Query 032941
Match_columns 130
No_of_seqs 102 out of 197
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 12:37:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f3i_A DNA-directed RNA polyme 100.0 8.7E-56 3E-60 337.4 13.8 118 1-119 1-123 (150)
2 1a1d_A RNA polymerase; RPB8, O 100.0 4.6E-51 1.6E-55 310.2 13.3 115 1-119 1-123 (146)
3 3h0g_H DNA-directed RNA polyme 100.0 1.9E-47 6.6E-52 284.1 1.9 102 1-119 1-102 (125)
4 4ayb_G DNA-directed RNA polyme 97.5 0.00012 4.2E-09 54.6 4.7 86 12-118 14-102 (132)
5 3i2k_A Cocaine esterase; alpha 77.1 6.3 0.00021 33.8 7.0 53 12-65 463-528 (587)
6 3iii_A COCE/NOND family hydrol 68.3 10 0.00035 32.7 6.2 54 12-65 428-517 (560)
7 2b9v_A Alpha-amino acid ester 65.7 15 0.00052 31.9 6.9 54 12-65 506-580 (652)
8 1mpx_A Alpha-amino acid ester 59.0 29 0.00099 29.7 7.3 54 12-65 496-570 (615)
9 2e63_A KIAA1787 protein; struc 51.9 70 0.0024 23.7 7.7 72 49-122 44-138 (170)
10 4f27_A Clumping factor B; DEV- 45.0 13 0.00044 29.4 2.7 35 33-70 57-91 (363)
11 1lns_A X-prolyl dipeptidyl ami 38.2 37 0.0013 30.2 4.8 28 37-64 704-731 (763)
12 3e0e_A Replication protein A; 37.1 87 0.003 20.5 5.7 34 25-59 38-72 (97)
13 3fgx_A Rbstp2171; structural g 32.0 21 0.00072 25.6 1.8 14 83-101 12-25 (114)
14 1r17_A Fibrinogen-binding prot 28.2 36 0.0012 27.6 2.8 33 34-69 52-84 (343)
15 1ywk_A 4-deoxy-L-threo-5-hexos 24.4 64 0.0022 26.3 3.6 33 94-127 217-263 (289)
16 3sd4_A PHD finger protein 20; 22.1 54 0.0018 20.5 2.2 24 7-32 13-36 (69)
17 1n67_A Clumping factor; DEV-IG 21.6 40 0.0014 27.7 1.9 34 34-70 54-87 (359)
18 2yue_A Protein neuralized; str 21.2 1.4E+02 0.0049 21.9 4.7 71 48-122 42-126 (168)
19 2ejx_A ST0812; arcaea, unknown 20.9 46 0.0016 24.6 1.9 12 87-98 57-68 (139)
No 1
>2f3i_A DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide; RNA polymerase II, transferase; NMR {Homo sapiens}
Probab=100.00 E-value=8.7e-56 Score=337.40 Aligned_cols=118 Identities=43% Similarity=0.759 Sum_probs=110.3
Q ss_pred CCcccceeeeEEeeeECCCCCccceEeeEEEEecCCceEEEEEecccccccccCCEEEEEEeeecCCCCCCCC-CccCCC
Q 032941 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDT-GYYTPG 79 (130)
Q Consensus 1 ms~~~LFeD~F~V~~iD~dGKkFDrVSRI~a~S~~~~m~l~LDINteLyPl~~gdk~~l~LastL~~dg~~~~-~~~~~~ 79 (130)
|| ++||||+|+|++||||||||||||||.|+|++++|+|+|||||||||+++||+|+|+||+||++||++++ +|+++.
T Consensus 1 Ms-~~LfeD~F~V~~iDp~GKkfdrVSRi~~~S~~~~~~l~LDiNtelyP~~~gd~~~l~LastL~~dg~~d~~~~~~~~ 79 (150)
T 2f3i_A 1 MA-GILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTLDDGEYNPTD 79 (150)
T ss_dssp CC-CCCCEEEEEEEEEECCCCSSTTEEEEEEEESSSCCEEEEEEECTTSSSTTCCCEEEECSCCCCSSSSSTTTCSSSTT
T ss_pred CC-CceeeeeEEEEEECCCCCeeeeEEEEEEEeCCCceEEEEEecccEeccCCCCEEEEEEecccccCCCCCCCcccccc
Confidence 66 8999999999999999999999999999999999999999999999999999999999999999999876 577765
Q ss_pred CCCCcccccceEEeeeEEEeeecCCC----CeEEEEEecCccee
Q 032941 80 ARKTLADKYEYIMHGKLFKIGDEGSG----KSLKAYETTTQSIH 119 (130)
Q Consensus 80 ~~~sLaD~ydYVMyGKVYk~e~e~~~----~~~~vYiS~~~~~~ 119 (130)
++++|||+|||||||||||||+++++ ++++|||||||++.
