Query 032942
Match_columns 130
No_of_seqs 103 out of 167
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 07:51:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032942.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032942hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1581 Ssh10b Archaeal DNA-bi 99.9 2.7E-26 6E-31 162.4 9.9 86 18-107 2-91 (91)
2 PRK04015 DNA/RNA-binding prote 99.9 4.8E-25 1E-29 156.9 10.2 88 17-107 1-91 (91)
3 TIGR00285 DNA-binding protein 99.9 6E-25 1.3E-29 155.3 9.8 83 20-106 1-87 (87)
4 PF01918 Alba: Alba; InterPro 99.5 4.3E-14 9.4E-19 93.7 7.8 61 21-82 1-69 (70)
5 KOG2567 Uncharacterized conser 99.3 4.2E-12 9.2E-17 99.3 5.8 91 17-108 15-116 (179)
6 PF12328 Rpp20: Rpp20 subunit 98.5 4.5E-07 9.7E-12 69.1 6.9 67 20-88 3-102 (144)
7 PF04232 SpoVS: Stage V sporul 84.5 3.5 7.5E-05 29.3 5.4 47 21-69 2-50 (86)
8 PF02780 Transketolase_C: Tran 72.5 9.9 0.00021 26.8 4.8 39 43-81 6-45 (124)
9 COG3967 DltE Short-chain dehyd 67.9 8.1 0.00017 32.2 3.9 43 19-68 4-46 (245)
10 COG3958 Transketolase, C-termi 57.1 12 0.00025 32.4 3.1 54 20-73 160-219 (312)
11 COG2359 SpoVS Stage V sporulat 42.8 96 0.0021 22.0 5.4 45 22-68 3-49 (87)
12 COG0504 PyrG CTP synthase (UTP 37.0 37 0.0008 31.3 3.2 32 50-82 10-42 (533)
13 PF12146 Hydrolase_4: Putative 30.5 78 0.0017 21.1 3.3 30 47-76 18-47 (79)
14 cd03113 CTGs CTP synthetase (C 29.8 58 0.0012 27.4 3.0 33 50-83 9-42 (255)
15 COG0022 AcoB Pyruvate/2-oxoglu 27.2 57 0.0012 28.4 2.6 48 36-83 189-238 (324)
16 PF06418 CTP_synth_N: CTP synt 26.5 46 0.001 28.3 1.9 33 50-83 10-43 (276)
17 CHL00144 odpB pyruvate dehydro 25.9 1.1E+02 0.0023 25.9 4.0 42 38-79 192-235 (327)
18 PRK11892 pyruvate dehydrogenas 25.1 86 0.0019 28.0 3.5 45 37-81 330-376 (464)
19 PRK01686 hisG ATP phosphoribos 25.0 73 0.0016 25.8 2.8 76 34-119 121-209 (215)
20 PLN02683 pyruvate dehydrogenas 24.4 94 0.002 26.6 3.5 44 38-81 219-264 (356)
21 TIGR00070 hisG ATP phosphoribo 23.1 77 0.0017 25.0 2.5 51 34-84 115-178 (182)
22 COG0040 HisG ATP phosphoribosy 22.1 85 0.0018 26.8 2.7 52 34-85 122-186 (290)
23 KOG4584 Uncharacterized conser 20.9 1.6E+02 0.0034 25.9 4.1 47 19-65 268-319 (348)
24 PRK05899 transketolase; Review 20.4 1.3E+02 0.0028 27.5 3.7 62 18-79 476-544 (624)
No 1
>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]
Probab=99.94 E-value=2.7e-26 Score=162.35 Aligned_cols=86 Identities=36% Similarity=0.483 Sum_probs=79.4
Q ss_pred CCccEEEEecCCCccchhHHHHH--HHhccCCEEEEeeccchHHhHHHHHHHHHhCCc--eeeeEEEeeeeEeccCCCCc
Q 032942 18 NKKNRIQVSNTKKPLFFYVNLAK--RYMQQHNEVELSALGMAIATVVTVAEILKNNGL--AVEKKIMTSTVDMRDESRGR 93 (130)
Q Consensus 18 ~~~n~I~Vs~~kkP~~~YV~lAk--~~L~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~i~kI~T~t~~i~~e~~g~ 93 (130)
.++|+|+|+. ||.|||| ||. +|++|.++|+|+|+|+|||+|||+||++|+|++ +++++|+++|++++.+ +||
T Consensus 2 ~~envV~vG~--KPvmNYV-lAvlt~fn~g~~eViiKARGraIskAVDvaeivRnrf~p~v~ik~Iki~se~~~~~-~gr 77 (91)
T COG1581 2 AEENVVLVGK--KPVMNYV-LAVLTQFNEGADEVIIKARGRAISKAVDVAEIVRNRFIPDVQIKDIKIGTEELEGE-DGR 77 (91)
T ss_pred CCccEEEEcC--cchHHHH-HHHHHHHHcCCCEEEEEecchhhHhhHhHHHHHHHhcCCCceEEEEEecceeeecC-CCc
Confidence 3569999995 9999999 999 788999999999999999999999999999998 7999999999999875 688
Q ss_pred cceeceEEEEEEeC
Q 032942 94 PVQKAKIEIWLEKT 107 (130)
Q Consensus 94 ~~~vskIeI~L~K~ 107 (130)
.+++|.|||+|.|.
