BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032942
MEEITEGVNNMNLAVDANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT
VVTVAEILKNNGLAVEKKIMTSTVDMRDESRGRPVQKAKIEIWLEKTANFDELMAAAAEE
RDVGDGEEQS

High Scoring Gene Products

Symbol, full name Information P value
AT1G29250 protein from Arabidopsis thaliana 1.9e-51
AT2G34160 protein from Arabidopsis thaliana 1.5e-49
DAN1
AT3G04620 		protein from Arabidopsis thaliana 2.7e-36

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032942
        (130 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2029949 - symbol:AT1G29250 species:3702 "Arabi...   534  1.9e-51   1
TAIR|locus:2055516 - symbol:AT2G34160 species:3702 "Arabi...   516  1.5e-49   1
TAIR|locus:2084873 - symbol:DAN1 "D NUCLDUO1-ACTIVATEEIC ...   391  2.7e-36   1


>TAIR|locus:2029949 [details] [associations]
            symbol:AT1G29250 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM;IDA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] InterPro:IPR002775 Pfam:PF01918
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005886
            GO:GO:0005634 GO:GO:0003676 EMBL:AC021043 HOGENOM:HOG000237559
            ProtClustDB:CLSN2688072 InterPro:IPR014560 PIRSF:PIRSF030333
            EMBL:AY052259 EMBL:AY060517 EMBL:AY085788 IPI:IPI00533218
            PIR:A86415 RefSeq:NP_564325.1 UniGene:At.15801
            ProteinModelPortal:Q9LP53 SMR:Q9LP53 STRING:Q9LP53 PRIDE:Q9LP53
            EnsemblPlants:AT1G29250.1 GeneID:839799 KEGG:ath:AT1G29250
            TAIR:At1g29250 InParanoid:Q9LP53 OMA:MEEITEG PhylomeDB:Q9LP53
            Genevestigator:Q9LP53 Uniprot:Q9LP53
        Length = 130

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 107/130 (82%), Positives = 118/130 (90%)

Query:     1 MEEITEGVNNMNLAVDANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT 60
             MEEITEGVNNMNLAVD  KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIAT
Sbjct:     1 MEEITEGVNNMNLAVDTQKKNRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIAT 60

Query:    61 VVTVAEILKNNGLAVEKKIMTSTVDMRDESRGRPVQKAKIEIWLEKTANFDELMAAAAEE 120
             VVTVAEILKNNG AVEKKIMTSTVD++D+SRGRPVQKAKIEI L K+  FDELMAAA EE
Sbjct:    61 VVTVAEILKNNGFAVEKKIMTSTVDIKDDSRGRPVQKAKIEITLAKSEKFDELMAAANEE 120

Query:   121 RDVGDGEEQS 130
             ++  + +EQ+
Sbjct:   121 KEAAEAQEQN 130


>TAIR|locus:2055516 [details] [associations]
            symbol:AT2G34160 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005829 "cytosol" evidence=IDA] [GO:0009062 "fatty
            acid catabolic process" evidence=RCA] InterPro:IPR002775
            Pfam:PF01918 GO:GO:0005829 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0003676 EMBL:AC002341 EMBL:AY084411 EMBL:AK117501
            IPI:IPI00536086 PIR:B84753 RefSeq:NP_565781.1 UniGene:At.37844
            PDB:1VM0 PDB:2Q3V PDBsum:1VM0 PDBsum:2Q3V ProteinModelPortal:O22969
            SMR:O22969 STRING:O22969 PaxDb:O22969 PRIDE:O22969 DNASU:817977
            EnsemblPlants:AT2G34160.1 GeneID:817977 KEGG:ath:AT2G34160
            TAIR:At2g34160 eggNOG:NOG76241 HOGENOM:HOG000237559
            InParanoid:O22969 OMA:MEEITDG PhylomeDB:O22969
            ProtClustDB:CLSN2688072 EvolutionaryTrace:O22969
            Genevestigator:O22969 GermOnline:AT2G34160 InterPro:IPR014560
            PIRSF:PIRSF030333 Uniprot:O22969
        Length = 130

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 103/130 (79%), Positives = 117/130 (90%)

Query:     1 MEEITEGVNNMNLAVDANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT 60
             MEEIT+GVNNMNLA D+ KKNRIQVSNTKKPLFFYVNLAKRYMQQ+N+VELSALGMAIAT
Sbjct:     1 MEEITDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIAT 60

Query:    61 VVTVAEILKNNGLAVEKKIMTSTVDMRDESRGRPVQKAKIEIWLEKTANFDELMAAAAEE 120
             VVTV EILKNNG AVEKKIMTSTVD++D++RGRPVQKAKIEI L K+  FDELMAAA EE
Sbjct:    61 VVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEE 120

Query:   121 RDVGDGEEQS 130
             ++  + + Q+
Sbjct:   121 KEDAEAQVQN 130


>TAIR|locus:2084873 [details] [associations]
            symbol:DAN1 "D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN
            1" species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0048235 "pollen sperm cell
            differentiation" evidence=IEP] [GO:0006302 "double-strand break
            repair" evidence=RCA] [GO:0010332 "response to gamma radiation"
            evidence=RCA] InterPro:IPR002775 Pfam:PF01918 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0003676 EMBL:AC011437 GO:GO:0048235
            HOGENOM:HOG000237559 InterPro:IPR014560 PIRSF:PIRSF030333
            EMBL:BT010655 EMBL:BT010971 IPI:IPI00522733 RefSeq:NP_187113.1
            UniGene:At.40804 ProteinModelPortal:Q9SR12 SMR:Q9SR12 IntAct:Q9SR12
            PaxDb:Q9SR12 PRIDE:Q9SR12 EnsemblPlants:AT3G04620.1 GeneID:819620
            KEGG:ath:AT3G04620 TAIR:At3g04620 eggNOG:NOG319557
            InParanoid:Q9SR12 OMA:MAMEVAT PhylomeDB:Q9SR12
            ProtClustDB:CLSN2914699 Genevestigator:Q9SR12 Uniprot:Q9SR12
        Length = 164

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 77/100 (77%), Positives = 90/100 (90%)

Query:    15 VDANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLA 74
             V+ +KKNRIQVSNTKKPLFFYVNLAKRY+QQHNEVELSALGMAI TVVT++EILKNNGLA
Sbjct:    32 VETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILKNNGLA 91

Query:    75 VEKKIMTSTVDMRDESRGRPVQKAKIEIWLEKTANFDELM 114
              EKK++TSTV M+DE++G+ VQKAKIEI L K+  FD L+
Sbjct:    92 TEKKVLTSTVGMKDETKGKMVQKAKIEIVLGKSDKFDSLV 131


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.126   0.333    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      130       130   0.00091  102 3  10 23  0.45    31
                                                     29  0.42    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  571 (61 KB)
  Total size of DFA:  155 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.92u 0.10s 18.02t   Elapsed:  00:00:00
  Total cpu time:  17.92u 0.10s 18.02t   Elapsed:  00:00:00
  Start:  Fri May 10 08:22:12 2013   End:  Fri May 10 08:22:12 2013

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