Query 032950
Match_columns 130
No_of_seqs 142 out of 1561
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 12:47:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032950.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032950hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gj0_A GTP-binding nuclear pro 99.9 5.7E-21 1.9E-25 133.4 11.3 127 1-127 94-220 (221)
2 4dkx_A RAS-related protein RAB 99.8 6.9E-20 2.4E-24 128.8 9.4 85 1-85 92-179 (216)
3 2g3y_A GTP-binding protein GEM 99.7 9.8E-17 3.3E-21 112.2 8.9 83 1-83 118-204 (211)
4 3cbq_A GTP-binding protein REM 99.7 5.2E-16 1.8E-20 106.7 11.3 84 1-84 103-190 (195)
5 3q85_A GTP-binding protein REM 99.7 4E-16 1.4E-20 103.8 10.4 83 1-83 82-168 (169)
6 3dz8_A RAS-related protein RAB 99.6 8.8E-16 3E-20 104.6 9.3 84 1-84 102-188 (191)
7 3ihw_A Centg3; RAS, centaurin, 99.6 8.9E-16 3.1E-20 104.5 9.3 83 1-83 92-181 (184)
8 3q3j_B RHO-related GTP-binding 99.6 3.6E-16 1.2E-20 108.9 7.3 85 1-85 105-206 (214)
9 3c5c_A RAS-like protein 12; GD 99.6 5.2E-16 1.8E-20 105.8 7.9 82 1-82 98-186 (187)
10 2cjw_A GTP-binding protein GEM 99.6 1.5E-15 5.3E-20 104.0 10.3 82 1-82 87-172 (192)
11 2nzj_A GTP-binding protein REM 99.6 8.3E-16 2.8E-20 102.6 8.5 82 1-82 84-169 (175)
12 3q72_A GTP-binding protein RAD 99.6 1.1E-15 3.9E-20 101.3 9.0 82 1-82 79-164 (166)
13 2hup_A RAS-related protein RAB 99.6 1.4E-15 4.9E-20 104.7 9.7 84 1-84 108-195 (201)
14 1g16_A RAS-related protein SEC 99.6 2.7E-15 9.2E-20 99.6 10.4 84 1-84 82-167 (170)
15 2iwr_A Centaurin gamma 1; ANK 99.6 2E-15 6.7E-20 101.4 9.3 82 1-82 79-169 (178)
16 3kkq_A RAS-related protein M-R 99.6 3.2E-15 1.1E-19 100.8 10.3 82 1-82 96-182 (183)
17 2fu5_C RAS-related protein RAB 99.6 2.5E-15 8.7E-20 101.3 9.7 83 1-83 87-172 (183)
18 2atx_A Small GTP binding prote 99.6 3.3E-15 1.1E-19 101.8 10.3 82 1-82 96-193 (194)
19 3reg_A RHO-like small GTPase; 99.6 2.3E-15 7.7E-20 102.7 9.5 84 1-84 101-190 (194)
20 3tw8_B RAS-related protein RAB 99.6 2.7E-15 9.1E-20 100.5 9.6 83 1-83 88-172 (181)
21 3t5g_A GTP-binding protein RHE 99.6 2.1E-15 7.2E-20 101.5 9.1 86 1-86 84-173 (181)
22 3tkl_A RAS-related protein RAB 99.6 4E-15 1.4E-19 101.2 10.4 86 1-86 95-183 (196)
23 1z0f_A RAB14, member RAS oncog 99.6 5.2E-15 1.8E-19 98.9 10.1 82 1-82 94-178 (179)
24 1u8z_A RAS-related protein RAL 99.6 4E-15 1.4E-19 98.3 9.4 82 1-82 82-167 (168)
25 1wms_A RAB-9, RAB9, RAS-relate 99.6 8.5E-15 2.9E-19 97.9 10.6 83 1-83 86-175 (177)
26 4djt_A GTP-binding nuclear pro 99.6 8.7E-15 3E-19 101.5 10.9 90 1-90 91-183 (218)
27 2hxs_A RAB-26, RAS-related pro 99.6 5.8E-15 2E-19 98.9 9.5 84 1-84 86-175 (178)
28 2a5j_A RAS-related protein RAB 99.6 7.7E-15 2.6E-19 99.9 10.2 83 1-83 100-185 (191)
29 1x3s_A RAS-related protein RAB 99.6 7.1E-15 2.4E-19 99.8 10.0 84 1-84 94-180 (195)
30 1z2a_A RAS-related protein RAB 99.6 5E-15 1.7E-19 98.1 8.8 82 1-82 84-167 (168)
31 2g6b_A RAS-related protein RAB 99.6 1.2E-14 4E-19 97.5 10.7 83 1-83 90-175 (180)
32 2gf9_A RAS-related protein RAB 99.6 4.7E-15 1.6E-19 100.8 8.8 83 1-83 101-186 (189)
33 2ce2_X GTPase HRAS; signaling 99.6 1.4E-14 4.8E-19 95.3 10.8 82 1-82 81-165 (166)
34 2ew1_A RAS-related protein RAB 99.6 5.8E-15 2E-19 102.1 9.3 83 1-83 105-190 (201)
35 1z08_A RAS-related protein RAB 99.6 5.1E-15 1.7E-19 98.3 8.6 82 1-82 85-169 (170)
36 2bov_A RAla, RAS-related prote 99.6 1.1E-14 3.6E-19 99.8 10.4 83 1-83 92-178 (206)
37 1c1y_A RAS-related protein RAP 99.6 1.2E-14 4.1E-19 96.1 10.3 81 1-81 81-166 (167)
38 1m7b_A RND3/RHOE small GTP-bin 99.6 2.2E-15 7.4E-20 102.1 6.8 82 1-82 85-183 (184)
39 4dsu_A GTPase KRAS, isoform 2B 99.6 1.3E-14 4.5E-19 97.9 10.6 83 1-83 82-167 (189)
40 1r2q_A RAS-related protein RAB 99.6 6.1E-15 2.1E-19 97.7 8.7 81 1-81 85-168 (170)
41 3t1o_A Gliding protein MGLA; G 99.6 1.8E-15 6.2E-20 102.7 6.0 84 1-84 104-194 (198)
42 2efe_B Small GTP-binding prote 99.6 9.7E-15 3.3E-19 98.0 9.4 83 1-83 91-176 (181)
43 1zbd_A Rabphilin-3A; G protein 99.6 1.1E-14 3.9E-19 99.8 9.8 84 1-84 87-173 (203)
44 2q3h_A RAS homolog gene family 99.6 8E-15 2.7E-19 100.4 8.8 83 1-83 98-196 (201)
45 2a9k_A RAS-related protein RAL 99.6 1.1E-14 3.6E-19 98.0 9.3 82 1-82 96-181 (187)
46 1z0j_A RAB-22, RAS-related pro 99.6 1.2E-14 4.1E-19 96.4 9.3 81 1-81 85-168 (170)
47 2p5s_A RAS and EF-hand domain 99.6 1.3E-14 4.5E-19 99.4 9.8 82 1-82 107-197 (199)
48 3oes_A GTPase rhebl1; small GT 99.6 4.8E-15 1.6E-19 101.8 7.4 86 1-86 102-191 (201)
49 2atv_A RERG, RAS-like estrogen 99.6 9.8E-15 3.4E-19 99.8 9.0 83 1-83 105-192 (196)
50 3cpj_B GTP-binding protein YPT 99.6 1.2E-14 4E-19 101.5 9.5 86 1-86 92-180 (223)
51 2bme_A RAB4A, RAS-related prot 99.6 7E-15 2.4E-19 99.2 8.1 84 1-84 89-175 (186)
52 2j1l_A RHO-related GTP-binding 99.6 1.1E-14 3.7E-19 101.2 9.2 84 1-84 112-211 (214)
53 2o52_A RAS-related protein RAB 99.6 1.6E-14 5.5E-19 99.3 9.7 83 1-83 104-189 (200)
54 2il1_A RAB12; G-protein, GDP, 99.6 1.3E-14 4.6E-19 99.0 9.2 83 1-83 105-191 (192)
55 2bcg_Y Protein YP2, GTP-bindin 99.6 2.2E-14 7.4E-19 98.7 10.3 85 1-85 87-174 (206)
56 1mh1_A RAC1; GTP-binding, GTPa 99.6 9.4E-15 3.2E-19 98.3 8.2 84 1-84 83-182 (186)
57 2fn4_A P23, RAS-related protei 99.6 1.2E-14 4.3E-19 97.2 8.8 84 1-84 87-174 (181)
58 3bc1_A RAS-related protein RAB 99.6 2.5E-14 8.6E-19 96.6 10.1 83 1-83 100-186 (195)
59 3bwd_D RAC-like GTP-binding pr 99.6 5.7E-15 1.9E-19 99.2 6.8 82 1-82 86-181 (182)
60 1gwn_A RHO-related GTP-binding 99.6 5.1E-15 1.7E-19 102.5 6.7 82 1-82 106-204 (205)
61 3clv_A RAB5 protein, putative; 99.6 3.2E-14 1.1E-18 96.6 10.6 81 1-82 123-204 (208)
62 2fg5_A RAB-22B, RAS-related pr 99.6 9.2E-15 3.1E-19 99.7 7.7 83 1-83 102-187 (192)
63 3con_A GTPase NRAS; structural 99.6 2.3E-14 7.9E-19 97.2 9.7 83 1-83 99-184 (190)
64 1ek0_A Protein (GTP-binding pr 99.6 1.2E-14 4E-19 96.3 7.9 81 1-81 82-168 (170)
65 3cph_A RAS-related protein SEC 99.6 2.8E-14 9.5E-19 98.3 9.8 83 1-83 99-183 (213)
66 2yc2_C IFT27, small RAB-relate 99.6 1.6E-14 5.4E-19 98.9 8.5 82 1-82 103-192 (208)
67 1z06_A RAS-related protein RAB 99.6 2E-14 6.9E-19 97.6 8.9 81 1-81 100-187 (189)
68 2gco_A H9, RHO-related GTP-bin 99.6 3.1E-14 1.1E-18 97.8 9.8 82 1-82 103-200 (201)
69 2gf0_A GTP-binding protein DI- 99.5 1.7E-14 5.8E-19 98.3 8.3 83 1-83 86-172 (199)
70 1kao_A RAP2A; GTP-binding prot 99.5 1.5E-14 5.1E-19 95.4 7.8 82 1-82 81-166 (167)
71 1ky3_A GTP-binding protein YPT 99.5 4.3E-14 1.5E-18 94.6 10.0 82 1-82 88-178 (182)
72 1vg8_A RAS-related protein RAB 99.5 2.9E-14 9.8E-19 97.8 9.2 83 1-83 87-176 (207)
73 2j0v_A RAC-like GTP-binding pr 99.5 1.3E-14 4.4E-19 100.2 7.5 85 1-85 87-183 (212)
74 2oil_A CATX-8, RAS-related pro 99.5 3.5E-14 1.2E-18 96.6 9.4 83 1-83 104-189 (193)
75 2f7s_A C25KG, RAS-related prot 99.5 1.8E-14 6E-19 99.8 7.7 83 1-83 114-200 (217)
76 2fv8_A H6, RHO-related GTP-bin 99.5 5E-14 1.7E-18 97.2 9.8 83 1-83 103-201 (207)
77 2erx_A GTP-binding protein DI- 99.5 2.5E-14 8.6E-19 94.9 7.3 82 1-82 81-167 (172)
78 2y8e_A RAB-protein 6, GH09086P 99.5 3.6E-14 1.2E-18 94.8 8.1 82 1-82 93-177 (179)
79 3l0i_B RAS-related protein RAB 99.5 3.9E-15 1.3E-19 102.1 2.2 83 1-83 112-197 (199)
80 4gzl_A RAS-related C3 botulinu 99.5 3.3E-14 1.1E-18 98.0 6.6 80 1-80 108-203 (204)
81 3c5h_A Glucocorticoid receptor 99.5 4.9E-14 1.7E-18 100.8 7.0 80 1-81 169-254 (255)
82 3llu_A RAS-related GTP-binding 99.5 8E-14 2.7E-18 95.4 6.6 79 1-80 102-195 (196)
83 2wkq_A NPH1-1, RAS-related C3 99.5 1.3E-13 4.3E-18 100.8 8.0 82 1-82 233-330 (332)
84 4bas_A ADP-ribosylation factor 99.5 7.6E-14 2.6E-18 95.0 6.2 85 1-85 93-192 (199)
85 1f6b_A SAR1; gtpases, N-termin 99.4 1.2E-13 4.2E-18 94.8 6.2 79 1-80 99-197 (198)
86 2zej_A Dardarin, leucine-rich 99.4 1.2E-13 4.2E-18 93.6 5.9 84 1-84 86-180 (184)
87 1r8s_A ADP-ribosylation factor 99.4 4.5E-14 1.5E-18 93.3 3.6 82 1-82 74-162 (164)
88 1ksh_A ARF-like protein 2; sma 99.4 3E-13 1E-17 91.3 7.7 83 1-83 92-181 (186)
89 2h57_A ADP-ribosylation factor 99.4 3.8E-13 1.3E-17 91.3 8.2 81 1-81 97-186 (190)
90 1zj6_A ADP-ribosylation factor 99.4 2.4E-13 8.1E-18 92.1 7.0 85 1-85 90-181 (187)
91 1m2o_B GTP-binding protein SAR 99.4 1.4E-13 4.7E-18 93.9 5.7 78 1-79 97-189 (190)
92 1upt_A ARL1, ADP-ribosylation 99.4 1.3E-13 4.3E-18 91.6 4.5 83 1-83 81-170 (171)
93 1fzq_A ADP-ribosylation factor 99.4 2.7E-13 9.4E-18 91.7 6.2 82 1-82 90-178 (181)
94 2b6h_A ADP-ribosylation factor 99.4 1E-13 3.6E-18 94.7 4.0 82 1-82 103-191 (192)
95 3th5_A RAS-related C3 botulinu 99.1 1.8E-14 6.1E-19 99.0 0.0 80 1-80 108-203 (204)
96 2h17_A ADP-ribosylation factor 99.4 3.3E-13 1.1E-17 91.0 5.1 79 1-79 95-180 (181)
97 1zd9_A ADP-ribosylation factor 99.4 6.7E-13 2.3E-17 90.1 6.3 82 1-82 97-185 (188)
98 1moz_A ARL1, ADP-ribosylation 99.4 8E-13 2.7E-17 88.8 5.9 82 1-82 92-180 (183)
99 2x77_A ADP-ribosylation factor 99.4 3.9E-13 1.3E-17 91.1 4.0 83 1-83 96-185 (189)
100 2qu8_A Putative nucleolar GTP- 99.3 2.4E-12 8.2E-17 90.0 7.0 82 1-82 115-205 (228)
101 2wji_A Ferrous iron transport 99.3 1E-12 3.4E-17 87.6 4.7 75 1-80 88-163 (165)
102 1u0l_A Probable GTPase ENGC; p 99.3 1.5E-12 5.2E-17 95.3 6.1 75 1-78 91-169 (301)
103 2cxx_A Probable GTP-binding pr 99.3 3.2E-12 1.1E-16 86.2 6.5 84 1-85 86-187 (190)
104 2f9l_A RAB11B, member RAS onco 99.3 2.7E-11 9.3E-16 82.9 10.2 83 1-83 84-169 (199)
105 3r7w_B Gtpase2, GTP-binding pr 99.3 1.1E-12 3.7E-17 97.2 2.8 81 1-82 79-174 (331)
106 3o47_A ADP-ribosylation factor 99.3 1.4E-12 5E-17 96.5 2.7 83 1-83 239-328 (329)
107 1oix_A RAS-related protein RAB 99.2 5E-11 1.7E-15 81.2 9.4 80 1-80 108-190 (191)
108 2wjg_A FEOB, ferrous iron tran 99.2 7.4E-12 2.5E-16 84.4 4.2 77 7-85 95-172 (188)
109 2yv5_A YJEQ protein; hydrolase 99.2 2.8E-11 9.7E-16 88.6 6.0 76 1-78 86-165 (302)
110 3lvq_E ARF-GAP with SH3 domain 99.2 4.8E-11 1.6E-15 92.3 7.4 85 1-85 396-487 (497)
111 3r7w_A Gtpase1, GTP-binding pr 99.2 3.6E-11 1.2E-15 88.1 6.1 80 1-81 87-180 (307)
112 2e87_A Hypothetical protein PH 99.2 7.1E-11 2.4E-15 88.2 7.6 82 1-82 253-336 (357)
113 2fh5_B SR-beta, signal recogni 99.1 1.7E-10 5.9E-15 79.4 8.2 79 1-79 85-213 (214)
114 3dpu_A RAB family protein; roc 99.1 9.7E-11 3.3E-15 91.6 7.5 81 1-84 128-210 (535)
115 2gj8_A MNME, tRNA modification 99.1 1.3E-12 4.5E-17 87.8 -2.9 76 1-82 90-166 (172)
116 1lnz_A SPO0B-associated GTP-bi 99.1 1.4E-10 4.9E-15 86.3 7.7 83 1-85 243-333 (342)
117 1cip_A Protein (guanine nucleo 99.1 1.8E-11 6.2E-16 91.6 2.3 83 1-83 223-345 (353)
118 3pqc_A Probable GTP-binding pr 99.1 2.5E-10 8.4E-15 77.0 6.9 77 1-82 111-194 (195)
119 2xtz_A Guanine nucleotide-bind 99.1 3E-11 1E-15 90.4 2.1 82 1-82 213-345 (354)
120 2dyk_A GTP-binding protein; GT 99.1 5.5E-11 1.9E-15 77.9 3.1 74 1-80 86-160 (161)
121 1svi_A GTP-binding protein YSX 99.1 3.4E-10 1.2E-14 76.6 7.0 76 1-81 112-194 (195)
122 3a1s_A Iron(II) transport prot 99.1 1.5E-10 5.2E-15 82.9 5.1 76 1-81 90-166 (258)
123 3iev_A GTP-binding protein ERA 99.1 5.8E-10 2E-14 81.7 8.2 83 1-85 99-185 (308)
124 3b1v_A Ferrous iron uptake tra 99.0 1.7E-10 5.9E-15 83.3 4.5 76 1-81 87-163 (272)
125 1zcb_A G alpha I/13; GTP-bindi 99.0 9.2E-11 3.1E-15 88.0 2.6 82 1-82 231-353 (362)
126 1azs_C GS-alpha; complex (lyas 99.0 1.1E-10 3.8E-15 88.6 2.5 82 1-82 247-385 (402)
127 3i8s_A Ferrous iron transport 99.0 8.5E-11 2.9E-15 84.8 1.1 78 1-83 92-170 (274)
128 3iby_A Ferrous iron transport 99.0 1.2E-10 4.3E-15 83.3 1.8 74 1-79 90-164 (256)
129 2lkc_A Translation initiation 98.9 2.2E-09 7.7E-14 71.3 7.0 76 1-83 85-172 (178)
130 3qq5_A Small GTP-binding prote 98.9 1.7E-09 5.8E-14 82.6 5.0 68 14-83 130-197 (423)
131 3ohm_A Guanine nucleotide-bind 98.9 5E-10 1.7E-14 83.0 1.9 82 3-84 209-320 (327)
132 3h2y_A GTPase family protein; 98.8 6E-09 2E-13 78.2 6.8 75 1-80 76-158 (368)
133 3gee_A MNME, tRNA modification 98.8 4.8E-09 1.6E-13 81.2 6.2 79 1-81 319-397 (476)
134 4dhe_A Probable GTP-binding pr 98.8 5.5E-09 1.9E-13 72.1 5.8 81 1-84 122-213 (223)
135 3k53_A Ferrous iron transport 98.8 6.8E-09 2.3E-13 74.5 5.1 80 1-84 88-168 (271)
