Query 032942
Match_columns 130
No_of_seqs 103 out of 167
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 12:38:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032942.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032942hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vm0_A Unknown protein; struct 100.0 1.8E-45 6.2E-50 274.7 11.4 129 2-130 2-130 (130)
2 2bky_A DNA/RNA-binding protein 99.9 2.5E-25 8.4E-30 158.4 10.7 88 17-107 6-97 (97)
3 1nfj_A ALBA, conserved hypothe 99.9 1.5E-24 5E-29 152.1 10.2 85 19-106 2-89 (89)
4 1nh9_A MJA10B, DNA-binding pro 99.9 2.2E-24 7.6E-29 150.6 9.6 84 20-106 2-87 (87)
5 3toe_A MTH10B, DNA/RNA-binding 99.9 4.2E-24 1.4E-28 151.0 9.8 88 17-107 1-91 (91)
6 2h9u_A DNA/RNA-binding protein 99.9 1.3E-23 4.3E-28 150.8 10.4 88 20-109 6-100 (102)
7 2bky_X DNA/RNA-binding protein 99.9 8E-22 2.7E-26 138.5 8.4 83 17-107 3-88 (89)
8 3iab_B Ribonucleases P/MRP pro 98.4 1.4E-06 4.6E-11 65.6 7.8 68 19-88 29-101 (140)
9 3iab_A Ribonucleases P/MRP pro 75.8 12 0.00041 28.3 7.4 66 45-111 75-149 (158)
10 2ek0_A Stage V sporulation pro 74.1 5.8 0.0002 27.5 4.9 46 21-68 2-49 (90)
11 2vo1_A CTP synthase 1; pyrimid 32.8 21 0.00073 29.4 2.2 30 51-81 33-63 (295)
12 3ju3_A Probable 2-oxoacid ferr 29.7 87 0.003 21.2 4.7 37 46-82 13-50 (118)
13 1umd_B E1-beta, 2-OXO acid deh 26.3 77 0.0026 24.9 4.4 39 43-81 199-238 (324)
14 2c5m_A CTP synthase; cytidine 22.4 38 0.0013 27.9 1.8 32 50-82 32-64 (294)
15 3nva_A CTP synthase; rossman f 22.4 39 0.0013 29.8 2.1 33 50-83 12-45 (535)
16 1w85_B Pyruvate dehydrogenase 21.4 97 0.0033 24.4 4.1 39 43-81 198-237 (324)
17 3l84_A Transketolase; TKT, str 20.1 99 0.0034 27.2 4.2 36 46-81 525-561 (632)
No 1
>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A
Probab=100.00 E-value=1.8e-45 Score=274.66 Aligned_cols=129 Identities=78% Similarity=1.052 Sum_probs=91.8
Q ss_pred hhhhhhhcccccccccCCccEEEEecCCCccchhHHHHHHHhccCCEEEEeeccchHHhHHHHHHHHHhCCceeeeEEEe
Q 032942 2 EEITEGVNNMNLAVDANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIMT 81 (130)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~n~I~Vs~~kkP~~~YV~lAk~~L~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~a~i~kI~T 81 (130)
|+|++||+||++++..+++|+|+||++|||+||||++|++||+++++|+|||||+||++||++||||||||++++++|.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~N~I~Vs~~kkP~~nYV~~a~~~l~g~~eV~LkA~G~AIskAV~VAEiLkrr~l~~ikkI~t 81 (130)
T 1vm0_A 2 EEITDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMT 81 (130)
T ss_dssp -----------------CTTEEECCCTTSCHHHHHHHHHHHHHHHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEE
T ss_pred hhHhhhhhcccccCCCCCCCEEEEecCCCCceeHHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHHHhcCcceEEEEEe
Confidence 78999999999998999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred eeeEeccCCCCccceeceEEEEEEeCccHHHHHHHHHhccccCCCCcCC