T Consensus 78 ~~~VS~IeI~L~k~ 91 (91)
T COG1581 78 TRNVSTIEIVLAKK 91 (91)
T ss_pred eeeEEEEEEEEecC
Confidence 89999999999873
No 2
>PRK04015 DNA/RNA-binding protein albA; Provisional
Probab=99.92 E-value=4.8e-25 Score=156.89 Aligned_cols=88 Identities=36% Similarity=0.427 Sum_probs=78.3
Q ss_pred cCCccEEEEecCCCccchhHHHHHHHh-ccCCEEEEeeccchHHhHHHHHHHHHhCCc--eeeeEEEeeeeEeccCCCCc
Q 032942 17 ANKKNRIQVSNTKKPLFFYVNLAKRYM-QQHNEVELSALGMAIATVVTVAEILKNNGL--AVEKKIMTSTVDMRDESRGR 93 (130)
Q Consensus 17 ~~~~n~I~Vs~~kkP~~~YV~lAk~~L-~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~i~kI~T~t~~i~~e~~g~ 93 (130)
|+.+|+|+|++ ||.|+||..+..+| ++.++|+|||||+||++||++||+||||++ +.+++|.++|+.+.++ +|+
T Consensus 1 ~~~en~i~Ig~--kpvmnYV~~~~~~l~~g~~eV~iKa~G~aIskAV~vaEilk~r~~~~v~v~~I~i~se~i~~~-~g~ 77 (91)
T PRK04015 1 MAEENVVLVGK--KPVMNYVLAVLTQFNQGAKEVVIKARGRAISKAVDVAEIVRNRFLPDVEIKEIKIGTEEVTSE-DGR 77 (91)
T ss_pred CCCCCEEEEcC--CcHHHHHHHHHHHHhCCCCeEEEEEeccccchhhhHHHHHHHhccCCeEEEEEEeccEEeecC-CCc
Confidence 35689999996 79999995555544 688999999999999999999999999988 8999999999999875 688
Q ss_pred cceeceEEEEEEeC
Q 032942 94 PVQKAKIEIWLEKT 107 (130)
Q Consensus 94 ~~~vskIeI~L~K~ 107 (130)
.+++|+|||+|+|.
T Consensus 78 ~~~VS~IEI~l~k~ 91 (91)
T PRK04015 78 ESNVSTIEIVLEKK 91 (91)
T ss_pred EEEEEEEEEEEecC
Confidence 88999999999974
No 3
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=99.92 E-value=6e-25 Score=155.30 Aligned_cols=83 Identities=40% Similarity=0.521 Sum_probs=75.6
Q ss_pred ccEEEEecCCCccchhHHHHH--HHhccCCEEEEeeccchHHhHHHHHHHHHhCCc--eeeeEEEeeeeEeccCCCCccc
Q 032942 20 KNRIQVSNTKKPLFFYVNLAK--RYMQQHNEVELSALGMAIATVVTVAEILKNNGL--AVEKKIMTSTVDMRDESRGRPV 95 (130)
Q Consensus 20 ~n~I~Vs~~kkP~~~YV~lAk--~~L~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~i~kI~T~t~~i~~e~~g~~~ 95 (130)
+|+|+|+. ||.|+|| +|. +|++|.++|.|||||+||++||++||+|++|++ +.+++|+++|+.+.++ +|+.+
T Consensus 1 e~~i~vG~--KPvmnYV-lavlt~fn~g~~eV~iKarG~aIskAVdvaeiik~r~~~~v~v~~I~i~te~~~~~-~G~~~ 76 (87)
T TIGR00285 1 ENVVYIGN--KPVMNYV-LAVLTQLNSGADEVIIKARGRAISRAVDVAEIVRNRFIPDIKIKKIKIGTEEIKSE-QGREV 76 (87)
T ss_pred CCEEEEcC--CcHHHHH-HHHHHHHhCCCCeEEEEEecchhhhHHHHHHHHHHhccCCceEEEEEeccEEeecC-CCcee
Confidence 48999996 8999999 877 677889999999999999999999999999987 5799999999998865 69999
Q ss_pred eeceEEEEEEe
Q 032942 96 QKAKIEIWLEK 106 (130)
Q Consensus 96 ~vskIeI~L~K 106 (130)
++|+|||+|.|
T Consensus 77 ~VStIEI~l~~ 87 (87)
T TIGR00285 77 NVSTIEIVLAK 87 (87)
T ss_pred eEEEEEEEEeC
Confidence 99999999986
No 4
>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function. The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....