136 4dcu_A GTP-binding protein ENG 98.8 1E-08 3.5E-13 78.7 6.3 80 1-83 284-370 (456)
137 2hjg_A GTP-binding protein ENG 98.8 1.3E-08 4.3E-13 77.8 6.3 79 1-82 264-349 (436)
138 4fid_A G protein alpha subunit 98.7 2.7E-09 9.1E-14 79.4 1.4 82 1-82 191-328 (340)
139 1xzp_A Probable tRNA modificat 98.7 2.8E-08 9.5E-13 77.1 6.7 75 1-82 330-405 (482)
140 3cb4_D GTP-binding protein LEP 98.7 4.1E-08 1.4E-12 77.9 6.6 79 1-82 101-182 (599)
141 2ywe_A GTP-binding protein LEP 98.6 4.9E-08 1.7E-12 77.5 6.3 79 1-82 103-184 (600)
142 1nrj_B SR-beta, signal recogni 98.6 9.3E-09 3.2E-13 70.8 1.1 68 1-68 89-170 (218)
143 3ec1_A YQEH GTPase; atnos1, at 98.6 4.3E-08 1.5E-12 73.6 4.8 75 1-80 78-160 (369)
144 1udx_A The GTP-binding protein 98.6 1.8E-07 6.3E-12 71.3 7.9 84 1-85 242-328 (416)
145 2qtf_A Protein HFLX, GTP-bindi 98.6 1.7E-07 5.8E-12 70.3 7.4 82 1-82 264-354 (364)
146 3sjy_A Translation initiation 98.6 1.2E-07 4.2E-12 71.7 6.6 81 1-82 105-192 (403)
147 3geh_A MNME, tRNA modification 98.5 5.7E-08 1.9E-12 75.0 4.4 76 1-83 310-385 (462)
148 1wf3_A GTP-binding protein; GT 98.5 3.8E-08 1.3E-12 72.0 2.2 80 1-84 93-175 (301)
149 2qag_A Septin-2, protein NEDD5 98.4 4E-08 1.4E-12 73.5 1.3 81 1-85 150-236 (361)
150 1mky_A Probable GTP-binding pr 98.4 1.8E-07 6.3E-12 71.4 4.7 76 1-83 88-167 (439)
151 2hf9_A Probable hydrogenase ni 98.4 2.7E-07 9.3E-12 63.8 4.9 56 27-82 165-224 (226)
152 1s0u_A EIF-2-gamma, translatio 98.4 1.1E-06 3.9E-11 66.5 8.6 77 1-82 111-198 (408)
153 1wb1_A Translation elongation 98.4 5.8E-07 2E-11 69.6 7.2 75 1-81 103-188 (482)
154 1mky_A Probable GTP-binding pr 98.4 4.1E-07 1.4E-11 69.5 5.5 58 25-82 291-355 (439)
155 1ega_A Protein (GTP-binding pr 98.3 7.3E-07 2.5E-11 65.0 5.8 79 1-83 95-176 (301)
156 1puj_A YLQF, conserved hypothe 98.3 4.2E-07 1.4E-11 65.9 4.1 74 1-81 30-105 (282)
157 3izy_P Translation initiation 98.3 5E-07 1.7E-11 70.9 3.9 78 1-81 82-167 (537)
158 1kk1_A EIF2gamma; initiation o 98.3 3.2E-06 1.1E-10 64.0 8.0 77 1-82 113-200 (410)
159 3tr5_A RF-3, peptide chain rel 98.2 1.5E-06 5.2E-11 68.0 6.0 26 57-82 252-277 (528)
160 2hjg_A GTP-binding protein ENG 98.2 4E-07 1.4E-11 69.5 2.7 77 1-83 89-166 (436)
161 2qnr_A Septin-2, protein NEDD5 98.2 7.3E-07 2.5E-11 65.1 4.0 65 20-85 149-217 (301)
162 1g7s_A Translation initiation 98.2 5.9E-06 2E-10 65.6 9.4 75 1-81 100-217 (594)
163 1jny_A EF-1-alpha, elongation 98.2 3.4E-07 1.1E-11 70.0 1.3 73 1-74 114-205 (435)
164 2wsm_A Hydrogenase expression/ 98.1 2.1E-06 7.1E-11 59.1 4.2 58 26-83 154-215 (221)
165 1r5b_A Eukaryotic peptide chai 98.0 6.9E-07 2.4E-11 68.9 -0.5 73 1-73 151-243 (467)
166 1pui_A ENGB, probable GTP-bind 98.0 8.8E-06 3E-10 55.3 5.1 58 25-82 136-199 (210)
167 2aka_B Dynamin-1; fusion prote 97.9 1.9E-06 6.4E-11 62.0 1.2 75 1-79 169-250 (299)
168 2qag_C Septin-7; cell cycle, c 97.9 1.8E-06 6.3E-11 65.8 0.9 71 9-82 152-227 (418)
169 1d2e_A Elongation factor TU (E 97.9 5.2E-06 1.8E-10 62.6 3.4 78 1-81 96-194 (397)
170 2c78_A Elongation factor TU-A; 97.9 4.4E-06 1.5E-10 63.1 2.6 78 1-81 105-211 (405)
171 2xtp_A GTPase IMAP family memb 97.9 3.5E-06 1.2E-10 59.6 1.8 58 27-84 139-210 (260)
172 1zun_B Sulfate adenylate trans 97.9 5E-06 1.7E-10 63.4 2.7 71 1-74 134-216 (434)
173 2elf_A Protein translation elo 97.9 1.5E-05 5.1E-10 59.8 5.2 69 10-81 97-179 (370)
174 1yrb_A ATP(GTP)binding protein 97.9 3.8E-05 1.3E-09 54.0 6.8 59 25-83 170-258 (262)
175 3p32_A Probable GTPase RV1496/ 97.8 1.3E-05 4.4E-10 59.6 4.1 57 26-82 217-284 (355)
176 1zo1_I IF2, translation initia 97.8 2.3E-06 7.7E-11 66.7 -0.1 54 25-78 102-163 (501)
177 2dy1_A Elongation factor G; tr 97.8 2.4E-05 8.3E-10 62.8 5.6 26 56-81 248-273 (665)
178 3p26_A Elongation factor 1 alp 97.8 3.4E-05 1.2E-09 59.6 6.0 72 1-72 141-228 (483)
179 3j2k_7 ERF3, eukaryotic polype 97.8 5.2E-05 1.8E-09 58.0 6.9 50 25-74 153-217 (439)
180 2ged_A SR-beta, signal recogni 97.8 2.4E-05 8.3E-10 52.3 4.5 40 1-40 125-170 (193)
181 3t5d_A Septin-7; GTP-binding p 97.8 4.4E-06 1.5E-10 59.8 0.7 56 26-81 144-203 (274)
182 3l82_B F-box only protein 4; T 97.6 2.3E-05 7.9E-10 54.8 2.7 59 25-83 161-224 (227)
183 4dcu_A GTP-binding protein ENG 97.6 2.5E-05 8.5E-10 59.9 3.1 66 13-82 119-185 (456)
184 1f60_A Elongation factor EEF1A 97.6 2.7E-05 9.3E-10 59.8 3.2 48 25-72 143-202 (458)
185 2j69_A Bacterial dynamin-like 97.6 4.7E-05 1.6E-09 61.4 4.4 80 1-82 207-325 (695)
186 3avx_A Elongation factor TS, e 97.6 4.8E-05 1.6E-09 64.5 4.5 78 1-81 389-485 (1289)
187 1t9h_A YLOQ, probable GTPase E 97.6 1.5E-05 5.2E-10 58.4 1.3 72 1-74 93-169 (307)
188 3l2o_B F-box only protein 4; s 97.5 0.00025 8.5E-09 51.8 6.8 59 25-83 246-309 (312)
189 3lxx_A GTPase IMAP family memb 97.4 0.00031 1.1E-08 48.9 6.0 59 26-84 145-216 (239)
190 3izq_1 HBS1P, elongation facto 97.4 0.00012 4.2E-09 58.2 4.2 46 27-72 306-362 (611)
191 3cnl_A YLQF, putative uncharac 97.4 0.00011 3.6E-09 52.6 3.5 52 26-78 46-97 (262)
192 2rcn_A Probable GTPase ENGC; Y 97.4 0.00022 7.5E-09 53.3 5.3 66 9-76 145-213 (358)
193 1dar_A EF-G, elongation factor 97.4 0.00029 9.8E-09 56.8 5.9 27 56-82 256-282 (691)
194 3mca_A HBS1, elongation factor 97.3 8.1E-05 2.8E-09 59.0 2.2 45 26-70 314-371 (592)
195 3lxw_A GTPase IMAP family memb 97.3 0.00039 1.3E-08 49.0 5.5 59 26-84 139-210 (247)
196 2p67_A LAO/AO transport system 97.1 0.00064 2.2E-08 50.2 5.0 56 26-81 194-260 (341)
197 2www_A Methylmalonic aciduria 97.0 0.00092 3.1E-08 49.6 5.3 56 26-81 212-278 (349)
198 2rdo_7 EF-G, elongation factor 97.0 0.0023 7.9E-08 51.7 7.6 27 56-82 262-288 (704)
199 2xex_A Elongation factor G; GT 96.9 0.0025 8.4E-08 51.4 6.9 27 56-82 254-280 (693)
200 2x2e_A Dynamin-1; nitration, h 96.5 0.00016 5.4E-09 53.6 -2.2 52 25-78 196-254 (353)
201 2h5e_A Peptide chain release f 96.5 0.0053 1.8E-07 48.0 6.1 27 56-82 252-278 (529)
202 1jwy_B Dynamin A GTPase domain 96.3 0.0031 1.1E-07 45.4 3.9 58 25-84 197-264 (315)
203 3t34_A Dynamin-related protein 96.3 0.0007 2.4E-08 50.2 0.3 64 15-78 191-257 (360)
204 1wxq_A GTP-binding protein; st 95.9 0.00098 3.3E-08 50.4 -0.7 49 26-74 214-262 (397)
205 3vqt_A RF-3, peptide chain rel 95.4 0.028 9.6E-07 44.1 5.8 27 56-82 269-295 (548)
206 2qm8_A GTPase/ATPase; G protei 95.2 0.037 1.3E-06 40.7 5.6 55 27-81 194-260 (337)
207 3zvr_A Dynamin-1; hydrolase, D 95.1 0.0034 1.2E-07 51.2 -0.1 53 25-79 216-275 (772)
208 3j25_A Tetracycline resistance 94.5 0.038 1.3E-06 44.1 4.3 26 56-81 213-238 (638)
209 2dby_A GTP-binding protein; GD 92.6 0.029 9.8E-07 42.0 0.7 50 26-75 201-255 (368)
210 1h65_A Chloroplast outer envel 92.0 0.065 2.2E-06 37.8 1.9 39 1-40 126-168 (270)
211 4fn5_A EF-G 1, elongation fact 91.0 0.58 2E-05 37.8 6.6 27 56-82 265-291 (709)
212 2qpt_A EH domain-containing pr 89.1 0.084 2.9E-06 41.4 0.3 38 1-40 195-232 (550)
213 3def_A T7I23.11 protein; chlor 88.2 0.19 6.3E-06 35.3 1.6 38 1-39 123-164 (262)
214 1n0u_A EF-2, elongation factor 88.2 0.13 4.3E-06 42.5 0.8 36 1-39 128-163 (842)
215 1jal_A YCHF protein; nucleotid 78.9 6.9 0.00024 29.0 6.7 41 25-65 198-240 (363)
216 4a9a_A Ribosome-interacting GT 61.2 19 0.00065 26.8 5.7 50 26-80 249-298 (376)
217 3do6_A Formate--tetrahydrofola 53.0 38 0.0013 26.5 6.1 71 9-81 345-417 (543)
218 1ko7_A HPR kinase/phosphatase; 48.1 25 0.00085 25.5 4.4 51 25-80 79-129 (314)
219 1tq4_A IIGP1, interferon-induc 45.8 12 0.00039 28.3 2.3 59 26-84 175-255 (413)
220 2j37_W Signal recognition part 44.0 7.1 0.00024 30.3 1.0 51 27-79 240-310 (504)
221 2qag_B Septin-6, protein NEDD5 40.8 11 0.00039 28.6 1.6 40 24-63 174-217 (427)
222 1ni3_A YCHF GTPase, YCHF GTP-b 35.4 55 0.0019 24.4 4.6 40 26-65 224-269 (392)
223 1cmb_A Met APO-repressor; DNA- 33.2 26 0.0009 20.6 2.0 23 104-126 52-75 (104)
224 3pzx_A Formate--tetrahydrofola 28.8 47 0.0016 26.1 3.3 71 9-82 359-430 (557)
225 4dzz_A Plasmid partitioning pr 28.7 53 0.0018 21.0 3.3 48 11-59 112-162 (206)
226 3ec1_A YQEH GTPase; atnos1, at 28.4 21 0.00072 26.2 1.3 43 26-68 274-317 (369)
227 2ale_A SNU13, NHP2/L7AE family 26.3 81 0.0028 19.7 3.6 35 25-61 47-81 (134)
228 3dm5_A SRP54, signal recogniti 26.1 59 0.002 24.7 3.4 40 28-71 241-280 (443)
229 3cf4_G Acetyl-COA decarboxylas 25.6 1.2E+02 0.0042 19.3 4.6 35 25-61 34-68 (170)
230 1j8m_F SRP54, signal recogniti 22.9 68 0.0023 22.7 3.1 43 26-72 238-281 (297)
231 3cwq_A Para family chromosome 22.7 1.6E+02 0.0056 19.1 6.0 52 7-59 102-153 (209)
232 2pd2_A Hypothetical protein ST 21.5 1.2E+02 0.0041 17.5 3.6 34 1-34 4-37 (108)
233 1knx_A Probable HPR(Ser) kinas 21.5 1.1E+02 0.0038 22.0 4.0 51 25-80 82-132 (312)
No 1
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.85 E-value=5.7e-21 Score=133.38 Aligned_cols=127 Identities=75% Similarity=1.226 Sum_probs=107.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
|||++++.+|..+..|+..+.....++|+++|+||+|+.++.+......++...+++||++||++|.||+++|.+|++.+
T Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 94 MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999988889999999999999876555555567788899999999999999999999999999
Q ss_pred hcCCCCCCcCCCCCCCCccCcCHHHHHHHHHHHHHHcCCCCCCCCCC
Q 032950 81 AGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDD 127 (130)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 127 (130)
...........+...++...++....++....+..+...++|++|+|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 220 (221)
T 3gj0_A 174 IGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 220 (221)
T ss_dssp HTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHHHTC--------
T ss_pred HhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhhhccCCCCCCCC
Confidence 99988887777788888889999999999999999999999998776
No 2
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.81 E-value=6.9e-20 Score=128.79 Aligned_cols=85 Identities=28% Similarity=0.475 Sum_probs=73.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh-CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||+++++||+.+..|+..+... .+++|++|||||+|+.+ +.|+.+ +..+++++++.||+|||++|.||+++|..|+
T Consensus 92 v~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~ 171 (216)
T 4dkx_A 92 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 171 (216)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred EeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHH
Confidence 69999999999999999998876 46899999999999986 677765 8899999999999999999999999999999
Q ss_pred HHHhcCCC
Q 032950 78 RKLAGDPN 85 (130)
Q Consensus 78 ~~i~~~~~ 85 (130)
+.+.....
T Consensus 172 ~~i~~~~~ 179 (216)
T 4dkx_A 172 AALPGMES 179 (216)
T ss_dssp HHC-----
T ss_pred HHHHhhhc
Confidence 98875443
No 3
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=9.8e-17 Score=112.22 Aligned_cols=83 Identities=25% Similarity=0.386 Sum_probs=71.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||+++++||+.+..|...+... ..++|+++||||+||.+ +.+..+ +..++..++++||+|||++|.||+++|..|
T Consensus 118 Vydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l 197 (211)
T 2g3y_A 118 VYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 197 (211)
T ss_dssp EEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 69999999999999999887753 25899999999999975 556654 667788889999999999999999999999
Q ss_pred HHHHhcC
Q 032950 77 ARKLAGD 83 (130)
Q Consensus 77 ~~~i~~~ 83 (130)
++.+...
T Consensus 198 ~~~i~~~ 204 (211)
T 2g3y_A 198 VRQVRLR 204 (211)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988543
No 4
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.68 E-value=5.2e-16 Score=106.65 Aligned_cols=84 Identities=25% Similarity=0.300 Sum_probs=73.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||++++.||..+..|+..+.... .++|+++||||+|+.+ +.++.+ +..++..++++|+++||++|.||+++|..|
T Consensus 103 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l 182 (195)
T 3cbq_A 103 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 182 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHH
Confidence 699999999999999999888764 4899999999999975 556654 678888889999999999999999999999
Q ss_pred HHHHhcCC
Q 032950 77 ARKLAGDP 84 (130)
Q Consensus 77 ~~~i~~~~ 84 (130)
++.+....