Q 032942 82 STVDMRDESRGRPVQKAKIEIWLEKTANFDELMAAAAEERDVGDGEEQS 130 (130)
Q Consensus 82 ~t~~i~~e~~g~~~~vskIeI~L~K~~~Fd~~~~~~~~~~~~~~~~~~~ 130 (130)
+|+++.++.+||++++|+|||+|.|+|+||++|+++++++++.+++||+
T Consensus 82 ~t~~i~~~~~~r~v~~skIEI~L~k~~~fd~~~~~~~~~~~~~~~~~~~ 130 (130)
T 1vm0_A 82 SIVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKEDAETQVQN 130 (130)
T ss_dssp EEEEEC------CEEEEEEEEEEEECTTHHHHHHHC-------------
T ss_pred eeEEeccCCCCcccccceEEEEEEecCcHHHHHHHhhhhhcccccccCC
Confidence 9999988767899999999999999999999999999999999998874
No 2
>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A
Probab=99.92 E-value=2.5e-25 Score=158.37 Aligned_cols=88 Identities=28% Similarity=0.370 Sum_probs=77.1
Q ss_pred cCCccEEEEecCCCccchhHHHHHHHh-ccCCEEEEeeccchHHhHHHHHHHHHhCCce---eeeEEEeeeeEeccCCCC
Q 032942 17 ANKKNRIQVSNTKKPLFFYVNLAKRYM-QQHNEVELSALGMAIATVVTVAEILKNNGLA---VEKKIMTSTVDMRDESRG 92 (130)
Q Consensus 17 ~~~~n~I~Vs~~kkP~~~YV~lAk~~L-~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~a---~i~kI~T~t~~i~~e~~g 92 (130)
++++|+|+|++ ||.|+||.+|..+| +|+++|+|||+|+||++||++|||||+|++. .+++|+++|+.+.++ +|
T Consensus 6 ~~~~n~I~V~~--k~v~~YV~~a~~ll~~g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~~e-~G 82 (97)
T 2bky_A 6 PTPSNVVLIGK--KPVMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTSQ-DG 82 (97)
T ss_dssp ---CCEEECCS--SCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEET-TS
T ss_pred CCCCCEEEEcC--cCHHHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEecC-CC
Confidence 78899999996 89999998888666 5689999999999999999999999999874 489999999999875 68
Q ss_pred ccceeceEEEEEEeC
Q 032942 93 RPVQKAKIEIWLEKT 107 (130)
Q Consensus 93 ~~~~vskIeI~L~K~ 107 (130)
+.+++|.|+|.|.|.
T Consensus 83 ~~r~vS~IeI~L~k~ 97 (97)
T 2bky_A 83 RQSRVSTIEIAIRKK 97 (97)
T ss_dssp CEEEEEEEEEEEEEC
T ss_pred cEEEeeEEEEEEEcC
Confidence 989999999999874
No 3
>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*
Probab=99.91 E-value=1.5e-24 Score=152.12 Aligned_cols=85 Identities=34% Similarity=0.446 Sum_probs=76.3
Q ss_pred CccEEEEecCCCccchhHHHHHHHh-ccCCEEEEeeccchHHhHHHHHHHHHhCCc--eeeeEEEeeeeEeccCCCCccc
Q 032942 19 KKNRIQVSNTKKPLFFYVNLAKRYM-QQHNEVELSALGMAIATVVTVAEILKNNGL--AVEKKIMTSTVDMRDESRGRPV 95 (130)
Q Consensus 19 ~~n~I~Vs~~kkP~~~YV~lAk~~L-~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~i~kI~T~t~~i~~e~~g~~~ 95 (130)
.+|+|+|++ ||.|+||.+|..+| +|+++|+|||||+||++||++||+||+|++ ..+++|+++|+.+.++ +|+.+
T Consensus 2 ~~n~I~V~~--k~v~~yV~~~~~~l~~g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i~i~s~~i~~e-~g~~r 78 (89)
T 1nfj_A 2 AEHVVYVGN--KPVMNYVLATLTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELESE-QGRRS 78 (89)
T ss_dssp -CEEEECCS--SCHHHHHHHHHHHHHTTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCCB-TTBCC
T ss_pred CCCEEEEcC--CCHHHHHHHHHHHHhCCCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEEEEeEEEEEcC-CCcEE