Probab=99.53 E-value=4.3e-14 Score=93.71 Aligned_cols=61 Identities=39% Similarity=0.543 Sum_probs=52.4
Q ss_pred cEEEEecCCCccchhHHHHHHHh-----ccCCEEEEeeccchHHhHHHHHHHHHhC---CceeeeEEEee
Q 032942 21 NRIQVSNTKKPLFFYVNLAKRYM-----QQHNEVELSALGMAIATVVTVAEILKNN---GLAVEKKIMTS 82 (130)
Q Consensus 21 n~I~Vs~~kkP~~~YV~lAk~~L-----~~~~eV~LsAlG~AIs~AV~vAEiLkrr---~~a~i~kI~T~ 82 (130)
|.|+|+. ++|.++||..+..+| .++++|.|+|+|+||++||.+||+||++ ++.++.++..+
T Consensus 1 n~I~V~~-~~~~~~~v~~~~~~L~~~~~~~~~~V~l~g~G~aI~kaI~vaei~K~~~~~~~~qv~~~t~t 69 (70)
T PF01918_consen 1 NEIYVSS-NSPIKSYVKRALKLLEGRENGKNDEVVLKGRGKAISKAISVAEILKRRFGEGLYQVNKITST 69 (70)
T ss_dssp SEEEE-S-TS-HHHHHHHHHHHHT-TTHTTCSEEEEEEECCHHHHHHHHHHHHHHHTSTTTEEEEEEEEE
T ss_pred CEEEECC-CCCHHHHHHHHHHHHhhhhcCCCCEEEEEEEcHHHHHHHHHHHHHHHhhcCCCEEEEEEecc
Confidence 6899998 569999999999888 7799999999999999999999999999 56777777543
No 5
>KOG2567 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=4.2e-12 Score=99.27 Aligned_cols=91 Identities=26% Similarity=0.353 Sum_probs=74.3
Q ss_pred cCCccEEEEecCCCccchhHHHHHHHhcc--CCEEEEeeccchHHhHHHHHHHHHhC--CceeeeEEEeeee-EeccC-C
Q 032942 17 ANKKNRIQVSNTKKPLFFYVNLAKRYMQQ--HNEVELSALGMAIATVVTVAEILKNN--GLAVEKKIMTSTV-DMRDE-S 90 (130)
Q Consensus 17 ~~~~n~I~Vs~~kkP~~~YV~lAk~~L~~--~~eV~LsAlG~AIs~AV~vAEiLkrr--~~a~i~kI~T~t~-~i~~e-~ 90 (130)
+++.|+++|..+.|-+ ||+.||..+|++ +..|++||+|+||+++|.+||||||| ||+++++|..-+. +.+.- .
T Consensus 15 pp~a~emrV~~g~kir-N~i~~A~~~L~~~~~r~VVfsg~Grai~KTVscaEilKrRipgLhQ~t~l~~~sv~d~W~p~~ 93 (179)
T KOG2567|consen 15 PPDANEMRVKSGSKIR-NLIEFATELLQKGSHRCVVFSGSGRAIVKTVSCAEILKRRIPGLHQVTRLRYTSVEDVWEPTE 93 (179)
T ss_pred CCCcceEEEccCchHH-HHHHHHHHHhhCCCeeEEEEecCCcceeeeeeHHHHHhhhCcchhhhceeeeeehhhcccccc
Confidence 6789999999987777 999999988865 79999999999999999999999999 8889988876544 33321 1
Q ss_pred CC-----ccceeceEEEEEEeCc
Q 032942 91 RG-----RPVQKAKIEIWLEKTA 108 (130)
Q Consensus 91 ~g-----~~~~vskIeI~L~K~~ 108 (130)
.| -.++||.|-|.|.+.+
T Consensus 94 eGl~pl~vtRhVp~l~IlLS~de 116 (179)
T KOG2567|consen 94 EGLEPLEVTRHVPMLHILLSLDE 116 (179)
T ss_pred cCccceEEeeccceEEEEEeccc
Confidence 23 2457999999998853
No 6
>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B.