T Consensus 183 ~~~i~~~~ 190 (195)
T 3cbq_A 183 VRQIRLRR 190 (195)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhc
Confidence 99886543
No 5
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.68 E-value=4e-16 Score=103.76 Aligned_cols=83 Identities=25% Similarity=0.304 Sum_probs=73.1
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCC--CCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||++++++|..+..|+..+..... ++|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.||+++|..|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 6999999999999999999888754 899999999999975 556655 678888999999999999999999999999
Q ss_pred HHHHhcC
Q 032950 77 ARKLAGD 83 (130)
Q Consensus 77 ~~~i~~~ 83 (130)
++.+...
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9987643
No 6
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=8.8e-16 Score=104.63 Aligned_cols=84 Identities=24% Similarity=0.480 Sum_probs=73.8
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|+.+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++...++++|++||++|.||+++|..|+
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 181 (191)
T 3dz8_A 102 MYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV 181 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 699999999999999999998875 6899999999999975 455554 6778888999999999999999999999999
Q ss_pred HHHhcCC
Q 032950 78 RKLAGDP 84 (130)
Q Consensus 78 ~~i~~~~ 84 (130)
+.+.++.
T Consensus 182 ~~i~~~~ 188 (191)
T 3dz8_A 182 DAICDKM 188 (191)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 9887654
No 7
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.64 E-value=8.9e-16 Score=104.50 Aligned_cols=83 Identities=22% Similarity=0.439 Sum_probs=72.1
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCC---CcccCHH-HHHHHHhcC-CcEEEeccCCCCChHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK---NRQVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~---~~~v~~~-~~~~~~~~~-~~~~e~Sak~~~~v~~lf 73 (130)
|||++++.||..+..|+..+.... .++|+++||||+|+. .+.++.+ +..++..++ +.|+++||++|.||+++|
T Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf 171 (184)
T 3ihw_A 92 VFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVF 171 (184)
T ss_dssp EEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHH
Confidence 699999999999999999988764 589999999999994 2556654 678888887 899999999999999999
Q ss_pred HHHHHHHhcC
Q 032950 74 LYLARKLAGD 83 (130)
Q Consensus 74 ~~l~~~i~~~ 83 (130)
.+|++.+.+.
T Consensus 172 ~~l~~~i~~~ 181 (184)
T 3ihw_A 172 QDVAQKVVAL 181 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 8
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.64 E-value=3.6e-16 Score=108.87 Aligned_cols=85 Identities=18% Similarity=0.324 Sum_probs=73.5
Q ss_pred CeecCcHHHHHh-HHHHHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcCC-cEEEeccC
Q 032950 1 MFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKNL-QYYEISAK 64 (130)
Q Consensus 1 V~d~~~~~s~~~-~~~~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~~-~~~e~Sak 64 (130)
|||++++.||.. +..|+..+....+++|+++||||+|+.+ +.++.+ +..++..+++ +|++|||+
T Consensus 105 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~ 184 (214)
T 3q3j_B 105 CFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF 184 (214)
T ss_dssp EEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccC
Confidence 699999999999 6899999998888999999999999964 456554 7788999998 89999999
Q ss_pred CCCC-hHHHHHHHHHHHhcCCC
Q 032950 65 SNYN-FEKPFLYLARKLAGDPN 85 (130)
Q Consensus 65 ~~~~-v~~lf~~l~~~i~~~~~ 85 (130)
+|.| |+++|..|++.+.....
T Consensus 185 ~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 185 TSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp TCHHHHHHHHHHHHHHHHC---
T ss_pred CCcccHHHHHHHHHHHHhccCc
Confidence 9998 99999999999876544
No 9
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.64 E-value=5.2e-16 Score=105.76 Aligned_cols=82 Identities=23% Similarity=0.374 Sum_probs=72.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC----CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEecc-CCCCChHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISA-KSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~----~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sa-k~~~~v~~lf 73 (130)
|||+++++||..+..|+..+.... .++|+++||||+|+.+ +.++.+ +..++.+++++|+++|| ++|.||+++|
T Consensus 98 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf 177 (187)
T 3c5c_A 98 VYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVF 177 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHH
Confidence 699999999999999999988763 6899999999999975 556654 77888899999999999 8999999999
Q ss_pred HHHHHHHhc
Q 032950 74 LYLARKLAG 82 (130)
Q Consensus 74 ~~l~~~i~~ 82 (130)
..|++.+.+
T Consensus 178 ~~l~~~i~~ 186 (187)
T 3c5c_A 178 HEAVREARR 186 (187)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999998764
No 10
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.64 E-value=1.5e-15 Score=104.03 Aligned_cols=82 Identities=26% Similarity=0.394 Sum_probs=70.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||+++++||+.+..|...+.... .++|+++||||+|+.. +.+... +..++..++++|++|||++|.||+++|..|
T Consensus 87 v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l 166 (192)
T 2cjw_A 87 VYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGI 166 (192)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHH
Confidence 699999999999999988877653 5799999999999965 555544 567777888999999999999999999999
Q ss_pred HHHHhc
Q 032950 77 ARKLAG 82 (130)
Q Consensus 77 ~~~i~~ 82 (130)
++.+..
T Consensus 167 ~~~~~~ 172 (192)
T 2cjw_A 167 VRQVRL 172 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998753
No 11
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.64 E-value=8.3e-16 Score=102.64 Aligned_cols=82 Identities=23% Similarity=0.369 Sum_probs=69.8
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.++.+ ...++..++++++++||++|.||+++|.+|
T Consensus 84 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 163 (175)
T 2nzj_A 84 VYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGV 163 (175)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 699999999999999998887652 4899999999999976 556554 667888889999999999999999999999
Q ss_pred HHHHhc
Q 032950 77 ARKLAG 82 (130)
Q Consensus 77 ~~~i~~ 82 (130)
++.+..
T Consensus 164 ~~~~~~ 169 (175)
T 2nzj_A 164 VRQLRL 169 (175)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 12
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.64 E-value=1.1e-15 Score=101.28 Aligned_cols=82 Identities=23% Similarity=0.355 Sum_probs=71.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||++++++|+.+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.||+++|.+|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 158 (166)
T 3q72_A 79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 158 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Confidence 689999999999999998887753 5899999999999975 556655 667888889999999999999999999999
Q ss_pred HHHHhc
Q 032950 77 ARKLAG 82 (130)
Q Consensus 77 ~~~i~~ 82 (130)
++.+..
T Consensus 159 ~~~~~~ 164 (166)
T 3q72_A 159 VRQIRL 164 (166)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998754
No 13
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.64 E-value=1.4e-15 Score=104.73 Aligned_cols=84 Identities=31% Similarity=0.480 Sum_probs=73.8
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCC-cEEEeccCCCCChHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNL-QYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l 76 (130)
|||++++.+|+.+..|+..+.... .++|+++|+||+|+.+ +.+..+ +..++...++ ++|++||++|.||+++|.+|
T Consensus 108 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 187 (201)
T 2hup_A 108 AYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRV 187 (201)
T ss_dssp EEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHH
Confidence 699999999999999999988875 6899999999999976 556554 6788888898 99999999999999999999
Q ss_pred HHHHhcCC
Q 032950 77 ARKLAGDP 84 (130)
Q Consensus 77 ~~~i~~~~ 84 (130)
++.+.+..
T Consensus 188 ~~~i~~~~ 195 (201)
T 2hup_A 188 ATELIMRH 195 (201)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99887644
No 14
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.63 E-value=2.7e-15 Score=99.56 Aligned_cols=84 Identities=25% Similarity=0.482 Sum_probs=73.6
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.++.+..+ ...++.+.+++++++||++|.||+++|..|.+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 161 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999888775 5899999999999966666554 67788888999999999999999999999999
Q ss_pred HHhcCC
Q 032950 79 KLAGDP 84 (130)
Q Consensus 79 ~i~~~~ 84 (130)
.+.++.
T Consensus 162 ~~~~~~ 167 (170)
T 1g16_A 162 LIQEKI 167 (170)
T ss_dssp HHHHTC
T ss_pred HHHHHh
Confidence 887653
No 15
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.62 E-value=2e-15 Score=101.41 Aligned_cols=82 Identities=20% Similarity=0.356 Sum_probs=68.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC----CCCcEEEEecCCCCC---CcccCHH-HHHHHHhc-CCcEEEeccCCCCChHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVK---NRQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEK 71 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~----~~~piilv~NK~Dl~---~~~v~~~-~~~~~~~~-~~~~~e~Sak~~~~v~~ 71 (130)
|||+++++||..+..|+..+.... .++|+++||||+|+. .+.+..+ +..++... ++++|++||++|.||++
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 158 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDR 158 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHH
Confidence 699999999999999877666542 589999999999994 3556554 66777776 68899999999999999
Q ss_pred HHHHHHHHHhc
Q 032950 72 PFLYLARKLAG 82 (130)
Q Consensus 72 lf~~l~~~i~~ 82 (130)
+|..|++.+.+
T Consensus 159 lf~~l~~~~~~ 169 (178)
T 2iwr_A 159 VFQEVAQKVVT 169 (178)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 16
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.62 E-value=3.2e-15 Score=100.80 Aligned_cols=82 Identities=33% Similarity=0.540 Sum_probs=72.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccC-CCCChHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAK-SNYNFEKPFLY 75 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak-~~~~v~~lf~~ 75 (130)
|||++++.||+.+..|+..+... ..++|+++|+||+|+.+ +.+..+ ...++..++++|+++||+ +|.||+++|..
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~ 175 (183)
T 3kkq_A 96 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHD 175 (183)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHH
Confidence 68999999999999999988764 36899999999999976 556655 778888899999999999 99999999999
Q ss_pred HHHHHhc
Q 032950 76 LARKLAG 82 (130)
Q Consensus 76 l~~~i~~ 82 (130)
|++.+.+
T Consensus 176 l~~~i~~ 182 (183)
T 3kkq_A 176 LVRVIRQ 182 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9998764
No 17
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.62 E-value=2.5e-15 Score=101.27 Aligned_cols=83 Identities=29% Similarity=0.555 Sum_probs=67.8
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|+.+..|+..+.... .++|+++|+||+|+.+ +.++.+ ...++..++++++++||++|.||+++|..|+
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 166 (183)
T 2fu5_C 87 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166 (183)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 689999999999999999988764 5899999999999976 555554 6788888899999999999999999999999
Q ss_pred HHHhcC
Q 032950 78 RKLAGD 83 (130)
Q Consensus 78 ~~i~~~ 83 (130)
+.+.+.
T Consensus 167 ~~i~~~ 172 (183)
T 2fu5_C 167 RDIKAK 172 (183)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988654
No 18
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=3.3e-15 Score=101.77 Aligned_cols=82 Identities=20% Similarity=0.372 Sum_probs=71.2
Q ss_pred CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcCC-cEEEeccC
Q 032950 1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKNL-QYYEISAK 64 (130)
Q Consensus 1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~~-~~~e~Sak 64 (130)
|||++++.+|..+. .|+..+....+++|+++|+||+|+.+ +.+..+ +..++..+++ +|+++||+
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 175 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL 175 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCC
Confidence 69999999999997 79999988777999999999999965 245544 6778888887 89999999
Q ss_pred CCCChHHHHHHHHHHHhc
Q 032950 65 SNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 65 ~~~~v~~lf~~l~~~i~~ 82 (130)
+|.||+++|..|++.++.
T Consensus 176 ~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 176 TQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999998763
No 19
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.62 E-value=2.3e-15 Score=102.72 Aligned_cols=84 Identities=20% Similarity=0.349 Sum_probs=73.5
Q ss_pred CeecCcHHHHHhH-HHHHHHHHHhCCCCcEEEEecCCCCCC---cccCHH-HHHHHHhcCCc-EEEeccCCCCChHHHHH
Q 032950 1 MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN---RQVKAK-QVTFHRKKNLQ-YYEISAKSNYNFEKPFL 74 (130)
Q Consensus 1 V~d~~~~~s~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~---~~v~~~-~~~~~~~~~~~-~~e~Sak~~~~v~~lf~ 74 (130)
|||++++.+|..+ ..|+..+.....++|+++||||+|+.+ +.+..+ +..++..+++. ++++||++|.||+++|.
T Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 180 (194)
T 3reg_A 101 CFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFE 180 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHH
Confidence 6899999999998 679999888778999999999999964 445554 67888888988 99999999999999999
Q ss_pred HHHHHHhcCC
Q 032950 75 YLARKLAGDP 84 (130)
Q Consensus 75 ~l~~~i~~~~ 84 (130)
.|++.+..+.
T Consensus 181 ~l~~~i~~~~ 190 (194)
T 3reg_A 181 KSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHCSC
T ss_pred HHHHHHHhcC
Confidence 9999987654
No 20
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.62 E-value=2.7e-15 Score=100.51 Aligned_cols=83 Identities=28% Similarity=0.499 Sum_probs=73.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
|||++++.+|..+..|+..+....+++|+++|+||+|+.+ +.+... ...++...+++++++||++|.||+++|.+|.+
T Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 167 (181)
T 3tw8_B 88 VYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITE 167 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999988878999999999999876 445544 67788888999999999999999999999999
Q ss_pred HHhcC
Q 032950 79 KLAGD 83 (130)
Q Consensus 79 ~i~~~ 83 (130)
.+.+.
T Consensus 168 ~~~~~ 172 (181)
T 3tw8_B 168 LVLRA 172 (181)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 21
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.62 E-value=2.1e-15 Score=101.50 Aligned_cols=86 Identities=23% Similarity=0.293 Sum_probs=72.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||++++++|+.+..|+..+.... .++|+++|+||+|+.+ +.+..+ +..++..++++|+++||++|.||+++|..|
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 163 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Confidence 689999999999999999887763 4899999999999965 556554 778899999999999999999999999999
Q ss_pred HHHHhcCCCC
Q 032950 77 ARKLAGDPNL 86 (130)
Q Consensus 77 ~~~i~~~~~~ 86 (130)
++.+......
T Consensus 164 ~~~~~~~~~~ 173 (181)
T 3t5g_A 164 ILEAEKMDGA 173 (181)
T ss_dssp HHHHHTC---
T ss_pred HHHHHHhcCC
Confidence 9999876543
No 22
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.62 E-value=4e-15 Score=101.21 Aligned_cols=86 Identities=28% Similarity=0.490 Sum_probs=74.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+... ...++..++++++++||++|.||+++|.+|+
T Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 174 (196)
T 3tkl_A 95 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 174 (196)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Confidence 689999999999999999988774 5899999999999975 555544 6788888999999999999999999999999
Q ss_pred HHHhcCCCC
Q 032950 78 RKLAGDPNL 86 (130)
Q Consensus 78 ~~i~~~~~~ 86 (130)
+.+.+....
T Consensus 175 ~~i~~~~~~ 183 (196)
T 3tkl_A 175 AEIKKRMGP 183 (196)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHhcc
Confidence 998876544
No 23
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.61 E-value=5.2e-15 Score=98.92 Aligned_cols=82 Identities=34% Similarity=0.561 Sum_probs=71.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++..++++++++||++|.||+++|.+|+
T Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 173 (179)
T 1z0f_A 94 VYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA 173 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 689999999999999999988775 6899999999999965 455544 6788888899999999999999999999999
Q ss_pred HHHhc
Q 032950 78 RKLAG 82 (130)
Q Consensus 78 ~~i~~ 82 (130)
+.+.+
T Consensus 174 ~~i~~ 178 (179)
T 1z0f_A 174 KKIYQ 178 (179)
T ss_dssp HHHC-
T ss_pred HHHhh
Confidence 88754
No 24
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.61 E-value=4e-15 Score=98.28 Aligned_cols=82 Identities=32% Similarity=0.529 Sum_probs=71.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++..++++++++||++|.||+++|.+|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 689999999999999999988764 3899999999999975 455544 677888889999999999999999999999
Q ss_pred HHHHhc
Q 032950 77 ARKLAG 82 (130)
Q Consensus 77 ~~~i~~ 82 (130)
++.+.+
T Consensus 162 ~~~i~~ 167 (168)
T 1u8z_A 162 MREIRA 167 (168)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998764
No 25
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.60 E-value=8.5e-15 Score=97.95 Aligned_cols=83 Identities=28% Similarity=0.566 Sum_probs=71.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-----CCCcEEEEecCCCCCCcccCHH-HHHHHH-hcCCcEEEeccCCCCChHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAK-QVTFHR-KKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-----~~~piilv~NK~Dl~~~~v~~~-~~~~~~-~~~~~~~e~Sak~~~~v~~lf 73 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.++.+..+ ...++. ..+++++++||++|.||+++|
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 165 (177)
T 1wms_A 86 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165 (177)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHH
Confidence 689999999999999999987653 5789999999999986666554 667776 556899999999999999999
Q ss_pred HHHHHHHhcC
Q 032950 74 LYLARKLAGD 83 (130)
Q Consensus 74 ~~l~~~i~~~ 83 (130)
..|++.+.+.
T Consensus 166 ~~l~~~~~~~ 175 (177)
T 1wms_A 166 EEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 26
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.60 E-value=8.7e-15 Score=101.46 Aligned_cols=90 Identities=44% Similarity=0.818 Sum_probs=74.6
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+... ...++...++++|++||++|.||+++|..|+
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 170 (218)
T 4djt_A 91 FFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLA 170 (218)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHH
Confidence 689999999999999999988765 4699999999999976 355554 5677778889999999999999999999999
Q ss_pred HHHhcCCCCCCcC
Q 032950 78 RKLAGDPNLHFVE 90 (130)
Q Consensus 78 ~~i~~~~~~~~~~ 90 (130)
+.+.+........
T Consensus 171 ~~~~~~~~~~~~~ 183 (218)
T 4djt_A 171 RIFTGRPDLIFVS 183 (218)
T ss_dssp HHHHCCTTCCBCS
T ss_pred HHHhccccccccc
Confidence 9998876554443
No 27
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.60 E-value=5.8e-15 Score=98.87 Aligned_cols=84 Identities=25% Similarity=0.460 Sum_probs=71.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC---CCCc-EEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC---ENIP-IVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFL 74 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~---~~~p-iilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~ 74 (130)
|||++++.+|+.+..|+..+.... .+.| +++|+||+|+.+ +.++.+ ...++..++++++++||++|.||+++|.
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 165 (178)
T 2hxs_A 86 VYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQ 165 (178)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Confidence 699999999999999999887753 2455 899999999976 555554 6778888899999999999999999999
Q ss_pred HHHHHHhcCC
Q 032950 75 YLARKLAGDP 84 (130)
Q Consensus 75 ~l~~~i~~~~ 84 (130)
+|++.+.+..