Confidence 479999996 89999998888666 568999999999999999999999999986 5779999999999876 68989
Q ss_pred eeceEEEEEEe
Q 032942 96 QKAKIEIWLEK 106 (130)
Q Consensus 96 ~vskIeI~L~K 106 (130)
++|.|+|.|.|
T Consensus 79 ~vs~IeI~L~k 89 (89)
T 1nfj_A 79 NVSTIEIVLAK 89 (89)
T ss_dssp EEEEEEEEEEC
T ss_pred EeeEEEEEEEC
Confidence 99999999986
No 4
>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1
Probab=99.91 E-value=2.2e-24 Score=150.62 Aligned_cols=84 Identities=33% Similarity=0.439 Sum_probs=69.8
Q ss_pred ccEEEEecCCCccchhHHHHHHHhccCCEEEEeeccchHHhHHHHHHHHHhCCc--eeeeEEEeeeeEeccCCCCcccee
Q 032942 20 KNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGL--AVEKKIMTSTVDMRDESRGRPVQK 97 (130)
Q Consensus 20 ~n~I~Vs~~kkP~~~YV~lAk~~L~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~i~kI~T~t~~i~~e~~g~~~~v 97 (130)
+|+|+|++ ||.|+||.+|..+|+++++|.|||+|+||++||++||+||+|++ ..+++|+++|+.+.++ +|+.+++
T Consensus 2 ~n~I~V~~--k~v~~YV~~~~~~l~~g~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~~i~i~s~~i~~e-~g~~r~v 78 (87)
T 1nh9_A 2 DNVVLIGK--KPVMNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKNP-DGREVNV 78 (87)
T ss_dssp CSEEEECS--SCHHHHHHHHHHHHHHCSEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC--------CCCE
T ss_pred CCEEEEeC--cchHHHHHHHHHHhcCCCEEEEEEechHHHHHHHHHHHHHHhccCCeEEEEEEEeEEEEEcC-CCcEEEe
Confidence 69999997 59999998888666444999999999999999999999999986 5779999999998875 6888999
Q ss_pred ceEEEEEEe
Q 032942 98 AKIEIWLEK 106 (130)
Q Consensus 98 skIeI~L~K 106 (130)
|.|+|.|.|
T Consensus 79 S~IeI~L~k 87 (87)
T 1nh9_A 79 STIEIVLAK 87 (87)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEEEEC
Confidence 999999986
No 5
>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.91 E-value=4.2e-24 Score=150.99 Aligned_cols=88 Identities=32% Similarity=0.395 Sum_probs=75.4
Q ss_pred cCCccEEEEecCCCccchhHHHHHHHh-ccCCEEEEeeccchHHhHHHHHHHHHhCCc--eeeeEEEeeeeEeccCCCCc
Q 032942 17 ANKKNRIQVSNTKKPLFFYVNLAKRYM-QQHNEVELSALGMAIATVVTVAEILKNNGL--AVEKKIMTSTVDMRDESRGR 93 (130)
Q Consensus 17 ~~~~n~I~Vs~~kkP~~~YV~lAk~~L-~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~i~kI~T~t~~i~~e~~g~ 93 (130)
|+++|+|+|++ ||.|+||..+..+| +|.++|+|+|+|+||++||++||+||+|++ ..+++|+++|+.+.++ +|+
T Consensus 1 m~~~~vv~vg~--Kpv~~YV~~~i~~~n~g~~eV~ikA~G~aIskAVdvaei~k~R~~~~v~v~~I~I~se~~~~e-~G~ 77 (91)
T 3toe_A 1 MSEENVVYIGN--KPVMNYVLAVVTQMNGGTSEVILKARGIAISRAVDVAEIVRNRFIPDIQIENIDICTEEIIGN-EGT 77 (91)
T ss_dssp ----CCEECCS--SCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEEEECT-TSS
T ss_pred CCccCEEEECC--CcHHHHHHHHHHHHhCCCCEEEEEEehhHHHHHHHHHHHHHHhccCCcEEEEEEeeeEEeecC-CCc
Confidence 35689999996 89999996666555 679999999999999999999999999988 8999999999998765 688
Q ss_pred cceeceEEEEEEeC
Q 032942 94 PVQKAKIEIWLEKT 107 (130)
Q Consensus 94 ~~~vskIeI~L~K~ 107 (130)
.+++|.|||+|.|.
