADDYDYVMHGTAYR 104
>gi|126131888|ref|XP_001382469.1| 16-kDa RNA polymerase subunit (common to polymerases I, II and III)
[Scheffersomyces stipitis CBS 6054]
gi|126094294|gb|ABN64440.1| 16-kDa RNA polymerase subunit (common to polymerases I, II and III)
[Scheffersomyces stipitis CBS 6054]
Length = 148
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 65/112 (58%), Gaps = 7/112 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNC-DMYMLLDVNSELYPMRVGDKFTMALAH 63
+LFED+FVVE D +++KVSRI HS D+ + LD+NSEL+P++ D T+ LA
Sbjct: 4 ILFEDMFVVESTD--SGRYNKVSRITGHSSTSQDIKISLDINSELFPVKANDSLTITLAS 61
Query: 64 TLNLDGT--PDTGYYTPGA--RKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+L + + G + P ++LAD Y+Y+M+G ++K + + Y
Sbjct: 62 SLGNESSMLTSNGSWRPPKPDDRSLADDYDYVMYGTVYKFEENADNDKMSVY 113
>gi|50306807|ref|XP_453379.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642513|emb|CAH00475.1| KLLA0D07139p [Kluyveromyces lactis]
Length = 145
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 69/111 (62%), Gaps = 7/111 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTMALAH 63
LF+D+F V+++D +++KVSRIEA S + + L LD+NSEL+P++ D+ + +
Sbjct: 4 ALFDDVFTVQEVDTG--RYNKVSRIEAQSTSQESCKLTLDINSELFPIKTQDQLAVMITT 61
Query: 64 TLNLDGTPD---TGYYTPGA-RKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
+L LDG+ + T + P A ++LAD Y+Y+M+G +K + K L A
Sbjct: 62 SLQLDGSEEPQGTSWRAPPAGTRSLADDYDYVMYGTAYKFEEVKGNKDLLA 112
>gi|452002947|gb|EMD95404.1| hypothetical protein COCHEDRAFT_1088735 [Cochliobolus
heterostrophus C5]
Length = 146
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 74/119 (62%), Gaps = 9/119 (7%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ +FE+ F + I+ + K+D+VSRI S + + M LD+N EL+P+ VG+ T+
Sbjct: 1 MADAQVFEETFNITSINNE--KYDRVSRIYGTSTDSQITMTLDINHELFPVTVGESITLV 58
Query: 61 LAHTLNLDGTP----DTGYYTPGAR--KTLADKYEYIMHGKLFKIGDEGSGKSLKAYET 113
LA TL LDG+ DT + G + TLAD Y+Y+ +GK +++ + G+G ++K + +
Sbjct: 59 LATTLALDGSSKGENDTMWRNVGKQGVATLADMYDYVCYGKNYRM-EGGNGDTIKYFAS 116
>gi|290981425|ref|XP_002673431.1| predicted protein [Naegleria gruberi]
gi|284087014|gb|EFC40687.1| predicted protein [Naegleria gruberi]
Length = 156
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 69/105 (65%), Gaps = 11/105 (10%)
Query: 4 IVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAH 63
+VL + F V+ IDP+GKKFDKVSR+ S++ +M +++D+N++++P+ + DK T++LA
Sbjct: 7 VVLEDKFFEVKNIDPEGKKFDKVSRLYCESED-EMELIIDINTDIFPVEINDKLTISLAT 65
Query: 64 TLNL--------DGTPDTGYYTPGA--RKTLADKYEYIMHGKLFK 98
+L + T DT T G + +L D Y+Y+M+G+++K
Sbjct: 66 SLEIKPSKQVDSKKTKDTYDPTLGTDDKPSLMDNYDYVMYGRVYK 110
>gi|146420491|ref|XP_001486201.1| hypothetical protein PGUG_01872 [Meyerozyma guilliermondii ATCC
6260]
gi|146389616|gb|EDK37774.1| hypothetical protein PGUG_01872 [Meyerozyma guilliermondii ATCC
6260]
Length = 148
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 66/112 (58%), Gaps = 7/112 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNC-DMYMLLDVNSELYPMRVGDKFTMALAH 63
+LFED+F VE +D +++KVSRI A S D+ + LD+NSEL+P+R D T+ LA
Sbjct: 4 ILFEDMFNVESVD--SARYNKVSRIIAQSSTSQDIKITLDINSELFPVRDHDSLTITLAS 61
Query: 64 TLNLDGTP--DTGYYTP--GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+L + + +G + P ++LAD Y+Y+M+G ++K + + Y
Sbjct: 62 SLGNEQSQVTSSGSWRPPKAGERSLADDYDYVMYGTVYKFEENAGSDKMSVY 113
>gi|6324798|ref|NP_014867.1| Rpb8p [Saccharomyces cerevisiae S288c]
gi|133340|sp|P20436.1|RPAB3_YEAST RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC3; Short=RNA polymerases I, II, and III subunit
ABC3; AltName: Full=ABC14.4; AltName: Full=ABC14.5;
AltName: Full=DNA-directed RNA polymerases I, II, and
III 14.5 kDa polypeptide
gi|14278329|pdb|1I3Q|H Chain H, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278340|pdb|1I50|H Chain H, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278370|pdb|1I6H|H Chain H, Rna Polymerase Ii Elongation Complex
gi|20150718|pdb|1K83|H Chain H, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749623|pdb|1NIK|H Chain H, Wild Type Rna Polymerase Ii
gi|30749744|pdb|1NT9|H Chain H, Complete 12-Subunit Rna Polymerase Ii
gi|34810560|pdb|1PQV|H Chain H, Rna Polymerase Ii-Tfiis Complex
gi|46015420|pdb|1R5U|H Chain H, Rna Polymerase Ii Tfiib Complex
gi|46015785|pdb|1SFO|H Chain H, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965916|pdb|1R9S|H Chain H, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965928|pdb|1R9T|H Chain H, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966112|pdb|1TWA|H Chain H, Rna Polymerase Ii Complexed With Atp
gi|56966126|pdb|1TWC|H Chain H, Rna Polymerase Ii Complexed With Gtp
gi|56966136|pdb|1TWF|H Chain H, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966146|pdb|1TWG|H Chain H, Rna Polymerase Ii Complexed With Ctp
gi|56966156|pdb|1TWH|H Chain H, Rna Polymerase Ii Complexed With 2'datp
gi|58177171|pdb|1WCM|H Chain H, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679451|pdb|1Y1W|H Chain H, Complete Rna Polymerase Ii Elongation Complex
gi|61679468|pdb|1Y77|H Chain H, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679509|pdb|1Y1V|H Chain H, Refined Rna Polymerase Ii-tfiis Complex
gi|61679522|pdb|1Y1Y|H Chain H, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754250|pdb|2B63|H Chain H, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590861|pdb|2B8K|H Chain H, 12-Subunit Rna Polymerase Ii
gi|122920066|pdb|2E2H|H Chain H, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920081|pdb|2E2I|H Chain H, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920096|pdb|2E2J|H Chain H, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921035|pdb|2NVQ|H Chain H, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921071|pdb|2NVT|H Chain H, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921087|pdb|2NVX|H Chain H, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921102|pdb|2NVY|H Chain H, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921114|pdb|2NVZ|H Chain H, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104681|pdb|2JA5|H Chain H, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104696|pdb|2JA6|H Chain H, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104717|pdb|2JA7|H Chain H, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104729|pdb|2JA7|T Chain T, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104741|pdb|2JA8|H Chain H, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387189|pdb|2YU9|H Chain H, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|157829640|pdb|1A1D|A Chain A, Yeast Rna Polymerase Subunit Rpb8, Nmr, Minimized Average
Structure, Alpha Carbons Only
gi|160877780|pdb|2R7Z|H Chain H, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172234|pdb|2R92|H Chain H, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172247|pdb|2R93|H Chain H, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613469|pdb|2VUM|H Chain H, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368739|pdb|3CQZ|H Chain H, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983597|pdb|3FKI|H Chain H, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781921|pdb|3GTG|H Chain H, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781934|pdb|3GTJ|H Chain H, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781947|pdb|3GTK|H Chain H, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781960|pdb|3GTL|H Chain H, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781973|pdb|3GTM|H Chain H, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781987|pdb|3GTO|H Chain H, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239782000|pdb|3GTP|H Chain H, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782013|pdb|3GTQ|H Chain H, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104518|pdb|3H3V|I Chain I, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839448|pdb|3HOU|H Chain H, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839463|pdb|3HOU|T Chain T, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839478|pdb|3HOV|H Chain H, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839493|pdb|3HOW|H Chain H, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839508|pdb|3HOX|H Chain H, Complete Rna Polymerase Ii Elongation Complex V
gi|254839523|pdb|3HOY|H Chain H, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839538|pdb|3HOZ|H Chain H, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471953|pdb|3I4M|H Chain H, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471968|pdb|3I4N|H Chain H, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618772|pdb|3K1F|H Chain H, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914557|pdb|3K7A|H Chain H, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982480|pdb|3M3Y|H Chain H, Rna Polymerase Ii Elongation Complex C
gi|295982493|pdb|3M4O|H Chain H, Rna Polymerase Ii Elongation Complex B
gi|325053970|pdb|3PO2|H Chain H, Arrested Rna Polymerase Ii Elongation Complex
gi|325053985|pdb|3PO3|H Chain H, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634545|pdb|3QT1|H Chain H, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197461|pdb|3RZD|H Chain H, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197473|pdb|3RZO|H Chain H, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197485|pdb|3S14|H Chain H, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197497|pdb|3S15|H Chain H, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197509|pdb|3S16|H Chain H, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197521|pdb|3S17|H Chain H, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197533|pdb|3S1M|H Chain H, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197545|pdb|3S1N|H Chain H, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197557|pdb|3S1Q|H Chain H, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197569|pdb|3S1R|H Chain H, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197581|pdb|3S2D|H Chain H, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781202|pdb|3S2H|H Chain H, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|353251640|pdb|3J0K|H Chain H, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380843|pdb|4A3C|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546297|pdb|4A3B|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546315|pdb|4A3D|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546332|pdb|4A3E|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546349|pdb|4A3F|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546366|pdb|4A3J|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546383|pdb|4A3K|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546399|pdb|4A3L|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546416|pdb|4A3M|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977886|pdb|4A3G|H Chain H, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977901|pdb|4A3I|H Chain H, Rna Polymerase Ii Binary Complex With Dna