Probab=98.48 E-value=4.5e-07 Score=69.10 Aligned_cols=67 Identities=24% Similarity=0.370 Sum_probs=49.5
Q ss_pred ccEEEEecCCCccchhHHHHHHHhcc---C------------------------------CEEEEeeccchHHhHHHHHH
Q 032942 20 KNRIQVSNTKKPLFFYVNLAKRYMQQ---H------------------------------NEVELSALGMAIATVVTVAE 66 (130)
Q Consensus 20 ~n~I~Vs~~kkP~~~YV~lAk~~L~~---~------------------------------~eV~LsAlG~AIs~AV~vAE 66 (130)
++.|+||+ +-|+|.+|.=+.+||.. + .+|.|+|||+||.+|+.+|.
T Consensus 3 ~~~iyVss-~TPfmSavKRv~K~L~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~gtGkAIeKal~la~ 81 (144)
T PF12328_consen 3 PKVIYVSS-KTPFMSAVKRVRKLLDKAEKRATSSVNLAKKKKSQKKKIAQLAEGSEALKSEEVTVKGTGKAIEKALSLAL 81 (144)
T ss_dssp TTEEE--S-S--HHHHHHHHHHHHHHHHHH----------------T-------------SEEEEEEEGGGHHHHHHHHH
T ss_pred CcEEEEec-CCchHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccCccEEEEEeccHHHHHHHHHHH
Confidence 67899998 56998888766677742 1 69999999999999999999
Q ss_pred HHHhCCceeeeEEEeeeeEecc
Q 032942 67 ILKNNGLAVEKKIMTSTVDMRD 88 (130)
Q Consensus 67 iLkrr~~a~i~kI~T~t~~i~~ 88 (130)
-++++. .-...|.|+|+.+-|
T Consensus 82 ~Fq~~~-~~~V~V~TgTV~vvD 102 (144)
T PF12328_consen 82 WFQRKK-GYKVEVRTGTVEVVD 102 (144)
T ss_dssp HHHHTT----EEEEEEEEEEEE
T ss_pred HHhhcC-CeEEEEEeceEEEEE
Confidence 999885 456678888886543
No 7
>PF04232 SpoVS: Stage V sporulation protein S (SpoVS); InterPro: IPR007347 In Bacillus subtilis this protein interferes with sporulation at an early stage and this inhibitory effect is overcome by SpoIIB and SpoVG. SpoVS seems to play a positive role in allowing progression beyond stage V of sporulation. Null mutations in the spoVS gene block sporulation at stage V, impairing the development of heat resistance and coat assembly [].; PDB: 2EH1_B 2EK0_B.
Probab=84.49 E-value=3.5 Score=29.25 Aligned_cols=47 Identities=26% Similarity=0.341 Sum_probs=31.5
Q ss_pred cEEEEecCCCccchhHHHHH-HHhccCCEEEEeeccc-hHHhHHHHHHHHH
Q 032942 21 NRIQVSNTKKPLFFYVNLAK-RYMQQHNEVELSALGM-AIATVVTVAEILK 69 (130)
Q Consensus 21 n~I~Vs~~kkP~~~YV~lAk-~~L~~~~eV~LsAlG~-AIs~AV~vAEiLk 69 (130)
+++.||++.+|.. .. =|. ..+.+++.|.|.|.|- |++.||...-|-+
T Consensus 2 e~LKVSs~S~p~~-vA-gAIa~~lre~~~v~lqaiGa~AvnqAvKAIAiAR 50 (86)
T PF04232_consen 2 EVLKVSSKSNPNA-VA-GAIAGVLREGGKVELQAIGAGAVNQAVKAIAIAR 50 (86)
T ss_dssp -EEEE-TT--HHH-HH-HHHHHHHHHTSEEEEEE-SHHHHHHHHHHHHHHH
T ss_pred ceEEEcCCCCHHH-HH-HHHHHHHhcCCcEEEEEECHHHHHHHHHHHHHHH
Confidence 4789999778873 22 222 5667788999999998 8999988877764
No 8
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=72.50 E-value=9.9 Score=26.84 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=32.0
Q ss_pred hccCCEEEEeeccchHHhHHHHHHHHHhCCc-eeeeEEEe
Q 032942 43 MQQHNEVELSALGMAIATVVTVAEILKNNGL-AVEKKIMT 81 (130)
Q Consensus 43 L~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~-a~i~kI~T 81 (130)
+++...|.|=+.|.....|+++++.|+.+|+ +.+-++++
T Consensus 6 ~~~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~ 45 (124)
T PF02780_consen 6 LREGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRT 45 (124)
T ss_dssp EESSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EeCCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEE
Confidence 3556889999999999999999999999986 45555544
No 9
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=67.87 E-value=8.1 Score=32.21 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=32.2
Q ss_pred CccEEEEecCCCccchhHHHHHHHhccCCEEEEeeccchHHhHHHHHHHH
Q 032942 19 KKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEIL 68 (130)
Q Consensus 19 ~~n~I~Vs~~kkP~~~YV~lAk~~L~~~~eV~LsAlG~AIs~AV~vAEiL 68 (130)
.-|+|+|+.+..-. - .-||++|++-.++|+|+||-.+ .++|+.