T Consensus 78 ~r~VS~IeI~L~k~ 91 (91)
T 3toe_A 78 ATNVSAIEIQLRKD 91 (91)
T ss_dssp EEEEEEEEEEEEC-
T ss_pred eeEeeEEEEEEECC
Confidence 99999999999873
No 6
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=99.90 E-value=1.3e-23 Score=150.78 Aligned_cols=88 Identities=26% Similarity=0.356 Sum_probs=78.3
Q ss_pred ccEEEEecCCCccchhHHHHH-HHh-ccCCEEEEeeccchHHhHHHHHHHHHhCCc--eeeeEEEeeeeEeccCC-CCc-
Q 032942 20 KNRIQVSNTKKPLFFYVNLAK-RYM-QQHNEVELSALGMAIATVVTVAEILKNNGL--AVEKKIMTSTVDMRDES-RGR- 93 (130)
Q Consensus 20 ~n~I~Vs~~kkP~~~YV~lAk-~~L-~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~i~kI~T~t~~i~~e~-~g~- 93 (130)
+|.|+|++ ||.|+||.+|. .+| +|+++|.|||||+||++||++|||||||++ ..+++|+++|+.+.++. +|+
T Consensus 6 ~n~I~V~~--k~~~nyV~~a~~~ll~~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~d~~e~g~~ 83 (102)
T 2h9u_A 6 APEVRIGR--KPVMNYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIEVQTPEGQT 83 (102)
T ss_dssp CCEEECCS--SCHHHHHHHHHHHHTSTTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEEEECTTSCE
T ss_pred CCEEEEcC--CCHHHHHHHHHHHHHhCCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEeccccCCcc
Confidence 59999996 89999999998 777 558999999999999999999999999986 56799999999988641 476
Q ss_pred -cceeceEEEEEEeCcc
Q 032942 94 -PVQKAKIEIWLEKTAN 109 (130)
Q Consensus 94 -~~~vskIeI~L~K~~~ 109 (130)
.+++|.|+|.|.|.|.
T Consensus 84 ~~r~vS~IeI~Lsk~~~ 100 (102)
T 2h9u_A 84 RTRRVSSIEICLEKAGE 100 (102)
T ss_dssp EEEEEEEEEEEEEECSS
T ss_pred ceeEeeeEEEEEEccCC
Confidence 7899999999999885
No 7
>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A
Probab=99.86 E-value=8e-22 Score=138.50 Aligned_cols=83 Identities=18% Similarity=0.051 Sum_probs=71.3
Q ss_pred cCCccEEEEecCCCccchhHHHHHH-HhccCCEEEEeeccchHHhHHHHHHHHHhCCc--eeeeEEEeeeeEeccCCCCc
Q 032942 17 ANKKNRIQVSNTKKPLFFYVNLAKR-YMQQHNEVELSALGMAIATVVTVAEILKNNGL--AVEKKIMTSTVDMRDESRGR 93 (130)
Q Consensus 17 ~~~~n~I~Vs~~kkP~~~YV~lAk~-~L~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~i~kI~T~t~~i~~e~~g~ 93 (130)
..++|.++|+. ||.|+||..+.. |++|.++|.|||||+||++||++||+||+|++ +.+++|+++|+. |+
T Consensus 3 ~~~~~iv~vg~--kpv~nYV~~~~~~ln~g~~eV~ikA~G~aIskAVdvaeilk~R~~~~~~i~~i~i~se~------~~ 74 (89)
T 2bky_X 3 EKLNEIVVRKT--KNVEDHVLDVIVLFNQGIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQTGSEV------RD 74 (89)
T ss_dssp -CCEEEECCTT--SCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEEE------ET
T ss_pred CCCCCEEEECC--CCHHHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccCceEEEEEEecccc------Cc
Confidence 36788888886 799999966664 44678999999999999999999999999976 799999999885 55
Q ss_pred cceeceEEEEEEeC
Q 032942 94 PVQKAKIEIWLEKT 107 (130)
Q Consensus 94 ~~~vskIeI~L~K~ 107 (130)
.+++|.|+|.|.|.