gi|380764986|pdb|4A93|H Chain H, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145453|pdb|4BBR|H Chain H, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145466|pdb|4BBS|H Chain H, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|287826|emb|CAA37383.1| RNA polymerase subunit RPB8 [Saccharomyces cerevisiae]
gi|1050776|emb|CAA63187.1| RBP8 [Saccharomyces cerevisiae]
gi|1420518|emb|CAA99443.1| RPB8 [Saccharomyces cerevisiae]
gi|51013625|gb|AAT93106.1| YOR224C [Saccharomyces cerevisiae]
gi|151945313|gb|EDN63556.1| RNA polymerase subunit (common to polymerases I, II and III)
[Saccharomyces cerevisiae YJM789]
gi|190407533|gb|EDV10800.1| 16 kDa RNA polymerase subunit [Saccharomyces cerevisiae RM11-1a]
gi|256269634|gb|EEU04916.1| Rpb8p [Saccharomyces cerevisiae JAY291]
gi|259149703|emb|CAY86507.1| Rpb8p [Saccharomyces cerevisiae EC1118]
gi|285815102|tpg|DAA10995.1| TPA: Rpb8p [Saccharomyces cerevisiae S288c]
gi|323302947|gb|EGA56751.1| Rpb8p [Saccharomyces cerevisiae FostersB]
gi|323307284|gb|EGA60564.1| Rpb8p [Saccharomyces cerevisiae FostersO]
gi|323331546|gb|EGA72961.1| Rpb8p [Saccharomyces cerevisiae AWRI796]
gi|323335438|gb|EGA76724.1| Rpb8p [Saccharomyces cerevisiae Vin13]
gi|323346416|gb|EGA80704.1| Rpb8p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352152|gb|EGA84689.1| Rpb8p [Saccharomyces cerevisiae VL3]
gi|349581380|dbj|GAA26538.1| K7_Rpb8p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365762898|gb|EHN04430.1| Rpb8p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296552|gb|EIW07654.1| Rpb8p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 146
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 64/106 (60%), Gaps = 11/106 (10%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTM 59
MSN LF+DIF V ++DP +++KV RIEA S D L LD+N EL+P+ D T+
Sbjct: 1 MSN-TLFDDIFQVSEVDP--GRYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTV 57
Query: 60 ALAHTLNLDGTP-----DTGYYTP--GARKTLADKYEYIMHGKLFK 98
+A +LNL+ TP T + P ++LAD Y+Y+M+G +K
Sbjct: 58 TIASSLNLEDTPANDSSATRSWRPPQAGDRSLADDYDYVMYGTAYK 103
>gi|367003018|ref|XP_003686243.1| hypothetical protein TPHA_0F03280 [Tetrapisispora phaffii CBS 4417]
gi|357524543|emb|CCE63809.1| hypothetical protein TPHA_0F03280 [Tetrapisispora phaffii CBS 4417]
Length = 144
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 67/100 (67%), Gaps = 8/100 (8%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTMALAH 63
LF+DIFV+ +DP +++KVSRIEA S + + L LD+N++L+P+ + D+ T+A+A
Sbjct: 4 TLFDDIFVISDVDP--GRYNKVSRIEASSTSQEQTKLTLDINTDLFPVNLKDQLTIAIAS 61
Query: 64 TLNLDGTPDT----GYYTPGA-RKTLADKYEYIMHGKLFK 98
+L+ DG+ ++ + P ++LAD Y+Y+M+G +K
Sbjct: 62 SLSTDGSVNSSDNKSWRLPRPNERSLADDYDYVMYGTAYK 101
>gi|403414230|emb|CCM00930.1| predicted protein [Fibroporia radiculosa]
Length = 671
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/69 (52%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
V+F+DIF + ID +GKKFD+VSR+ AHS+N DM + LD N ELYP++ F +ALA +
Sbjct: 512 VVFDDIFTINAIDKEGKKFDRVSRLYAHSKNYDMDLTLDYNIELYPLQKDQSFALALATS 571
Query: 65 LNLDGTPDT 73
L G P T
Sbjct: 572 L-ARGPPGT 579
>gi|401883784|gb|EJT47971.1| DNA-directed RNA polymerases i, ii, and iii 17.1 kda polypeptide
[Trichosporon asahii var. asahii CBS 2479]
gi|406696310|gb|EKC99602.1| DNA-directed RNA polymerases i, ii, and iii 17.1 kda polypeptide
[Trichosporon asahii var. asahii CBS 8904]
Length = 187
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%), Gaps = 12/107 (11%)
Query: 14 EKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLD-GTPD 72
+ +D DGKKFD+VSRI A S + M + LDV +ELYP++V D F++ LA L D +
Sbjct: 45 QDVDRDGKKFDRVSRINAKSSDLGMELTLDVANELYPLKVDDHFSLLLARNLKPDEIEAE 104
Query: 73 TGYYTPGARKT-----------LADKYEYIMHGKLFKIGDEGSGKSL 108
T G RK LA+ Y+Y+M+GK++K D G+++
Sbjct: 105 EDEETEGTRKIKRELWRADDQGLANDYDYVMYGKIYKFDDAQKGEAM 151
>gi|255721625|ref|XP_002545747.1| DNA-directed RNA polymerases I [Candida tropicalis MYA-3404]
gi|240136236|gb|EER35789.1| DNA-directed RNA polymerases I [Candida tropicalis MYA-3404]
Length = 148
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 66/112 (58%), Gaps = 7/112 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNC-DMYMLLDVNSELYPMRVGDKFTMALAH 63
+LFED+F+V+ DP +++KV RI HS D+ + LD+NSEL+P++ D T+ LA
Sbjct: 4 ILFEDMFIVDSTDP--GRYNKVCRITGHSSTSKDITITLDINSELFPVQNNDSLTITLAS 61
Query: 64 TLNLDG---TPDTGYYTPGA-RKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+L + T + + P A ++LAD Y+Y+M+G ++K + + Y
Sbjct: 62 SLGNEASMITSNGSWRPPKADDRSLADDYDYVMYGTVYKFEESSDTDKMSVY 113
>gi|401623466|gb|EJS41563.1| rpb8p [Saccharomyces arboricola H-6]
Length = 146
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 60/103 (58%), Gaps = 12/103 (11%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTMALAH 63
LF+DIF V ++DP +++KV RIEA S D L LD+N EL+P+ D T+ +A
Sbjct: 4 TLFDDIFQVSEVDP--GRYNKVCRIEATSTTQDQCKLTLDINVELFPVATQDSLTVTIAS 61
Query: 64 TLNLDGTPDTGYYT--------PGARKTLADKYEYIMHGKLFK 98
+LNL+ TP PG R ++AD Y+Y+MHG +K
Sbjct: 62 SLNLEDTPANDSSVTRSWRPPQPGDR-SIADDYDYVMHGTAYK 103
>gi|345564101|gb|EGX47082.1| hypothetical protein AOL_s00097g128 [Arthrobotrys oligospora ATCC
24927]
Length = 155
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 65/114 (57%), Gaps = 10/114 (8%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
+ +L + F + ID +K+D+VSRI N D+ LD+ +LYPM+ G+ + LA
Sbjct: 15 DAILLSENFSINSID--SQKYDRVSRITG--SNPDVKFHLDIAHDLYPMQPGETIELVLA 70
Query: 63 HTLNLDGTPDTGYYTPGAR-----KTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
TL LDG+ D G G R TLAD YEY+ +GK+++ +E S+KAY
Sbjct: 71 STLKLDGSSDIGEAKQGWRDIDEMPTLADAYEYVCYGKIYRF-EEAGVDSIKAY 123
>gi|354546031|emb|CCE42760.1| hypothetical protein CPAR2_204030 [Candida parapsilosis]
Length = 148
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 64/112 (57%), Gaps = 7/112 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNC-DMYMLLDVNSELYPMRVGDKFTMALAH 63
VLFED+F V+ DP ++++V RI HS D+ + LD+NSEL+P++ D T+ LA
Sbjct: 4 VLFEDMFTVDSTDP--GRYNRVCRITGHSLTSKDITITLDINSELFPVKENDSLTITLAS 61
Query: 64 TLNLDGT--PDTGYYTP--GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
TL + + G + P ++LAD Y+Y+M+G ++K + + Y
Sbjct: 62 TLGNESSMITSNGSWRPPKQGERSLADDYDYVMYGTVYKFEENADNDKMSVY 113
>gi|321262082|ref|XP_003195760.1| DNA-directed RNA polymerases I, II and III 17.1 kDapolypeptide
[Cryptococcus gattii WM276]
gi|317462234|gb|ADV23973.1| DNA-directed RNA polymerases I, II and III 17.1 kDapolypeptide,
putative [Cryptococcus gattii WM276]
Length = 153
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 63/114 (55%), Gaps = 22/114 (19%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ ++F+D F V+ +D DGKKFD+VSRI A S + M + LD+ +ELYP+ + FT+ L
Sbjct: 4 SSNIIFDDRFTVDTVDKDGKKFDRVSRITATSHSLSMSLTLDIANELYPLEPSETFTLTL 63
Query: 62 AHTL---------NLDGTPDTGYYTPGARKT-----------LADKYEYIMHGK 95
A +L N DG D G R+ LA+ Y+Y+M+GK
Sbjct: 64 ARSLVPSELEALDNADG--DEGEDGNEVRRVKRELWRSNEQGLAEDYDYVMYGK 115
>gi|361128195|gb|EHL00141.1| putative DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Glarea lozoyensis 74030]
Length = 146
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 58/95 (61%), Gaps = 5/95 (5%)
Query: 19 DGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTG---- 74
D KK+D+V R+ S + + + LD+NS++YP VGD+ + LA +L+LDG+ D G
Sbjct: 52 DDKKYDRVCRLSGTSLDGSIAIKLDINSQIYPCAVGDQIRVVLATSLSLDGSKDDGKGWR 111
Query: 75 -YYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSL 108
A T+AD ++Y+ HGK++K D +G S+
Sbjct: 112 DIARSDAESTMADMFDYVCHGKIYKFEDVENGDSM 146
>gi|448526744|ref|XP_003869388.1| Rpb8 subunit of RNA polymerases I, II, and III [Candida
orthopsilosis Co 90-125]
gi|380353741|emb|CCG23253.1| Rpb8 subunit of RNA polymerases I, II, and III [Candida
orthopsilosis]
Length = 148
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 64/112 (57%), Gaps = 7/112 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNC-DMYMLLDVNSELYPMRVGDKFTMALAH 63
VLFED+F V+ DP ++++V RI HS D+ + LD+NSEL+P++ D T+ LA
Sbjct: 4 VLFEDMFAVDSTDP--GRYNRVCRITGHSLTSKDITITLDINSELFPVKENDSLTITLAS 61
Query: 64 TLNLDGT--PDTGYYTP--GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
TL + + G + P ++LAD Y+Y+M+G ++K + + Y
Sbjct: 62 TLGNESSMITSNGSWRPPKQGERSLADDYDYVMYGTVYKFEENADNDKMSVY 113
>gi|310798250|gb|EFQ33143.1| RNA polymerase Rpb8 [Glomerella graminicola M1.001]
Length = 150
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 9/116 (7%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
++ LFE+ F V D K+D+V+RI A S + M LD+N EL+P V D + LA
Sbjct: 6 DVTLFEESFTVTNYDQ--SKYDRVARISATSTDNQTLMTLDINIELFPTSVSDSLHVVLA 63
Query: 63 HTLNLDGTPD--TGY--YTPGARK---TLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+L DG+ D G+ T G + TLAD ++Y+ +GK++K D G+++KAY
Sbjct: 64 TSLAHDGSKDDEKGWRDVTKGNQDREPTLADMFDYVCYGKIYKFEDADDGQTIKAY 119
>gi|254569534|ref|XP_002491877.1| RNA polymerase subunit ABC14.5, common to RNA polymerases I, II,
and III [Komagataella pastoris GS115]
gi|238031674|emb|CAY69597.1| RNA polymerase subunit ABC14.5, common to RNA polymerases I, II,
and III [Komagataella pastoris GS115]
gi|328351624|emb|CCA38023.1| DNA-directed RNA polymerase II subunit H [Komagataella pastoris CBS
7435]
Length = 145
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 69/114 (60%), Gaps = 10/114 (8%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQ-NCDMYMLLDVNSELYPMRVGDKFTMALAH 63
LF+DIF V+ +D +++KVSRI S N + + LD+N+E++P+ D T+ LA+
Sbjct: 4 ALFDDIFTVQTVD--NGRYNKVSRIIGISTTNSAIKLTLDINNEMFPVSQDDSLTVTLAN 61
Query: 64 TLNLDGTPDTGYYTPGAR------KTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+L+LDG ++ ++ R K+LAD Y+Y+M G ++K +EG +K Y
Sbjct: 62 SLSLDGEDESANFSKSWRPPKPTDKSLADDYDYVMFGTVYKF-EEGDEDKIKVY 114
>gi|448100087|ref|XP_004199269.1| Piso0_002695 [Millerozyma farinosa CBS 7064]
gi|448103784|ref|XP_004200125.1| Piso0_002695 [Millerozyma farinosa CBS 7064]
gi|359380691|emb|CCE82932.1| Piso0_002695 [Millerozyma farinosa CBS 7064]
gi|359381547|emb|CCE82006.1| Piso0_002695 [Millerozyma farinosa CBS 7064]
Length = 148
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 66/112 (58%), Gaps = 7/112 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNC-DMYMLLDVNSELYPMRVGDKFTMALAH 63
+LFED+F VE +D +++KV RI A S D+ + LD+NSEL+P+R D T+ LA
Sbjct: 4 ILFEDMFNVESVD--AGRYNKVGRITAQSSTSQDIKITLDINSELFPVRANDSLTIMLAS 61
Query: 64 TLNLDGT--PDTGYYTP--GARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+L + + +G + P K+LAD ++Y+M+G ++K + + + Y
Sbjct: 62 SLGNESSMLTASGSWRPPKSNDKSLADDFDYVMYGTVYKFEESSNNDKMSVY 113
>gi|380486027|emb|CCF38977.1| RNA polymerase Rpb8 [Colletotrichum higginsianum]
Length = 150
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 9/116 (7%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
++ LFE+ F V D K+D+V+RI A S + M LD+N EL+P V D + LA
Sbjct: 6 DVTLFEESFTVTNYDQ--SKYDRVARISATSTDNQTLMTLDINIELFPASVSDSLHVVLA 63
Query: 63 HTLNLDGTPD--TGY--YTPGARK---TLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+L DG+ D G+ T G + TLAD ++Y+ +GK++K D G+++KAY
Sbjct: 64 TSLAHDGSKDDEKGWRDVTKGNQDREPTLADMFDYVCYGKIYKFEDADDGQTIKAY 119
>gi|365758315|gb|EHN00165.1| Rpb8p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 212
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 62/107 (57%), Gaps = 13/107 (12%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTM 59