T Consensus 80 ~~~slad~ydYVM~GkvYk~e~~~~~~~~~~~~~vY~SFGGLLM 123 (150)
T 2f3i_A 80 DRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLM 123 (150)
T ss_dssp STTSCTTTTSEEECEEEECCSSCCSSSSCCSSEEEEEEETTEEE
T ss_pred CCcccccccCEEEeeEEEEEeecCCCccccceEEEEEEcceEeE
Confidence 68899999999999999999976555 79999999999986
No 2
>1a1d_A RNA polymerase; RPB8, OB fold, eukaryotic, yeast, nucleotidyltransferase; NMR {Saccharomyces cerevisiae} SCOP: b.40.4.8 PDB: 1i3q_H 1i50_H 1i6h_H 1k83_H* 1nik_H 1nt9_H 1pqv_H 1r5u_H 1r9s_H* 1r9t_H* 1sfo_H* 1twa_H* 1twc_H* 1twf_H* 1twg_H* 1twh_H* 1wcm_H 1y1v_H 1y1w_H 1y1y_H ...
Probab=100.00 E-value=4.6e-51 Score=310.22 Aligned_cols=115 Identities=38% Similarity=0.677 Sum_probs=107.7
Q ss_pred CCcccceeeeEEeeeECCCCCccceEeeEEEEecCCceE-EEEEecccccccccCCEEEEEEeeecCCCCCC-----CC-
Q 032941 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMY-MLLDVNSELYPMRVGDKFTMALAHTLNLDGTP-----DT- 73 (130)
Q Consensus 1 ms~~~LFeD~F~V~~iD~dGKkFDrVSRI~a~S~~~~m~-l~LDINteLyPl~~gdk~~l~LastL~~dg~~-----~~- 73 (130)
|| ++||||+|+|++|||+ ||||||||.|+|++++|+ |+|||||||||+++||+|+|+||+||++||++ ++
T Consensus 1 Ms-~~LfeD~F~V~~iDp~--kfdrVSRi~~~S~~~~~~~l~LDiNtelyPv~~gd~l~l~LastL~~dg~~~~~~~d~~ 77 (146)
T 1a1d_A 1 MS-NTLFDDIFQVSEVDPG--RYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTVTIASSLNLEDTPANDSSATR 77 (146)
T ss_pred CC-CceeeeeEEEEecChh--HCceeEEEEEEeCCCCceEEEEEecccEeccCCCCEEEEEEecccCcCCCcccccccCc
Confidence 66 8999999999999996 999999999999999999 99999999999999999999999999999987 54
Q ss_pred CccCCC-CCCCcccccceEEeeeEEEeeecCCCCeEEEEEecCccee
Q 032941 74 GYYTPG-ARKTLADKYEYIMHGKLFKIGDEGSGKSLKAYETTTQSIH 119 (130)
Q Consensus 74 ~~~~~~-~~~sLaD~ydYVMyGKVYk~e~e~~~~~~~vYiS~~~~~~ 119 (130)
+|+++. ++++|||+|||||||||||||+ +++++++|||||||++.