T Consensus 166 ~l~~~~~~~~ 175 (178)
T 2hxs_A 166 KVAAEILGIK 175 (178)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHhhh
Confidence 9999887653
No 28
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.60 E-value=7.7e-15 Score=99.92 Aligned_cols=83 Identities=33% Similarity=0.579 Sum_probs=72.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.||+++|.+|+
T Consensus 100 v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 179 (191)
T 2a5j_A 100 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA 179 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 689999999999999999988764 5899999999999975 455554 6788888899999999999999999999999
Q ss_pred HHHhcC
Q 032950 78 RKLAGD 83 (130)
Q Consensus 78 ~~i~~~ 83 (130)
+.+.++
T Consensus 180 ~~i~~~ 185 (191)
T 2a5j_A 180 KEIYRK 185 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988654
No 29
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=7.1e-15 Score=99.76 Aligned_cols=84 Identities=33% Similarity=0.566 Sum_probs=73.8
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.++.+... ...++...+++++++||++|.||+++|.+|.
T Consensus 94 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 173 (195)
T 1x3s_A 94 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELV 173 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence 689999999999999999887764 5799999999999977666654 6788888899999999999999999999999
Q ss_pred HHHhcCC
Q 032950 78 RKLAGDP 84 (130)
Q Consensus 78 ~~i~~~~ 84 (130)
+.+....
T Consensus 174 ~~~~~~~ 180 (195)
T 1x3s_A 174 EKIIQTP 180 (195)
T ss_dssp HHHHTSG
T ss_pred HHHHhhh
Confidence 9987654
No 30
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.59 E-value=5e-15 Score=98.08 Aligned_cols=82 Identities=26% Similarity=0.520 Sum_probs=72.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
|||++++.+|+.+..|+..+.....+.|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.||+++|.+|.+
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 163 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE 163 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Confidence 6899999999999999999887767899999999999875 455444 67788888999999999999999999999999
Q ss_pred HHhc
Q 032950 79 KLAG 82 (130)
Q Consensus 79 ~i~~ 82 (130)
.+.+
T Consensus 164 ~~~~ 167 (168)
T 1z2a_A 164 KHLQ 167 (168)
T ss_dssp HHHC
T ss_pred HHhh
Confidence 8764
No 31
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=1.2e-14 Score=97.53 Aligned_cols=83 Identities=28% Similarity=0.550 Sum_probs=72.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.||+++|.+|.
T Consensus 90 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 169 (180)
T 2g6b_A 90 LYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA 169 (180)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 689999999999999999988775 5899999999999975 455544 6678888899999999999999999999999
Q ss_pred HHHhcC
Q 032950 78 RKLAGD 83 (130)
Q Consensus 78 ~~i~~~ 83 (130)
+.+.+.
T Consensus 170 ~~~~~~ 175 (180)
T 2g6b_A 170 KELKRR 175 (180)
T ss_dssp HHHHC-
T ss_pred HHHHHH
Confidence 988754
No 32
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.59 E-value=4.7e-15 Score=100.76 Aligned_cols=83 Identities=25% Similarity=0.497 Sum_probs=72.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|+.+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++..+++++|++||++|.||+++|.+|+
T Consensus 101 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 180 (189)
T 2gf9_A 101 MYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180 (189)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999988765 5899999999999975 455544 6788888899999999999999999999999
Q ss_pred HHHhcC
Q 032950 78 RKLAGD 83 (130)
Q Consensus 78 ~~i~~~ 83 (130)
+.+.++
T Consensus 181 ~~i~~~ 186 (189)
T 2gf9_A 181 DVICEK 186 (189)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988653
No 33
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.59 E-value=1.4e-14 Score=95.33 Aligned_cols=82 Identities=27% Similarity=0.545 Sum_probs=71.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCC--CCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|..+..|+..+..... ++|+++|+||+|+.++.+... ...++.+++++++++||++|.|++++|.+|.
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 6899999999999999998887643 899999999999977555544 6778888899999999999999999999999
Q ss_pred HHHhc
Q 032950 78 RKLAG 82 (130)
Q Consensus 78 ~~i~~ 82 (130)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T 2ce2_X 161 REIRQ 165 (166)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98764
No 34
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=5.8e-15 Score=102.05 Aligned_cols=83 Identities=33% Similarity=0.603 Sum_probs=72.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|+.+..|+..+.... .++|+++|+||+|+.+ +.+..+ +..++...++++|++||++|.||+++|.+|+
T Consensus 105 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 184 (201)
T 2ew1_A 105 TYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 184 (201)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 689999999999999999988775 5899999999999975 555544 6678888899999999999999999999999
Q ss_pred HHHhcC
Q 032950 78 RKLAGD 83 (130)
Q Consensus 78 ~~i~~~ 83 (130)
+.+...
T Consensus 185 ~~i~~~ 190 (201)
T 2ew1_A 185 CRLISE 190 (201)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988654
No 35
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.59 E-value=5.1e-15 Score=98.35 Aligned_cols=82 Identities=26% Similarity=0.540 Sum_probs=71.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.||+++|.+|+
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (170)
T 1z08_A 85 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 164 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 689999999999999999887654 5899999999999975 455544 6788888899999999999999999999999
Q ss_pred HHHhc
Q 032950 78 RKLAG 82 (130)
Q Consensus 78 ~~i~~ 82 (130)
+.+.+
T Consensus 165 ~~~~~ 169 (170)
T 1z08_A 165 KRMIE 169 (170)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 98764
No 36
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=99.77 Aligned_cols=83 Identities=31% Similarity=0.524 Sum_probs=72.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCC--CCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||++++.+|..+..|+..+..... ++|+++|+||+|+.+ +.+..+ ...++..+++++|++||++|.||+++|.+|
T Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 171 (206)
T 2bov_A 92 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL 171 (206)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHH
Confidence 6899999999999999999888753 899999999999976 455544 677888889999999999999999999999
Q ss_pred HHHHhcC
Q 032950 77 ARKLAGD 83 (130)
Q Consensus 77 ~~~i~~~ 83 (130)
++.+...
T Consensus 172 ~~~i~~~ 178 (206)
T 2bov_A 172 MREIRAR 178 (206)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 9988653
No 37
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.59 E-value=1.2e-14 Score=96.15 Aligned_cols=81 Identities=31% Similarity=0.553 Sum_probs=69.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhc-CCcEEEeccCCCCChHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPFLY 75 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~-~~~~~e~Sak~~~~v~~lf~~ 75 (130)
|||++++.+|..+..|+..+... ..++|+++|+||+|+.+ +.+..+ ...++..+ +.+++++||++|.|++++|.+
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 68999999999999999888775 35899999999999975 445544 66778777 789999999999999999999
Q ss_pred HHHHHh
Q 032950 76 LARKLA 81 (130)
Q Consensus 76 l~~~i~ 81 (130)
|++.+.
T Consensus 161 l~~~i~ 166 (167)
T 1c1y_A 161 LVRQIN 166 (167)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998774
No 38
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.59 E-value=2.2e-15 Score=102.14 Aligned_cols=82 Identities=22% Similarity=0.367 Sum_probs=70.7
Q ss_pred CeecCcHHHHHhH-HHHHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcC-CcEEEeccC
Q 032950 1 MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKN-LQYYEISAK 64 (130)
Q Consensus 1 V~d~~~~~s~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~-~~~~e~Sak 64 (130)
|||++++.||..+ ..|+..+....+++|+++||||+|+.+ +.++.+ +..++.+++ .+|+++||+
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 164 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 164 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeec
Confidence 6999999999999 689999888778999999999999963 345554 677888877 689999999
Q ss_pred -CCCChHHHHHHHHHHHhc
Q 032950 65 -SNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 65 -~~~~v~~lf~~l~~~i~~ 82 (130)
+|.||+++|..|++.+++
T Consensus 165 ~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 165 QSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TBHHHHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 689999999999998875
No 39
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.59 E-value=1.3e-14 Score=97.87 Aligned_cols=83 Identities=27% Similarity=0.533 Sum_probs=73.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.++.+..+ ...++..++++++++||++|.||+++|.+|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 161 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 689999999999999999888753 5899999999999987666655 6788888899999999999999999999999
Q ss_pred HHHhcC
Q 032950 78 RKLAGD 83 (130)
Q Consensus 78 ~~i~~~ 83 (130)
+.+...
T Consensus 162 ~~~~~~ 167 (189)
T 4dsu_A 162 REIRKH 167 (189)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988653
No 40
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.59 E-value=6.1e-15 Score=97.71 Aligned_cols=81 Identities=32% Similarity=0.582 Sum_probs=70.1
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.|++++|.+|+
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~ 164 (170)
T 1r2q_A 85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 689999999999999999888763 6899999999999865 455544 6678888899999999999999999999998
Q ss_pred HHHh
Q 032950 78 RKLA 81 (130)
Q Consensus 78 ~~i~ 81 (130)
+.+.
T Consensus 165 ~~~~ 168 (170)
T 1r2q_A 165 KKLP 168 (170)
T ss_dssp HTSC
T ss_pred HHHh
Confidence 8764
No 41
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.58 E-value=1.8e-15 Score=102.67 Aligned_cols=84 Identities=13% Similarity=0.082 Sum_probs=70.2
Q ss_pred CeecC------cHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCC-cEEEeccCCCCChHHHH
Q 032950 1 MFDVT------ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~------~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~-~~~e~Sak~~~~v~~lf 73 (130)
|||++ +.++|..+..|+.++.....++|+++|+||+|+.+.....+...++...++ +++++||++|.||+++|
T Consensus 104 v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 183 (198)
T 3t1o_A 104 VADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETL 183 (198)
T ss_dssp EEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHH
T ss_pred EEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHH
Confidence 68998 678899999999887544578999999999999764323347788888898 99999999999999999
Q ss_pred HHHHHHHhcCC
Q 032950 74 LYLARKLAGDP 84 (130)
Q Consensus 74 ~~l~~~i~~~~ 84 (130)
.+|++.+.++.
T Consensus 184 ~~l~~~i~~~~ 194 (198)
T 3t1o_A 184 KEVSRLVLARV 194 (198)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999887643
No 42
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.58 E-value=9.7e-15 Score=98.00 Aligned_cols=83 Identities=31% Similarity=0.526 Sum_probs=71.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|+.+..|+..+.... +++|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.||+++|.+|+
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 170 (181)
T 2efe_B 91 VFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIA 170 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999988764 5899999999999975 555544 6778888899999999999999999999999
Q ss_pred HHHhcC
Q 032950 78 RKLAGD 83 (130)
Q Consensus 78 ~~i~~~ 83 (130)
+.+...
T Consensus 171 ~~~~~~ 176 (181)
T 2efe_B 171 RRLPRV 176 (181)
T ss_dssp HTCC--
T ss_pred HHHHhc
Confidence 877554
No 43
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.58 E-value=1.1e-14 Score=99.77 Aligned_cols=84 Identities=25% Similarity=0.494 Sum_probs=73.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++..+++++|++||++|.||+++|.+|+
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 166 (203)
T 1zbd_A 87 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 166 (203)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999988765 5899999999999976 455544 6778888899999999999999999999999
Q ss_pred HHHhcCC
Q 032950 78 RKLAGDP 84 (130)
Q Consensus 78 ~~i~~~~ 84 (130)
+.+.++.
T Consensus 167 ~~i~~~~ 173 (203)
T 1zbd_A 167 DVICEKM 173 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887643
No 44
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.58 E-value=8e-15 Score=100.39 Aligned_cols=83 Identities=22% Similarity=0.369 Sum_probs=71.2
Q ss_pred CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcCC-cEEEeccC
Q 032950 1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKNL-QYYEISAK 64 (130)
Q Consensus 1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~~-~~~e~Sak 64 (130)
|||++++.+|..+. .|+..+....+++|+++|+||+|+.+ +.+..+ ...++..++. +|+++||+
T Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 177 (201)
T 2q3h_A 98 CFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSAL 177 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecC
Confidence 69999999999997 79999988777999999999999864 334444 6678888887 89999999
Q ss_pred CCCChHHHHHHHHHHHhcC
Q 032950 65 SNYNFEKPFLYLARKLAGD 83 (130)
Q Consensus 65 ~~~~v~~lf~~l~~~i~~~ 83 (130)
+|.||+++|..|++.+.+.
T Consensus 178 ~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 178 TQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 9999999999999987643
No 45
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.58 E-value=1.1e-14 Score=98.04 Aligned_cols=82 Identities=32% Similarity=0.532 Sum_probs=71.6
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCC--CCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||++++.+|..+..|+..+..... ++|+++|+||+|+.+ +.+..+ ...++..++++++++||++|.||+++|.+|
T Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 175 (187)
T 2a9k_A 96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL 175 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 6899999999999999999887653 899999999999975 455544 677888889999999999999999999999
Q ss_pred HHHHhc
Q 032950 77 ARKLAG 82 (130)
Q Consensus 77 ~~~i~~ 82 (130)
.+.+..
T Consensus 176 ~~~i~~ 181 (187)
T 2a9k_A 176 MREIRA 181 (187)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 46
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.58 E-value=1.2e-14 Score=96.38 Aligned_cols=81 Identities=25% Similarity=0.509 Sum_probs=70.6
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh-CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|..+..|+..+... .+.+|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.|++++|..|.
T Consensus 85 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~ 164 (170)
T 1z0j_A 85 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS 164 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence 68999999999999999998876 46899999999999975 455544 6678888899999999999999999999999
Q ss_pred HHHh
Q 032950 78 RKLA 81 (130)
Q Consensus 78 ~~i~ 81 (130)
+.+.
T Consensus 165 ~~i~ 168 (170)
T 1z0j_A 165 RRIP 168 (170)
T ss_dssp HHCC
T ss_pred HHHh
Confidence 8764
No 47
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.58 E-value=1.3e-14 Score=99.44 Aligned_cols=82 Identities=28% Similarity=0.472 Sum_probs=69.6
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCC-------CcccCHH-HHHHHHhcCCcEEEeccCCCCChHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK-------NRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEK 71 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~-------~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~ 71 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+. .+.+..+ +..++...+++++++||++|.||++
T Consensus 107 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~e 186 (199)
T 2p5s_A 107 LYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVE 186 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHH
T ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHH
Confidence 689999999999999999887764 589999999999985 2445544 6778888899999999999999999
Q ss_pred HHHHHHHHHhc
Q 032950 72 PFLYLARKLAG 82 (130)
Q Consensus 72 lf~~l~~~i~~ 82 (130)
+|.+|++.+.+
T Consensus 187 l~~~l~~~i~~ 197 (199)
T 2p5s_A 187 AVLHLAREVKK 197 (199)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999998864
No 48
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.57 E-value=4.8e-15 Score=101.81 Aligned_cols=86 Identities=23% Similarity=0.328 Sum_probs=71.6
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+... +..++..++++||++||++|.||+++|..|
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 181 (201)
T 3oes_A 102 VYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKV 181 (201)
T ss_dssp EEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHH
Confidence 689999999999999999887753 4799999999999875 555544 678888899999999999999999999999
Q ss_pred HHHHhcCCCC
Q 032950 77 ARKLAGDPNL 86 (130)
Q Consensus 77 ~~~i~~~~~~ 86 (130)
++.+.+....
T Consensus 182 ~~~i~~~~~~ 191 (201)
T 3oes_A 182 IQEIARVENS 191 (201)
T ss_dssp HHHHHHC---
T ss_pred HHHHHhhhhh
Confidence 9998776543
No 49
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=9.8e-15 Score=99.77 Aligned_cols=83 Identities=27% Similarity=0.431 Sum_probs=72.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCC-ChHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNY-NFEKPFLY 75 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~-~v~~lf~~ 75 (130)
|||++++++|+.+..|+..+.... .++|+++|+||+|+.+ +.++.+ +..++..+++++|++||++|. ||+++|.+
T Consensus 105 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~ 184 (196)
T 2atv_A 105 VYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYE 184 (196)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHH
Confidence 699999999999999999888753 5899999999999976 556554 677888889999999999999 99999999
Q ss_pred HHHHHhcC
Q 032950 76 LARKLAGD 83 (130)
Q Consensus 76 l~~~i~~~ 83 (130)
|++.+.+.
T Consensus 185 l~~~i~~~ 192 (196)
T 2atv_A 185 LCREVRRR 192 (196)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99988653
No 50
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.2e-14 Score=101.53 Aligned_cols=86 Identities=27% Similarity=0.455 Sum_probs=70.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ +..++...+++++++||++|.||+++|.+|+
T Consensus 92 V~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 171 (223)
T 3cpj_B 92 VYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELI 171 (223)
T ss_dssp EEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 689999999999999999988764 5899999999999975 555544 6778888899999999999999999999999
Q ss_pred HHHhcCCCC
Q 032950 78 RKLAGDPNL 86 (130)
Q Consensus 78 ~~i~~~~~~ 86 (130)
+.+.+....
T Consensus 172 ~~i~~~~~~ 180 (223)
T 3cpj_B 172 NTIYQKVSK 180 (223)
T ss_dssp HHHTTCC--
T ss_pred HHHHHHhhh
Confidence 998876544
No 51
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.57 E-value=7e-15 Score=99.20 Aligned_cols=84 Identities=35% Similarity=0.589 Sum_probs=72.8
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+... ...++...+++++++||++|.||+++|..|+
T Consensus 89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 168 (186)
T 2bme_A 89 VYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCA 168 (186)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence 689999999999999999887764 6899999999999965 555544 6778888899999999999999999999999
Q ss_pred HHHhcCC
Q 032950 78 RKLAGDP 84 (130)
Q Consensus 78 ~~i~~~~ 84 (130)
+.+.+..
T Consensus 169 ~~~~~~~ 175 (186)
T 2bme_A 169 RKILNKI 175 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9887643
No 52
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=101.21 Aligned_cols=84 Identities=25% Similarity=0.427 Sum_probs=71.7
Q ss_pred CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCc-------------ccCHH-HHHHHHhcCC-cEEEeccC
Q 032950 1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKKNL-QYYEISAK 64 (130)
Q Consensus 1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~-------------~v~~~-~~~~~~~~~~-~~~e~Sak 64 (130)
|||++++.+|..+. .|+..+.....++|+++|+||+|+... .++.+ +..+++..++ +++++||+
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 191 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR 191 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCC
Confidence 68999999999997 799999887789999999999999652 34443 6678888887 89999999
Q ss_pred CCCChHHHHHHHHHHHhcCC
Q 032950 65 SNYNFEKPFLYLARKLAGDP 84 (130)
Q Consensus 65 ~~~~v~~lf~~l~~~i~~~~ 84 (130)
+|.||+++|..|++.+....
