BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032942
         (130 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VM0|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At2g34160
 pdb|1VM0|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At2g34160
 pdb|2Q3V|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At2g34160
 pdb|2Q3V|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At2g34160
          Length = 130

 Score =  194 bits (494), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 98/128 (76%), Positives = 109/128 (85%), Gaps = 2/128 (1%)

Query: 2   EEITEGVNNMNLAVDANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATV 61
           EEIT+GVNN NLA D+ KKNRIQVSNTKKPLFFYVNLAKRY QQ+N+VELSALG AIATV
Sbjct: 2   EEITDGVNNXNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYXQQYNDVELSALGXAIATV 61

Query: 62  VTVAEILKNNGLAVEKKIMTSTVDMRDESRGRPVQKAKIEIWLEKTANFDELMAAAAEER 121
           VTV EILKNNG AVEKKI TS VD++D++RGRPVQKAKIEI L K+  FDEL AAA EE+
Sbjct: 62  VTVTEILKNNGFAVEKKIXTSIVDIKDDARGRPVQKAKIEITLVKSEKFDELXAAANEEK 121

Query: 122 DVGDGEEQ 129
           +  D E Q
Sbjct: 122 E--DAETQ 127


>pdb|1NH9|A Chain A, Crystal Structure Of A Dna Binding Protein Mja10b From The
           Hyperthermophile Methanococcus Jannaschii
          Length = 87

 Score = 29.3 bits (64), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 29  KKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNN-GLAVEKKIMTSTVDMR 87
           KKP+  YV      +  ++EV + A G AI   V VAE+++N     ++ K +    D  
Sbjct: 9   KKPVMNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKV 68

Query: 88  DESRGRPVQKAKIEIWLEK 106
               GR V  + IEI L K
Sbjct: 69  KNPDGREVNVSTIEIVLAK 87


>pdb|3TOE|A Chain A, Structure Of Mth10b
 pdb|3TOE|B Chain B, Structure Of Mth10b
          Length = 91

 Score = 27.7 bits (60), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 10/94 (10%)

Query: 18  NKKNRIQVSNTKKPLFFYVNLAKRYMQQH-NEVELSALGMAIATVVTVAEILKNNGLAVE 76
           +++N + + N  KP+  YV      M    +EV L A G+AI+  V VAEI++N  +   
Sbjct: 2   SEENVVYIGN--KPVMNYVLAVVTQMNGGTSEVILKARGIAISRAVDVAEIVRNRFI--- 56

Query: 77  KKIMTSTVDMRDE----SRGRPVQKAKIEIWLEK 106
             I    +D+  E    + G     + IEI L K
Sbjct: 57  PDIQIENIDICTEEIIGNEGTATNVSAIEIQLRK 90


>pdb|1DLM|A Chain A, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter
           Calcoaceticus Native Data
 pdb|1DLM|B Chain B, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter
           Calcoaceticus Native Data
 pdb|1DLQ|A Chain A, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter
           Sp. Adp1 Inhibited By Bound Mercury
 pdb|1DLQ|B Chain B, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter
           Sp. Adp1 Inhibited By Bound Mercury
 pdb|1DLT|A Chain A, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter
           Sp. Adp1 With Bound Catechol
 pdb|1DLT|B Chain B, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter
           Sp. Adp1 With Bound Catechol
 pdb|1DMH|A Chain A, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter
           Sp. Adp1 With Bound 4-Methylcatechol
 pdb|1DMH|B Chain B, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter
           Sp. Adp1 With Bound 4-Methylcatechol
          Length = 311

 Score = 27.3 bits (59), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 89  ESRGRPVQKAKIEIWLEKTANFDELMAAAAEER 121
           ++ G+P+  AK+EIW   T  F        E++
Sbjct: 142 DADGKPLPNAKVEIWHANTKGFYSHFDPTGEQQ 174


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.126    0.333 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,218,424
Number of Sequences: 62578
Number of extensions: 105848
Number of successful extensions: 203
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 7
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)