MSN LF+DIF V +DP +++KV RIEA S D L LD+N EL+P+ D T+
Sbjct: 67 MSN-TLFDDIFQVSDVDP--GRYNKVCRIEAASTTHDQCKLTLDINVELFPVAAQDSLTV 123
Query: 60 ALAHTLNLDGTPDTGYYT--------PGARKTLADKYEYIMHGKLFK 98
+A +LNL+ TP PG R +LAD Y+Y+M+G +K
Sbjct: 124 TIASSLNLEDTPANDSSATRSWRPPQPGDR-SLADDYDYVMYGTAYK 169
>gi|380024944|ref|XP_003696246.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Apis florea]
Length = 173
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 59/94 (62%), Gaps = 6/94 (6%)
Query: 24 DKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGARK- 82
D +SR+ S++ M ++LD+NS LYPM +GDKF + LA TL DG PD G + ++
Sbjct: 45 DYLSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATTLREDGYPDGGEWNATEQEG 104
Query: 83 -TLADKYEYIMHGKLFKI-GDEGSGK---SLKAY 111
+ AD +EY+M G +++I GDE S + L AY
Sbjct: 105 GSRADSFEYVMSGMVYRIEGDEASNEPSSRLSAY 138
>gi|367045428|ref|XP_003653094.1| hypothetical protein THITE_2128764 [Thielavia terrestris NRRL 8126]
gi|347000356|gb|AEO66758.1| hypothetical protein THITE_2128764 [Thielavia terrestris NRRL 8126]
Length = 116
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 69/113 (61%), Gaps = 8/113 (7%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ LFED F +E++ K+D+V RI S++ + M LD+N EL+P +VG++ +AL
Sbjct: 6 SDAQLFEDHFRIERLSE--PKYDRVDRIYCTSEDGSISMSLDINKELFPCKVGEELHVAL 63
Query: 62 AHTLNLDGTPD--TGYY----TPGARKTLADKYEYIMHGKLFKIGDEGSGKSL 108
A +L+ DG+ D G+ + TLAD ++Y+ +GK++K D G+++
Sbjct: 64 ATSLHYDGSKDDERGWRDVAKAGASDATLADIFDYVCYGKIYKFEDAEDGRTM 116
>gi|342885068|gb|EGU85177.1| hypothetical protein FOXB_04292 [Fusarium oxysporum Fo5176]
Length = 148
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
+ LFE+ F V + D K+D+V+RI S + M LD+N EL+P V D + L+
Sbjct: 5 DATLFEESFTVTEYDQ--SKYDRVARISCTSSDSQTVMTLDINIELFPCAVSDTLHVVLS 62
Query: 63 HTLNLDGTP--DTGYYTPG----ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
TL+LDG+ + G+ G A T AD Y+Y+ HGK++K + G ++ AY
Sbjct: 63 TTLSLDGSKEDEKGWRDVGKGGDAPATAADLYDYVCHGKIYKFEETFDGNTINAY 117
>gi|326474093|gb|EGD98102.1| DNA-directed RNA polymerase I [Trichophyton tonsurans CBS 112818]
gi|326478291|gb|EGE02301.1| DNA-directed RNA polymerase I [Trichophyton equinum CBS 127.97]
Length = 146
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 8/117 (6%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + I+ +K+D+VSRI S + + LDVN+E+YP G+ ++A
Sbjct: 1 MSDPILFEDTFSITSIN--AQKYDRVSRISCTSTDHLITFTLDVNTEIYPCAAGESLSLA 58
Query: 61 LAHTLNLDGTPD-TG----YYTPG-ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
LA TL LDG + TG + G TLA+ Y+Y+ +GK+++ + + ++ +
Sbjct: 59 LASTLALDGKEEATGERAVWRDVGMGENTLANDYDYVCYGKVYRFEESSTAGNMAVF 115
>gi|401840478|gb|EJT43283.1| RPB8-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 146
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 62/107 (57%), Gaps = 13/107 (12%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTM 59
MSN LF+DIF V +DP +++KV RIEA S D L LD+N EL+P+ D T+
Sbjct: 1 MSN-TLFDDIFQVSDVDP--GRYNKVCRIEAASTTHDQCKLTLDINVELFPVTAQDSLTV 57
Query: 60 ALAHTLNLDGTPDTGYYT--------PGARKTLADKYEYIMHGKLFK 98
+A +LNL+ TP PG R +LAD Y+Y+M+G +K
Sbjct: 58 TIASSLNLEDTPANDSSATRSWRPPQPGDR-SLADDYDYVMYGTAYK 103
>gi|340521877|gb|EGR52111.1| predicted protein [Trichoderma reesei QM6a]
Length = 151
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 8/115 (6%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
+ LFE+ F V D D K+D+V+RI S + M LD+N EL+P V D + L
Sbjct: 8 DATLFEESFTV--TDYDQSKYDRVARISCTSSDSQTVMTLDINIELFPCSVSDTLHVVLT 65
Query: 63 HTLNLDGTP--DTGYYTPG----ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
TL+ DGT D G+ G A TLAD Y+Y+ +GK++K + G ++ AY
Sbjct: 66 TTLSPDGTKEDDKGWRDVGKAGDAPATLADLYDYVCYGKIYKFEETFDGNTINAY 120
>gi|403213497|emb|CCK67999.1| hypothetical protein KNAG_0A03110 [Kazachstania naganishii CBS
8797]
Length = 146
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 66/106 (62%), Gaps = 11/106 (10%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTM 59
MSN LF+DIF V ++DP +++KV RIEA S + L LD+N+EL+P+ V ++ T+
Sbjct: 1 MSN-ALFDDIFSVNEVDP--ARYNKVCRIEAQSTTQEQCKLTLDLNTELFPVSVNEQLTV 57
Query: 60 ALAHTLNLDGTPDTG-----YYTPGAR--KTLADKYEYIMHGKLFK 98
LA +L+LD G + P + ++LAD Y+Y+M+G ++
Sbjct: 58 TLASSLSLDAQGTAGDTASRSWRPPQQGDRSLADDYDYVMYGTAYR 103
>gi|451856556|gb|EMD69847.1| hypothetical protein COCSADRAFT_214409 [Cochliobolus sativus
ND90Pr]
Length = 146
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 73/119 (61%), Gaps = 9/119 (7%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ +FE+ F + I+ + K+D+VSRI S + + M LD+N EL+P+ VG+ ++
Sbjct: 1 MADAQVFEETFNITSINNE--KYDRVSRIFGTSTDSQITMTLDINHELFPVTVGESISLV 58
Query: 61 LAHTLNLDGTP----DTGYYTPGAR--KTLADKYEYIMHGKLFKIGDEGSGKSLKAYET 113
LA TL LDG DT + G + TLAD Y+Y+ +GK +++ + G+G ++K + +
Sbjct: 59 LATTLALDGNSKGENDTMWRNVGKQGVATLADMYDYVCYGKNYRM-EGGNGDTIKYFAS 116
>gi|241958630|ref|XP_002422034.1| DNA-directed RNA polymerase subunit common to I, II, and III,
putative [Candida dubliniensis CD36]
gi|223645379|emb|CAX40035.1| DNA-directed RNA polymerase subunit common to I, II, and III,
putative [Candida dubliniensis CD36]
Length = 148
Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 65/112 (58%), Gaps = 7/112 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNC-DMYMLLDVNSELYPMRVGDKFTMALAH 63
+LFED+F+V+ DP +++KVSRI HS D+ + LD+N EL+P++ D T+ LA
Sbjct: 4 ILFEDMFIVDSTDP--GRYNKVSRITGHSSTSKDITITLDINKELFPVQNHDSLTITLAS 61
Query: 64 TLNLDGT--PDTGYYTPGA--RKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+L + + G + P K+LAD Y+Y+M+G ++K + + Y
Sbjct: 62 SLGNESSMITSNGSWRPPKFDDKSLADDYDYVMYGTIYKFEENTDNDKMAVY 113
>gi|344303910|gb|EGW34159.1| 16-kDa RNA polymerase subunit [Spathaspora passalidarum NRRL
Y-27907]
Length = 148
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 65/112 (58%), Gaps = 7/112 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNC-DMYMLLDVNSELYPMRVGDKFTMALAH 63
+LFED+F+V+ D +++KV RI HS D+ + LD+NSEL+P++ D T+ LA
Sbjct: 4 ILFEDMFIVDS--TDAARYNKVCRITGHSSTSQDIKITLDINSELFPVKTKDSLTITLAS 61
Query: 64 TLNLDG---TPDTGYYTPGA-RKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+L + T + + P A ++LAD Y+Y+M+G ++K + + Y
Sbjct: 62 SLGNESSMLTSNGSWRPPKADDRSLADDYDYVMYGTVYKFEENADSDKMSVY 113
>gi|343425744|emb|CBQ69278.1| related to RPB8-DNA-directed RNA polymerase I, II, III 16 KD
subunit [Sporisorium reilianum SRZ2]
Length = 162
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 66/123 (53%), Gaps = 27/123 (21%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LF+ FVV +IDPDGKKFD+VSRI A S + +M + +D+ ++++P+ G + T LA TL
Sbjct: 6 LFDTQFVVSQIDPDGKKFDRVSRIIASSPSLEMSLSIDIATDVWPVTEGQQLTFQLASTL 65
Query: 66 NLDGT---PDTGYYT-------------------PGARKTLADKYEYIMHGKLF----KI 99
D PD G PG +AD ++Y+M+GK++ K+
Sbjct: 66 KKDTAATKPDAGVDAETHDAAAQAAERDAWRLDQPG-NGGVADDFDYVMYGKIYRYDEKV 124
Query: 100 GDE 102
DE
Sbjct: 125 NDE 127
>gi|406604276|emb|CCH44248.1| DNA-directed RNA polymerase [Wickerhamomyces ciferrii]
Length = 109
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 69/109 (63%), Gaps = 9/109 (8%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEA-HSQNCDMYMLLDVNSELYPMRVGDKFTM 59
MSN LF+DIF + D D +++KVSRI S + D+ + LD+NS+L+P+ G+ T+
Sbjct: 1 MSN-TLFDDIFNI--TDVDAARYNKVSRINGTSSTSSDIKITLDINSDLFPVTSGEALTI 57
Query: 60 ALAHTLNLDG-TPDT--GYYTPGA-RKTLADKYEYIMHGKLFKIGDEGS 104
LA +L LD DT + P A K+LAD Y+Y+M+G ++K +EGS
Sbjct: 58 TLASSLALDDKNKDTTGSWRAPKAGEKSLADDYDYVMYGTVYKF-EEGS 105
>gi|413934733|gb|AFW69284.1| hypothetical protein ZEAMMB73_608801 [Zea mays]
Length = 115
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 67/122 (54%), Gaps = 22/122 (18%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELY-PMRVGDKFTMALAHT 64
+F++ F V K+DPDG D+V+RIEAHS N +MYM LDV +E+Y P+ F + H
Sbjct: 5 IFKNKFEVSKLDPDG---DEVNRIEAHSVN-EMYMQLDVATEVYEPI----PFLLGAQH- 55
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAYETTTQSIHYYFIW 124
DG P + RKTL D YEYIM GKLFK+ + + L E Q F+
Sbjct: 56 ---DGIP----FMLLGRKTLVDDYEYIMLGKLFKVSKDSTKDDLHGDEILPQ-----FVA 103
Query: 125 AC 126
C
Sbjct: 104 MC 105
>gi|340381936|ref|XP_003389477.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Amphimedon queenslandica]
Length = 211
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 69/114 (60%), Gaps = 13/114 (11%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCD-MYMLLDVNSELYPMRVGDKFTMALAHT 64
+FE F ++ I+ KKF++VSR+ +N + + ++LDVN++LYPM VGD L T
Sbjct: 68 VFESFFQIKDIE---KKFERVSRLFCEGENFNKIQLILDVNTQLYPMSVGDNIHFLLTTT 124
Query: 65 LNLDGT--PD-TGYY----TPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
L D P TG Y T GA +LAD ++YIM+GK++++ EG+ SL Y
Sbjct: 125 LGADHEDFPTVTGTYWSRVTDGATSSLADAFQYIMYGKIYRL--EGAEDSLSVY 176
>gi|358378123|gb|EHK15805.1| hypothetical protein TRIVIDRAFT_184264 [Trichoderma virens Gv29-8]
Length = 151
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 8/115 (6%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
+ LFE+ F V + D K+D+V+RI S + M LD+N EL+P V D + L
Sbjct: 8 DATLFEESFTVTEYDQ--SKYDRVARISCTSSDSQTVMTLDINIELFPCSVSDTLHVVLT 65
Query: 63 HTLNLDGTP--DTGYYTPG----ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
TL+ DGT D G+ G A TLAD Y+Y+ +GK++K + G ++ AY
Sbjct: 66 TTLSPDGTKEDDKGWRDVGKAGDAPATLADLYDYVCYGKIYKFEETFDGNTINAY 120
>gi|119192578|ref|XP_001246895.1| hypothetical protein CIMG_00666 [Coccidioides immitis RS]
gi|392863865|gb|EAS35364.2| DNA-directed RNA polymerase I [Coccidioides immitis RS]
Length = 146
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 16/121 (13%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + I+ +K+D+VSRI S + LDVNSELY G+ ++A
Sbjct: 1 MSDPILFEDTFTITSIN--AQKYDRVSRISCTSTDQLTTFTLDVNSELYRCAPGESLSLA 58
Query: 61 LAHTLNLDGTPDTGYYTPGARK----------TLADKYEYIMHGKLFKIGDEGSGKSLKA 110
LA TL LDG D G G R TLA+ Y+Y+ +GK+++ D + ++
Sbjct: 59 LASTLALDG-KDEG---AGGRAVWRDVGMGETTLANDYDYVCYGKVYRFEDSSTAGNMAV 114
Query: 111 Y 111
+
Sbjct: 115 F 115
>gi|380024948|ref|XP_003696248.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Apis florea]
Length = 128
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 58/92 (63%), Gaps = 6/92 (6%)
Query: 26 VSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGARK--T 83
+SR+ S++ M ++LD+NS LYPM +GDKF + LA TL DG PD G + ++ +
Sbjct: 2 LSRLHCESESFKMDLILDINSWLYPMELGDKFRLVLATTLREDGYPDGGEWNATEQEGGS 61
Query: 84 LADKYEYIMHGKLFKI-GDEGSGK---SLKAY 111
AD +EY+M G +++I GDE S + L AY
Sbjct: 62 RADSFEYVMSGMVYRIEGDEASNEPSSRLSAY 93
>gi|294660089|ref|XP_002777720.1| DEHA2G22902p [Debaryomyces hansenii CBS767]
gi|199434459|emb|CAR66031.1| DEHA2G22902p [Debaryomyces hansenii CBS767]
Length = 148
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 66/112 (58%), Gaps = 7/112 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNC-DMYMLLDVNSELYPMRVGDKFTMALAH 63
+LFED+F V+ +D +++KVSRI S D+ + LD+NSEL+P+R D T+ LA
Sbjct: 4 ILFEDMFNVDSVDS--ARYNKVSRITGQSSTSQDIKITLDINSELFPVRDNDSLTIMLAS 61
Query: 64 TLNLDG---TPDTGYYTPGAR-KTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+L + T + + P + ++LAD Y+Y+M+G ++K + + + Y
Sbjct: 62 SLGNESSMLTSNGSWRPPKSNDRSLADDYDYVMYGTVYKFEENSNNDKMSVY 113