T Consensus 192 ~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 192 LHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999887543
No 53
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.57 E-value=1.6e-14 Score=99.27 Aligned_cols=83 Identities=34% Similarity=0.599 Sum_probs=72.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.++.. ...++...+++++++||++|.||+++|.+|+
T Consensus 104 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 183 (200)
T 2o52_A 104 VYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCA 183 (200)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 689999999999999999887764 5899999999999965 455544 6778888899999999999999999999999
Q ss_pred HHHhcC
Q 032950 78 RKLAGD 83 (130)
Q Consensus 78 ~~i~~~ 83 (130)
+.+...
T Consensus 184 ~~i~~~ 189 (200)
T 2o52_A 184 RTILNK 189 (200)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 54
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.57 E-value=1.3e-14 Score=98.99 Aligned_cols=83 Identities=27% Similarity=0.599 Sum_probs=71.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhc-CCcEEEeccCCCCChHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~-~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||++++.+|+.+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++... +++++++||++|.||+++|..|
T Consensus 105 V~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 184 (192)
T 2il1_A 105 VYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 184 (192)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHH
Confidence 689999999999999998888765 4899999999999975 555544 66777774 7899999999999999999999
Q ss_pred HHHHhcC
Q 032950 77 ARKLAGD 83 (130)
Q Consensus 77 ~~~i~~~ 83 (130)
++.+.++
T Consensus 185 ~~~i~~~ 191 (192)
T 2il1_A 185 VDDILKK 191 (192)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9988653
No 55
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.57 E-value=2.2e-14 Score=98.67 Aligned_cols=85 Identities=28% Similarity=0.510 Sum_probs=73.6
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++...++++|++||++|.||+++|..|.
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 166 (206)
T 2bcg_Y 87 VYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA 166 (206)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 689999999999999999988764 5799999999999976 455554 6778888899999999999999999999999
Q ss_pred HHHhcCCC
Q 032950 78 RKLAGDPN 85 (130)
Q Consensus 78 ~~i~~~~~ 85 (130)
+.+.+...
T Consensus 167 ~~i~~~~~ 174 (206)
T 2bcg_Y 167 RQIKESMS 174 (206)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHh
Confidence 98876543
No 56
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.57 E-value=9.4e-15 Score=98.34 Aligned_cols=84 Identities=23% Similarity=0.469 Sum_probs=71.5
Q ss_pred CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcCC-cEEEeccC
Q 032950 1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKNL-QYYEISAK 64 (130)
Q Consensus 1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~~-~~~e~Sak 64 (130)
|||++++.+|..+. .|+..+....+++|+++|+||+|+.+ +.+..+ +..++...+. +++++||+
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 162 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 162 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCC
Confidence 68999999999997 69998888777999999999999864 234443 5678888886 89999999
Q ss_pred CCCChHHHHHHHHHHHhcCC
Q 032950 65 SNYNFEKPFLYLARKLAGDP 84 (130)
Q Consensus 65 ~~~~v~~lf~~l~~~i~~~~ 84 (130)
+|.||+++|..|.+.+....
T Consensus 163 ~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 163 TQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp TCTTHHHHHHHHHHHHSCCC
T ss_pred CccCHHHHHHHHHHHHhccc
Confidence 99999999999999987554
No 57
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.57 E-value=1.2e-14 Score=97.22 Aligned_cols=84 Identities=30% Similarity=0.531 Sum_probs=71.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||++++.+|..+..|+..+.+. ..++|+++|+||+|+.+ +.+... ...++...+++++++||++|.||+++|.+|
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 166 (181)
T 2fn4_A 87 VFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQL 166 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 68999999999999999888554 25899999999999976 555544 667888889999999999999999999999
Q ss_pred HHHHhcCC
Q 032950 77 ARKLAGDP 84 (130)
Q Consensus 77 ~~~i~~~~ 84 (130)
.+.+.+..
T Consensus 167 ~~~~~~~~ 174 (181)
T 2fn4_A 167 VRAVRKYQ 174 (181)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99886543
No 58
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.56 E-value=2.5e-14 Score=96.64 Aligned_cols=83 Identities=33% Similarity=0.520 Sum_probs=72.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.||+++|..|
T Consensus 100 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 179 (195)
T 3bc1_A 100 LFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEML 179 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence 689999999999999999988775 5899999999999975 455544 677888889999999999999999999999
Q ss_pred HHHHhcC
Q 032950 77 ARKLAGD 83 (130)
Q Consensus 77 ~~~i~~~ 83 (130)
.+.+.++
T Consensus 180 ~~~~~~~ 186 (195)
T 3bc1_A 180 LDLIMKR 186 (195)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987653
No 59
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.56 E-value=5.7e-15 Score=99.23 Aligned_cols=82 Identities=27% Similarity=0.464 Sum_probs=69.8
Q ss_pred CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCC-cc----------cCHH-HHHHHHhcCC-cEEEeccCCC
Q 032950 1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-RQ----------VKAK-QVTFHRKKNL-QYYEISAKSN 66 (130)
Q Consensus 1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~-~~----------v~~~-~~~~~~~~~~-~~~e~Sak~~ 66 (130)
|||++++.+|..+. .|+..+.....++|+++|+||+|+.+ +. +..+ +..++..++. +|+++||++|
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQ 165 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCC
Confidence 68999999999997 69999988777999999999999865 22 2333 6678888886 8999999999
Q ss_pred CChHHHHHHHHHHHhc
Q 032950 67 YNFEKPFLYLARKLAG 82 (130)
Q Consensus 67 ~~v~~lf~~l~~~i~~ 82 (130)
.||+++|..|++.+.+
T Consensus 166 ~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 166 ENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp TTHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999998753
No 60
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.56 E-value=5.1e-15 Score=102.55 Aligned_cols=82 Identities=22% Similarity=0.367 Sum_probs=70.5
Q ss_pred CeecCcHHHHHhH-HHHHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcC-CcEEEeccC
Q 032950 1 MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKN-LQYYEISAK 64 (130)
Q Consensus 1 V~d~~~~~s~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~-~~~~e~Sak 64 (130)
|||++++.+|..+ ..|+..+.....++|+++||||+|+.+ +.++.+ +..++.+++ ..|++|||+
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 185 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 185 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeec
Confidence 6999999999999 789999988778999999999999963 345544 678888877 689999999
Q ss_pred -CCCChHHHHHHHHHHHhc
Q 032950 65 -SNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 65 -~~~~v~~lf~~l~~~i~~ 82 (130)
+|.||+++|..|++.+++
T Consensus 186 ~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 186 QSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhh
Confidence 689999999999998764
No 61
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.56 E-value=3.2e-14 Score=96.64 Aligned_cols=81 Identities=27% Similarity=0.403 Sum_probs=70.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
|||++++.+|..+..|+..+..... +|+++|+||+|+..+.+..+ ...++.+.+++++++||++|.||+++|.+|++.
T Consensus 123 v~D~~~~~s~~~~~~~~~~i~~~~~-~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 201 (208)
T 3clv_A 123 VFDISNSNTLDRAKTWVNQLKISSN-YIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEE 201 (208)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSC-CEEEEEEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhhCC-CcEEEEEECCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Confidence 6899999999999999998887654 99999999999544566544 678888899999999999999999999999988
Q ss_pred Hhc
Q 032950 80 LAG 82 (130)
Q Consensus 80 i~~ 82 (130)
+.+
T Consensus 202 ~~~ 204 (208)
T 3clv_A 202 IYK 204 (208)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 62
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=9.2e-15 Score=99.72 Aligned_cols=83 Identities=27% Similarity=0.433 Sum_probs=71.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++...+++++++||++|.||+++|..|.
T Consensus 102 V~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 181 (192)
T 2fg5_A 102 VYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGIS 181 (192)
T ss_dssp EEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence 689999999999999999988775 5899999999999975 555544 6788888899999999999999999999999
Q ss_pred HHHhcC
Q 032950 78 RKLAGD 83 (130)
Q Consensus 78 ~~i~~~ 83 (130)
+.+.+.
T Consensus 182 ~~i~~~ 187 (192)
T 2fg5_A 182 RQIPPL 187 (192)
T ss_dssp HTCC--
T ss_pred HHHHhh
Confidence 877543
No 63
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.56 E-value=2.3e-14 Score=97.16 Aligned_cols=83 Identities=25% Similarity=0.499 Sum_probs=72.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+..+.+..+ ...++..++++++++||++|.|++++|.+|+
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 178 (190)
T 3con_A 99 VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLV 178 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 689999999999999999887764 4899999999999977555544 6788888899999999999999999999999
Q ss_pred HHHhcC
Q 032950 78 RKLAGD 83 (130)
Q Consensus 78 ~~i~~~ 83 (130)
+.+.+.
T Consensus 179 ~~~~~~ 184 (190)
T 3con_A 179 REIRQY 184 (190)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988653
No 64
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.56 E-value=1.2e-14 Score=96.29 Aligned_cols=81 Identities=30% Similarity=0.527 Sum_probs=69.6
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC----cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN----RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFL 74 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~----~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~ 74 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.. +.+... ...++...+++++++||++|.||+++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 689999999999999999888764 6899999999999864 345544 6678888899999999999999999999
Q ss_pred HHHHHHh
Q 032950 75 YLARKLA 81 (130)
Q Consensus 75 ~l~~~i~ 81 (130)
+|.+.+.
T Consensus 162 ~l~~~i~ 168 (170)
T 1ek0_A 162 GIGEKIP 168 (170)
T ss_dssp HHHTTSC
T ss_pred HHHHHHh
Confidence 9987664
No 65
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.55 E-value=2.8e-14 Score=98.26 Aligned_cols=83 Identities=27% Similarity=0.499 Sum_probs=72.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+..+.+..+ ...++..+++++|++||++|.||+++|..|.+
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 178 (213)
T 3cph_A 99 VYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 178 (213)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 689999999999999999888765 4799999999999966666554 66788888999999999999999999999999
Q ss_pred HHhcC
Q 032950 79 KLAGD 83 (130)
Q Consensus 79 ~i~~~ 83 (130)
.+.+.
T Consensus 179 ~~~~~ 183 (213)
T 3cph_A 179 LIQEK 183 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88664
No 66
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.55 E-value=1.6e-14 Score=98.94 Aligned_cols=82 Identities=23% Similarity=0.453 Sum_probs=62.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCC----CCcEEEEecCCCCCC--cccCHH-HHHHHHhcCCcEEEeccCC-CCChHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCE----NIPIVLCGNKVDVKN--RQVKAK-QVTFHRKKNLQYYEISAKS-NYNFEKP 72 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~----~~piilv~NK~Dl~~--~~v~~~-~~~~~~~~~~~~~e~Sak~-~~~v~~l 72 (130)
|||++++.+|..+..|+..+..... ++|+++|+||+|+.+ +.++.+ +..++..++++++++||++ |.||+++
T Consensus 103 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l 182 (208)
T 2yc2_C 103 VFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAP 182 (208)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHH
Confidence 6899999999999999999988754 899999999999975 455544 7788888999999999999 9999999
Q ss_pred HHHHHHHHhc
Q 032950 73 FLYLARKLAG 82 (130)
Q Consensus 73 f~~l~~~i~~ 82 (130)
|.+|++.+.+
T Consensus 183 ~~~i~~~~~~ 192 (208)
T 2yc2_C 183 FLSIATTFYR 192 (208)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998763
No 67
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.55 E-value=2e-14 Score=97.60 Aligned_cols=81 Identities=30% Similarity=0.543 Sum_probs=68.1
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCC---CChHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSN---YNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~---~~v~~lf 73 (130)
|||++++.||..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++...+++++++||++| .||+++|
T Consensus 100 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~ 179 (189)
T 1z06_A 100 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIF 179 (189)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHH
Confidence 689999999999999999988763 6899999999999975 455554 67888888999999999999 9999999
Q ss_pred HHHHHHHh
Q 032950 74 LYLARKLA 81 (130)
Q Consensus 74 ~~l~~~i~ 81 (130)
.+|++.+.
T Consensus 180 ~~l~~~i~ 187 (189)
T 1z06_A 180 MTLAHKLK 187 (189)
T ss_dssp HHHC----
T ss_pred HHHHHHHh
Confidence 99988764
No 68
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.55 E-value=3.1e-14 Score=97.82 Aligned_cols=82 Identities=24% Similarity=0.462 Sum_probs=70.0
Q ss_pred CeecCcHHHHHhH-HHHHHHHHHhCCCCcEEEEecCCCCCCc-------------ccCHH-HHHHHHhcCC-cEEEeccC
Q 032950 1 MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKKNL-QYYEISAK 64 (130)
Q Consensus 1 V~d~~~~~s~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~-------------~v~~~-~~~~~~~~~~-~~~e~Sak 64 (130)
|||++++.+|..+ ..|+..+....+++|+++|+||+|+.+. .+..+ +..++...+. +++++||+
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 182 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCC
Confidence 6899999999999 6799988887779999999999998652 24443 6678888887 89999999
Q ss_pred CCCChHHHHHHHHHHHhc
Q 032950 65 SNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 65 ~~~~v~~lf~~l~~~i~~ 82 (130)
+|.||+++|..|++.+.+
T Consensus 183 ~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 183 TKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999988753
No 69
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=1.7e-14 Score=98.28 Aligned_cols=83 Identities=27% Similarity=0.416 Sum_probs=71.1
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC---CCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.++.+... ...++..+++++|++||++|.||+++|.+|
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 165 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQEL 165 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Confidence 689999999999999887776653 4789999999999987666554 667888889999999999999999999999
Q ss_pred HHHHhcC
Q 032950 77 ARKLAGD 83 (130)
Q Consensus 77 ~~~i~~~ 83 (130)
++.+...
T Consensus 166 ~~~~~~~ 172 (199)
T 2gf0_A 166 LTLETRR 172 (199)
T ss_dssp HHHCSSS
T ss_pred HHHHhhh
Confidence 9987654
No 70
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.55 E-value=1.5e-14 Score=95.42 Aligned_cols=82 Identities=23% Similarity=0.462 Sum_probs=70.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||++++.+|+.+..|...+.... .++|+++|+||+|+.+ +.+... ...++...+++++++||++|.|++++|..|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 689999999999999998887764 4899999999999865 455544 667888889999999999999999999999
Q ss_pred HHHHhc
Q 032950 77 ARKLAG 82 (130)
Q Consensus 77 ~~~i~~ 82 (130)
++.+.+
T Consensus 161 ~~~~~~ 166 (167)
T 1kao_A 161 VRQMNY 166 (167)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 987753
No 71
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.55 E-value=4.3e-14 Score=94.62 Aligned_cols=82 Identities=26% Similarity=0.496 Sum_probs=68.8
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-----CCCcEEEEecCCCCCC--cccCHH-HHHHHH-hcCCcEEEeccCCCCChHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN--RQVKAK-QVTFHR-KKNLQYYEISAKSNYNFEK 71 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-----~~~piilv~NK~Dl~~--~~v~~~-~~~~~~-~~~~~~~e~Sak~~~~v~~ 71 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.. +.+... ...++. ..+.+++++||++|.||++
T Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 167 (182)
T 1ky3_A 88 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT 167 (182)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHH
Confidence 689999999999999999887653 5899999999999954 344444 567776 4568899999999999999
Q ss_pred HHHHHHHHHhc
Q 032950 72 PFLYLARKLAG 82 (130)
Q Consensus 72 lf~~l~~~i~~ 82 (130)
+|.+|++.+.+
T Consensus 168 l~~~l~~~~~~ 178 (182)
T 1ky3_A 168 AFEEIARSALQ 178 (182)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 72
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.54 E-value=2.9e-14 Score=97.80 Aligned_cols=83 Identities=40% Similarity=0.653 Sum_probs=70.6
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-----CCCcEEEEecCCCCCCcccCHH-HHHHHH-hcCCcEEEeccCCCCChHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAK-QVTFHR-KKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-----~~~piilv~NK~Dl~~~~v~~~-~~~~~~-~~~~~~~e~Sak~~~~v~~lf 73 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.++.+..+ ...++. ..++++|++||++|.||+++|
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 166 (207)
T 1vg8_A 87 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166 (207)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHH
Confidence 689999999999999999887653 4789999999999986555544 566766 567899999999999999999
Q ss_pred HHHHHHHhcC
Q 032950 74 LYLARKLAGD 83 (130)
Q Consensus 74 ~~l~~~i~~~ 83 (130)
..|++.+.+.
T Consensus 167 ~~l~~~~~~~ 176 (207)
T 1vg8_A 167 QTIARNALKQ 176 (207)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988754
No 73
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.54 E-value=1.3e-14 Score=100.21 Aligned_cols=85 Identities=26% Similarity=0.499 Sum_probs=71.4
Q ss_pred CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCc-c--------cCHH-HHHHHHhcCC-cEEEeccCCCCC
Q 032950 1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-Q--------VKAK-QVTFHRKKNL-QYYEISAKSNYN 68 (130)
Q Consensus 1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~-~--------v~~~-~~~~~~~~~~-~~~e~Sak~~~~ 68 (130)
|||++++.+|..+. .|+..+....+++|+++|+||+|+.+. . +..+ +..++..++. +||++||++|.|
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~g 166 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQN 166 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCC
Confidence 68999999999997 799999887779999999999998652 2 2333 6678888885 899999999999
Q ss_pred hHHHHHHHHHHHhcCCC
Q 032950 69 FEKPFLYLARKLAGDPN 85 (130)
Q Consensus 69 v~~lf~~l~~~i~~~~~ 85 (130)
|+++|..|++.+.....
T Consensus 167 i~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 167 VKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp HHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 99999999999886543
No 74
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.54 E-value=3.5e-14 Score=96.61 Aligned_cols=83 Identities=29% Similarity=0.485 Sum_probs=71.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+... ...++...+++++++||++|.||+++|..|+
T Consensus 104 v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 183 (193)
T 2oil_A 104 VFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVL 183 (193)
T ss_dssp EEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 689999999999999999887764 5899999999999975 455544 6778888899999999999999999999999
Q ss_pred HHHhcC
Q 032950 78 RKLAGD 83 (130)
Q Consensus 78 ~~i~~~ 83 (130)
+.+.++
T Consensus 184 ~~i~~~ 189 (193)
T 2oil_A 184 KEIFAK 189 (193)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987653
No 75
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.54 E-value=1.8e-14 Score=99.84 Aligned_cols=83 Identities=34% Similarity=0.505 Sum_probs=71.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+... ...++..+++++|++||++|.||+++|.+|
T Consensus 114 V~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 193 (217)
T 2f7s_A 114 MFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL 193 (217)
T ss_dssp EEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHH
Confidence 689999999999999998876654 5899999999999976 455544 678888889999999999999999999999
Q ss_pred HHHHhcC
Q 032950 77 ARKLAGD 83 (130)
Q Consensus 77 ~~~i~~~ 83 (130)
++.+.+.