T Consensus 78 ~~~~~~~~~~slad~ydYVM~GkvYk~e~-~~~~~~~vy~SFGGLLM 123 (146)
T 1a1d_A 78 SWRPPQAGDRSLADDYDYVMYGTAYKFEE-VSKDLIAVYYSFGGLLM 123 (146)
T ss_pred cccccccCCcccccccCEEEeeEEEEEee-cCCceEEEEEEcceEeE
Confidence 688754 6889999999999999999997 66899999999999986
No 3
>3h0g_H DNA-directed RNA polymerases I, II, and III subunit rpabc3; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-47 Score=284.11 Aligned_cols=102 Identities=32% Similarity=0.619 Sum_probs=94.7
Q ss_pred CCcccceeeeEEeeeECCCCCccceEeeEEEEecCCceEEEEEecccccccccCCEEEEEEeeecCCCCCCCCCccCCCC
Q 032941 1 MSNIVLFEDIFVVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGA 80 (130)
Q Consensus 1 ms~~~LFeD~F~V~~iD~dGKkFDrVSRI~a~S~~~~m~l~LDINteLyPl~~gdk~~l~LastL~~dg~~~~~~~~~~~ 80 (130)
||+++||||+|+|++|||+ ||||||||.|+|++++|+|+|||||||||+++||+|+|+||+||+++ + |
T Consensus 1 m~~~~LfeD~F~V~~id~~--kfdrVSRi~~~S~~~~~~l~LDiNtelyP~~~gd~~~l~LassL~~~---d--~----- 68 (125)
T 3h0g_H 1 MSESVLLDEIFTVTSVDKQ--KYQRVSRITAVSGQNDMNLTLDINSQIYPLEKDATFSLQITSNLNSP---D--L----- 68 (125)
T ss_dssp -CCCCCCCBCCCCCCEECS--SCSSCCEEECCCSSSCCCBEEECCTTTSCCCSSCCCCEECCCCCCCS---H--H-----
T ss_pred CCCcEEEEeEEEEeeCChh--hCCcEEEEEEEeCCCceEEEEEecceEEecCCCCEEEEEEeccCCch---h--h-----
Confidence 8899999999999999995 99999999999999999999999999999999999999999999972 1 4
Q ss_pred CCCcccccceEEeeeEEEeeecCCCCeEEEEEecCccee
Q 032941 81 RKTLADKYEYIMHGKLFKIGDEGSGKSLKAYETTTQSIH 119 (130)
Q Consensus 81 ~~sLaD~ydYVMyGKVYk~e~e~~~~~~~vYiS~~~~~~ 119 (130)
||+|||||||||||+|+ +++++++|||||||+..
T Consensus 69 ----ad~ydYVMyGkvYk~e~-~~~~~~~vy~SFGGLLM 102 (125)
T 3h0g_H 69 ----KEAADYIMYGKVYRVEE-AKDEKVSVYVSFGGLLM 102 (125)
T ss_dssp ----HHSSSEEECCCCCCEEC-CSSSCEEECCEETTEEC
T ss_pred ----hccccEEEEeEEEEEee-cCCceEEEEEEecCEEE
Confidence 89999999999999985 46899999999999875
No 4
>4ayb_G DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_G 2y0s_G 2waq_G 4b1o_G 4b1p_V 3hkz_G
Probab=97.47 E-value=0.00012 Score=54.57 Aligned_cols=86 Identities=10% Similarity=0.190 Sum_probs=67.9
Q ss_pred EeeeECCCCCccceEeeEEEEecCCceEEEEEecccccccccCCEEEEEEeeecCCCCCCCCCccCCCCCCCcccccceE
Q 032941 12 VVEKIDPDGKKFDKVSRIEAHSQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGTPDTGYYTPGARKTLADKYEYI 91 (130)
Q Consensus 12 ~V~~iD~dGKkFDrVSRI~a~S~~~~m~l~LDINteLyPl~~gdk~~l~LastL~~dg~~~~~~~~~~~~~sLaD~ydYV 91 (130)
+|++|.| .+.-.+.|+.+++. +.++++|+|.+|.++.+||++++.++.+.- ...+. |++
T Consensus 14 kI~sIek--g~l~~l~i~~~~C~--d~~I~~Di~~~i~~f~~gekV~i~ISrekp----------------~~~~~-dFC 72 (132)
T 4ayb_G 14 EINSIER--GSLKNLSIIHMSCN--DFNISFDIIDSINIFSQKEKVKAFISKNRL----------------SYTND-DFC 72 (132)
T ss_dssp CCCCEEE--CSSTTEEEEECCBS--SEEEEEEEESTTCCCCSSCCCEEEEESSCC----------------CCCTT-SEE
T ss_pred EEeeEcc--cccCCeEEEEEecC--CEEEEEEhhhhhhcccCCCeEEEEEecCCc----------------ccccC-ccc