T Consensus 4 tgnTiLITGG~sGI-G-l~lak~f~elgN~VIi~gR~e~-----~L~e~~ 46 (245)
T COG3967 4 TGNTILITGGASGI-G-LALAKRFLELGNTVIICGRNEE-----RLAEAK 46 (245)
T ss_pred cCcEEEEeCCcchh-h-HHHHHHHHHhCCEEEEecCcHH-----HHHHHH
Confidence 35899999866433 3 4499999999999999998653 455554
No 10
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=57.10 E-value=12 Score=32.35 Aligned_cols=54 Identities=22% Similarity=0.418 Sum_probs=39.5
Q ss_pred ccEEEEecCCCccchhHH-----HHH-HHhccCCEEEEeeccchHHhHHHHHHHHHhCCc
Q 032942 20 KNRIQVSNTKKPLFFYVN-----LAK-RYMQQHNEVELSALGMAIATVVTVAEILKNNGL 73 (130)
Q Consensus 20 ~n~I~Vs~~kkP~~~YV~-----lAk-~~L~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~ 73 (130)
+--++.+..+-|.-.|-. +.+ ..|+....+.|=|.|--...|+..|++|+.+|+
T Consensus 160 P~Y~Rl~R~~~p~~~~~~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GI 219 (312)
T COG3958 160 PVYMRLGRGKVPVVVDEGGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGI 219 (312)
T ss_pred CEEEEecCCCCCceecCCCceEeccceeEeecCCceEEEecCcchHHHHHHHHHHHhcCC
Confidence 344455544444433332 444 567778999999999999999999999999987
No 11
>COG2359 SpoVS Stage V sporulation protein SpoVS [Function unknown]
Probab=42.76 E-value=96 Score=22.01 Aligned_cols=45 Identities=24% Similarity=0.335 Sum_probs=35.4
Q ss_pred EEEEecCCCccchhHHHHH-HHhccCCEEEEeeccc-hHHhHHHHHHHH
Q 032942 22 RIQVSNTKKPLFFYVNLAK-RYMQQHNEVELSALGM-AIATVVTVAEIL 68 (130)
Q Consensus 22 ~I~Vs~~kkP~~~YV~lAk-~~L~~~~eV~LsAlG~-AIs~AV~vAEiL 68 (130)
.+.||+...|. -|-=|. -.|...+.++|.|.|. |++-||..--|-
T Consensus 3 vLKVsa~S~Pn--sVAGAlAgvlr~~g~aEiQAiGagAvNQaVKAiAia 49 (87)
T COG2359 3 VLKVSAKSNPN--SVAGALAGVLRERGKAEIQAIGAGAVNQAVKAIAIA 49 (87)
T ss_pred eEEeccCCCcc--hHHHHHHHHHHhcCceeeeeechHHHHHHHHHHHHH
Confidence 46788877776 353444 5778899999999998 999999887776
No 12
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=36.98 E-value=37 Score=31.31 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=26.3
Q ss_pred EEeeccchHHhHHHHHHHHHhCCc-eeeeEEEee
Q 032942 50 ELSALGMAIATVVTVAEILKNNGL-AVEKKIMTS 82 (130)
Q Consensus 50 ~LsAlG~AIs~AV~vAEiLkrr~~-a~i~kI~T~ 82 (130)
++|+||+-|..| .++-+||+||+ +++.||+-.