>gi|315052670|ref|XP_003175709.1| DNA-directed RNA polymerase I [Arthroderma gypseum CBS 118893]
gi|311341024|gb|EFR00227.1| DNA-directed RNA polymerase I [Arthroderma gypseum CBS 118893]
Length = 146
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 8/117 (6%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + I+ +K+D+VSRI S + + LDVN+E+YP G+ ++A
Sbjct: 1 MSDPILFEDTFSITSIN--AQKYDRVSRISCTSTDHLITFTLDVNTEIYPCAPGESLSLA 58
Query: 61 LAHTLNLDGTPD-TG----YYTPG-ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
LA TL LDG + TG + G TLA+ Y+Y+ +GK+++ + + ++ +
Sbjct: 59 LASTLALDGKEEATGERAVWRDVGMGENTLANDYDYVCYGKVYRFEESSTAGNMAVF 115
>gi|302496637|ref|XP_003010319.1| hypothetical protein ARB_03020 [Arthroderma benhamiae CBS 112371]
gi|302658527|ref|XP_003020966.1| hypothetical protein TRV_04927 [Trichophyton verrucosum HKI 0517]
gi|327299538|ref|XP_003234462.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
gi|291173862|gb|EFE29679.1| hypothetical protein ARB_03020 [Arthroderma benhamiae CBS 112371]
gi|291184839|gb|EFE40348.1| hypothetical protein TRV_04927 [Trichophyton verrucosum HKI 0517]
gi|326463356|gb|EGD88809.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
Length = 146
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 69/117 (58%), Gaps = 8/117 (6%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + I+ +K+D+VSRI S + + LDVN+E+YP G+ ++A
Sbjct: 1 MSDPILFEDTFSITSIN--AQKYDRVSRISCTSTDHLITFTLDVNTEIYPCAPGESLSLA 58
Query: 61 LAHTLNLDGTPD-TG----YYTPG-ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
LA TL LDG + TG + G TLA+ Y+Y+ +GK+++ + + ++ +
Sbjct: 59 LASTLALDGKEEATGERAVWRDVGMGENTLANDYDYVCYGKVYRFEESSTAGNMAVF 115
>gi|367009268|ref|XP_003679135.1| hypothetical protein TDEL_0A05920 [Torulaspora delbrueckii]
gi|359746792|emb|CCE89924.1| hypothetical protein TDEL_0A05920 [Torulaspora delbrueckii]
Length = 145
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 62/101 (61%), Gaps = 9/101 (8%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTMALAH 63
LF+DIF V +DP +++KVSRIEA S D L LDVN++L+P+++ ++ T+ +A
Sbjct: 4 TLFDDIFAVTDVDP--GRYNKVSRIEASSTTQDQCKLSLDVNTDLFPVQLQEQLTVTIAS 61
Query: 64 TLNLDGTPDTGYYT------PGARKTLADKYEYIMHGKLFK 98
+L +D + T P ++LAD Y+Y+M+G +K
Sbjct: 62 SLGVDEGANDSSATRSWRPPPPGERSLADDYDYVMYGTAYK 102
>gi|296413304|ref|XP_002836354.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630171|emb|CAZ80545.1| unnamed protein product [Tuber melanosporum]
Length = 174
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 71/120 (59%), Gaps = 12/120 (10%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS +LF+ F + D + K+D+V+RI + D+ LD++ ELYP+ +G+ ++
Sbjct: 31 MSESILFDSTFPITGFDQN--KYDRVARISGERE--DLKFSLDIHVELYPVAIGETVQLS 86
Query: 61 LAHTLNLDGTPD------TGYY-TPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAYET 113
LA TL+ DG + TG+ A +LAD Y+Y+ HGK+++ +EG+G+ +K Y +
Sbjct: 87 LASTLSPDGAKEDPAESKTGWKENKAAEPSLADTYDYVCHGKVYRF-EEGNGEFIKVYAS 145
>gi|388855390|emb|CCF51054.1| related to RPB8-DNA-directed RNA polymerase I, II, III 16 KD
subunit [Ustilago hordei]
Length = 163
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 37/135 (27%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LF+ FVV++IDPDGKKFD+VSRI A S + +M + +D+ ++++P+ G + T LA TL
Sbjct: 6 LFDTQFVVKQIDPDGKKFDRVSRIIASSASLEMTLSIDIATDIWPVSEGQQLTFQLASTL 65
Query: 66 NLDGTPDTGYYTPGARKT-----------------------------LADKYEYIMHGKL 96
D GA KT +AD ++YIM+GK+
Sbjct: 66 KKD-------TATGASKTDAADGDTQDAAAQAAERDAWRLDQPGNGGIADDFDYIMYGKI 118
Query: 97 FKIGDEGSGKSLKAY 111
++ DE + + Y
Sbjct: 119 YRY-DEKAADEVTVY 132
>gi|429850751|gb|ELA25994.1| DNA-directed RNA polymerases i [Colletotrichum gloeosporioides Nara
gc5]
Length = 150
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 9/116 (7%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
++ LFE+ F V D K+D+V+RI A S + M LD+N EL+P D + LA
Sbjct: 6 DVTLFEESFTVTNYDQ--SKYDRVARISATSTDNQTLMTLDINIELFPASTSDSLHVVLA 63
Query: 63 HTLNLDGTPD--TGY--YTPG---ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+L DG+ D G+ T G TLAD ++Y+ +GK++K D G+++KAY
Sbjct: 64 TSLAHDGSKDEEKGWRDVTKGNHDREPTLADMFDYVCYGKIYKFEDADDGQTIKAY 119
>gi|156841640|ref|XP_001644192.1| hypothetical protein Kpol_1059p24 [Vanderwaltozyma polyspora DSM
70294]
gi|156114829|gb|EDO16334.1| hypothetical protein Kpol_1059p24 [Vanderwaltozyma polyspora DSM
70294]
Length = 146
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 66/106 (62%), Gaps = 11/106 (10%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTM 59
MSN LF+DIF V +DP +++KVSRIEA S + L LD+N++L+P+ V D+ T+
Sbjct: 1 MSN-TLFDDIFSVSDVDP--GRYNKVSRIEASSTTQEQCKLTLDINTDLFPVSVQDQITV 57
Query: 60 ALAHTLNLDGTPDT------GYYTPGA-RKTLADKYEYIMHGKLFK 98
A+ +L++DG + + P ++LAD Y+Y+M+G +K
Sbjct: 58 AVVTSLSVDGNGENDNSAGRSWRPPQPNERSLADDYDYVMYGTAYK 103
>gi|46116862|ref|XP_384449.1| hypothetical protein FG04273.1 [Gibberella zeae PH-1]
gi|408389938|gb|EKJ69357.1| hypothetical protein FPSE_10470 [Fusarium pseudograminearum CS3096]
Length = 148
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
+ LFE+ F V ++ D K+D+V+RI S + M LD+N EL+P GD + L
Sbjct: 5 DATLFEESFTV--MEYDQSKYDRVARIHCTSADSQTIMSLDINIELFPCVRGDSLHVVLT 62
Query: 63 HTLNLDGT--PDTGYYTPG----ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
TL LDG+ + G+ G A T+AD Y+Y+ HGK++K + G ++ AY
Sbjct: 63 TTLALDGSKEEEKGWRDVGKGGDAPATIADLYDYVCHGKIYKFEETFDGNTINAY 117
>gi|68490134|ref|XP_711116.1| hypothetical protein CaO19.13691 [Candida albicans SC5314]
gi|68490169|ref|XP_711099.1| hypothetical protein CaO19.6314 [Candida albicans SC5314]
gi|46432375|gb|EAK91860.1| hypothetical protein CaO19.6314 [Candida albicans SC5314]
gi|46432393|gb|EAK91877.1| hypothetical protein CaO19.13691 [Candida albicans SC5314]
gi|238879935|gb|EEQ43573.1| DNA-directed RNA polymerases I [Candida albicans WO-1]
Length = 148
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 64/112 (57%), Gaps = 7/112 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNC-DMYMLLDVNSELYPMRVGDKFTMALAH 63
+LFED+F+V+ DP +++KV RI HS D+ + LD+N EL+P++ D T+ LA
Sbjct: 4 ILFEDMFIVDSTDP--GRYNKVCRITGHSSTSKDITITLDINKELFPVQNHDSLTITLAS 61
Query: 64 TLNLDGT--PDTGYYTPGA--RKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+L + + G + P ++LAD Y+Y+M+G ++K + + Y
Sbjct: 62 SLGNESSMITSNGSWRPPKPDERSLADDYDYVMYGTVYKFEENADNDKMAVY 113
>gi|444323828|ref|XP_004182554.1| hypothetical protein TBLA_0J00350 [Tetrapisispora blattae CBS 6284]
gi|387515602|emb|CCH63035.1| hypothetical protein TBLA_0J00350 [Tetrapisispora blattae CBS 6284]
Length = 147
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 67/107 (62%), Gaps = 12/107 (11%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDM-YMLLDVNSELYPMRVGDKFTM 59
MSN VLF+DIF V ++DP +++KVSRIEA S D + LD+N++L+P++ ++ T+
Sbjct: 1 MSN-VLFDDIFSVSEVDP--GRYNKVSRIEATSTTQDQCKITLDINTDLFPVQPQEQLTI 57
Query: 60 ALAHTLNLDGTPD------TGYYTPGA--RKTLADKYEYIMHGKLFK 98
+A +L+ D + T + P ++LAD Y+Y+MHG +K
Sbjct: 58 TIASSLSFDDDSENKNQSVTKSWRPPQPNERSLADDYDYVMHGVAYK 104
>gi|189206113|ref|XP_001939391.1| DNA-directed RNA polymerases I [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187975484|gb|EDU42110.1| DNA-directed RNA polymerases I [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 146
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 9/119 (7%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ +FE+ F + I+ + K+D+VSRI S + + M LD+N EL+P+ G +
Sbjct: 1 MADAQVFEETFNITSINNE--KYDRVSRIYGTSTDNQITMTLDINHELFPVSTGASLNLV 58
Query: 61 LAHTLNLDGTP----DTGYYTPGAR--KTLADKYEYIMHGKLFKIGDEGSGKSLKAYET 113
LA TL LDG+ DT + G + TLAD Y+Y+ +GK +++ + G G ++K Y +
Sbjct: 59 LATTLALDGSAKGENDTMWRNVGKQGVTTLADMYDYVCYGKNYRM-EGGDGDTIKYYAS 116
>gi|330912439|ref|XP_003295947.1| hypothetical protein PTT_04001 [Pyrenophora teres f. teres 0-1]
gi|311332300|gb|EFQ95958.1| hypothetical protein PTT_04001 [Pyrenophora teres f. teres 0-1]
Length = 146
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 9/119 (7%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ +FE+ F + I+ + K+D+VSRI S + + M LD+N EL+P+ G +
Sbjct: 1 MADAQVFEETFNITSINNE--KYDRVSRIYGTSTDNQITMTLDINHELFPVSTGASLNLV 58
Query: 61 LAHTLNLDGTP----DTGYYTPGAR--KTLADKYEYIMHGKLFKIGDEGSGKSLKAYET 113
LA TL LDG+ DT + G + TLAD Y+Y+ +GK +++ + G G ++K Y +
Sbjct: 59 LATTLALDGSTKGENDTMWRNVGKQGVTTLADMYDYVCYGKNYRM-EGGDGDTIKYYAS 116
>gi|169611054|ref|XP_001798945.1| hypothetical protein SNOG_08636 [Phaeosphaeria nodorum SN15]
gi|111062684|gb|EAT83804.1| hypothetical protein SNOG_08636 [Phaeosphaeria nodorum SN15]
Length = 148
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 66/120 (55%), Gaps = 9/120 (7%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ LFE+ F+V K++ + K+D+V R+ S + + LD+N EL+P+ G +
Sbjct: 1 MADAQLFEENFIVTKVNKE--KYDRVHRLSGTSTDGSLTFTLDINHELWPVAEGSTINIV 58
Query: 61 LAHTLNLDGTPDTGYYTP------GARKTLADKYEYIMHGKLFKIGD-EGSGKSLKAYET 113
LA TL LDGT G T TLAD +EY+ +GK ++ D E +++K Y +
Sbjct: 59 LATTLALDGTTKEGAETSWRNVSRSNTATLADLFEYVCYGKNYRFEDAEAGAETVKYYAS 118
>gi|254583838|ref|XP_002497487.1| ZYRO0F06644p [Zygosaccharomyces rouxii]
gi|238940380|emb|CAR28554.1| ZYRO0F06644p [Zygosaccharomyces rouxii]
Length = 145
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 68/108 (62%), Gaps = 16/108 (14%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHS---QNCDMYMLLDVNSELYPMRVGDKF 57
MSN LF+D+F+V +DP K+++V+RIEA S ++C + LDVN++L+P++ G++
Sbjct: 1 MSN-TLFDDVFLVADVDP--GKYNRVARIEATSTTQEHCKL--ALDVNTDLFPVQTGEQV 55
Query: 58 TMALAHTLNLDGTPDTGYYT-------PGARKTLADKYEYIMHGKLFK 98
T +A +L L+ + T PG R +LAD Y+Y+MHG ++
Sbjct: 56 TATIASSLELEKNVNDPSATRSWRPPQPGER-SLADDYDYVMHGTAYR 102
>gi|71020753|ref|XP_760607.1| hypothetical protein UM04460.1 [Ustilago maydis 521]
gi|46100495|gb|EAK85728.1| hypothetical protein UM04460.1 [Ustilago maydis 521]
Length = 161
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 26/122 (21%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LF+ FVV +IDPDGKKFD+VSRI A S + DM + +D+ ++++P+ G + T LA TL
Sbjct: 6 LFDTQFVVSQIDPDGKKFDRVSRIIATSPSLDMTLSIDIATDIWPVTEGQQLTFQLASTL 65
Query: 66 ----------NLDGTPDTGYYT-----------PGARKTLADKYEYIMHGKLF----KIG 100
+DG PG +AD ++Y+M+GK++ K+
Sbjct: 66 KKETSSAKPDGVDGETQDAAAQAAERDAWRLDQPG-NGGIADDFDYVMYGKIYRYDEKVA 124
Query: 101 DE 102
DE
Sbjct: 125 DE 126
>gi|346326144|gb|EGX95740.1| UDP-glucose 4-epimerase Gal10 [Cordyceps militaris CM01]
Length = 152
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
+ LFE+ F + + D K+D+V+RI S + M+LD+N EL+P V D + L+
Sbjct: 9 DATLFEESFTITEYDQ--SKYDRVARISCTSGDSQTVMVLDINMELFPCAVSDSLHVVLS 66
Query: 63 HTLNLDGT--PDTGYYTPG----ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
TL+ DG D G+ G A TLAD Y+Y+ +GK++K + G ++ AY
Sbjct: 67 TTLSPDGARDDDKGWRDVGKGGDAPATLADLYDYVCYGKIYKFEETFDGATINAY 121
>gi|340381938|ref|XP_003389478.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Amphimedon queenslandica]
Length = 211
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 69/114 (60%), Gaps = 13/114 (11%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCD-MYMLLDVNSELYPMRVGDKFTMALAHT 64
+FE F ++ I+ KKF++VSR+ +N + + ++LD+N++LYPM VGD L T