Confidence 5778888 78899999999885 499999999999999999999999987532 23344 688
Q ss_pred EeeeEEEeeec---CCCCeEEEEEecCcce
Q 032941 92 MHGKLFKIGDE---GSGKSLKAYETTTQSI 118 (130)
Q Consensus 92 MyGKVYk~e~e---~~~~~~~vYiS~~~~~ 118 (130)
=||-|...... .++++-.+.+|..|.+
T Consensus 73 GhGYvVt~~k~~~~~~~~~~~~iISl~GlL 102 (132)
T 4ayb_G 73 GHGYIVTELKDSSSNNGNRYITIISLFGLL 102 (132)
T ss_dssp BCEEEEETTTTEEEETTEEEEEEESCCHHH
T ss_pred cceEEEEEeecccccCCceeEEEEEeeeEE
Confidence 88988755321 2467888999988764
No 5
>3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A
Probab=77.12 E-value=6.3 Score=33.77 Aligned_cols=53 Identities=9% Similarity=0.079 Sum_probs=41.4
Q ss_pred EeeeECCCCCccceEeeEEEE-e------------cCCceEEEEEecccccccccCCEEEEEEeeec
Q 032941 12 VVEKIDPDGKKFDKVSRIEAH-S------------QNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65 (130)
Q Consensus 12 ~V~~iD~dGKkFDrVSRI~a~-S------------~~~~m~l~LDINteLyPl~~gdk~~l~LastL 65 (130)
++.+++|||+. -.|++-..+ | .+.-.++.++++.--+-+++|.+++|.|+++-
T Consensus 463 ~L~dV~pdG~~-~~vt~g~lr~~~r~~~~~~~~l~pg~~~~v~i~L~~~~~~f~~Ghrlrl~i~ss~ 528 (587)
T 3i2k_A 463 KLVDVFPDGRA-IALCDGIVRMRYRETLVNPTLIEAGEIYEVAIDMLATSNVFLPGHRIMVQVSSSN 528 (587)
T ss_dssp EEEEECTTSCE-EEEEEEEEEGGGSSCSSSCCCCCTTCCEEEEEEEEEEEEEECTTCEEEEEEESCC
T ss_pred EEEEECCCCcE-EEeeeeeeeccccccccccccCCCCCEEEEEEEehhheeEECCCCEEEEEEECCC
Confidence 56799999974 366666665 2 22346888888999999999999999999984
No 6
>3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A*
Probab=68.28 E-value=10 Score=32.74 Aligned_cols=54 Identities=11% Similarity=0.155 Sum_probs=41.4
Q ss_pred EeeeECCCCCccc----------eEeeEEEE-ec-------------------------CCceEEEEEecccccccccCC
Q 032941 12 VVEKIDPDGKKFD----------KVSRIEAH-SQ-------------------------NCDMYMLLDVNSELYPMRVGD 55 (130)
Q Consensus 12 ~V~~iD~dGKkFD----------rVSRI~a~-S~-------------------------~~~m~l~LDINteLyPl~~gd 55 (130)
++.++||+|+... +|++-..+ |. +.-..+.+++..--+-+++|.
T Consensus 428 ~L~dv~p~G~~~~~~~~~~~~~~~vt~G~lr~s~r~~d~~~s~~~~P~~~~~~~~pl~pG~~~~v~i~l~pt~~~f~~Gh 507 (560)
T 3iii_A 428 GIKKLDRRGNEVNFPDFNHIENGQVATGWLRVSHRELDQEKSSIAQPWHKHETELKLSQDEIVPVEIELLPSGTLFKQGE 507 (560)
T ss_dssp EEEEECTTSCBCCEEETTTEEEECSEEEEEEGGGCCBCTTTCCSSCCCBCCSSCCCCCTTCCEEEEEEEEEEEEEECTTC
T ss_pred EEEEECCCCcEEeccccccccCCcccceeeEcccccccccccccCCCcCCCcccccCCCCCEEEEEEEecccEEEECCCC
Confidence 4568999998654 47776666 21 123678888888888899999
Q ss_pred EEEEEEeeec
Q 032941 56 KFTMALAHTL 65 (130)
Q Consensus 56 k~~l~LastL 65 (130)
+++|.++++-
T Consensus 508 rlrl~Isss~ 517 (560)
T 3iii_A 508 TLEVVVKGSE 517 (560)
T ss_dssp EEEEEEESSC
T ss_pred EEEEEEeccC
Confidence 9999999975
No 7
>2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A
Probab=65.68 E-value=15 Score=31.89 Aligned_cols=54 Identities=7% Similarity=0.031 Sum_probs=41.8
Q ss_pred EeeeECCCCCc--------cceEeeEEEEec-------------CCceEEEEEecccccccccCCEEEEEEeeec