T Consensus 194 ~~~i~~~ 200 (217)
T 2f7s_A 194 LDLIMKR 200 (217)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988654
No 76
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=5e-14 Score=97.16 Aligned_cols=83 Identities=24% Similarity=0.430 Sum_probs=70.6
Q ss_pred CeecCcHHHHHhH-HHHHHHHHHhCCCCcEEEEecCCCCCCc-------------ccCHH-HHHHHHhcCC-cEEEeccC
Q 032950 1 MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKKNL-QYYEISAK 64 (130)
Q Consensus 1 V~d~~~~~s~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~-------------~v~~~-~~~~~~~~~~-~~~e~Sak 64 (130)
|||++++.+|..+ ..|+..+....+++|+++|+||+|+.+. .+..+ +..++...+. .++++||+
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 182 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 182 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCC
Confidence 6899999999999 6799988887789999999999998642 24443 5677878887 89999999
Q ss_pred CCCChHHHHHHHHHHHhcC
Q 032950 65 SNYNFEKPFLYLARKLAGD 83 (130)
Q Consensus 65 ~~~~v~~lf~~l~~~i~~~ 83 (130)
+|.||+++|..|++.+...
T Consensus 183 ~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 183 TKEGVREVFETATRAALQK 201 (207)
T ss_dssp TCTTHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 77
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.52 E-value=2.5e-14 Score=94.86 Aligned_cols=82 Identities=28% Similarity=0.435 Sum_probs=68.8
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC---CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLY 75 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~ 75 (130)
|||++++.+|+.+..|+..+.... .++|+++|+||+|+.+ +.+... ...++..++++++++||++|.||+++|.+
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 689999999999999988877653 5899999999999875 455544 66778888899999999999999999999
Q ss_pred HHHHHhc
Q 032950 76 LARKLAG 82 (130)
Q Consensus 76 l~~~i~~ 82 (130)
|.+.+.+
T Consensus 161 l~~~~~~ 167 (172)
T 2erx_A 161 LLNLEKR 167 (172)
T ss_dssp HHHTCCS
T ss_pred HHHHHhh
Confidence 9886643
No 78
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.52 E-value=3.6e-14 Score=94.81 Aligned_cols=82 Identities=29% Similarity=0.514 Sum_probs=69.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+... ...++...+++++++||++|.|++++|..|.
T Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 172 (179)
T 2y8e_A 93 VYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 689999999999999999887764 5899999999999875 455544 6677888899999999999999999999998
Q ss_pred HHHhc
Q 032950 78 RKLAG 82 (130)
Q Consensus 78 ~~i~~ 82 (130)
+.+.+
T Consensus 173 ~~~~~ 177 (179)
T 2y8e_A 173 AALPG 177 (179)
T ss_dssp HTCC-
T ss_pred HHHhh
Confidence 86643
No 79
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.50 E-value=3.9e-15 Score=102.13 Aligned_cols=83 Identities=29% Similarity=0.525 Sum_probs=64.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|+.+..|+..+.... .++|+++|+||+|+.+ +.+... ...++..++++++++||++|.||+++|.+|+
T Consensus 112 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~ 191 (199)
T 3l0i_B 112 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 191 (199)
T ss_dssp CC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 799999999999999999887764 4899999999999975 444433 6678888899999999999999999999998
Q ss_pred HHHhcC
Q 032950 78 RKLAGD 83 (130)
Q Consensus 78 ~~i~~~ 83 (130)
+.+.++
T Consensus 192 ~~l~~~ 197 (199)
T 3l0i_B 192 AEIKKR 197 (199)
T ss_dssp TTTTTT
T ss_pred HHHHHh
Confidence 877543
No 80
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.50 E-value=3.3e-14 Score=98.05 Aligned_cols=80 Identities=23% Similarity=0.483 Sum_probs=67.9
Q ss_pred CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCcc-------------cCHH-HHHHHHhcCC-cEEEeccC
Q 032950 1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VKAK-QVTFHRKKNL-QYYEISAK 64 (130)
Q Consensus 1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~~-------------v~~~-~~~~~~~~~~-~~~e~Sak 64 (130)
|||++++.+|..+. .|+..+.....++|+++|+||+|+.+.. +... +..++...+. +++++||+
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 187 (204)
T 4gzl_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187 (204)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCC
Confidence 68999999999997 7999988877899999999999986521 4443 5678888885 59999999
Q ss_pred CCCChHHHHHHHHHHH
Q 032950 65 SNYNFEKPFLYLARKL 80 (130)
Q Consensus 65 ~~~~v~~lf~~l~~~i 80 (130)
+|.||+++|.+|.+.+
T Consensus 188 ~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 188 TQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TCTTHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998764
No 81
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.49 E-value=4.9e-14 Score=100.80 Aligned_cols=80 Identities=29% Similarity=0.319 Sum_probs=65.4
Q ss_pred CeecCcH--HHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHHHHHHHHh-cCCcEEEeccCCCCChHHHHH
Q 032950 1 MFDVTAR--LTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQVTFHRK-KNLQYYEISAKSNYNFEKPFL 74 (130)
Q Consensus 1 V~d~~~~--~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~-~~~~~~e~Sak~~~~v~~lf~ 74 (130)
|||++++ .||+.+..|+..+... ..++|+++||||+|+.+ +.+ .+...++.. .+++++++||++|.||+++|.
T Consensus 169 V~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v-~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~ 247 (255)
T 3c5h_A 169 GIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI-RDAHTFALSKKNLQVVETSARSNVNVDLAFS 247 (255)
T ss_dssp EEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH-HHHHHHHHTSSSCCEEECBTTTTBSHHHHHH
T ss_pred EEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH-HHHHHHHHhcCCCeEEEEECCCCCCHHHHHH
Confidence 6899998 8999999999988765 26899999999999965 333 345567765 478999999999999999999
Q ss_pred HHHHHHh
Q 032950 75 YLARKLA 81 (130)
Q Consensus 75 ~l~~~i~ 81 (130)
.|++.+.
T Consensus 248 ~l~~~l~ 254 (255)
T 3c5h_A 248 TLVQLID 254 (255)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998764
No 82
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.47 E-value=8e-14 Score=95.40 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=64.1
Q ss_pred CeecCcH--HHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC--------cccCHH-HHHHHH----hcCCcEEEeccCC
Q 032950 1 MFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAK-QVTFHR----KKNLQYYEISAKS 65 (130)
Q Consensus 1 V~d~~~~--~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--------~~v~~~-~~~~~~----~~~~~~~e~Sak~ 65 (130)
|||++++ +++..+..|+..+.....++|+++||||+|+.+ +.+... +..++. ..+++|++|||++
T Consensus 102 v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 181 (196)
T 3llu_A 102 VIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD 181 (196)
T ss_dssp EEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS
T ss_pred EEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech
Confidence 6899987 788888888888766667999999999999754 223333 445666 6678899999999
Q ss_pred CCChHHHHHHHHHHH
Q 032950 66 NYNFEKPFLYLARKL 80 (130)
Q Consensus 66 ~~~v~~lf~~l~~~i 80 (130)
.||+++|..|++.+
T Consensus 182 -~~v~~~f~~l~~~l 195 (196)
T 3llu_A 182 -HSIFEAFSKVVQKL 195 (196)
T ss_dssp -THHHHHHHHHHHHT
T ss_pred -hhHHHHHHHHHHHh
Confidence 99999999999875
No 83
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.47 E-value=1.3e-13 Score=100.85 Aligned_cols=82 Identities=21% Similarity=0.439 Sum_probs=70.7
Q ss_pred CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcCC-cEEEeccC
Q 032950 1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKNL-QYYEISAK 64 (130)
Q Consensus 1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~~-~~~e~Sak 64 (130)
|||++++.+|..+. .|+..+.....++|+++|+||+|+.+ +.++.. +..++...++ ++|++||+
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 312 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 312 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCC
Confidence 69999999999997 69998888777999999999999854 234444 6678888887 89999999
Q ss_pred CCCChHHHHHHHHHHHhc
Q 032950 65 SNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 65 ~~~~v~~lf~~l~~~i~~ 82 (130)
+|.||+++|..|++.+..
T Consensus 313 ~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 313 TQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCcCHHHHHHHHHHHHhc
Confidence 999999999999998864
No 84
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.46 E-value=7.6e-14 Score=95.00 Aligned_cols=85 Identities=13% Similarity=0.200 Sum_probs=65.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC---------CCCcEEEEecCCCCCCcccCHH-HH-----HHHHhcCCcEEEeccCC
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC---------ENIPIVLCGNKVDVKNRQVKAK-QV-----TFHRKKNLQYYEISAKS 65 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~---------~~~piilv~NK~Dl~~~~v~~~-~~-----~~~~~~~~~~~e~Sak~ 65 (130)
|||+++++||..+..|+..+.... .++|+++|+||+|+.+.....+ .. .++...++.+|++||++
T Consensus 93 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 172 (199)
T 4bas_A 93 VVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLK 172 (199)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTT
T ss_pred EEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCC
Confidence 699999999999999988876541 2899999999999976321111 11 12245678899999999
Q ss_pred CCChHHHHHHHHHHHhcCCC
Q 032950 66 NYNFEKPFLYLARKLAGDPN 85 (130)
Q Consensus 66 ~~~v~~lf~~l~~~i~~~~~ 85 (130)
|.||+++|..|++.+.+...
T Consensus 173 g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 173 GTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp TBTHHHHHHHHHHHHHHHC-
T ss_pred ccCHHHHHHHHHHHHHHHhc
Confidence 99999999999998876543
No 85
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.45 E-value=1.2e-13 Score=94.83 Aligned_cols=79 Identities=16% Similarity=0.270 Sum_probs=62.8
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHH-HHHHHHh-----------------cCCcEEE
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK-QVTFHRK-----------------KNLQYYE 60 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~-~~~~~~~-----------------~~~~~~e 60 (130)
|||++++++|..+..|+..+.+. ..++|+++|+||+|+.+ .++.+ ...++.. .+.++++
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE-AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFM 177 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT-CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc-cCCHHHHHHHhCcccccccccccccccccCceEEEEE
Confidence 68999999999999999888764 35899999999999975 33433 4444432 2357999
Q ss_pred eccCCCCChHHHHHHHHHHH
Q 032950 61 ISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 61 ~Sak~~~~v~~lf~~l~~~i 80 (130)
|||++|.||+++|.+|++.+
T Consensus 178 ~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 178 CSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CBTTTTBSHHHHHHHHHTTC
T ss_pred EECCCCCCHHHHHHHHHHhc
Confidence 99999999999999997643
No 86
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.44 E-value=1.2e-13 Score=93.59 Aligned_cols=84 Identities=15% Similarity=0.269 Sum_probs=67.0
Q ss_pred CeecCcH-HHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccC----HHHHHHHHhcCCc----EEEeccCCCC-Ch
Q 032950 1 MFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVK----AKQVTFHRKKNLQ----YYEISAKSNY-NF 69 (130)
Q Consensus 1 V~d~~~~-~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~----~~~~~~~~~~~~~----~~e~Sak~~~-~v 69 (130)
|||++++ .+|..+..|+..+....+++|+++||||+|+.+ +.++ .....++..++++ |+++||++|. |+
T Consensus 86 v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~ 165 (184)
T 2zej_A 86 VYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDAL 165 (184)
T ss_dssp EEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHH
T ss_pred EEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhH
Confidence 6899997 589999999999887767899999999999975 3322 1134555566776 9999999997 99
Q ss_pred HHHHHHHHHHHhcCC
Q 032950 70 EKPFLYLARKLAGDP 84 (130)
Q Consensus 70 ~~lf~~l~~~i~~~~ 84 (130)
++++..|.+.+....
T Consensus 166 ~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 166 AKLRKTIINESLNFK 180 (184)
T ss_dssp HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhccc
Confidence 999999998887643
No 87
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.44 E-value=4.5e-14 Score=93.32 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=61.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHH-HH----HHhcCCcEEEeccCCCCChHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TF----HRKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~-~~----~~~~~~~~~e~Sak~~~~v~~lf 73 (130)
|||+++++||..+..|+..+... ..++|+++|+||+|+.+.....+.. .+ +...+++++++||++|.||+++|
T Consensus 74 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 74 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 68999999999999999887653 2589999999999996532111111 11 12234579999999999999999
Q ss_pred HHHHHHHhc
Q 032950 74 LYLARKLAG 82 (130)
Q Consensus 74 ~~l~~~i~~ 82 (130)
..|++.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999988754
No 88
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.44 E-value=3e-13 Score=91.35 Aligned_cols=83 Identities=12% Similarity=0.088 Sum_probs=64.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHHH-----HhcCCcEEEeccCCCCChHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~-----~~~~~~~~e~Sak~~~~v~~lf 73 (130)
|||++++.||..+..|+..+... ..++|+++|+||+|+.+.....+..... ...+++++++||++|.||+++|
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 171 (186)
T 1ksh_A 92 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI 171 (186)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHH
Confidence 68999999999999998887664 3589999999999997532112222221 1345679999999999999999
Q ss_pred HHHHHHHhcC
Q 032950 74 LYLARKLAGD 83 (130)
Q Consensus 74 ~~l~~~i~~~ 83 (130)
.+|.+.+.++
T Consensus 172 ~~l~~~i~~~ 181 (186)
T 1ksh_A 172 DWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhc
Confidence 9999988654
No 89
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.44 E-value=3.8e-13 Score=91.29 Aligned_cols=81 Identities=17% Similarity=0.205 Sum_probs=63.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC----CCCcEEEEecCCCCCCcccCHHHHHHHH-----hcCCcEEEeccCCCCChHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEK 71 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~----~~~piilv~NK~Dl~~~~v~~~~~~~~~-----~~~~~~~e~Sak~~~~v~~ 71 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.+.....+...++. ..+++++++||++|.||++
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 176 (190)
T 2h57_A 97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQE 176 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHH
Confidence 689999999999999998877653 5899999999999975322222333332 2356899999999999999
Q ss_pred HHHHHHHHHh
Q 032950 72 PFLYLARKLA 81 (130)
Q Consensus 72 lf~~l~~~i~ 81 (130)
+|..|.+.+.
T Consensus 177 l~~~l~~~i~ 186 (190)
T 2h57_A 177 GVDWLQDQIQ 186 (190)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 90
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=2.4e-13 Score=92.11 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=64.6
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHHH-----HhcCCcEEEeccCCCCChHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~-----~~~~~~~~e~Sak~~~~v~~lf 73 (130)
|||+++++||..+..|+..+... ..++|+++|+||+|+.+.....+..... ...+++++++||++|.||+++|
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 169 (187)
T 1zj6_A 90 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 169 (187)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHH
Confidence 68999999999999999888765 3689999999999997532112222222 2345689999999999999999
Q ss_pred HHHHHHHhcCCC
Q 032950 74 LYLARKLAGDPN 85 (130)
Q Consensus 74 ~~l~~~i~~~~~ 85 (130)
.+|++.+.....
T Consensus 170 ~~l~~~~~~~~~ 181 (187)
T 1zj6_A 170 EWMMSRLKIRLE 181 (187)
T ss_dssp HHHHHHHCC---
T ss_pred HHHHHHHHHHhh
Confidence 999998865433
No 91
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.43 E-value=1.4e-13 Score=93.94 Aligned_cols=78 Identities=17% Similarity=0.295 Sum_probs=61.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHH-HHHHHHh------------cCCcEEEeccCC
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK-QVTFHRK------------KNLQYYEISAKS 65 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~-~~~~~~~------------~~~~~~e~Sak~ 65 (130)
|||+++++||..+..|+..+.+. ..++|+++|+||+|+.+ .++.+ ..+++.. .+++++++||++
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 175 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN-AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVM 175 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT-CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTT
T ss_pred EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC-CCCHHHHHHHhCCccccccccccccceEEEEEeECCc
Confidence 68999999999999999887654 36899999999999975 33333 3333322 345799999999
Q ss_pred CCChHHHHHHHHHH
Q 032950 66 NYNFEKPFLYLARK 79 (130)
Q Consensus 66 ~~~v~~lf~~l~~~ 79 (130)
|.||+++|.+|++.
