BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032941
(130 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q923G2|RPAB3_MOUSE DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Mus
musculus GN=Polr2h PE=2 SV=3
Length = 150
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 81/112 (72%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DGT D G Y P R + AD++EY+M+GK+++I GDE S ++ L AY
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAY 115
>sp|P52434|RPAB3_HUMAN DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Homo
sapiens GN=POLR2H PE=1 SV=4
Length = 150
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 81/112 (72%), Gaps = 5/112 (4%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFEDIF V+ IDP+GKKFD+VSR+ S++ M ++LDVN ++YP+ +GDKF + +A T
Sbjct: 4 ILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIAST 63
Query: 65 LNLDGTPDTGYYTP-GARKTLADKYEYIMHGKLFKI-GDEGSGKS---LKAY 111
L DGT D G Y P R + AD++EY+M+GK+++I GDE S ++ L AY
Sbjct: 64 LYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAY 115
>sp|A8XT81|RPAB3_CAEBR Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3
OS=Caenorhabditis briggsae GN=rpb-8 PE=3 SV=1
Length = 148
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 71/101 (70%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
++F+D+F V+ +DPDGKKFD+VSR +++ M +++D+NS++YP++ DKF + LA T
Sbjct: 4 IIFDDMFSVKSVDPDGKKFDRVSRYFCDAESFKMELIIDINSQIYPLKQNDKFRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSG 105
L DG D G Y P A +YEY+M+GK++++ D+ SG
Sbjct: 64 LREDGLADEGEYDPKAEYPRIKQYEYVMYGKVYRLEDDDSG 104
>sp|Q54YW8|RPAB3_DICDI DNA-directed RNA polymerases I, II, and III subunit rpabc3
OS=Dictyostelium discoideum GN=polr2h PE=3 SV=1
Length = 142
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
+LFED F V++IDPDGKKFD+VSR +S+N +M + +D+ + +YP+ ++F M LA +
Sbjct: 4 ILFEDTFEVKEIDPDGKKFDRVSRFVCYSENYEMDLQIDIATHIYPLG-HERFKMVLASS 62
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAYET 113
LNLDG+ D + +LADKY+Y+M+GK+FK E S + + +
Sbjct: 63 LNLDGSSDNSGSYDTNKPSLADKYDYVMYGKIFKYQKENSSSKVSVFAS 111
>sp|Q19826|RPAB3_CAEEL Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3
OS=Caenorhabditis elegans GN=rpb-8 PE=1 SV=1
Length = 148
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 70/101 (69%)
Query: 5 VLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHT 64
++F+D+F V+ +DPDGKKFD+VSR +++ M +++D+NS++YP++ DK + LA T
Sbjct: 4 IIFDDMFKVKSVDPDGKKFDRVSRYFCDAESFKMELIIDINSQIYPLKQNDKVRLVLATT 63
Query: 65 LNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSG 105
L DG D G Y P A +YEY+M+GK++++ D+ +G
Sbjct: 64 LREDGLADEGEYDPKAEYPRIKQYEYVMYGKVYRLEDDDTG 104
>sp|P20436|RPAB3_YEAST DNA-directed RNA polymerases I, II, and III subunit RPABC3
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RPB8 PE=1 SV=1
Length = 146
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 64/106 (60%), Gaps = 11/106 (10%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTM 59
MSN LF+DIF V ++DP +++KV RIEA S D L LD+N EL+P+ D T+
Sbjct: 1 MSN-TLFDDIFQVSEVDP--GRYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTV 57
Query: 60 ALAHTLNLDGTP-----DTGYYTP--GARKTLADKYEYIMHGKLFK 98
+A +LNL+ TP T + P ++LAD Y+Y+M+G +K
Sbjct: 58 TIASSLNLEDTPANDSSATRSWRPPQAGDRSLADDYDYVMYGTAYK 103
>sp|Q92399|RPAB3_SCHPO DNA-directed RNA polymerases I, II, and III subunit RPABC3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpb8 PE=1 SV=2
Length = 125