Q 032941 12 VVEKIDPDGKK--------FDKVSRIEAHSQ-------------NCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65 (130)
Q Consensus 12 ~V~~iD~dGKk--------FDrVSRI~a~S~-------------~~~m~l~LDINteLyPl~~gdk~~l~LastL 65 (130)
++.+++|||.. --.|++-...-. +...+++++.+.--+-+++|.+++|.|+++-
T Consensus 506 ~L~DV~pdg~~~~~~~~g~~~~i~~g~~r~~~r~~~~~~~~l~pg~~~~v~v~L~~~~~~f~~GhRlrl~v~ss~ 580 (652)
T 2b9v_A 506 KLIDVQPAMTPDDPKMGGYELPVSMDIFRGRYRKDFAKPEALQPDATLHYHFTLPAVNHVFAKGHRIMVQIQSSW 580 (652)
T ss_dssp EEEEECCSCCTTSGGGTTCEEEEEEEEEEGGGSSCSSSCCCCCTTCCEEEEEECCCEEEEECTTCEEEEEEESCC
T ss_pred EEEEECCCCcccccccCCceEEEeeeeEeccccCCccccccCCCCcEEEEEEEeccceeEECCCCEEEEEEecCC
Confidence 56789999863 345666655521 2347899999999999999999999999984
No 8
>1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21
Probab=58.96 E-value=29 Score=29.68 Aligned_cols=54 Identities=11% Similarity=0.099 Sum_probs=40.0
Q ss_pred EeeeECCCCCc--------cceEeeEEEEe-------------cCCceEEEEEecccccccccCCEEEEEEeeec
Q 032941 12 VVEKIDPDGKK--------FDKVSRIEAHS-------------QNCDMYMLLDVNSELYPMRVGDKFTMALAHTL 65 (130)
Q Consensus 12 ~V~~iD~dGKk--------FDrVSRI~a~S-------------~~~~m~l~LDINteLyPl~~gdk~~l~LastL 65 (130)
++.+++|||.. --.|++-...- .+.-.+++++++.--+-+++|.+++|.|+++-
T Consensus 496 ~L~Dv~pdg~~~~~~~~g~~~~i~~g~~r~~~r~~~~~~~~l~pg~~~~v~i~L~~~~~~f~~Ghrlrl~v~ss~ 570 (615)
T 1mpx_A 496 KLIDVYPEEMASNPKMGGYELPVSLAIFRGRYRESFSTPKPLTSNQPLAFQFGLPTANHTFQPGHRVMVQVQSSL 570 (615)
T ss_dssp EEEEECCSCCTTSGGGTTCEEEEEEEEEEGGGSSCSSSCCCCCTTCCEEEEEECCCEEEEECTTCEEEEEEESCC
T ss_pred EEEEECCCCcccccccCCeEEEEecceEeeeccCccccccccCCCCEEEEEEEeccceeEECCCCEEEEEEecCC
Confidence 45688999853 23445544441 12347899999999999999999999999984
No 9
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.89 E-value=70 Score=23.66 Aligned_cols=72 Identities=19% Similarity=0.458 Sum_probs=41.3
Q ss_pred cccccCCEEEEEEeeecC-CCCC---------CCCCccCCCCCCCcccccceEEee-eEEE----e-eec-------CCC
Q 032941 49 YPMRVGDKFTMALAHTLN-LDGT---------PDTGYYTPGARKTLADKYEYIMHG-KLFK----I-GDE-------GSG 105 (130)
Q Consensus 49 yPl~~gdk~~l~LastL~-~dg~---------~~~~~~~~~~~~sLaD~ydYVMyG-KVYk----~-e~e-------~~~ 105 (130)
-||+.|++|.|.+...-. -.|. |.. -+.+.....|.+.| .||+| .|.+ + |+- ..|
T Consensus 44 rPl~~~E~~~v~I~~~~~~wsG~l~~GvT~~dP~~-l~lP~~~~~L~~~~-Wv~~~~~v~~ng~~~~e~~~~~l~~l~~G 121 (170)
T 2e63_A 44 EPLRDGRVFTVRIDRKVNSWSGSIEIGVTALDPSV-LDFPSSATGLKGGS-WVVSGCSVLRDGRSVLEEYGQDLDQLGEG 121 (170)
T ss_dssp EEECTTCEEEEEEEEECCSSCCCCEEEEESSCTTS-CCCCSSGGGCCSSE-EEESSSEEEESSCEEEESCSSCGGGCCSS
T ss_pred CCCCCCCEEEEEEEeecCCcceeEEEEEEccChhh-ccCCCChhhCCCCe-EEEeccccccCCcccchhccccccccCCC
Confidence 599999999999865422 2332 111 11111123465544 45554 2221 1 100 157
Q ss_pred CeEEEEEecCcceeeee
Q 032941 106 KSLKAYETTTQSIHYYF 122 (130)
Q Consensus 106 ~~~~vYiS~~~~~~~~~ 122 (130)
+.+.++++..+-+||+.