T Consensus 10 VvSslGKGi~aa-Slg~lLk~rG~~Vt~~KlDPY 42 (533)
T COG0504 10 VVSSLGKGITAA-SLGRLLKARGLKVTIQKLDPY 42 (533)
T ss_pred eecccccHHHHH-HHHHHHHHCCceEEEEecccc
Confidence 479999999754 78999999998 788887653
No 13
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=30.47 E-value=78 Score=21.08 Aligned_cols=30 Identities=27% Similarity=0.270 Sum_probs=26.8
Q ss_pred CEEEEeeccchHHhHHHHHHHHHhCCceee
Q 032942 47 NEVELSALGMAIATVVTVAEILKNNGLAVE 76 (130)
Q Consensus 47 ~eV~LsAlG~AIs~AV~vAEiLkrr~~a~i 76 (130)
-.++++|+|.-+.+--.+|+-|..+|++.+
T Consensus 18 ~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~ 47 (79)
T PF12146_consen 18 VVVIVHGFGEHSGRYAHLAEFLAEQGYAVF 47 (79)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHhCCCEEE
Confidence 468899999999999999999999998765
No 14
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=29.79 E-value=58 Score=27.41 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=26.5
Q ss_pred EEeeccchHHhHHHHHHHHHhCCc-eeeeEEEeee
Q 032942 50 ELSALGMAIATVVTVAEILKNNGL-AVEKKIMTST 83 (130)
Q Consensus 50 ~LsAlG~AIs~AV~vAEiLkrr~~-a~i~kI~T~t 83 (130)
++|+||+-|..| .++-+||+||+ ++..||+--.
T Consensus 9 v~s~lgkgi~~a-s~g~ll~~~g~~v~~~K~DpYl 42 (255)
T cd03113 9 VVSSLGKGITAA-SLGRLLKARGLKVTAQKLDPYL 42 (255)
T ss_pred cccCcchHHHHH-HHHHHHHHCCCeEEEEeecccc
Confidence 579999998755 68899999998 7778876543
No 15
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=27.19 E-value=57 Score=28.36 Aligned_cols=48 Identities=23% Similarity=0.391 Sum_probs=39.3
Q ss_pred HHHHH-HHhccCCEEEEeeccchHHhHHHHHHHHHhCCc-eeeeEEEeee
Q 032942 36 VNLAK-RYMQQHNEVELSALGMAIATVVTVAEILKNNGL-AVEKKIMTST 83 (130)
Q Consensus 36 V~lAk-~~L~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~-a~i~kI~T~t 83 (130)
+-|.| .+.+..+.|.|=+-|.....|++.||.|..+|+ +.+.+.+|-.
T Consensus 189 iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRTl~ 238 (324)
T COG0022 189 IPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRTLS 238 (324)
T ss_pred ccccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEeccccC
Confidence 55666 556778999999999999999999999999987 6666666543
No 16
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=26.51 E-value=46 Score=28.30 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=24.7
Q ss_pred EEeeccchHHhHHHHHHHHHhCCc-eeeeEEEeee
Q 032942 50 ELSALGMAIATVVTVAEILKNNGL-AVEKKIMTST 83 (130)
Q Consensus 50 ~LsAlG~AIs~AV~vAEiLkrr~~-a~i~kI~T~t 83 (130)
++|++|+-|..| .++-+||.+|+ ++..||+-..
T Consensus 10 V~SglGKGi~aa-Sig~lLk~~G~~V~~~K~DPYl 43 (276)
T PF06418_consen 10 VVSGLGKGITAA-SIGRLLKSRGYKVTMIKIDPYL 43 (276)
T ss_dssp SSSSSSHHHHHH-HHHHHHHCTT--EEEEEEE-SS
T ss_pred ccccccHHHHHH-HHHHHHHhCCeeeeeeeecccc
Confidence 368999988654 78999999998 7888887643
No 17
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=25.90 E-value=1.1e+02 Score=25.91 Aligned_cols=42 Identities=14% Similarity=0.244 Sum_probs=32.6
Q ss_pred HHH-HHhccCCEEEEeeccchHHhHHHHHHHHHhCCc-eeeeEE
Q 032942 38 LAK-RYMQQHNEVELSALGMAIATVVTVAEILKNNGL-AVEKKI 79 (130)
Q Consensus 38 lAk-~~L~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~-a~i~kI 79 (130)
+.+ ..++..+.|.|=|.|.....|..+|+.|+.+|+ +.+-+.