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 61/111 (54%), Gaps = 17/111 (15%)
Query: 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMA 60
MS VL ++IF V +D +K+ +VSRI A S DM + LD+NS++YP+ F++
Sbjct: 1 MSESVLLDEIFTVTSVDK--QKYQRVSRITAVSGQNDMNLTLDINSQIYPLEKDATFSLQ 58
Query: 61 LAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGDEGSGKSLKAY 111
+ LN +PD L + +YIM+GK++++ +E + + Y
Sbjct: 59 ITSNLN---SPD-----------LKEAADYIMYGKVYRV-EEAKDEKVSVY 94
>sp|Q82685|L_IHNVW RNA-directed RNA polymerase L OS=Infectious hematopoietic necrosis
virus (strain WRAC) GN=L PE=3 SV=1
Length = 1986
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 87 KYEYIMHGKLFKIGDEGSGKSLKAYETTTQSIH 119
+ ++I HG LF IGDE K L+ Y T++ H
Sbjct: 1403 RSQHINHGALFHIGDESLAKKLRRYVLDTKTQH 1435
>sp|C7GWV6|HXT4_YEAS2 Low-affinity glucose transporter HXT4 OS=Saccharomyces cerevisiae
(strain JAY291) GN=HXT4 PE=3 SV=1
Length = 576
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 44 VNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKL 96
VNSE +P+RV K MA+A N G++TP + Y Y+ G L
Sbjct: 457 VNSETFPLRVKSK-CMAIAQACNWIWGFLIGFFTPFISNAIDFYYGYVFMGCL 508
>sp|P32467|HXT4_YEAST Low-affinity glucose transporter HXT4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=HXT4 PE=1 SV=1
Length = 576
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 44 VNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKL 96
VNSE +P+RV K MA+A N G++TP + Y Y+ G L
Sbjct: 457 VNSETFPLRVKSK-CMAIAQACNWIWGFLIGFFTPFISGAIDFYYGYVFMGCL 508
>sp|A6ZT02|HXT4_YEAS7 Low-affinity glucose transporter HXT4 OS=Saccharomyces cerevisiae
(strain YJM789) GN=HXT4 PE=3 SV=1
Length = 576
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 44 VNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGARKTLADKYEYIMHGKL 96
VNSE +P+RV K MA+A N G++TP + Y Y+ G L
Sbjct: 457 VNSETFPLRVKSK-CMAIAQACNWIWGFLIGFFTPFISGAIDFYYGYVFMGCL 508
>sp|Q82707|L_IHNVO RNA-directed RNA polymerase L OS=Infectious hematopoietic necrosis
virus (strain Oregon69) GN=L PE=3 SV=1
Length = 1986
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 87 KYEYIMHGKLFKIGDEGSGKSLKAYETTTQSIH 119
+ ++I HG LF IGDE K L+ Y T++ H
Sbjct: 1403 RSQHINHGALFHIGDESLAKKLRRYVLDTKTQH 1435
>sp|A9B5Y6|KCY_HERA2 Cytidylate kinase OS=Herpetosiphon aurantiacus (strain ATCC 23779
/ DSM 785) GN=cmk PE=3 SV=1
Length = 229
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 57 FTMALAHTLNLDGTPDTGYYTPGARKTLADKYEYI 91
FTM HT+ +DG +G T G K LAD + YI
Sbjct: 3 FTMTTPHTIAIDGPAASGKSTLG--KLLADHFGYI 35
>sp|P93212|14337_SOLLC 14-3-3 protein 7 OS=Solanum lycopersicum GN=TFT7 PE=2 SV=2
Length = 252
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 49 YPMRVGDKFTMALAHTLN-----LDGTPDTGYYTPGARKTLADKYEYIMHGKLFKIGD-- 101
Y RV D+ T + L+ L + TG T K D Y Y+ FK GD
Sbjct: 86 YRQRVEDELTKICSDILSVIDEHLVPSSTTGESTVFYYKMKGDYYRYLAE---FKAGDDR 142
Query: 102 -EGSGKSLKAYETTT 115
E S +SLKAYE T
Sbjct: 143 KEASEQSLKAYEAAT 157
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,297,305
Number of Sequences: 539616
Number of extensions: 2063172
Number of successful extensions: 3816
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3801
Number of HSP's gapped (non-prelim): 18
length of query: 130
length of database: 191,569,459
effective HSP length: 96
effective length of query: 34
effective length of database: 139,766,323
effective search space: 4752054982
effective search space used: 4752054982
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)