T Consensus 122 d~ig~~~~~~G~l~~~i 138 (170)
T 2e63_A 122 DRVGVERTVAGELRLWV 138 (170)
T ss_dssp CCEEEEECTTSCEEEEE
T ss_pred CEEEEEEcCCcEEEEEE
Confidence 99999999999999883
No 10
>4f27_A Clumping factor B; DEV-IGG fold, protein-peptide complex, fibronogen, cell SURF adhesion-blood clotting complex; 1.92A {Staphylococcus aureus} PDB: 4f20_A 4f24_A 4f1z_A 3au0_A 3at0_A 3asw_A
Probab=44.98 E-value=13 Score=29.40 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=26.2
Q ss_pred ecCCceEEEEEecccccccccCCEEEEEEeeecCCCCC
Q 032941 33 SQNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGT 70 (130)
Q Consensus 33 S~~~~m~l~LDINteLyPl~~gdk~~l~LastL~~dg~ 70 (130)
++.+.+....+++- .+++||.|+|.|...|.+.|.
T Consensus 57 ~~~~~l~~~f~~~~---~vk~GD~fti~lp~~l~~~~~ 91 (363)
T 4f27_A 57 SGNTFMAANFKVTG---QVKSGDYFTAKLPDSVTGNGD 91 (363)
T ss_dssp TCCEEEEEEEEESS---CCCTTCEEEEECCTTEESSBT
T ss_pred CceEEEEEEEEcCC---CCCCCCEEEEEcCCceEeccc
Confidence 44455666666654 389999999999999987653
No 11
>1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21
Probab=38.20 E-value=37 Score=30.21 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=26.1
Q ss_pred ceEEEEEecccccccccCCEEEEEEeee
Q 032941 37 DMYMLLDVNSELYPMRVGDKFTMALAHT 64 (130)
Q Consensus 37 ~m~l~LDINteLyPl~~gdk~~l~Last 64 (130)
-.+++++.+.-.|-+++|.+++|.|+++
T Consensus 704 ~~~v~v~L~~~~~~f~~GhrLrl~I~ss 731 (763)
T 1lns_A 704 WFTIKFELQPTIYHLEKADKLRVILYST 731 (763)
T ss_dssp CEEEEEECCCEEEEECTTCEEEEEEESC
T ss_pred EEEEEEEeccceEEECCCCEEEEEEEcC
Confidence 4689999999999999999999999997
No 12
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=37.14 E-value=87 Score=20.54 Aligned_cols=34 Identities=6% Similarity=0.107 Sum_probs=21.0
Q ss_pred eEeeEEEEecCCceEEE-EEecccccccccCCEEEE
Q 032941 25 KVSRIEAHSQNCDMYML-LDVNSELYPMRVGDKFTM 59 (130)
Q Consensus 25 rVSRI~a~S~~~~m~l~-LDINteLyPl~~gdk~~l 59 (130)
+|..+...-++..+.++ -|=..++ ++++||.+.+
T Consensus 38 ~v~~~~l~DeTG~I~~tlW~~~~~~-~i~~Gdvv~i 72 (97)
T 3e0e_A 38 QLKSLFLKDDTGSIRGTLWNELADF-EVKKGDIAEV 72 (97)
T ss_dssp EEEEEEEEETTEEEEEEEEGGGGGC-CCCTTCEEEE
T ss_pred EEEEEEEECCCCcEEEEEECCcccc-ccCCCCEEEE
Confidence 36566665566666666 3444445 6777777766
No 13
>3fgx_A Rbstp2171; structural genomics, PSI-2, Pro structure initiative, midwest center for structural genomic structural genomics; 2.90A {Bacillus stearothermophilus}
Probab=32.01 E-value=21 Score=25.61 Aligned_cols=14 Identities=36% Similarity=0.762 Sum_probs=10.8
Q ss_pred CcccccceEEeeeEEEeee
Q 032941 83 TLADKYEYIMHGKLFKIGD 101 (130)
Q Consensus 83 sLaD~ydYVMyGKVYk~e~ 101 (130)
+|..+| ||||++..