T Consensus 176 g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 176 RNGYLEAFQWLSQY 189 (190)
T ss_dssp TBSHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998753
No 92
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.42 E-value=1.3e-13 Score=91.59 Aligned_cols=83 Identities=13% Similarity=0.156 Sum_probs=63.8
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHH-HHH----HHHhcCCcEEEeccCCCCChHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVT----FHRKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~-~~~----~~~~~~~~~~e~Sak~~~~v~~lf 73 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.+.....+ ... ++...+++++++||++|.||+++|
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (171)
T 1upt_A 81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM 160 (171)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHH
Confidence 689999999999999888776542 5899999999999975321111 111 223345689999999999999999
Q ss_pred HHHHHHHhcC
Q 032950 74 LYLARKLAGD 83 (130)
Q Consensus 74 ~~l~~~i~~~ 83 (130)
.+|++.+.++
T Consensus 161 ~~l~~~i~~~ 170 (171)
T 1upt_A 161 EWLVETLKSR 170 (171)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhhc
Confidence 9999988653
No 93
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.42 E-value=2.7e-13 Score=91.71 Aligned_cols=82 Identities=13% Similarity=0.185 Sum_probs=61.1
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHH-----HHhcCCcEEEeccCCCCChHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~-----~~~~~~~~~e~Sak~~~~v~~lf 73 (130)
|||++++++|..+..|+..+... ..++|+++|+||+|+.+.....+.... +...+++++++||++|.||+++|
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 169 (181)
T 1fzq_A 90 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGM 169 (181)
T ss_dssp EEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHH
Confidence 68999999999999998877553 258999999999999753211121111 11234679999999999999999
Q ss_pred HHHHHHHhc
Q 032950 74 LYLARKLAG 82 (130)
Q Consensus 74 ~~l~~~i~~ 82 (130)
.+|++.+.+
T Consensus 170 ~~l~~~~~~ 178 (181)
T 1fzq_A 170 NWVCKNVNA 178 (181)
T ss_dssp HHHHHTC--
T ss_pred HHHHHHHHh
Confidence 999987654
No 94
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.41 E-value=1e-13 Score=94.70 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=62.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHHH-HHH----HHhcCCcEEEeccCCCCChHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQ-VTF----HRKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~~-~~~----~~~~~~~~~e~Sak~~~~v~~lf 73 (130)
|||++++++|..+..|+..+.... .++|+++|+||+|+.+.....+. ..+ +...+++++++||++|.||+++|
T Consensus 103 v~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 182 (192)
T 2b6h_A 103 VVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGL 182 (192)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHH
Confidence 689999999999999998876532 58999999999999653211111 111 12234579999999999999999
Q ss_pred HHHHHHHhc
Q 032950 74 LYLARKLAG 82 (130)
Q Consensus 74 ~~l~~~i~~ 82 (130)
.+|++.+.+
T Consensus 183 ~~l~~~i~~ 191 (192)
T 2b6h_A 183 DWLSHELSK 191 (192)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHhc
Confidence 999988753
No 95
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.12 E-value=1.8e-14 Score=99.04 Aligned_cols=80 Identities=23% Similarity=0.476 Sum_probs=66.0
Q ss_pred CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCc-------------ccCHH-HHHHHHhcCC-cEEEeccC
Q 032950 1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKKNL-QYYEISAK 64 (130)
Q Consensus 1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~-------------~v~~~-~~~~~~~~~~-~~~e~Sak 64 (130)
|||++++.+|..+. .|+..+.....++|+++|+||+|+.+. .+... ...++...++ +++++||+
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~ 187 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187 (204)
Confidence 68999999999997 799888776668999999999999652 23222 4567777776 89999999
Q ss_pred CCCChHHHHHHHHHHH
Q 032950 65 SNYNFEKPFLYLARKL 80 (130)
Q Consensus 65 ~~~~v~~lf~~l~~~i 80 (130)
+|.||+++|..|++.+
T Consensus 188 ~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 188 TQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999998765
No 96
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.39 E-value=3.3e-13 Score=91.02 Aligned_cols=79 Identities=14% Similarity=0.120 Sum_probs=60.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHHH-----HhcCCcEEEeccCCCCChHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~-----~~~~~~~~e~Sak~~~~v~~lf 73 (130)
|||++++.+|..+..|+..+... ..++|+++|+||+|+.+.....+..... ...+++++++||++|.||+++|
T Consensus 95 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 174 (181)
T 2h17_A 95 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 174 (181)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHH
Confidence 68999999999999998887664 3689999999999996532112222221 2235679999999999999999
Q ss_pred HHHHHH
Q 032950 74 LYLARK 79 (130)
Q Consensus 74 ~~l~~~ 79 (130)
.+|++.
T Consensus 175 ~~l~~~ 180 (181)
T 2h17_A 175 EWMMSR 180 (181)
T ss_dssp HHHHTC
T ss_pred HHHHhh
Confidence 998753
No 97
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.38 E-value=6.7e-13 Score=90.10 Aligned_cols=82 Identities=18% Similarity=0.295 Sum_probs=61.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHH-H----HHhcCCcEEEeccCCCCChHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-F----HRKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~-~----~~~~~~~~~e~Sak~~~~v~~lf 73 (130)
|||++++++|..+..|+..+... ..++|+++|+||+|+.+.....+... + +...++++|++||++|.||+++|
T Consensus 97 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~ 176 (188)
T 1zd9_A 97 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL 176 (188)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHH
Confidence 68999999999999998887654 26899999999999975321111111 1 11234679999999999999999
Q ss_pred HHHHHHHhc
Q 032950 74 LYLARKLAG 82 (130)
Q Consensus 74 ~~l~~~i~~ 82 (130)
.+|++.+.+
T Consensus 177 ~~l~~~~~~ 185 (188)
T 1zd9_A 177 QWLIQHSKS 185 (188)
T ss_dssp HHHHHTCC-
T ss_pred HHHHHHHHh
Confidence 999987654
No 98
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.36 E-value=8e-13 Score=88.78 Aligned_cols=82 Identities=10% Similarity=0.060 Sum_probs=62.9
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHHH-----HhcCCcEEEeccCCCCChHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~-----~~~~~~~~e~Sak~~~~v~~lf 73 (130)
|||++++.+|..+..|+..+... ..++|+++|+||+|+.+.....+..... ...+++++++||++|.||+++|
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 171 (183)
T 1moz_A 92 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGL 171 (183)
T ss_dssp EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHH
Confidence 68999999999999999887765 3689999999999996532112222222 1223579999999999999999
Q ss_pred HHHHHHHhc
Q 032950 74 LYLARKLAG 82 (130)
Q Consensus 74 ~~l~~~i~~ 82 (130)
.+|.+.+.+
T Consensus 172 ~~l~~~~~~ 180 (183)
T 1moz_A 172 DWLIDVIKE 180 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988754
No 99
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.36 E-value=3.9e-13 Score=91.09 Aligned_cols=83 Identities=14% Similarity=0.098 Sum_probs=63.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHHHH-H----HHHhcCCcEEEeccCCCCChHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-T----FHRKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~~~-~----~~~~~~~~~~e~Sak~~~~v~~lf 73 (130)
|||++++++|..+..|+..+.... .++|+++|+||+|+.+.....+.. . .+...+++++++||++|.||+++|
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (189)
T 2x77_A 96 VVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGM 175 (189)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHH
Confidence 689999999999999988776542 589999999999996532111211 1 122335679999999999999999
Q ss_pred HHHHHHHhcC
Q 032950 74 LYLARKLAGD 83 (130)
Q Consensus 74 ~~l~~~i~~~ 83 (130)
.+|.+.+.+.
T Consensus 176 ~~l~~~i~~~ 185 (189)
T 2x77_A 176 DWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999988654
No 100
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.33 E-value=2.4e-12 Score=90.04 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=61.7
Q ss_pred CeecCcHHHHHh--HHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHH----HHHHHHhcC--CcEEEeccCCCCChHH
Q 032950 1 MFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK----QVTFHRKKN--LQYYEISAKSNYNFEK 71 (130)
Q Consensus 1 V~d~~~~~s~~~--~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~----~~~~~~~~~--~~~~e~Sak~~~~v~~ 71 (130)
|||++++.+|.. ...|+..+.....++|+++|+||+|+.+ +.+... ...++...+ +++|++||++|.||++
T Consensus 115 v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 194 (228)
T 2qu8_A 115 IIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQ 194 (228)
T ss_dssp EEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHH
T ss_pred EEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHH
Confidence 689998877752 2346666655445899999999999975 444432 345666666 7899999999999999
Q ss_pred HHHHHHHHHhc
Q 032950 72 PFLYLARKLAG 82 (130)
Q Consensus 72 lf~~l~~~i~~ 82 (130)
+|..|++.+..
T Consensus 195 l~~~l~~~i~~ 205 (228)
T 2qu8_A 195 AKITACELLKN 205 (228)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 101
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.33 E-value=1e-12 Score=87.59 Aligned_cols=75 Identities=15% Similarity=0.111 Sum_probs=58.9
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
|||+++.+ ....|+..+.+ .++|+++|+||+|+.. +.+..+...++..++++++++||++|.||+++|..|++.
T Consensus 88 v~D~~~~~---~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~ 162 (165)
T 2wji_A 88 IVDATALE---RNLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIA 162 (165)
T ss_dssp EEETTCHH---HHHHHHHHHHH--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHH
T ss_pred EecCCchh---HhHHHHHHHHh--cCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 56777644 34557777665 4799999999999864 344434567788888999999999999999999999886
Q ss_pred H
Q 032950 80 L 80 (130)
Q Consensus 80 i 80 (130)
+
T Consensus 163 ~ 163 (165)
T 2wji_A 163 V 163 (165)
T ss_dssp T
T ss_pred h
Confidence 5
No 102
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.33 E-value=1.5e-12 Score=95.29 Aligned_cols=75 Identities=16% Similarity=0.135 Sum_probs=61.5
Q ss_pred CeecCcHH-HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHHHHHHhcC--CcEEEeccCCCCChHHHHHHH
Q 032950 1 MFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~-s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~--~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||++++. +|..+..|+..+.. .++|+++|+||+||.+ +.+ .+...++..++ +.+|+|||++|.||+++|..+
T Consensus 91 V~D~~~~~~s~~~l~~~l~~~~~--~~~piilv~NK~DL~~~~~v-~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l 167 (301)
T 1u0l_A 91 VVTVKMPETSTYIIDKFLVLAEK--NELETVMVINKMDLYDEDDL-RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYL 167 (301)
T ss_dssp EECSSTTCCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHH-HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEeHHHcCCchhH-HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHh
Confidence 79999987 79999999988765 5899999999999975 332 22456666666 899999999999999999877
Q ss_pred HH
Q 032950 77 AR 78 (130)
Q Consensus 77 ~~ 78 (130)
..
T Consensus 168 ~g 169 (301)
T 1u0l_A 168 KG 169 (301)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 103
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.31 E-value=3.2e-12 Score=86.21 Aligned_cols=84 Identities=17% Similarity=0.178 Sum_probs=63.2
Q ss_pred CeecCcHHHHHhH-HHHHHH--------HHHh--CCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCc-------EEEec
Q 032950 1 MFDVTARLTYKNV-PTWHRD--------LCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-------YYEIS 62 (130)
Q Consensus 1 V~d~~~~~s~~~~-~~~~~~--------~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~-------~~e~S 62 (130)
||++++..+|..+ ..|... +... ..++|+++|+||+|+.... ......++..++++ ++++|
T Consensus 86 v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S 164 (190)
T 2cxx_A 86 AVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLSEIDKVFIPIS 164 (190)
T ss_dssp EEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGGGHHHHEEECC
T ss_pred EEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhhccCCcEEEEe
Confidence 5788888899887 667653 2221 2589999999999997633 22356677777764 69999
Q ss_pred cCCCCChHHHHHHHHHHHhcCCC
Q 032950 63 AKSNYNFEKPFLYLARKLAGDPN 85 (130)
Q Consensus 63 ak~~~~v~~lf~~l~~~i~~~~~ 85 (130)
|++|.||+++|..|++.+.+...
T Consensus 165 a~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 165 AKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp TTTCTTHHHHHHHHHHHHHHC--
T ss_pred cCCCCCHHHHHHHHHHhcchhhc
Confidence 99999999999999998876543
No 104
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.29 E-value=2.7e-11 Score=82.86 Aligned_cols=83 Identities=34% Similarity=0.561 Sum_probs=70.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||+++..+|..+..|+..+.... .+.|+++|+||+|+.+ +.+... +..++.+.++.++++||+++.|++++|..|.
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL 163 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 589999999999999998877654 5789999999999975 444444 6788888889999999999999999999999
Q ss_pred HHHhcC
Q 032950 78 RKLAGD 83 (130)
Q Consensus 78 ~~i~~~ 83 (130)
+.+.+.
T Consensus 164 ~~~~~~ 169 (199)
T 2f9l_A 164 TEIYRI 169 (199)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988654
No 105
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.28 E-value=1.1e-12 Score=97.22 Aligned_cols=81 Identities=17% Similarity=0.164 Sum_probs=60.7
Q ss_pred CeecCcH--HHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC--------cccCHH-HHHHHHh----cCCcEEEeccCC
Q 032950 1 MFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAK-QVTFHRK----KNLQYYEISAKS 65 (130)
Q Consensus 1 V~d~~~~--~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--------~~v~~~-~~~~~~~----~~~~~~e~Sak~ 65 (130)
|||++++ +++..+..|+..+....+++|+++||||+|+.. |.+..+ +.+++++ +++.||+|||++
T Consensus 79 V~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd 158 (331)
T 3r7w_B 79 VIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD 158 (331)
T ss_dssp ECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS
T ss_pred EEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC
Confidence 6899987 444444555666656667999999999999975 234443 4566664 578899999998
Q ss_pred CCChHHHHHHHHHHHhc
Q 032950 66 NYNFEKPFLYLARKLAG 82 (130)
Q Consensus 66 ~~~v~~lf~~l~~~i~~ 82 (130)
.||.++|..+++.+..
T Consensus 159 -~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 159 -HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp -SHHHHHHHHHHTTSST
T ss_pred -CcHHHHHHHHHHHHHh
Confidence 5899999999987654
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.26 E-value=1.4e-12 Score=96.47 Aligned_cols=83 Identities=16% Similarity=0.143 Sum_probs=62.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHHHH-HH----HHhcCCcEEEeccCCCCChHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-TF----HRKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~~~-~~----~~~~~~~~~e~Sak~~~~v~~lf 73 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.+.....+.. .+ +...++++|++||++|.||+++|
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~ 318 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 318 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHH
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHH
Confidence 689999999999988877765532 589999999999997532212211 11 11234579999999999999999
Q ss_pred HHHHHHHhcC
Q 032950 74 LYLARKLAGD 83 (130)
Q Consensus 74 ~~l~~~i~~~ 83 (130)
..|++.+.++
T Consensus 319 ~~l~~~l~~~ 328 (329)
T 3o47_A 319 DWLSNQLRNQ 328 (329)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHHhc
Confidence 9999988653
No 107
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.24 E-value=5e-11 Score=81.24 Aligned_cols=80 Identities=34% Similarity=0.590 Sum_probs=67.9
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||+++..+|+.+..|+..+.... .+.|+++|+||+|+.+ +.+... +..++.+.++.++++||+++.|++++|..|.
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 187 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 689999999999999998877653 4789999999999975 444444 6788888889999999999999999999998
Q ss_pred HHH
Q 032950 78 RKL 80 (130)
Q Consensus 78 ~~i 80 (130)
+.+
T Consensus 188 ~~i 190 (191)
T 1oix_A 188 TEI 190 (191)
T ss_dssp HHH
T ss_pred HHh
Confidence 865
No 108
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.22 E-value=7.4e-12 Score=84.44 Aligned_cols=77 Identities=10% Similarity=0.077 Sum_probs=61.0
Q ss_pred HHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHhcCCC
Q 032950 7 RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 85 (130)
Q Consensus 7 ~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~~~~ 85 (130)
..+++....|+..+.. .++|+++|+||+|+.. +.+......++..++++++++||++|.||+++|..|++.+.....
T Consensus 95 ~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~~ 172 (188)
T 2wjg_A 95 ATALERNLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDKKT 172 (188)
T ss_dssp GGGHHHHHHHHHHHHT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC--
T ss_pred chhHHHHHHHHHHHHh--cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhccC
Confidence 3346677778877765 5899999999999865 344444667888889999999999999999999999999876543
No 109
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.18 E-value=2.8e-11 Score=88.62 Aligned_cols=76 Identities=16% Similarity=0.123 Sum_probs=61.0
Q ss_pred CeecCcHH-HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc-cC--HHHHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032950 1 MFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VK--AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~-s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-v~--~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||++++. +|..+.+|+..+.. .++|+++|+||+|+.+.. ++ .+...++...+++++++||++|.|++++|..+
T Consensus 86 V~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l 163 (302)
T 2yv5_A 86 VETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYL 163 (302)
T ss_dssp EECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHT
T ss_pred EEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhc
Confidence 68999886 89999999987765 689999999999996532 22 22345666778999999999999999999876
Q ss_pred HH
Q 032950 77 AR 78 (130)
Q Consensus 77 ~~ 78 (130)
..
T Consensus 164 ~G 165 (302)
T 2yv5_A 164 EG 165 (302)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.17 E-value=4.8e-11 Score=92.34 Aligned_cols=85 Identities=13% Similarity=0.083 Sum_probs=61.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHHHHHH-----HHhcCCcEEEeccCCCCChHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~~~~~-----~~~~~~~~~e~Sak~~~~v~~lf 73 (130)
|||++++.+|..+..|+..+.+.. .++|+|+|+||+|+.+.....+.... +...++++|++||++|.||+++|
T Consensus 396 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 475 (497)
T 3lvq_E 396 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGL 475 (497)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHH
T ss_pred EEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHH
Confidence 799999999999999988876542 58999999999999653211111111 11223469999999999999999
Q ss_pred HHHHHHHhcCCC
Q 032950 74 LYLARKLAGDPN 85 (130)
Q Consensus 74 ~~l~~~i~~~~~ 85 (130)
.+|.+.+.+...
T Consensus 476 ~~l~~~~~~~~~ 487 (497)
T 3lvq_E 476 TWLTSNYKSKLA 487 (497)
T ss_dssp HHHHHHCC----
T ss_pred HHHHHHHHhcCC
Confidence 999998755433
No 111
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.17 E-value=3.6e-11 Score=88.12 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=63.4
Q ss_pred CeecCcHHHHHhHHHHHHH---HHHhCCCCcEEEEecCCCCCC---cc----cC-HHHHHHHHhcC---CcEEEeccCCC
Q 032950 1 MFDVTARLTYKNVPTWHRD---LCRVCENIPIVLCGNKVDVKN---RQ----VK-AKQVTFHRKKN---LQYYEISAKSN 66 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~---~~~~~~~~piilv~NK~Dl~~---~~----v~-~~~~~~~~~~~---~~~~e~Sak~~ 66 (130)
|||+++++||+.+..|... +....+++|+++||||+|+.+ +. +. .++..++..+| ++++++||++
T Consensus 87 V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~- 165 (307)
T 3r7w_A 87 VFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD- 165 (307)
T ss_dssp EEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-
T ss_pred EEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-
Confidence 6999999999999877554 444457899999999999975 22 33 23567888887 7899999999
Q ss_pred CChHHHHHHHHHHHh
Q 032950 67 YNFEKPFLYLARKLA 81 (130)
Q Consensus 67 ~~v~~lf~~l~~~i~ 81 (130)
.|+.++|..+++.+.
T Consensus 166 ~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 166 ESLYKAWSQIVCSLI 180 (307)
T ss_dssp SHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHc
Confidence 899999998887553
No 112
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.16 E-value=7.1e-11 Score=88.15 Aligned_cols=82 Identities=17% Similarity=0.238 Sum_probs=65.2
Q ss_pred CeecCcHH--HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032950 1 MFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 1 V~d~~~~~--s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
|||++++. ++.....|+..+.....+.|+++|+||+|+.+...-.....++...+++++++||++|.||+++|.+|.+
T Consensus 253 V~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~ 332 (357)
T 2e87_A 253 IFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIK 332 (357)
T ss_dssp EECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHH
T ss_pred EEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHH
Confidence 57888776 6788888998888765589999999999997522112244566677889999999999999999999998
Q ss_pred HHhc
Q 032950 79 KLAG 82 (130)
Q Consensus 79 ~i~~ 82 (130)
.+..