T Consensus 192 ~Gk~~v~~~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 235 (327)
T CHL00144 192 LEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDL 235 (327)
T ss_pred CCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 444 445567899999999999999999999998885 344333
No 18
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=25.10 E-value=86 Score=28.04 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=36.0
Q ss_pred HHHH-HHhccCCEEEEeeccchHHhHHHHHHHHHhCCc-eeeeEEEe
Q 032942 37 NLAK-RYMQQHNEVELSALGMAIATVVTVAEILKNNGL-AVEKKIMT 81 (130)
Q Consensus 37 ~lAk-~~L~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~-a~i~kI~T 81 (130)
.+.+ +.++....|.|=+.|.....|..+|+.|+.+|+ +.+-+.++
T Consensus 330 ~~Gka~v~r~G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~t 376 (464)
T PRK11892 330 PIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRT 376 (464)
T ss_pred cCceEEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 4555 566677899999999999999999999998886 55555544
No 19
>PRK01686 hisG ATP phosphoribosyltransferase catalytic subunit; Reviewed
Probab=25.01 E-value=73 Score=25.77 Aligned_cols=76 Identities=29% Similarity=0.432 Sum_probs=48.1
Q ss_pred hhHHHHHHHhcc----------CCEEEE---eeccchHHhHHHHHHHHHhCCceeeeEEEeeeeEeccCCCCccceeceE
Q 032942 34 FYVNLAKRYMQQ----------HNEVEL---SALGMAIATVVTVAEILKNNGLAVEKKIMTSTVDMRDESRGRPVQKAKI 100 (130)
Q Consensus 34 ~YV~lAk~~L~~----------~~eV~L---sAlG~AIs~AV~vAEiLkrr~~a~i~kI~T~t~~i~~e~~g~~~~vskI 100 (130)
-|.+++++||+. ++.|++ -|+=.||-.-|.+-.-||.+||-.+..|-.++.-+-- ++. ..
T Consensus 121 kYp~it~~yf~~~gv~~~iv~l~GsvE~aP~~GlAD~IvDivsTG~TLr~NgL~~ie~Il~s~A~LI~-n~~------s~ 193 (215)
T PRK01686 121 KYPNIARRYFAEKGEQVEIIKLYGSVELAPLVGLADAIVDIVETGNTLRANGLVEVEEIMDISARLIV-NRA------SL 193 (215)
T ss_pred CCHHHHHHHHHHcCCeEEEEECcCceeeccccCCccEEEEeecChHHHHHCcCEEeeEEEeeEEEEEE-ecc------cc
Confidence 599999999954 223333 1344467777888889999999888888777765431 111 11
Q ss_pred EEEEEeCccHHHHHHHHHh
Q 032942 101 EIWLEKTANFDELMAAAAE 119 (130)
Q Consensus 101 eI~L~K~~~Fd~~~~~~~~ 119 (130)
. .|++..+.++..-+.
T Consensus 194 ~---~k~~~i~~l~~~l~~ 209 (215)
T PRK01686 194 K---LKREEIRPLIEKLRE 209 (215)
T ss_pred h---hhHHHHHHHHHHHHH
Confidence 1 356666666665543
No 20
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=24.38 E-value=94 Score=26.62 Aligned_cols=44 Identities=20% Similarity=0.365 Sum_probs=33.3
Q ss_pred HHH-HHhccCCEEEEeeccchHHhHHHHHHHHHhCCc-eeeeEEEe
Q 032942 38 LAK-RYMQQHNEVELSALGMAIATVVTVAEILKNNGL-AVEKKIMT 81 (130)
Q Consensus 38 lAk-~~L~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~-a~i~kI~T 81 (130)
+.+ ..+...+.|.|=|.|.-...|.++|+.|+.+|+ +.+-+..+
T Consensus 219 ~Gk~~v~r~G~dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId~~~ 264 (356)
T PLN02683 219 IGKAKIEREGKDVTIVAFSKMVGYALKAAEILAKEGISAEVINLRS 264 (356)
T ss_pred CCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 344 445556789999999999999999999998885 44444433
No 21
>TIGR00070 hisG ATP phosphoribosyltransferase. Members of this family from B. subtilis, Aquifex aeolicus, and Synechocystis PCC6803 (and related taxa) lack the C-terminal third of the sequence. The sole homolog from Archaeoglobus fulgidus lacks the N-terminal 50 residues (as reported) and is otherwise atypical of the rest of the family. This model excludes the C-terminal extension.
Probab=23.11 E-value=77 Score=25.00 Aligned_cols=51 Identities=37% Similarity=0.621 Sum_probs=33.1
Q ss_pred hhHHHHHHHhcc----------CCEEEEe---eccchHHhHHHHHHHHHhCCceeeeEEEeeee
Q 032942 34 FYVNLAKRYMQQ----------HNEVELS---ALGMAIATVVTVAEILKNNGLAVEKKIMTSTV 84 (130)
Q Consensus 34 ~YV~lAk~~L~~----------~~eV~Ls---AlG~AIs~AV~vAEiLkrr~~a~i~kI~T~t~ 84 (130)
-|-+++++||.. ++.|++. |+=.||-.-|..-.-|+.+||..+..|-.++.