T Consensus 12 ~lk~ky-----gk~y~v~~ 25 (114)
T 3fgx_A 12 ELKQKY-----GRVYEIRI 25 (114)
T ss_dssp HHHHHH-----SSEEEEEE
T ss_pred HHHHHh-----CceEEEEe
Confidence 466666 99999976
No 14
>1r17_A Fibrinogen-binding protein SDRG; SDRG, mscramm-ligand complex, SDRG-fibrinopeptide complex, cell adhesion; 1.86A {Staphylococcus epidermidis} SCOP: b.2.3.4 b.2.3.4 PDB: 1r19_A 2ral_A
Probab=28.18 E-value=36 Score=27.64 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=24.4
Q ss_pred cCCceEEEEEecccccccccCCEEEEEEeeecCCCC
Q 032941 34 QNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDG 69 (130)
Q Consensus 34 ~~~~m~l~LDINteLyPl~~gdk~~l~LastL~~dg 69 (130)
+.+.+....++.. .+++||.|+|.|...|.+.|
T Consensus 52 e~~~l~~~f~i~~---~vk~GD~Fti~Lp~~l~~~~ 84 (343)
T 1r17_A 52 ENLIYDVTFEVDD---KVKSGDTMTVNIDKNTVPSD 84 (343)
T ss_dssp CCEEEEEEEEECT---TCCTTCEEEEECCTTEESCS
T ss_pred CEEEEEEEEEcCC---CCCCCCEEEEECCCCeeecc
Confidence 4444444555552 79999999999999998765
No 15
>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} SCOP: b.82.1.13
Probab=24.43 E-value=64 Score=26.35 Aligned_cols=33 Identities=30% Similarity=0.555 Sum_probs=22.1
Q ss_pred eeEEEeeecCCCCe-------EEEEEecCccee-------eeeeeeee
Q 032941 94 GKLFKIGDEGSGKS-------LKAYETTTQSIH-------YYFIWACV 127 (130)
Q Consensus 94 GKVYk~e~e~~~~~-------~~vYiS~~~~~~-------~~~~~~~~ 127 (130)
|.||++..+. .+. -.+=+|=++++| |||||+..
T Consensus 217 ~~v~h~~g~p-dEtrh~~V~n~daVlvP~wgyHp~~Gt~~Y~ylwvMA 263 (289)
T 1ywk_A 217 TRIFHMMGKP-DETKHLVMSNEQAAISPSWSIHSGVGTSNYSFIWAMC 263 (289)
T ss_dssp CCEEEEESST-TSCEEEEECTTEEEEECTTSCCCEEESSCCEEEEEEE
T ss_pred CeEEEECCCC-CceEEEEEECCCEEEeCCCcccCCCCCcCeEEEEEEE
Confidence 6788876432 222 135578888888 99999864
No 16
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=22.10 E-value=54 Score=20.53 Aligned_cols=24 Identities=25% Similarity=0.015 Sum_probs=12.7
Q ss_pred eeeeEEeeeECCCCCccceEeeEEEE
Q 032941 7 FEDIFVVEKIDPDGKKFDKVSRIEAH 32 (130)
Q Consensus 7 FeD~F~V~~iD~dGKkFDrVSRI~a~ 32 (130)
|+--=++..+|+.+.. .|..|...