Sbjct: 68 VFESFFQIKDIE---KKFERVSRLFCEGENFNKIQLILDINTQLYPMNVGDNIHFLLTTT 124
Query: 65 LNLDGT--PD-TGYY----TPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
L D P TG + T GA +LAD ++YIM+GK++++ EG+ SL Y
Sbjct: 125 LGADHEDFPTVTGTHWSRVTDGATSSLADTFQYIMYGKIYRL--EGAEDSLSVY 176
>gi|400600054|gb|EJP67745.1| DNA-directed RNA polymerases I [Beauveria bassiana ARSEF 2860]
Length = 152
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 64/115 (55%), Gaps = 8/115 (6%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
+ LFE+ F + D D K+D+V+RI S + M+LD+N+EL+P D + L+
Sbjct: 9 DATLFEESFTI--TDFDQSKYDRVARISCTSSDSQTVMVLDINTELFPCAESDSLHVVLS 66
Query: 63 HTLNLDGT--PDTGYYTPG----ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
TL+ DG D G+ G A TLAD Y+Y+ +GK++K + G ++ AY
Sbjct: 67 TTLSPDGVRDDDKGWRDVGKGGDAPATLADLYDYVCYGKIYKFEETFDGATINAY 121
>gi|66362188|ref|XP_628058.1| RNA polymerase II B8 subunit [Cryptosporidium parvum Iowa II]
gi|67601478|ref|XP_666402.1| RNA polymerase subunit 8c [Cryptosporidium hominis TU502]
gi|46227448|gb|EAK88383.1| RNA polymerase II B8 subunit [Cryptosporidium parvum Iowa II]
gi|54657390|gb|EAL36170.1| RNA polymerase subunit 8c [Cryptosporidium hominis]
Length = 144
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 63/101 (62%), Gaps = 4/101 (3%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFED FV+ +D KFD++ RI S D ++LD+N+EL+P+R + + L+ +
Sbjct: 7 LFEDRFVINSVD--SGKFDRIGRIRGRSVGFDADLILDINNELFPVREKESLYIGLSSQV 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGK 106
+++ P+ + +TL D+Y+Y+M+GK++++ ++ S +
Sbjct: 65 SVN--PNDIVWDNSGPQTLMDQYDYVMYGKIYRVEEKQSDR 103
>gi|342185908|emb|CCC95393.1| hypothetical protein, unlikely [Trypanosoma congolense IL3000]
Length = 149
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
V+ ED F V +PDG + +VSRI SQ ++ + DVN+E +P+ VGD+ T+ LA++
Sbjct: 6 VILEDTFTVTARNPDGVVYSRVSRIHCKSQGRNLTITSDVNTEEFPLVVGDRLTITLANS 65
Query: 65 LNLDGTPDTGYYTPGA--RKTLADKYEYIMHGKLFK 98
+ L + +Y R T +Y MHG+++
Sbjct: 66 IELQDQAGSKHYDQSVYHRNTRLQDCDYAMHGRVYS 101
>gi|443897132|dbj|GAC74474.1| GTP-binding ADP-ribosylation factor-like protein yARL3 [Pseudozyma
antarctica T-34]
Length = 160
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 25/121 (20%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LF+ FVV +IDPDGKKFD+VSRI A S + +M + +D+ ++++P+ G + T LA TL
Sbjct: 6 LFDTQFVVNQIDPDGKKFDRVSRIIASSPSLEMSLSIDIATDVWPVSEGQQLTFQLASTL 65
Query: 66 -------NLDGTPDTGYYT-------------PGARKTLADKYEYIMHGKLF----KIGD 101
+DG PG +AD ++Y+M+GK++ K+ D
Sbjct: 66 KKEAAGTKVDGADGEQDAAAQAAERDAWRLDQPG-NGGIADDFDYVMYGKIYRYDEKVAD 124
Query: 102 E 102
E
Sbjct: 125 E 125
>gi|346470149|gb|AEO34919.1| hypothetical protein [Amblyomma maculatum]
Length = 104
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKL 96
M ++LDVN+ LYP+ +GDKF + +A TL DG PD G Y P + AD +EY+M+GK+
Sbjct: 1 MDLILDVNTMLYPVDLGDKFRLVIATTLREDGYPDDGEYNPADTGPSRADSFEYVMYGKI 60
Query: 97 FKI-GDEGSGKSLKAYETTTQSI 118
++I GD+ +G++ + + T ++
Sbjct: 61 YRIEGDDITGETTRLCSSHTTNV 83
>gi|241756249|ref|XP_002406380.1| DNA-directed RNA polymerase subunit rpb8, putative [Ixodes
scapularis]
gi|215506117|gb|EEC15611.1| DNA-directed RNA polymerase subunit rpb8, putative [Ixodes
scapularis]
Length = 75
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKL 96
M ++LDVN +LYP+ +GDKF + +A TL DG PD G Y P + +D +EY+M+GK+
Sbjct: 1 MDLILDVNIQLYPVDLGDKFRLVIATTLREDGYPDDGEYNPADTGPSRSDSFEYVMYGKI 60
Query: 97 FKI-GDEGSGKSLK 109
++I GD+ SG++ +
Sbjct: 61 YRIEGDDISGETTR 74
>gi|258573937|ref|XP_002541150.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237901416|gb|EEP75817.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 146
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 16/121 (13%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS+ +LFED F + ++ +K+D+VSRI S + LDVN+ELY G+ ++A
Sbjct: 1 MSDPILFEDTFSITSVN--AQKYDRVSRISCMSSDQLTTFTLDVNTELYACSPGESLSLA 58
Query: 61 LAHTLNLDGTPDTGYYTPGARK----------TLADKYEYIMHGKLFKIGDEGSGKSLKA 110
LA TL LDG + G R TLA+ Y+Y+ +GK+++ + + ++
Sbjct: 59 LASTLALDGKEEGA----GGRAMWRDVGMGETTLANDYDYVCYGKVYRFEESSTAGNMAV 114
Query: 111 Y 111
+
Sbjct: 115 F 115
>gi|116195970|ref|XP_001223797.1| hypothetical protein CHGG_04583 [Chaetomium globosum CBS 148.51]
gi|88180496|gb|EAQ87964.1| hypothetical protein CHGG_04583 [Chaetomium globosum CBS 148.51]
Length = 116
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 71/118 (60%), Gaps = 12/118 (10%)
Query: 1 MSNIV----LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDK 56
MSNI LFE+ F +E++ + K+D+V RI S++ + M LD+N+EL+P + ++
Sbjct: 1 MSNIASDAQLFEEHFRIERLGDN--KYDRVDRIYCKSEDKSITMTLDINNELFPCKPDEE 58
Query: 57 FTMALAHTLNLDGTPD--TGYY----TPGARKTLADKYEYIMHGKLFKIGDEGSGKSL 108
+ALA +L+ DG+ D G+ + TLAD ++Y+ +GK++K D GK++
Sbjct: 59 LHVALATSLHYDGSKDDERGWRDVAKAGASDATLADIFDYVCYGKIYKFEDAEDGKTM 116
>gi|294895134|ref|XP_002775083.1| RNA polymerase subunit, putative [Perkinsus marinus ATCC 50983]
gi|239880950|gb|EER06899.1| RNA polymerase subunit, putative [Perkinsus marinus ATCC 50983]
Length = 143
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
+FED+F V+ ID + KFD+VSRI+A S + + +D+N+E+YP+ D +A+A
Sbjct: 4 IFEDMFDVKNIDDE--KFDRVSRIKAQSHTYNAEIEVDINTEIYPIGSSDTLRIAIASAA 61
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFK 98
+ + GY A+ + D YEY M+GK++K
Sbjct: 62 D----ANEGYQGEAAQPGIIDDYEYAMYGKVYK 90
>gi|449664804|ref|XP_002163514.2| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Hydra magnipapillata]
Length = 115
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGARK-TLADKYEYIMHGKL 96
M ++LDVN+++YP+ +G+KF + L TL DGTPD G Y + AD++EY+M+GK+
Sbjct: 1 MDLILDVNTQIYPVDLGEKFRLVLVTTLREDGTPDDGEYNMADNDPSRADQFEYVMYGKV 60
Query: 97 FKIGDEGSG 105
++I DE G
Sbjct: 61 YRIDDENVG 69
>gi|350536423|ref|NP_001232245.1| putative RNA polymerase II polypeptide H [Taeniopygia guttata]
gi|426343150|ref|XP_004038180.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 isoform 1 [Gorilla gorilla gorilla]
gi|197127218|gb|ACH43716.1| putative RNA polymerase II polypeptide H [Taeniopygia guttata]
Length = 114
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 55/79 (69%), Gaps = 5/79 (6%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTP-GARKTLADKYEYIMHGKL 96
M ++LDVN ++YP+ +GDKF + +A TL DGT D G Y P R + AD++EY+M+GK+
Sbjct: 1 MDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKV 60
Query: 97 FKI-GDEGSGKS---LKAY 111
++I GDE S ++ L AY
Sbjct: 61 YRIEGDETSTEAATRLSAY 79
>gi|209881476|ref|XP_002142176.1| RNA polymerase II B8 subunit [Cryptosporidium muris RN66]
gi|209557782|gb|EEA07827.1| RNA polymerase II B8 subunit, putative [Cryptosporidium muris RN66]
Length = 144
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 61/101 (60%), Gaps = 4/101 (3%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
LFED F V +D KF+++ RI S D ++LD+NS+L+P+R +K ++ + +
Sbjct: 7 LFEDRFTVNSVD--SGKFERIGRIRGKSVGLDADLILDINSDLFPVR--EKESLYIGLST 62
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGK 106
+ P + A +TL D+Y+Y+M+GK++++ ++ S +
Sbjct: 63 QVSQNPSDVVWDSAAPQTLMDQYDYVMYGKIYRVEEKQSDR 103
>gi|346474110|gb|AEO36899.1| hypothetical protein [Amblyomma maculatum]
Length = 113
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKL 96
M ++LDVN+ LYP+ +GDKF + +A TL DG PD G Y P + AD +EY+M+GK+
Sbjct: 1 MDLILDVNTMLYPVDLGDKFRLVIATTLREDGYPDDGEYNPADTGPSRADSFEYVMYGKI 60
Query: 97 FKI-GDEGSGKSLK 109
++I GD+ +G++ +
Sbjct: 61 YRIEGDDITGETTR 74
>gi|146091778|ref|XP_001470118.1| putative RNA polymerase B subunit RPB8 [Leishmania infantum JPCM5]
gi|157871622|ref|XP_001684360.1| putative RNA polymerase B subunit RPB8 [Leishmania major strain
Friedlin]
gi|398017999|ref|XP_003862186.1| RNA polymerase B subunit RPB8, putative [Leishmania donovani]
gi|68127429|emb|CAJ05166.1| putative RNA polymerase B subunit RPB8 [Leishmania major strain
Friedlin]
gi|134084912|emb|CAM69310.1| putative RNA polymerase B subunit RPB8 [Leishmania infantum JPCM5]
gi|322500415|emb|CBZ35492.1| RNA polymerase B subunit RPB8, putative [Leishmania donovani]
Length = 149
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
+N V+ ED F V ++ +G + +VSRI +Q+ + + D+NSE +P+ D+ T+ L
Sbjct: 3 ANPVILEDTFTVNGVNTEGTVYLRVSRIRCVNQDGSLTITTDINSEEFPVSTNDRLTIVL 62
Query: 62 AHTLNLDGTPDTGYYTPGA--RKTLADKYEYIMHGKLF 97
A++L L G + YY R+T + +Y MHG+++
Sbjct: 63 ANSLELGGKTGSKYYDHSVYHRETRLNDCDYAMHGRVY 100
>gi|401424862|ref|XP_003876916.1| putative RNA polymerase B subunit RPB8 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493160|emb|CBZ28445.1| putative RNA polymerase B subunit RPB8 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 149
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
+N V+ ED F V ++ +G + +VSRI +Q+ + + D+NSE +P+ D+ T+ L
Sbjct: 3 TNPVILEDTFTVNGVNTEGTVYLRVSRIRCVNQDGSLTITTDINSEEFPVATNDRLTIVL 62
Query: 62 AHTLNLDGTPDTGYYTPGA--RKTLADKYEYIMHGKLF 97
A++L L G + YY R+T + +Y MHG+++
Sbjct: 63 ANSLELGGKTGSKYYDHSVYHRETRLNDCDYAMHGRVY 100
>gi|358396870|gb|EHK46245.1| hypothetical protein TRIATDRAFT_80649 [Trichoderma atroviride IMI
206040]
Length = 151
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 63/115 (54%), Gaps = 8/115 (6%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
+ LFE+ F V D KK+D+V+RI S + + LD+N EL+P GD + L
Sbjct: 8 DATLFEEGFTVTAYDQ--KKYDRVARISCTSLDNQTLIELDINIELFPCSQGDTLHVVLT 65
Query: 63 HTLNLDGTP--DTGYYTPG----ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
TL+ DG+ D G+ G A TLAD Y+Y+ +GK++K + G ++ AY
Sbjct: 66 TTLSPDGSKEDDKGWRDVGKSGDAPATLADLYDYVCYGKIYKFEETFDGNTINAY 120
>gi|294887397|ref|XP_002772089.1| RNA polymerase subunit, putative [Perkinsus marinus ATCC 50983]
gi|294892730|ref|XP_002774205.1| RNA polymerase subunit, putative [Perkinsus marinus ATCC 50983]
gi|239876027|gb|EER03905.1| RNA polymerase subunit, putative [Perkinsus marinus ATCC 50983]
gi|239879422|gb|EER06021.1| RNA polymerase subunit, putative [Perkinsus marinus ATCC 50983]
Length = 143
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
+F+D+F V+ ID + KFD+VSRI+A S + + +D+N+E+YP+ D +A+A
Sbjct: 4 IFDDMFDVKNIDDE--KFDRVSRIKAQSHTYNAEIEVDINTEIYPIGSSDTLRIAIASAA 61
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFK 98
+ + GY A+ + D YEY M+GK++K
Sbjct: 62 D----ANEGYQGESAQPGIIDDYEYAMYGKVYK 90
>gi|443732193|gb|ELU17021.1| hypothetical protein CAPTEDRAFT_19276 [Capitella teleta]
Length = 114
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 5/79 (6%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTP-GARKTLADKYEYIMHGKL 96
M ++LDVN++LYP+ +GDKF M +A +L DG PD G Y P + + A +EY+M+GK+
Sbjct: 1 MDLILDVNTQLYPVDLGDKFRMVIATSLREDGAPDDGEYDPEESVSSRATSFEYVMYGKV 60
Query: 97 FKI-GDEGS---GKSLKAY 111
++ GDE G L AY
Sbjct: 61 YRFEGDESGQEPGSRLAAY 79
>gi|71422062|ref|XP_812014.1| RNA polymerase B subunit RPB8 [Trypanosoma cruzi strain CL Brener]
gi|70876743|gb|EAN90163.1| RNA polymerase B subunit RPB8, putative [Trypanosoma cruzi]
Length = 149
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
V+ ED F V ++PDG + KVSRI+ ++ ++ + D+N+E +P+ + D+ T+ LA++
Sbjct: 6 VILEDTFTVTALNPDGVVYIKVSRIQCKNERGNITITSDINTEEFPVSLDDRLTIMLANS 65
Query: 65 LNLDGTPDTGYYTPGA--RKTLADKYEYIMHGKLF 97