T Consensus 75 ~r~VS~IeI~L~k~ 88 (89)
T 2bky_X 75 RRRISYILLRLKRV 88 (89)
T ss_dssp TEEEEEEEEEEEEC
T ss_pred ceEeeeEEEEEEec
Confidence 66899999999874
No 8
>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=98.35 E-value=1.4e-06 Score=65.57 Aligned_cols=68 Identities=13% Similarity=0.256 Sum_probs=53.2
Q ss_pred CccEEEEecCCCccchhHHHHHHHhc-----cCCEEEEeeccchHHhHHHHHHHHHhCCceeeeEEEeeeeEecc
Q 032942 19 KKNRIQVSNTKKPLFFYVNLAKRYMQ-----QHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIMTSTVDMRD 88 (130)
Q Consensus 19 ~~n~I~Vs~~kkP~~~YV~lAk~~L~-----~~~eV~LsAlG~AIs~AV~vAEiLkrr~~a~i~kI~T~t~~i~~ 88 (130)
-+|.|+|++ +-|.+.=+.=..+||. +..+|.|+|||+||.+|+.+|--+++++- -.-.|.|+|+.+-|
T Consensus 29 ~~~~iYV~s-kTpf~S~vkRi~KlL~~~~k~~~~eV~v~GmGkAIeKal~lAl~fq~~~~-~~V~V~T~TV~vvD 101 (140)
T 3iab_B 29 IHTTIFVKS-TTPYVSALKRINKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHFQDQKN-KKIEVYTKTIEVLD 101 (140)
T ss_dssp HTTEEECCS-SCCHHHHHHHHHHHHHHHHHHTCSEEEEEEEGGGHHHHHHHHHHHHHTTC-CCEEEEEEEEEEEE
T ss_pred cCceEEEec-CCchHHHHHHHHHHHHHhhcCCCcEEEEEechHHHHHHHHHHHHHhhcCC-EEEEEEeceEEEEE
Confidence 488999998 4476654433337886 47999999999999999999999999863 44568898876543
No 9
>3iab_A Ribonucleases P/MRP protein subunit POP6; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=75.82 E-value=12 Score=28.33 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=43.6
Q ss_pred cCCEEEEeeccchHHhHHHHHHHHHhC------CceeeeEEEeeeeEeccC---CCCccceeceEEEEEEeCccHH
Q 032942 45 QHNEVELSALGMAIATVVTVAEILKNN------GLAVEKKIMTSTVDMRDE---SRGRPVQKAKIEIWLEKTANFD 111 (130)
Q Consensus 45 ~~~eV~LsAlG~AIs~AV~vAEiLkrr------~~a~i~kI~T~t~~i~~e---~~g~~~~vskIeI~L~K~~~Fd 111 (130)
+.+-|-|-|.|..|.+++.+.||+|++ ++.+.-+..-... +..+ ---+..++|=+.+++.++.++|
T Consensus 75 ~~~~V~l~syg~hIQKmLSIvEI~Kk~~~~~~~~l~Q~NkL~~f~~-v~~grNELle~r~~vPILi~~i~~~~~~~ 149 (158)
T 3iab_A 75 LQQVVCIFSYGPHIQKMLSILEIFKKGYIKNNKKIYQWNKLTSFDI-KREGRNELQEERLKVPILVTMVSDSEIID 149 (158)
T ss_dssp CEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTTCCCEEEEEEEEEEE-C-------CCCCEEEEEEEEEEESSSSCC
T ss_pred cCceEEEEecChHHHHHHHHHHHHHHHhhcCCccHHHHhhhhhhcc-CCccccHHHHhhcCCCEEEEEEecccccc
Confidence 458999999999999999999999984 2444444333322 1111 1123457888888888876654
No 10
>2ek0_A Stage V sporulation protein S (spovs) related Pro; structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} PDB: 2eh1_A
Probab=74.10 E-value=5.8 Score=27.46 Aligned_cols=46 Identities=26% Similarity=0.353 Sum_probs=35.5
Q ss_pred cEEEEecCCCccchhHHHHH-HHhccCCEEEEeeccc-hHHhHHHHHHHH
Q 032942 21 NRIQVSNTKKPLFFYVNLAK-RYMQQHNEVELSALGM-AIATVVTVAEIL 68 (130)
Q Consensus 21 n~I~Vs~~kkP~~~YV~lAk-~~L~~~~eV~LsAlG~-AIs~AV~vAEiL 68 (130)
..+.||++.+|. ... =|. ..+++.+.|.|.|.|. |++.||...-|-