T Consensus 13 F~vGmkLEa~d~~~p~--~~AtV~~v 36 (69)
T 3sd4_A 13 FEVGAQLEARDRLKNW--YPAHIEDI 36 (69)
T ss_dssp CSTTCEEEEECTTSCE--EEEEEEEE
T ss_pred cCCCCEEEEEECCCCc--cccEEEEE
Confidence 3333356677775553 55555543
No 17
>1n67_A Clumping factor; DEV-IGG, IGG, immunoglobulin, IGSF, fibrinongen-binding, cell adhesion; 1.90A {Staphylococcus aureus} SCOP: b.2.3.4 b.2.3.4 PDB: 2vr3_A
Probab=21.64 E-value=40 Score=27.67 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=23.9
Q ss_pred cCCceEEEEEecccccccccCCEEEEEEeeecCCCCC
Q 032941 34 QNCDMYMLLDVNSELYPMRVGDKFTMALAHTLNLDGT 70 (130)
Q Consensus 34 ~~~~m~l~LDINteLyPl~~gdk~~l~LastL~~dg~ 70 (130)
+.+.+....++.. .+++||.|+|.|...|.+.|.
T Consensus 54 e~~~l~~~f~i~~---~vk~GDyFti~Lp~~l~~~~~ 87 (359)
T 1n67_A 54 GYVKLNYGFSVPN---SAVKGDTFKITVPKELNLNGV 87 (359)
T ss_dssp CCEEEEEEEECCT---TCCTTCEEEEBCCTTEEESSS
T ss_pred ceEEEEEEEEcCC---CCCCCCEEEEECCCCEeecCc
Confidence 3444444444442 589999999999999987653
No 18
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=21.17 E-value=1.4e+02 Score=21.88 Aligned_cols=71 Identities=18% Similarity=0.306 Sum_probs=41.1
Q ss_pred ccccccCCEEEEEEeeec-CCCCC---------CCC--CccCCCCCCCcccccceEEeeeEEEeeec--CCCCeEEEEEe
Q 032941 48 LYPMRVGDKFTMALAHTL-NLDGT---------PDT--GYYTPGARKTLADKYEYIMHGKLFKIGDE--GSGKSLKAYET 113 (130)
Q Consensus 48 LyPl~~gdk~~l~LastL-~~dg~---------~~~--~~~~~~~~~sLaD~ydYVMyGKVYk~e~e--~~~~~~~vYiS 113 (130)
--||+.|++|.|.+...- .-.|. |.. ..-++.+-+.|.+.-+|-+- .+-+. ..++.+.++++
T Consensus 42 ~RPl~~~E~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~~~lP~~a~~dL~~~~~~W~~----~l~~~~~~~g~~l~f~v~ 117 (168)
T 2yue_A 42 ARPVRINERICVKFAEISNNWNGGIRFGFTSNDPVTLEGTLPKYACPDLTNRPGFWAK----ALHEQYCEKDNILYYYVN 117 (168)
T ss_dssp SSCCCSSCCEEEEEEECCSSSSSCCEEEEESSCGGGTTTCCCSSSSSHHHHSTTBCCE----ECCSTTCCSSCEEEEEEC
T ss_pred CCCCcCCCEEEEEEEeecCCcceeEEEeeeecCHHHcCCCCCCcCchHHhcCCCEEEE----EeccccccCCCEEEEEEc
Confidence 359999999999986542 22332 110 00111122345666666532 23211 24788899999
Q ss_pred cCcceeeee
Q 032941 114 TTQSIHYYF 122 (130)
Q Consensus 114 ~~~~~~~~~ 122 (130)
..+.+||+-
T Consensus 118 ~~G~l~~~i 126 (168)
T 2yue_A 118 GAGDVIYGI 126 (168)
T ss_dssp TTSEEEEEE
T ss_pred CCCEEEEEE
Confidence 999998863
No 19
>2ejx_A ST0812; arcaea, unknown function, NPPSFA; 1.79A {Sulfolobus tokodaii str}
Probab=20.86 E-value=46 Score=24.55 Aligned_cols=12 Identities=25% Similarity=0.894 Sum_probs=9.7
Q ss_pred ccceEEeeeEEE
Q 032941 87 KYEYIMHGKLFK 98 (130)
Q Consensus 87 ~ydYVMyGKVYk 98 (130)
-++|.|||+||+
T Consensus 57 ~~~~~~~G~vy~ 68 (139)
T 2ejx_A 57 AFSYKVKGRVYK 68 (139)
T ss_dssp TEEEEEEEEEEE
T ss_pred eEEEEEEEEEEE
Confidence 368999999885
Done!