+ L G +Y R+T +Y MHG+++
Sbjct: 66 IELSGQSGAKHYDQSVYHRETRLQDCDYAMHGRVY 100
>gi|365986731|ref|XP_003670197.1| hypothetical protein NDAI_0E01380 [Naumovozyma dairenensis CBS 421]
gi|343768967|emb|CCD24954.1| hypothetical protein NDAI_0E01380 [Naumovozyma dairenensis CBS 421]
Length = 151
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 65/112 (58%), Gaps = 18/112 (16%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTM 59
MSN LF+DIF V ++D +++KV RIEA S + L LD+N+EL+P++ D+ T+
Sbjct: 1 MSN-TLFDDIFTVTEVD--AGRYNKVCRIEASSTTQEQCKLALDINTELFPVQNQDQLTI 57
Query: 60 ALAHTLNLDGTPDTGYYT-------------PGARKTLADKYEYIMHGKLFK 98
+A +L++D ++ PG R +LAD Y+Y+M+G +K
Sbjct: 58 TIASSLSIDNDDESSKNNKNSAATRSWRPPQPGDR-SLADDYDYVMYGTAYK 108
>gi|145527078|ref|XP_001449339.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416927|emb|CAK81942.1| unnamed protein product [Paramecium tetraurelia]
Length = 148
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 58/97 (59%), Gaps = 3/97 (3%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
L ++ F VE ID G+ F +VSRI+ S++ ++ M LDVN ++YP+ G ++ + + +L
Sbjct: 8 LIDEYFKVEDIDQAGQSFKRVSRIKCKSKSGEVDMELDVNIDIYPIDKGSEYRVLIVRSL 67
Query: 66 NLDGTPDTGYYTPGARKT---LADKYEYIMHGKLFKI 99
+ D G Y P + L +K++Y M G++FK+
Sbjct: 68 GISQEMDQGKYKPEFSQIDNELLEKFQYAMFGRVFKM 104
>gi|366989661|ref|XP_003674598.1| hypothetical protein NCAS_0B01380 [Naumovozyma castellii CBS 4309]
gi|342300462|emb|CCC68222.1| hypothetical protein NCAS_0B01380 [Naumovozyma castellii CBS 4309]
Length = 147
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 64/107 (59%), Gaps = 12/107 (11%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTM 59
MSN LF+DIF V ++DP +++KV RIEA S + L LD+N+EL+P+ D+ T+
Sbjct: 1 MSN-TLFDDIFTVSEVDP--GRYNKVCRIEATSTTQEQCKLTLDINTELFPVSNNDQLTI 57
Query: 60 ALAHTLNLDGTPDTG-------YYTPGA-RKTLADKYEYIMHGKLFK 98
+A +L+++ + + P +++AD Y+Y+M+G +K
Sbjct: 58 TIASSLSIESDSNANQDAAQRSWRPPQPDERSIADDYDYVMYGTAYK 104
>gi|294900305|ref|XP_002776955.1| RNA polymerase II B8 subunit, putative [Perkinsus marinus ATCC
50983]
gi|239884250|gb|EER08771.1| RNA polymerase II B8 subunit, putative [Perkinsus marinus ATCC
50983]
Length = 87
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 6/91 (6%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+FED+F V+ ID +KFD+VSRI+A S + + +D+N+E+YP+ D +A+A
Sbjct: 3 AIFEDMFDVKNIDD--EKFDRVSRIKAQSHTYNAEIEVDINTEIYPIGSSDTLRIAIASA 60
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGK 95
+ + GY A+ + D YEY M+GK
Sbjct: 61 AD----ANEGYQGEAAQPGIIDDYEYAMYGK 87
>gi|380024942|ref|XP_003696245.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Apis florea]
gi|380024946|ref|XP_003696247.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Apis florea]
Length = 115
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 6/80 (7%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGARK--TLADKYEYIMHGK 95
M ++LD+NS LYPM +GDKF + LA TL DG PD G + ++ + AD +EY+M G
Sbjct: 1 MDLILDINSWLYPMELGDKFRLVLATTLREDGYPDGGEWNATEQEGGSRADSFEYVMSGM 60
Query: 96 LFKI-GDEGSGK---SLKAY 111
+++I GDE S + L AY
Sbjct: 61 VYRIEGDEASNEPSSRLSAY 80
>gi|322709906|gb|EFZ01481.1| DNA-directed RNA polymerases i, ii, and iii 145 kDa polypeptide
[Metarhizium anisopliae ARSEF 23]
Length = 130
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 8/112 (7%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
+ LFE+ F V + D K+D+V+RI S + M+LD+N EL+P D + L+
Sbjct: 7 DATLFEESFTVTEYDQ--SKYDRVARISCTSADSQTVMVLDINIELFPCARSDSLHVVLS 64
Query: 63 HTLNLDGTP--DTGYYTPG----ARKTLADKYEYIMHGKLFKIGDEGSGKSL 108
TL+ DG+ D G+ G A TLAD Y+Y+ +GK++K + G ++
Sbjct: 65 TTLSPDGSKEDDKGWRDVGKGGDAPATLADLYDYVCYGKIYKFEETYDGNTM 116
>gi|154340321|ref|XP_001566117.1| putative RNA polymerase B subunit RPB8 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063436|emb|CAM39615.1| putative RNA polymerase B subunit RPB8 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 149
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
V+ ED F V ++ +G + +VSRI +Q+ + + D+NSE +P+ D+ T+ LA++
Sbjct: 6 VILEDTFTVNGVNTEGTVYLRVSRIRCVNQDGSLTITSDINSEEFPVATNDRLTIVLANS 65
Query: 65 LNLDGTPDTGYYTPGA--RKTLADKYEYIMHGKLF 97
L L G + YY R+T + +Y MHG+++
Sbjct: 66 LELGGKTGSKYYDHSVYHRETRLNDCDYAMHGRVY 100
>gi|68071555|ref|XP_677691.1| RNA polymerase subunit 8c [Plasmodium berghei strain ANKA]
gi|56497906|emb|CAH98598.1| RNA polymerase subunit 8c, putative [Plasmodium berghei]
Length = 143
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 5/106 (4%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ +LFED FV+ +D KF+KVSRI+A S D ++LDV+SEL+ +V +K +
Sbjct: 1 MASNILFEDRFVISNVD--NSKFEKVSRIKAKSTGYDAELILDVHSELF--KVEEKKAIY 56
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGK 106
LA N G D + K+L + EYIM G++FK + S +
Sbjct: 57 LALQDNFMGKNDDKTWEQADNKSL-NNIEYIMSGRIFKFEELSSER 101
>gi|213405034|ref|XP_002173289.1| DNA-directed RNA polymerase I [Schizosaccharomyces japonicus
yFS275]
gi|212001336|gb|EEB06996.1| DNA-directed RNA polymerase I [Schizosaccharomyces japonicus
yFS275]
Length = 125
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 16/106 (15%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS +L ++IF V D + +K+ +VSRI A S D+ ++LD+N++LYP+ G F++
Sbjct: 1 MSESILVDEIFTVS--DVNSEKYQRVSRITASSAQNDLDLILDINTQLYPLEKGATFSLQ 58
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGK 106
L LN +PD L + +YIM+GK++++ + K
Sbjct: 59 LTSNLN---SPD-----------LKEAADYIMYGKVYRVEEAKDDK 90
>gi|256071684|ref|XP_002572169.1| DNA-directed rna polymerase subunit rpb8 [Schistosoma mansoni]
gi|353229934|emb|CCD76105.1| putative DNA-directed rna polymerase subunit rpb8 [Schistosoma
mansoni]
Length = 156
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 62/109 (56%), Gaps = 9/109 (8%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT- 64
L EDIF V+ +D DGKKFDKVSR+ S++ M ++LD+++ +Y + GDKF M L T
Sbjct: 4 LLEDIFDVKDVDKDGKKFDKVSRLFCESESFKMGLILDIHALIYGLSKGDKFRMVLTKTL 63
Query: 65 LNLDGTPDTGYYTPGARKTLADK--------YEYIMHGKLFKIGDEGSG 105
LN GT A +K ++Y+ +GK+++I + SG
Sbjct: 64 LNELGTDADDDDEDDAADETDEKLANSKMAEFDYVCYGKIYRIETQDSG 112
>gi|427786179|gb|JAA58541.1| Hypothetical protein [Rhipicephalus pulchellus]
Length = 113
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKL 96
M ++LDVN+ LYP+ +GDKF + +A TL DG PD G Y P + AD +E +M+GK+
Sbjct: 1 MDLILDVNTMLYPVDLGDKFRLVIATTLREDGYPDDGEYNPADTGPSRADSFECVMYGKI 60
Query: 97 FKI-GDEGSGKSLK 109
++I GD+ +G++ +
Sbjct: 61 YRIEGDDITGETTR 74
>gi|427777847|gb|JAA54375.1| Hypothetical protein [Rhipicephalus pulchellus]
Length = 113
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPG-ARKTLADKYEYIMHGKL 96
M ++LDVN+ LYP+ +GDKF + +A TL DG PD G Y P + AD +E +M+GK+
Sbjct: 1 MDLILDVNTMLYPVDLGDKFRLVIATTLREDGYPDDGEYNPADTGPSRADSFECVMYGKI 60
Query: 97 FKI-GDEGSGKSLK 109
++I GD+ +G++ +
Sbjct: 61 YRIXGDDITGETTR 74
>gi|156086062|ref|XP_001610440.1| RNA polymerase subunit 8c [Babesia bovis T2Bo]
gi|154797693|gb|EDO06872.1| RNA polymerase subunit 8c, putative [Babesia bovis]
Length = 145
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S +FED FVV ID KF++VSRI A S D +LLD+NS+++P+ V + +
Sbjct: 3 SATCVFEDRFVVRSID--NSKFERVSRITAKSTGFDAELLLDINSDIFPVTVKSMLHILM 60
Query: 62 AHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGS 104
+ L G+ D +L YEY M+GK+FK D S
Sbjct: 61 TNNLLPSGS-DVNLSDYSDLPSLMRDYEYAMYGKIFKFEDVSS 102
>gi|70950387|ref|XP_744521.1| RNA polymerase subunit 8c [Plasmodium chabaudi chabaudi]
gi|56524509|emb|CAH79735.1| RNA polymerase subunit 8c, putative [Plasmodium chabaudi chabaudi]
Length = 143
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 62/106 (58%), Gaps = 5/106 (4%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ +LFED FV+ +D KF+KVSRI+A S D ++LDV+SEL+ +V +K +
Sbjct: 1 MASNILFEDRFVISNVD--NSKFEKVSRIKAKSTGYDAELILDVHSELF--KVEEKKAIY 56
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGK 106
LA N G D + K+L + EYIM G++FK + S +
Sbjct: 57 LALQDNFMGYSDDKTWEQTDNKSL-NNIEYIMSGRIFKFEELSSER 101
>gi|161899461|ref|XP_001712964.1| DNA directed RNA polymerase subunit I/II/III [Bigelowiella
natans]
gi|1401210|gb|AAD05371.1| putative RNA polymerase II subunit [Bigelowiella natans]
gi|75756459|gb|ABA27352.1| DNA directed RNA polymerase subunit I/II/III [Bigelowiella
natans]
Length = 147
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 8 EDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNL 67
DI + DPDGK ++KVSRI A S +M + D+NS L+P+ VGD +++ +T++
Sbjct: 11 NDIIKILSKDPDGKLYEKVSRIIAQSYYLNMELWFDINSHLFPIYVGDSLNLSI-YTISD 69
Query: 68 DGTPDTGYYTPGARKTLADKYEYIMHGKLFKI 99
+ T L DKYEY M GK+F I
Sbjct: 70 ESFNST--IKDNQFSYLVDKYEYFMIGKVFNI 99
>gi|399216603|emb|CCF73290.1| unnamed protein product [Babesia microti strain RI]
Length = 140
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 56/96 (58%), Gaps = 6/96 (6%)
Query: 4 IVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAH 63
+VLFED F+V ID K+++V+RI A S D ++LDVNS+L+P+R + L +
Sbjct: 1 MVLFEDRFIVRGID--NSKYERVTRITAKSTGFDAEIVLDVNSDLFPVRENTTLHILLTN 58
Query: 64 TLNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFK 98
L+ T D+G +L YEY M+GK+FK
Sbjct: 59 NLS---TGDSGNIEEINDFGSLVGNYEYAMYGKIFK 91
>gi|148665176|gb|EDK97592.1| polymerase (RNA) II (DNA directed) polypeptide H, isoform CRA_b
[Mus musculus]
Length = 91
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 40/50 (80%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVG 54
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +G
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLG 53
>gi|50290899|ref|XP_447882.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527193|emb|CAG60831.1| unnamed protein product [Candida glabrata]
Length = 150
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 62/105 (59%), Gaps = 14/105 (13%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTMALAHT 64
LF+DIF + ++DP +++ V RIEA S + L LD+N+ L+P++V ++ T+ +A +
Sbjct: 5 LFDDIFTISEVDP--GRYNNVCRIEAGSTTQEQCKLTLDINTNLFPVQVNEQLTVTVASS 62
Query: 65 LNL---------DGTPDTGYYTP--GARKTLADKYEYIMHGKLFK 98
L++ D T + + P ++LAD Y+Y+MHG +K
Sbjct: 63 LDVDDDDKAKVNDSTGASRSWRPPQPGDRSLADDYDYVMHGTAYK 107
>gi|430814102|emb|CCJ28617.1| unnamed protein product [Pneumocystis jirovecii]
Length = 126
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 18/110 (16%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
++ +L ++IF + +D +KFD+VSRI A S D+ M LD+NSELYP++ + ++ L
Sbjct: 4 TDTILIDEIFHINSVD--SQKFDRVSRIVAISSLQDIEMTLDINSELYPLKPDESISVQL 61
Query: 62 AHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
A TL + D +YIM+GK+++ DEG + Y
Sbjct: 62 ASTL---------------QDAFKDSADYIMYGKVYRF-DEGEKDRVSVY 95
>gi|149019877|gb|EDL78025.1| rCG36803, isoform CRA_c [Rattus norvegicus]
Length = 59
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 40/50 (80%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVG 54
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +G
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLG 53
>gi|1515321|emb|CAA68926.1| RPB8 [Schizosaccharomyces pombe]
gi|1515323|emb|CAA68927.1| RPB8 [Schizosaccharomyces pombe]
Length = 126