T Consensus 2 e~LKVSs~S~P~-~VA-GAIA~~lRe~~~veiqAIGa~AvNqAVKAIAIA 49 (90)
T 2ek0_A 2 ETLRVSSKSRPN-SVA-GAIAAMLRTKGEVEVQAIGPQAVNQAVKAIAIA 49 (90)
T ss_dssp CEEEECTTCCHH-HHH-HHHHHHHHHHSEEEEEECSHHHHHHHHHHHHHH
T ss_pred ceEEEcCCCChH-HHH-HHHHHHHhcCCceEEEEECHHHHHHHHHHHHHH
Confidence 468899988888 333 233 5677788999999998 999998877665
No 11
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=32.76 E-value=21 Score=29.38 Aligned_cols=30 Identities=37% Similarity=0.506 Sum_probs=24.8
Q ss_pred EeeccchHHhHHHHHHHHHhCCc-eeeeEEEe
Q 032942 51 LSALGMAIATVVTVAEILKNNGL-AVEKKIMT 81 (130)
Q Consensus 51 LsAlG~AIs~AV~vAEiLkrr~~-a~i~kI~T 81 (130)
+|+||+-|..| .++-+||.||+ +++.|++-
T Consensus 33 vS~lGKGi~aa-Slg~lLk~~G~~Vt~~K~DP 63 (295)
T 2vo1_A 33 ISGIGKGIIAS-SVGTILKSCGLHVTSIKIDP 63 (295)
T ss_dssp SSSSSHHHHHH-HHHHHHHHTTCCEEEEEEEC
T ss_pred ccccccHHHHH-HHHHHHHHCCCcceeeeccc
Confidence 46799998765 58999999998 78888765
No 12
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=29.71 E-value=87 Score=21.17 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=29.9
Q ss_pred CCEEEEeeccchHHhHHHHHHHHHhCCc-eeeeEEEee
Q 032942 46 HNEVELSALGMAIATVVTVAEILKNNGL-AVEKKIMTS 82 (130)
Q Consensus 46 ~~eV~LsAlG~AIs~AV~vAEiLkrr~~-a~i~kI~T~ 82 (130)
..++.|=+.|.....|..+++.|+.+|+ +.+-++++-
T Consensus 13 g~dv~iv~~Gs~~~~a~eA~~~L~~~Gi~v~vi~~r~~ 50 (118)
T 3ju3_A 13 EADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMF 50 (118)
T ss_dssp SCSEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred CCCEEEEEECccHHHHHHHHHHHHHCCCceEEEEECeE
Confidence 4678889999999999999999999986 555555543
No 13
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=26.31 E-value=77 Score=24.89 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=31.0
Q ss_pred hccCCEEEEeeccchHHhHHHHHHHHHhCCc-eeeeEEEe
Q 032942 43 MQQHNEVELSALGMAIATVVTVAEILKNNGL-AVEKKIMT 81 (130)
Q Consensus 43 L~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~-a~i~kI~T 81 (130)
+.+...|.|=|.|.....|..+|+.|+.+|+ +.+-++.+
T Consensus 199 ~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~ 238 (324)
T 1umd_B 199 RREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRT 238 (324)
T ss_dssp EECCSSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECCE
T ss_pred EecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEece
Confidence 3445789999999999999999999999986 45544444
No 14
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=22.44 E-value=38 Score=27.90 Aligned_cols=32 Identities=34% Similarity=0.435 Sum_probs=25.6
Q ss_pred EEeeccchHHhHHHHHHHHHhCCc-eeeeEEEee
Q 032942 50 ELSALGMAIATVVTVAEILKNNGL-AVEKKIMTS 82 (130)
Q Consensus 50 ~LsAlG~AIs~AV~vAEiLkrr~~-a~i~kI~T~ 82 (130)
++|++|+-|..| .++-+||.+|+ ++..||+-.