T Consensus 115 kyp~i~~~~f~~~Gi~v~ii~l~GsvE~aP~~GlaD~IvDiv~TG~TL~~NgL~~ie~i~~s~a 178 (182)
T TIGR00070 115 KYPNLARRYFEKKGIDVEIIKLNGSVELAPLLGLADAIVDIVSTGTTLRENGLRIIEVILESSA 178 (182)
T ss_pred CCHHHHHHHHHHcCCeEEEEECcceeecccCCCceeEEEEEeCCHHHHHHCCCEEeeEEEeeEE
Confidence 488899999954 2333331 22234555566778899999988777766654
No 22
>COG0040 HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=22.09 E-value=85 Score=26.77 Aligned_cols=52 Identities=37% Similarity=0.505 Sum_probs=40.7
Q ss_pred hhHHHHHHHhccC----------CEEEE---eeccchHHhHHHHHHHHHhCCceeeeEEEeeeeE
Q 032942 34 FYVNLAKRYMQQH----------NEVEL---SALGMAIATVVTVAEILKNNGLAVEKKIMTSTVD 85 (130)
Q Consensus 34 ~YV~lAk~~L~~~----------~eV~L---sAlG~AIs~AV~vAEiLkrr~~a~i~kI~T~t~~ 85 (130)
-|.+++++|++++ +.|++ -|+..||-.-|.+-.-||-+||..+..|-.++.-
T Consensus 122 kYp~l~~~yf~~~g~~~~Ii~l~GsvE~aP~~GlADaIvDivsTG~TLkaNgL~~id~i~~ssa~ 186 (290)
T COG0040 122 KYPNLARKYFAEKGIDVEIIKLSGSVELAPALGLADAIVDIVSTGTTLKANGLKEIEVIYDSSAR 186 (290)
T ss_pred ccHHHHHHHHHHcCceEEEEEccCcEeeccccCccceEEEeecCCHhHHHCCCEEEEEEEeeEEE
Confidence 5999999999642 22332 3567899999999999999999888888777764
No 23
>KOG4584 consensus Uncharacterized conserved protein [General function prediction only]
Probab=20.89 E-value=1.6e+02 Score=25.87 Aligned_cols=47 Identities=15% Similarity=0.299 Sum_probs=29.2
Q ss_pred CccEEEEecCC--CccchhHHHHHH--Hh-ccCCEEEEeeccchHHhHHHHH
Q 032942 19 KKNRIQVSNTK--KPLFFYVNLAKR--YM-QQHNEVELSALGMAIATVVTVA 65 (130)
Q Consensus 19 ~~n~I~Vs~~k--kP~~~YV~lAk~--~L-~~~~eV~LsAlG~AIs~AV~vA 65 (130)
+.+.++|-.++ .|.+-.-++.+. .+ .+.+=|+|.|||||+.+-..++
T Consensus 268 ~~~~ll~~~~G~~~pciDlrrvsqeLa~l~~daDLVViEGMGRalhTN~~aq 319 (348)
T KOG4584|consen 268 DTGQLLVVQNGQDSPCIDLRRVSQELAYLSSDADLVVIEGMGRALHTNLNAQ 319 (348)
T ss_pred hhcceEEeecCCCCceeeHHhhhHHHHHHhcCCCEEEEeccchhhhhhhhhh
Confidence 34444443333 676554444442 23 4689999999999998765443
No 24
>PRK05899 transketolase; Reviewed
Probab=20.39 E-value=1.3e+02 Score=27.46 Aligned_cols=62 Identities=15% Similarity=0.215 Sum_probs=39.7
Q ss_pred CCccEEEEecCCCccc------hhHHHHHHHhccCCEEEEeeccchHHhHHHHHHHHHhCCc-eeeeEE
Q 032942 18 NKKNRIQVSNTKKPLF------FYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGL-AVEKKI 79 (130)
Q Consensus 18 ~~~n~I~Vs~~kkP~~------~YV~lAk~~L~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~-a~i~kI 79 (130)
..+..|+.+..+-|.. ..+.+.+..+.....|.|=|.|.-...|.++|+.|+.+|+ +.|-.+
T Consensus 476 ~~P~~ir~~r~~~~~~~~~~~~~~~~~G~~~l~~G~dvtiia~G~~v~~al~Aa~~L~~~gi~~~VId~ 544 (624)
T PRK05899 476 DGPSALVLTRQNLPVLERTAQEEGVAKGGYVLRDDPDVILIATGSEVHLALEAADELEAEGIKVRVVSM 544 (624)
T ss_pred CCCEEEEEeCCCCCCcCCccccccccCCcEEEecCCCEEEEEeCHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 4556666654443321 1122222334445889999999999999999999998885 344333
Done!