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 61/111 (54%), Gaps = 17/111 (15%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS VL ++IF V +D +K+ +VSRI A S DM + LD+NS++YP+ F++
Sbjct: 1 MSESVLLDEIFTVTSVDK--QKYQRVSRITAVSGQNDMNLTLDINSQIYPLEKDATFSLQ 58
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+ LN +PD L + +YIM+GK++++ +E + + Y
Sbjct: 59 ITSNLN---SPD-----------LKEAADYIMYGKVYRV-EEAKDEKVSVY 94
>gi|19112707|ref|NP_595915.1| DNA-directed RNA polymerase I, II and III subunit Rpb8
[Schizosaccharomyces pombe 972h-]
gi|3334495|sp|Q92399.2|RPAB3_SCHPO RecName: Full=DNA-directed RNA polymerases I, II, and III subunit
RPABC3; Short=RNA polymerases I, II, and III subunit
ABC3; AltName: Full=DNA-directed RNA polymerases I, II,
and III 14.5 kDa polypeptide; AltName: Full=RPC14
gi|256599722|pdb|3H0G|H Chain H, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599734|pdb|3H0G|T Chain T, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|2529243|dbj|BAA22803.1| RNA polymerase II subunit Rpb8 [Schizosaccharomyces pombe]
gi|2731566|gb|AAB93482.1| RNA polymerase I, II and III subunit Rpb8 [Schizosaccharomyces
pombe]
gi|2792200|gb|AAC39321.1| Rpb8 [Schizosaccharomyces pombe]
gi|3006170|emb|CAA18430.1| DNA-directed RNA polymerase I, II and III subunit Rpb8
[Schizosaccharomyces pombe]
gi|3869135|dbj|BAA34367.1| RNA polymerase II subunit Rpb8 [Schizosaccharomyces pombe]
Length = 125
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 61/111 (54%), Gaps = 17/111 (15%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS VL ++IF V +D +K+ +VSRI A S DM + LD+NS++YP+ F++
Sbjct: 1 MSESVLLDEIFTVTSVDK--QKYQRVSRITAVSGQNDMNLTLDINSQIYPLEKDATFSLQ 58
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+ LN +PD L + +YIM+GK++++ +E + + Y
Sbjct: 59 ITSNLN---SPD-----------LKEAADYIMYGKVYRV-EEAKDEKVSVY 94
>gi|326504196|dbj|BAJ90930.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 81
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 31/37 (83%)
Query: 70 TPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGK 106
TPDTGYYT RKTLADKY+Y+MHGKL+KI ++G K
Sbjct: 2 TPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDGGSK 38
>gi|358254135|dbj|GAA54160.1| DNA-directed RNA polymerases I II and III subunit RPABC3
[Clonorchis sinensis]
gi|358255898|dbj|GAA57517.1| DNA-directed RNA polymerases I II and III subunit RPABC3
[Clonorchis sinensis]
Length = 156
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 11/110 (10%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
L EDIF V+ +D DGKKFDKVSR+ S++ M ++LD+++ +Y + GDKF M L L
Sbjct: 4 LLEDIFDVKDVDKDGKKFDKVSRLFCESESFKMGLILDIHALIYRLVKGDKFRMVLTKNL 63
Query: 66 NLDGTPDTGYYTPG----------ARKTLADKYEYIMHGKLFKIGDEGSG 105
D D A +A+ ++Y+ +GK+++I SG
Sbjct: 64 LNDMITDAEDDDEDDAAEETDERLANSKMAE-FDYVCYGKIYRIEAHDSG 112
>gi|330040643|ref|XP_003239981.1| RNA polymerase II subunit [Cryptomonas paramecium]
gi|327206907|gb|AEA39083.1| RNA polymerase II subunit [Cryptomonas paramecium]
Length = 151
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 21 KKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL----NLDGTPDTGYY 76
K F KVSR+ S++ + M LDVN+E+Y + +GDK + + + L G + +
Sbjct: 29 KTFSKVSRVLVQSKDSKLQMFLDVNTEIYNLCLGDKLDIMITKVVEPVYELQGHVND--W 86
Query: 77 TPGARKTLADKYEYIMHGKLFKIGDEGSG 105
+K L D YEY+M+G +F +G EG+G
Sbjct: 87 VFNFKKELIDLYEYVMYGTVFHMGVEGNG 115
>gi|154422638|ref|XP_001584331.1| RNA polymerase Rpb8 family protein [Trichomonas vaginalis G3]
gi|121918577|gb|EAY23345.1| RNA polymerase Rpb8 family protein [Trichomonas vaginalis G3]
Length = 146
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 11 FVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLD-G 69
F +DPDGK+FD VSRI+A + D ++LD N +Y ++ F + ++ L+ D
Sbjct: 8 FRCTAVDPDGKQFDDVSRIKATTDEGDYELVLDYNCFIYEIKQDQLFQLNISTQLHSDEA 67
Query: 70 TPDTGYYTPG--ARKTLADKYEYIMHGKLF 97
+ ++ P TLA YEYIMHGK++
Sbjct: 68 SRAEEHWHPSIVENSTLAASYEYIMHGKVY 97
>gi|156103087|ref|XP_001617236.1| RNA polymerase subunit 8c [Plasmodium vivax Sal-1]
gi|148806110|gb|EDL47509.1| RNA polymerase subunit 8c, putative [Plasmodium vivax]
Length = 143
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 5/106 (4%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ +LFED FV+ +D KF+KVSRI+A S D ++LDV+SEL+ +V +K +
Sbjct: 1 MASNILFEDRFVISSVD--NSKFEKVSRIKAKSTGYDAELILDVHSELF--KVEEKKAIY 56
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGK 106
LA + D + G +L + EYIM G++FK + S +
Sbjct: 57 LALQDKILSKNDDKIWEQGENISL-NNIEYIMSGRIFKFEELSSER 101
>gi|440294275|gb|ELP87292.1| DNA-directed RNA polymerase I, II, and III subunit RPABC3, putative
[Entamoeba invadens IP1]
Length = 145
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 11 FVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGT 70
F ++ D G F+ VSR E + + + +D+N++L+P+ D + L +LN D +
Sbjct: 8 FTIKSKDAGGNVFENVSRFECEDKEGNYKIFVDINTDLFPLDTKDTIELELTTSLNFDNS 67
Query: 71 P---DTGYYTPGARKTLADKYEYIMHGKLFKIGDEGS 104
P GY + D Y+Y+MHG +FK ++ S
Sbjct: 68 PMDFKDGYTPDFGVNSKMDNYDYVMHGIVFKFVEDKS 104
>gi|389586246|dbj|GAB68975.1| RNA polymerase subunit 8c [Plasmodium cynomolgi strain B]
Length = 143
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 5/106 (4%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ +LFED FV+ +D KF+KVSRI+A S D ++LDV+SEL+ +V +K +
Sbjct: 1 MASNILFEDRFVISSVD--NSKFEKVSRIKAKSTGYDAELILDVHSELF--KVEEKKAIY 56
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGK 106
LA + D + G L + EYIM G++FK + S +
Sbjct: 57 LALQDKILNKNDDKIWEQGENIAL-NNIEYIMSGRIFKFEELSSER 101
>gi|88687068|emb|CAJ43895.1| RNA polymerase I subunit RPB8 [Trypanosoma brucei brucei]
Length = 149
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ V+ ED F V ++ +G + +VSR+ + + + DVN+ +P+ GD+ T+ L
Sbjct: 3 SSKVILEDTFTVAAVNEEGTVYSRVSRVRCTGEGGGLIITSDVNTGEFPLHSGDRLTIIL 62
Query: 62 AHTLNLDGTPDTGYYTPGA--RKTLADKYEYIMHGKLFKIGDEGS 104
++ L + +Y R T D +Y MHG+++ + GS
Sbjct: 63 TDSIELSEQAGSKHYDQSVYHRSTRLDDCDYAMHGRVYSMEVNGS 107
>gi|401408263|ref|XP_003883580.1| UDP-glucose 4-epimerase Gal10, related [Neospora caninum Liverpool]
gi|325117997|emb|CBZ53548.1| UDP-glucose 4-epimerase Gal10, related [Neospora caninum Liverpool]
Length = 150
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 11/111 (9%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS LFED F V +D KF++VSR++ S D + LDVNS+L+P V +K +
Sbjct: 1 MSIPCLFEDRFEVRSVD--CSKFERVSRLKGKSSGFDADIQLDVNSDLFP--VKEKQRLY 56
Query: 61 LAHTLNLDGTP-----DTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGK 106
+ T NL T DT +T A +Y+Y+M+GK+F+I + S +
Sbjct: 57 IGITNNLHSTSDARKDDTAAWTEPA--AYLKEYDYVMYGKIFRIEECSSER 105
>gi|413923190|gb|AFW63122.1| hypothetical protein ZEAMMB73_293944, partial [Zea mays]
gi|414588094|tpg|DAA38665.1| TPA: hypothetical protein ZEAMMB73_291772, partial [Zea mays]
Length = 53
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 31/42 (73%)
Query: 37 DMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTP 78
+M M LDV +E+Y MRVGD F M LA TLNLD + DTGYYT
Sbjct: 6 EMCMQLDVATEVYSMRVGDTFNMVLALTLNLDRSTDTGYYTQ 47
>gi|124805803|ref|XP_001350542.1| RNA polymerase subunit 8c, putative [Plasmodium falciparum 3D7]
gi|23496666|gb|AAN36222.1|AE014846_21 RNA polymerase subunit 8c, putative [Plasmodium falciparum 3D7]
Length = 145
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ +LFED FV+ +D KF+KVSRI+A S D ++LDV+SEL+ + +A
Sbjct: 1 MASNILFEDRFVISSVD--NSKFEKVSRIKAKSTGYDAELILDVHSELFKVEEKKAIYLA 58
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGK 106
L L L+ + G+ + EYIM G++FK + S +
Sbjct: 59 LQDKL-LNRNDEKGW--EQNENVPLNNIEYIMSGRIFKFEELSSER 101
>gi|237837845|ref|XP_002368220.1| RNA polymerase, putative [Toxoplasma gondii ME49]
gi|211965884|gb|EEB01080.1| RNA polymerase, putative [Toxoplasma gondii ME49]
gi|221488507|gb|EEE26721.1| RNA polymerase, putative [Toxoplasma gondii GT1]
gi|221509012|gb|EEE34581.1| RNA polymerase, putative [Toxoplasma gondii VEG]
Length = 149
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 57/101 (56%), Gaps = 8/101 (7%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS LFED F V +D KF++V+R++ S D + LDVNS+L+P++ + +
Sbjct: 1 MSIPCLFEDRFEVRSVD--CSKFERVARLKGKSSGFDADLQLDVNSDLFPVKEKQRLYIG 58
Query: 61 LAHTLNLDGTP---DTGYYTPGARKTLADKYEYIMHGKLFK 98
+ + L+ G D+ + P A +Y+Y+M+GK+F+
Sbjct: 59 ITNNLHSSGDARKDDSAWTEPAA---YLKEYDYVMYGKVFR 96
>gi|71755905|ref|XP_828867.1| RNA polymerase B subunit RPB8 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70834253|gb|EAN79755.1| RNA polymerase B subunit RPB8, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261334791|emb|CBH17785.1| RNA polymerase B subunit RPB8, putative [Trypanosoma brucei
gambiense DAL972]
Length = 149
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 2 SNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMAL 61
S+ V+ ED F V ++ +G + +VSR+ + + + DVN+ +P+ GD+ T+ L
Sbjct: 3 SSKVILEDTFTVAAVNEEGTVYSRVSRVRCTGEGGGLIITSDVNTGEFPLHSGDRLTIIL 62
Query: 62 AHTLNLDGTPDTGYYTPGA--RKTLADKYEYIMHGKLFKI 99
++ L + +Y R T D +Y MHG+++ +
Sbjct: 63 TDSIELSEQAGSKHYDQSVYHRSTRLDDCDYAMHGRVYSM 102
>gi|357017061|gb|AET50559.1| hypothetical protein [Eimeria tenella]
Length = 143
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS LFED F V +D KF++VSRI A S D ++LDV+++L P V +K +
Sbjct: 1 MSIPCLFEDRFTVRNVD--NGKFERVSRIRAKSSGLDADLILDVHNQLLP--VAEKQGLH 56
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGK 106
+ T +L G G A + Y+Y+M+GK+FK+ + S +
Sbjct: 57 IGLTNSLSGPDRKG--DGAADSQVLSGYDYVMYGKVFKLEETSSER 100
>gi|429328608|gb|AFZ80368.1| DNA-directed RNA polymerase subunit rpb8, putative [Babesia equi]
Length = 145
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
+FED F+V ID KF++V+RI A S D +LLDVNS+L P+ + + ++L
Sbjct: 7 VFEDRFLVRSIDK--SKFERVARISAKSTGFDAELLLDVNSDLLPVNNKAMLHILITNSL 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFK 98
G+ D TL YEY M+GK+FK
Sbjct: 65 LPSGS-DVNLSECNDIPTLLGDYEYAMYGKIFK 96
>gi|403220616|dbj|BAM38749.1| DNA-directed RNA polymerases I, II, and III subunit [Theileria
orientalis strain Shintoku]
Length = 145
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
+FED F+V ID KF++VSR+ A S D +LLDVNS+L + + + ++L
Sbjct: 7 VFEDRFLVRSID--NSKFERVSRLSAKSTGFDAELLLDVNSDLLQVNSKAMLHILITNSL 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGS 104
G+ +P L D YEY M+GK+FK + S
Sbjct: 65 LPSGSEVNLSESPDVPSLLGD-YEYAMYGKIFKFEEVSS 102
>gi|221061289|ref|XP_002262214.1| rna polymerase subunit 8c [Plasmodium knowlesi strain H]
gi|193811364|emb|CAQ42092.1| rna polymerase subunit 8c, putative [Plasmodium knowlesi strain H]
Length = 143
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
M++ VLFED FV+ +D KF+KVSRI+A S D ++LDV+SEL+ +V +K +
Sbjct: 1 MASNVLFEDRFVISSVD--NSKFEKVSRIKAKSTGYDAELILDVHSELF--KVEEKKAIY 56
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGK 106
LA + D + L + EYIM G++FK + S +
Sbjct: 57 LALQDKILNKNDDKIWEQSENIAL-NNIEYIMSGRIFKFEELSSER 101
>gi|167381103|ref|XP_001735574.1| DNA-directed RNA polymerase subunit rpb8 [Entamoeba dispar
SAW760]
gi|165902372|gb|EDR28222.1| DNA-directed RNA polymerase subunit rpb8, putative [Entamoeba
dispar SAW760]
Length = 143