T Consensus 32 VvSglGKGi~aa-SlG~LLk~rG~~Vt~~KiDPY 64 (294)
T 2c5m_A 32 VISGIGKGIIAS-SVGTILKSCGLHVTSIKIDPY 64 (294)
T ss_dssp SSTTSCHHHHHH-HHHHHHHTTTCCEECCEEECB
T ss_pred cccccchHHHHH-HHHHHHHHCCCeeEEEecCCc
Confidence 358999988654 78999999999 777787753
No 15
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=22.37 E-value=39 Score=29.77 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=26.5
Q ss_pred EEeeccchHHhHHHHHHHHHhCCc-eeeeEEEeee
Q 032942 50 ELSALGMAIATVVTVAEILKNNGL-AVEKKIMTST 83 (130)
Q Consensus 50 ~LsAlG~AIs~AV~vAEiLkrr~~-a~i~kI~T~t 83 (130)
++|+||+-|..| .+.-+||.+|+ ++..||+-..
T Consensus 12 v~s~lgkgi~~a-s~g~ll~~~g~~v~~~k~dpyl 45 (535)
T 3nva_A 12 VLSSVGKGTLVA-SIGMLLKRRGYNVTAVKIDPYI 45 (535)
T ss_dssp CSTTTTHHHHHH-HHHHHHHHTTCCEEEEEEECSS
T ss_pred cccCcchHHHHH-HHHHHHHHCCceEEEEecCcce
Confidence 468999988644 78999999999 7888887643
No 16
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=21.40 E-value=97 Score=24.35 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=30.8
Q ss_pred hccCCEEEEeeccchHHhHHHHHHHHHhCCc-eeeeEEEe
Q 032942 43 MQQHNEVELSALGMAIATVVTVAEILKNNGL-AVEKKIMT 81 (130)
Q Consensus 43 L~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~-a~i~kI~T 81 (130)
+.+...|.|=|.|.....|..+++.|+.+|+ +.+-++.+
T Consensus 198 ~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~ 237 (324)
T 1w85_B 198 KREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRT 237 (324)
T ss_dssp EECCSSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSE
T ss_pred EecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEeee
Confidence 3445788999999999999999999999986 45544444
No 17
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=20.08 E-value=99 Score=27.23 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=30.0
Q ss_pred CCEEEEeeccchHHhHHHHHHHHHhCCc-eeeeEEEe
Q 032942 46 HNEVELSALGMAIATVVTVAEILKNNGL-AVEKKIMT 81 (130)
Q Consensus 46 ~~eV~LsAlG~AIs~AV~vAEiLkrr~~-a~i~kI~T 81 (130)
...|.|=|.|.-...|+.+|+.|+.+|+ +.|-+..+
T Consensus 525 g~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~Vi~~~~ 561 (632)
T 3l84_A 525 EAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPC 561 (632)
T ss_dssp TCSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECSB
T ss_pred CCCEEEEEechHHHHHHHHHHHHHhcCCCeEEEecCc
Confidence 5789999999999999999999999987 45544443
Done!