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 11 FVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGT 70
F V D GK F+ VSR + + D+ + +D+N++L+P+ D+ + L TLN DG+
Sbjct: 8 FKVIAKDIGGKLFEGVSRFKLEGE--DLTVFVDINTDLFPLEENDRIKLDLTKTLNRDGS 65
Query: 71 P---DTGYYTPGARKTLADKYEYIMHGKLFK 98
P GY + T D ++Y+M G +FK
Sbjct: 66 PMDIHQGYSDNFGKNTKMDDFDYVMSGMVFK 96
>gi|385302364|gb|EIF46498.1| dna-directed rna polymerases i [Dekkera bruxellensis AWRI1499]
Length = 137
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 11/104 (10%)
Query: 16 IDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGY 75
I D +KF ++ + + D + +D+N+EL+P+ D T+ LA +L++D + D G
Sbjct: 6 IPADTRKF--AGSLQKSTTSPDTKITIDINTELFPVAKMDTLTITLAKSLSIDDSGDXGM 63
Query: 76 YTPGA--------RKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+T ++TL D Y+Y+M+G ++K +EGS + Y
Sbjct: 64 FTANGSWRPPKPNQRTLMDDYDYVMYGTVYKF-EEGSNDKISLY 106
>gi|83282657|ref|XP_729865.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
[Plasmodium yoelii yoelii 17XNL]
gi|23488908|gb|EAA21430.1| DNA-directed RNA polymerases i, ii, and iii 17.1 kDa polypeptide
[Plasmodium yoelii yoelii]
Length = 160
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 18/121 (14%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPM--------- 51
M++ +LFED FV+ +D KF+KVSRI+A S D ++LDV+SEL+ +
Sbjct: 1 MASNILFEDRFVISNVD--NSKFEKVSRIKAKSTGYDAELILDVHSELFKVEEKKVAQII 58
Query: 52 ------RVGDKFTMALAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSG 105
++ + LA N G D + K+L + EYIM G++FK + S
Sbjct: 59 KKREKKKLNHHHAIYLALQDNFMGKNDEKTWEQTDNKSL-NNIEYIMSGRIFKFEELSSE 117
Query: 106 K 106
+
Sbjct: 118 R 118
>gi|67483140|ref|XP_656855.1| RNA polymerase subunit Rpb8 [Entamoeba histolytica HM-1:IMSS]
gi|56474082|gb|EAL51470.1| RNA polymerase subunit Rpb8 [Entamoeba histolytica HM-1:IMSS]
gi|407037109|gb|EKE38496.1| RNA polymerase subunit Rpb8, putative [Entamoeba nuttalli P19]
gi|449709745|gb|EMD48952.1| RNA polymerase subunit Rpb8, putative [Entamoeba histolytica
KU27]
Length = 143
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 11 FVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGT 70
F V D GK F+ VSR + + D+ + +D+N++L+P+ D+ + L TLN DG+
Sbjct: 8 FKVIAKDIGGKIFEGVSRFKLEGE--DLTVFVDINTDLFPLEEHDRIKLDLTKTLNRDGS 65
Query: 71 P---DTGYYTPGARKTLADKYEYIMHGKLFK 98
P GY + T D ++Y+M G +FK
Sbjct: 66 PMDIHQGYSDNFGKNTKMDDFDYVMSGMVFK 96
>gi|413923191|gb|AFW63123.1| hypothetical protein ZEAMMB73_293944 [Zea mays]
gi|414588095|tpg|DAA38666.1| TPA: hypothetical protein ZEAMMB73_291772 [Zea mays]
Length = 155
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 30/40 (75%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYT 77
M M LDV +E+Y MRVGD F M LA TLNLD + DTGYYT
Sbjct: 1 MCMQLDVATEVYSMRVGDTFNMVLALTLNLDRSTDTGYYT 40
>gi|399949771|gb|AFP65428.1| RNA polymerase II subunit [Chroomonas mesostigmatica CCMP1168]
Length = 167
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 20/119 (16%)
Query: 5 VLFEDIFVVEKID------------PDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMR 52
+L +IF+VE+ID K F KVSRI A S + + +L+D+N+E+Y ++
Sbjct: 6 ILVNEIFIVEEIDMVPTKINNVLTKVKNKIFSKVSRIFASSISRKIQILIDINTEIYKIQ 65
Query: 53 VGDKFTMALAHT--LNLDGTPDTGYYTPGARKT------LADKYEYIMHGKLFKIGDEG 103
GD +++ LN++G K L D YEY+M+G ++ G +G
Sbjct: 66 EGDILELSIVFPPFLNIEGIKCNENSNSSIEKLFLNSHDLIDSYEYVMYGTVYHSGIDG 124
>gi|290562742|gb|ADD38766.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Lepeophtheirus salmonis]
Length = 157
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 8/103 (7%)
Query: 3 NIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALA 62
NIV EDIF ID DGK FD+VSR+ S++ M ++LD +S+L+ ++ GDK + +
Sbjct: 7 NIV--EDIFDARVIDKDGKCFDQVSRVMGESESFKMNIILDYHSQLFQIKKGDKLRIIVT 64
Query: 63 HTLNLD--GTPDTGYYTPGARKTLA----DKYEYIMHGKLFKI 99
+L D D + LA ++++Y+ +GK+++I
Sbjct: 65 KSLLGDTMADADDEDACDETEEKLANSKMNEFDYVCYGKVYRI 107
>gi|353238931|emb|CCA70861.1| hypothetical protein PIIN_04796 [Piriformospora indica DSM 11827]
Length = 88
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 16 IDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
++ DG K+++VSR++A S N M + LD N ELYP+R + T+ LA +L
Sbjct: 5 LNVDGNKYERVSRLQARSSNLGMELSLDFNHELYPLRPNETITLVLASSL 54
>gi|71032237|ref|XP_765760.1| RNA polymerase subunit [Theileria parva strain Muguga]
gi|68352717|gb|EAN33477.1| RNA polymerase subunit, putative [Theileria parva]
Length = 145
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
+FED F+V ID KF++VSR+ A S D +LLD NS+L + + + ++L
Sbjct: 7 VFEDRFLVRSID--NSKFERVSRLSAKSTGFDAELLLDFNSDLLQVYNKQVLHILITNSL 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGS 104
L D +L YEY M+GK+FK + S
Sbjct: 65 -LPSGSDVNLSESVDIPSLLGDYEYAMYGKIFKFEEVSS 102
>gi|84999542|ref|XP_954492.1| DNA-directed RNA polymerases i, ii, and iii 17.1 kDa polypeptide
[Theileria annulata]
gi|65305490|emb|CAI73815.1| DNA-directed RNA polymerases i, ii, and iii 17.1 kDa polypeptide,
putative [Theileria annulata]
Length = 145
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 6 LFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65
+FED F+V ID KF++VSR+ A S D +LLD NS+L + + + ++L
Sbjct: 7 VFEDRFLVRSID--NSKFERVSRLSAKSTGFDAELLLDYNSDLLQVYNKQVLHILITNSL 64
Query: 66 NLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGS 104
L D +L YEY M+GK+FK + S
Sbjct: 65 -LPSGSDVNLSESVDIPSLLGDYEYAMYGKIFKFEEVSS 102
>gi|326926076|ref|XP_003209231.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3-like [Meleagris gallopavo]
Length = 116
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 54 GDKFTMALAHTLNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGS 104
GDKF + +A TL DGT D G Y P R + AD++EY+M+GK+++I GDE S
Sbjct: 19 GDKFRLVIASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETS 71
>gi|118345758|ref|XP_976709.1| RNA polymerase Rpb8 family protein [Tetrahymena thermophila]
gi|89288126|gb|EAR86114.1| RNA polymerase Rpb8 family protein [Tetrahymena thermophila SB210]
Length = 144
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 23 FDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGA-- 80
F KV R+ S N ++ + +D++++LY M+ G+++ + + +L + D G +
Sbjct: 23 FSKVERVVLVSDN-NIKIEIDIHTDLYSMKKGNQYWVMITSSLG-NFQEDKGIFVSEEFD 80
Query: 81 RKTLADKYEYIMHGKLFKIGDEGSGKSLKAYET 113
R+++ DK+EY+MHGK++ + + K++ + +
Sbjct: 81 RESIKDKFEYVMHGKIYNMNSDNKAKTVSIFAS 113
>gi|332027637|gb|EGI67705.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3
[Acromyrmex echinatior]
Length = 201
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 17 DPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYY 76
DPDG+ ++ QN D + GDKF + L+ TL DG PD +
Sbjct: 43 DPDGRCAAPRRAASSNVQNKD----------FNERKFGDKFRLVLSTTLREDGYPDGNEW 92
Query: 77 TPGARK--TLADKYEYIMHGKLFKI-GDEGS 104
P ++ + AD +EY+M GK+++I GDE +
Sbjct: 93 NPMEQEGGSRADSFEYVMSGKVYRIEGDEAN 123
>gi|426343152|ref|XP_004038181.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC3 isoform 2 [Gorilla gorilla gorilla]
Length = 86
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 38 MYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLF 97
M ++LDVN ++YP+ +GDKF + +A TL DGT D G Y P + + Y+ +G L
Sbjct: 1 MDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTLDDGEYNPTDDRPSSSA--YVSYGGLL 58
Query: 98 KIGDEGSGKSLKAYETTTQ 116
+ +G +L +E ++
Sbjct: 59 -MRLQGDANNLHGFEVDSR 76
>gi|68062837|ref|XP_673427.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56491270|emb|CAI02289.1| hypothetical protein PB300648.00.0 [Plasmodium berghei]
Length = 49
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPM 51
M++ +LFED FV+ +D KF+KVSRI+A S D ++LDV+SEL+ +
Sbjct: 1 MASNILFEDRFVISNVD--NSKFEKVSRIKAKSTGYDAELILDVHSELFKV 49
>gi|322788214|gb|EFZ13996.1| hypothetical protein SINV_13590 [Solenopsis invicta]
Length = 60
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 55 DKFTMALAHTLNLDGTPDTGYYTPGARK--TLADKYEYIMHGKLFKI-GDEGSGK 106
DKF + LA TL DG PD + P ++ + AD +EY+M GK+++I GDE + +
Sbjct: 1 DKFRLVLATTLREDGYPDGNEWNPMEQEGGSRADSFEYVMSGKVYRIEGDEANNE 55
>gi|297847082|ref|XP_002891422.1| hypothetical protein ARALYDRAFT_891644 [Arabidopsis lyrata subsp.
lyrata]
gi|297337264|gb|EFH67681.1| hypothetical protein ARALYDRAFT_891644 [Arabidopsis lyrata subsp.
lyrata]
Length = 80
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 25 KVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
V+R +A S N +M+M L+VN+E+Y VGDKFT++
Sbjct: 13 TVTRFQATSHNLEMFMHLEVNTEVYQFAVGDKFTLS 48
>gi|160331502|ref|XP_001712458.1| rpb8 [Hemiselmis andersenii]
gi|159765906|gb|ABW98133.1| rpb8 [Hemiselmis andersenii]
Length = 155
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 16 IDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAH-TLNLDGTPDT- 73
I K F KVSRI A S + + LD+N+E+YP+ DK + N P+
Sbjct: 25 IKVKNKIFSKVSRIFAISIGNKIEVTLDINTEIYPIHDQDKLDFRIMEVNPNQKNEPNNH 84
Query: 74 GYYTPGARKTLADKYEYIMHGKLFKIGDEGS 104
+ + L + +EY+M+G +F G E
Sbjct: 85 KNWIDFFDRKLIELFEYVMYGTIFHCGIENK 115
>gi|308162943|gb|EFO65310.1| RNA polymerase II subunit Rpb8 [Giardia lamblia P15]
Length = 150
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 6 LFEDIFVVEKIDPDGKKF-DKVSRIEAHS-QNCDMYMLLDVNSELYPMRVGDKFTMALAH 63
L+ F + DP+ K+ D + R+ S + D+++ LD N ELYP + ++ +
Sbjct: 3 LYSSRFNITSFDPECVKYYDNIGRVLLESTDDTDVFLTLDYNLELYPKLNKNARSLEVQM 62
Query: 64 TLNL-----DGTPDTGYYTPGARKTLADKY---EYIMHGKLFKIGDEG 103
N+ + + D+ Y P + L D Y +Y MHG +F+ G
Sbjct: 63 LSNISYQDFNVSADSPNYDPKLSEILHDAYPDLDYAMHGTVFEFRANG 110
>gi|159112294|ref|XP_001706376.1| RNA polymerase II subunit Rpb8 [Giardia lamblia ATCC 50803]
gi|21842223|gb|AAM77739.1|AF510647_1 RNA polymerase II subunit Rpb8 [Giardia intestinalis]
gi|157434472|gb|EDO78702.1| RNA polymerase II subunit Rpb8 [Giardia lamblia ATCC 50803]
Length = 150
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 6 LFEDIFVVEKIDPDGKKF-DKVSRIEAHS-QNCDMYMLLDVNSELYP-----MRVGDKFT 58
L+ F + DP+ K+ D + R+ S + D+++ LD N ELYP R +
Sbjct: 3 LYSSRFSIASFDPECVKYYDNIGRVLLESTDDPDVFLTLDYNLELYPKLNKNARSLEVQI 62
Query: 59 MALAHTLNLDGTPDTGYYTPGARKTLADKY---EYIMHGKLFK---IGDE 102
++ + + + D+ Y P + L D Y +Y MHG +F+ +GD+
Sbjct: 63 LSSISYQDFNVSADSPNYDPKLSEILHDAYPDLDYAMHGTVFEFRAVGDK 112
>gi|357489369|ref|XP_003614972.1| hypothetical protein MTR_5g061920 [Medicago truncatula]
gi|355516307|gb|AES97930.1| hypothetical protein MTR_5g061920 [Medicago truncatula]
Length = 54
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 79 GARKTLADKYEYIMHGKLFKIGDEGSGKSLKA 110
G R+++AD YEY+M+GKL ++ EGSG KA
Sbjct: 3 GNRQSIADNYEYVMYGKLSRV-TEGSGGREKA 33
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,191,210,681
Number of Sequences: 23463169
Number of extensions: 85459887
Number of successful extensions: 163075
Number of sequences better than 100.0: 373
Number of HSP's better than 100.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 162372
Number of HSP's gapped (non-prelim): 385
length of query: 130
length of database: 8,064,228,071
effective HSP length: 96
effective length of query: 34
effective length of database: 10,106,731,143
effective search space: 343628858862
effective search space used: 343628858862
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)