T Consensus 333 ~l~~ 336 (357)
T 2e87_A 333 TLRP 336 (357)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7743
No 113
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.14 E-value=1.7e-10 Score=79.42 Aligned_cols=79 Identities=19% Similarity=0.167 Sum_probs=50.7
Q ss_pred CeecCcHH-HHHhHHH-HHHHHHHh---CCCCcEEEEecCCCCCCcccCHH-H---HHH---------------------
Q 032950 1 MFDVTARL-TYKNVPT-WHRDLCRV---CENIPIVLCGNKVDVKNRQVKAK-Q---VTF--------------------- 50 (130)
Q Consensus 1 V~d~~~~~-s~~~~~~-~~~~~~~~---~~~~piilv~NK~Dl~~~~v~~~-~---~~~--------------------- 50 (130)
|||+++.. ++..+.. |...+... ..++|+++|+||+|+.+...... . ...
T Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~ 164 (214)
T 2fh5_B 85 VVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTA 164 (214)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------
T ss_pred EEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccc
Confidence 68998854 5666655 54444432 24799999999999975221111 0 000
Q ss_pred -----------HH-hc--CCcEEEeccCCC------CChHHHHHHHHHH
Q 032950 51 -----------HR-KK--NLQYYEISAKSN------YNFEKPFLYLARK 79 (130)
Q Consensus 51 -----------~~-~~--~~~~~e~Sak~~------~~v~~lf~~l~~~ 79 (130)
+. .+ ++.|++|||++| .||+++|.+|++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 165 PAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 00 11 567999999999 9999999999875
No 114
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.13 E-value=9.7e-11 Score=91.58 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=62.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
|||+++ ++.+..|+..+....++.|+|+||||+|+.+ +.+..+ ...++...+.+++++||++|.||+++|..|++
T Consensus 128 V~D~s~---~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~ 204 (535)
T 3dpu_A 128 LLDSRT---DSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKS 204 (535)
T ss_dssp EECGGG---GGGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHH
T ss_pred EEeCCC---chhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHH
Confidence 577765 4677889999988877899999999999975 555544 56677778889999999999999999999999
Q ss_pred HHhcCC
Q 032950 79 KLAGDP 84 (130)
Q Consensus 79 ~i~~~~ 84 (130)
.+....
T Consensus 205 ~~~~~~ 210 (535)
T 3dpu_A 205 AVLHPD 210 (535)
T ss_dssp HHTCTT
T ss_pred HHhccc
Confidence 887654
No 115
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.13 E-value=1.3e-12 Score=87.79 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=56.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
|||++++.+|. ...|+..+.... .++|+++|+||+|+.+... .++...+.+++++||++|.||+++|..|.+.
T Consensus 90 v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 163 (172)
T 2gj8_A 90 MVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-----GMSEVNGHALIRLSARTGEGVDVLRNHLKQS 163 (172)
T ss_dssp EEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----EEEEETTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred EEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-----hhhhccCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 68998888876 446777776654 4799999999999854211 1222346789999999999999999999987
Q ss_pred Hhc
Q 032950 80 LAG 82 (130)
Q Consensus 80 i~~ 82 (130)
+..
T Consensus 164 ~~~ 166 (172)
T 2gj8_A 164 MGF 166 (172)
T ss_dssp C--
T ss_pred hhh
Confidence 643
No 116
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.12 E-value=1.4e-10 Score=86.35 Aligned_cols=83 Identities=20% Similarity=0.363 Sum_probs=67.2
Q ss_pred CeecCc---HHHHHhHHHHHHHHHHhC---CCCcEEEEecCCCCCCcccCHHHHHHHHhcC--CcEEEeccCCCCChHHH
Q 032950 1 MFDVTA---RLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKP 72 (130)
Q Consensus 1 V~d~~~---~~s~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~--~~~~e~Sak~~~~v~~l 72 (130)
|||+++ +.+++.+..|..++..+. .++|+++|+||+|+.... .....++..++ .++|++||+++.||+++
T Consensus 243 VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~--e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL 320 (342)
T 1lnz_A 243 VIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA--ENLEAFKEKLTDDYPVFPISAVTREGLREL 320 (342)
T ss_dssp EEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--HHHHHHHHHCCSCCCBCCCSSCCSSTTHHH
T ss_pred EEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH--HHHHHHHHHhhcCCCEEEEECCCCcCHHHH
Confidence 688888 789999999999988764 489999999999986421 12345566665 68999999999999999
Q ss_pred HHHHHHHHhcCCC
Q 032950 73 FLYLARKLAGDPN 85 (130)
Q Consensus 73 f~~l~~~i~~~~~ 85 (130)
|..|.+.+.....
T Consensus 321 ~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 321 LFEVANQLENTPE 333 (342)
T ss_dssp HHHHHHHHTSCCC
T ss_pred HHHHHHHHhhCcc
Confidence 9999999876544
No 117
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.11 E-value=1.8e-11 Score=91.56 Aligned_cols=83 Identities=12% Similarity=0.117 Sum_probs=64.7
Q ss_pred CeecCc----------HHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCc----------------ccCHH-HHHHH
Q 032950 1 MFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR----------------QVKAK-QVTFH 51 (130)
Q Consensus 1 V~d~~~----------~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~----------------~v~~~-~~~~~ 51 (130)
|||+++ ..+|..+..|+..+... ..++|+||||||+|+.+. .++.+ +..++
T Consensus 223 V~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~ 302 (353)
T 1cip_A 223 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI 302 (353)
T ss_dssp EEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHH
T ss_pred EEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHH
Confidence 688888 46788888888887764 268999999999998531 23333 55666
Q ss_pred H-----------hcCCcEEEeccCCCCChHHHHHHHHHHHhcC
Q 032950 52 R-----------KKNLQYYEISAKSNYNFEKPFLYLARKLAGD 83 (130)
Q Consensus 52 ~-----------~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~~ 83 (130)
. ..++.+++|||++|.||.++|.++++.+.+.
T Consensus 303 ~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 303 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 5 3457799999999999999999999988653
No 118
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.09 E-value=2.5e-10 Score=77.00 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=52.7
Q ss_pred CeecCcH--HHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc-c--CH-HHHHHHHhcC-CcEEEeccCCCCChHHHH
Q 032950 1 MFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V--KA-KQVTFHRKKN-LQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~--~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-v--~~-~~~~~~~~~~-~~~~e~Sak~~~~v~~lf 73 (130)
|+|.++. .++..+..|+... ++|+++|+||+|+.+.. . .. ....++...+ ++++++||++|.||+++|
T Consensus 111 v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 185 (195)
T 3pqc_A 111 LVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELL 185 (195)
T ss_dssp EEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHH
T ss_pred EecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHH
Confidence 3555543 3344444555433 78999999999986422 1 11 2345555533 789999999999999999
Q ss_pred HHHHHHHhc
Q 032950 74 LYLARKLAG 82 (130)
Q Consensus 74 ~~l~~~i~~ 82 (130)
.+|.+.+.+
T Consensus 186 ~~l~~~l~~ 194 (195)
T 3pqc_A 186 DLISTLLKE 194 (195)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhhc
Confidence 999988753
No 119
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.07 E-value=3e-11 Score=90.38 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=61.2
Q ss_pred CeecC----------cHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcc---cC--------------------H
Q 032950 1 MFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQ---VK--------------------A 45 (130)
Q Consensus 1 V~d~~----------~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~---v~--------------------~ 45 (130)
|||++ +..+|..+..|+..+... ..++|++|||||+||.+.. ++ .
T Consensus 213 v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~ 292 (354)
T 2xtz_A 213 CAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIE 292 (354)
T ss_dssp EEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHH
T ss_pred EEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHH
Confidence 67887 778999999999887764 3689999999999985421 11 1
Q ss_pred HHHHHHHh----------------cCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032950 46 KQVTFHRK----------------KNLQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 46 ~~~~~~~~----------------~~~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
++..++.+ ..+.+++|||+++.||.++|..+++.+.+
T Consensus 293 ~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~ 345 (354)
T 2xtz_A 293 HAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRR 345 (354)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHH
Confidence 24445332 12346899999999999999999988764
No 120
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.07 E-value=5.5e-11 Score=77.95 Aligned_cols=74 Identities=18% Similarity=0.134 Sum_probs=50.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCC-cEEEeccCCCCChHHHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
|||++++.++ ...|+...... .++|+++|+||+|+.+.. .....++ +.++ +++++||++|.|++++|.+|++.
T Consensus 86 v~d~~~~~~~--~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~--~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 86 AVDGRAELTQ--ADYEVAEYLRR-KGKPVILVATKVDDPKHE--LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWER 159 (161)
T ss_dssp EEESSSCCCH--HHHHHHHHHHH-HTCCEEEEEECCCSGGGG--GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHH
T ss_pred EEECCCcccH--hHHHHHHHHHh-cCCCEEEEEECcccccch--HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHh
Confidence 5777764322 22222222211 478999999999996531 1233444 5676 79999999999999999999876
Q ss_pred H
Q 032950 80 L 80 (130)
Q Consensus 80 i 80 (130)
+
T Consensus 160 l 160 (161)
T 2dyk_A 160 L 160 (161)
T ss_dssp C
T ss_pred C
Confidence 4
No 121
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.07 E-value=3.4e-10 Score=76.61 Aligned_cols=76 Identities=9% Similarity=0.164 Sum_probs=53.2
Q ss_pred CeecCcHHHHHhHH--HHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHHH----HHHhcCCcEEEeccCCCCChHHHH
Q 032950 1 MFDVTARLTYKNVP--TWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVT----FHRKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~--~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~----~~~~~~~~~~e~Sak~~~~v~~lf 73 (130)
|||++++.++.... .|+. . .++|+++|+||+|+.+ +.+...... ++...+.+++++||++|.||+++|
T Consensus 112 v~d~~~~~~~~~~~~~~~~~---~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 186 (195)
T 1svi_A 112 IVDLRHAPSNDDVQMYEFLK---Y--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAW 186 (195)
T ss_dssp EEETTSCCCHHHHHHHHHHH---H--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH---H--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHH
Confidence 57888766665542 3332 2 5789999999999975 323221122 222345789999999999999999
Q ss_pred HHHHHHHh
Q 032950 74 LYLARKLA 81 (130)
Q Consensus 74 ~~l~~~i~ 81 (130)
.+|.+.+.
T Consensus 187 ~~l~~~l~ 194 (195)
T 1svi_A 187 GAIKKMIN 194 (195)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99998764
No 122
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.06 E-value=1.5e-10 Score=82.90 Aligned_cols=76 Identities=8% Similarity=0.020 Sum_probs=59.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
|||.++.++. ..|...+.. .++|+++|+||+|+.+ +.+......++..++++++++||++|.||+++|..|.+.
T Consensus 90 V~D~t~~~~~---~~~~~~l~~--~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (258)
T 3a1s_A 90 VADSVNPEQS---LYLLLEILE--MEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEY 164 (258)
T ss_dssp EEETTSCHHH---HHHHHHHHT--TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred EeCCCchhhH---HHHHHHHHh--cCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHH
Confidence 5777775543 346555554 4899999999999864 344434567888889999999999999999999999987
Q ss_pred Hh
Q 032950 80 LA 81 (130)
Q Consensus 80 i~ 81 (130)
+.
T Consensus 165 ~~ 166 (258)
T 3a1s_A 165 AQ 166 (258)
T ss_dssp HH
T ss_pred hh
Confidence 75
No 123
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.05 E-value=5.8e-10 Score=81.73 Aligned_cols=83 Identities=18% Similarity=0.177 Sum_probs=65.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCC-CcccCHH-HHHHHHhcC--CcEEEeccCCCCChHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-NRQVKAK-QVTFHRKKN--LQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~-~~~v~~~-~~~~~~~~~--~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||+++..++.....|+..+.. .++|+++|+||+|+. ++..... ...+...++ .+++++||++|.|++++|..|
T Consensus 99 VvD~~~~~~~~~~~~~~~~l~~--~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l 176 (308)
T 3iev_A 99 MIDATEGWRPRDEEIYQNFIKP--LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTI 176 (308)
T ss_dssp EEETTTBSCHHHHHHHHHHTGG--GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHH
T ss_pred EEeCCCCCCchhHHHHHHHHHh--cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHH
Confidence 5788887778877778877766 479999999999997 4443333 456666665 679999999999999999999
Q ss_pred HHHHhcCCC
Q 032950 77 ARKLAGDPN 85 (130)
Q Consensus 77 ~~~i~~~~~ 85 (130)
.+.+.....
T Consensus 177 ~~~l~~~~~ 185 (308)
T 3iev_A 177 LKYLPEGEP 185 (308)
T ss_dssp HHHSCBCCC
T ss_pred HHhCccCCC
Confidence 998875543
No 124
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.03 E-value=1.7e-10 Score=83.34 Aligned_cols=76 Identities=16% Similarity=0.113 Sum_probs=58.9
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
|||+++.+++ ..|...+.. .++|+++|+||+|+.. +.+......++..++++++++||++|.||+++|..|++.
T Consensus 87 V~D~t~~e~~---~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 161 (272)
T 3b1v_A 87 VVDATNLERN---LYLTTQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHT 161 (272)
T ss_dssp EEEGGGHHHH---HHHHHHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHS
T ss_pred EecCCchHhH---HHHHHHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 5777775543 456655554 5899999999999864 344434567788889999999999999999999999886
Q ss_pred Hh
Q 032950 80 LA 81 (130)
Q Consensus 80 i~ 81 (130)
+.
T Consensus 162 ~~ 163 (272)
T 3b1v_A 162 TT 163 (272)
T ss_dssp CT
T ss_pred Hh
Confidence 53
No 125
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.01 E-value=9.2e-11 Score=88.00 Aligned_cols=82 Identities=15% Similarity=0.119 Sum_probs=62.8
Q ss_pred CeecCc----------HHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCc-----------------ccCHH-HHHH
Q 032950 1 MFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-----------------QVKAK-QVTF 50 (130)
Q Consensus 1 V~d~~~----------~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~-----------------~v~~~-~~~~ 50 (130)
|||+++ ..+|..+..|...+... ..++|+||++||+||.+. .++.+ +..+
T Consensus 231 v~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~ 310 (362)
T 1zcb_A 231 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF 310 (362)
T ss_dssp EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred EEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHH
Confidence 688888 67999999988887764 368999999999998531 13333 4455
Q ss_pred H--------H---hcCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032950 51 H--------R---KKNLQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 51 ~--------~---~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
+ . ..++.+++|||+++.||.++|..+.+.+.+
T Consensus 311 ~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 311 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 4 1 345778999999999999999999988764
No 126
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.00 E-value=1.1e-10 Score=88.59 Aligned_cols=82 Identities=12% Similarity=0.072 Sum_probs=62.3
Q ss_pred CeecCc----------HHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cc---cC--------------------
Q 032950 1 MFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQ---VK-------------------- 44 (130)
Q Consensus 1 V~d~~~----------~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~---v~-------------------- 44 (130)
|||+++ ..+|..+..|+..+... ..++|++|||||+||.+ +. ++
T Consensus 247 V~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~ 326 (402)
T 1azs_C 247 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATP 326 (402)
T ss_dssp EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCC
T ss_pred EEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhcccccccccccccccc
Confidence 689998 88999999999988765 36899999999999854 21 21
Q ss_pred --------HHHHHHH-----Hh--------cCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032950 45 --------AKQVTFH-----RK--------KNLQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 45 --------~~~~~~~-----~~--------~~~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
..+..|+ .. .++.+++|||+++.||+++|..+...+.+
T Consensus 327 ~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 327 EPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHH
Confidence 1233342 22 24567899999999999999999887764
No 127
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.98 E-value=8.5e-11 Score=84.83 Aligned_cols=78 Identities=13% Similarity=0.154 Sum_probs=57.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
|+|.++.+++..+..|+.+. ++|+++|+||+|+.+ +.+......++..++++++++||++|.|++++|..|.+.
T Consensus 92 VvD~~~~~~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~ 166 (274)
T 3i8s_A 92 VVDASNLERNLYLTLQLLEL-----GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRY 166 (274)
T ss_dssp EEEGGGHHHHHHHHHHHHHH-----TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTC
T ss_pred EecCCChHHHHHHHHHHHhc-----CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 57787766554444444332 799999999999864 333333456777889999999999999999999998876
Q ss_pred HhcC
Q 032950 80 LAGD 83 (130)
Q Consensus 80 i~~~ 83 (130)
+...
T Consensus 167 ~~~~ 170 (274)
T 3i8s_A 167 KANE 170 (274)
T ss_dssp CCCC
T ss_pred HhcC
Confidence 6543
No 128
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.97 E-value=1.2e-10 Score=83.33 Aligned_cols=74 Identities=14% Similarity=0.064 Sum_probs=56.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
|+|.++.+++..+..|+. . .++|+++|+||+|+.. +.+......++..++++++++||++|.|++++|..|.+.
T Consensus 90 VvDas~~~~~~~l~~~l~---~--~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 90 VIDACHLERHLYLTSQLF---E--LGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp EEEGGGHHHHHHHHHHHT---T--SCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred EeeCCCchhHHHHHHHHH---H--cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 578888766655444432 2 3799999999999865 333333456777889999999999999999999999876
No 129
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.94 E-value=2.2e-09 Score=71.32 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=50.9
Q ss_pred CeecCc---HHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHh-------cC--CcEEEeccCCCCC
Q 032950 1 MFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK-------KN--LQYYEISAKSNYN 68 (130)
Q Consensus 1 V~d~~~---~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~-------~~--~~~~e~Sak~~~~ 68 (130)
|||+++ ..+++.+.. +.. .++|+++|+||+|+.+... ........+ ++ ++++++||++|.|
T Consensus 85 v~d~~~~~~~~~~~~l~~----~~~--~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 85 VVAADDGVMPQTVEAINH----AKA--ANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEETTCCCCHHHHHHHHH----HGG--GSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEECCCCCcHHHHHHHHH----HHh--CCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 577777 445543322 222 4799999999999965211 112222222 22 4799999999999
Q ss_pred hHHHHHHHHHHHhcC
Q 032950 69 FEKPFLYLARKLAGD 83 (130)
Q Consensus 69 v~~lf~~l~~~i~~~ 83 (130)
|+++|.+|++.+...
T Consensus 158 v~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 158 LDHLLEMILLVSEME 172 (178)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999999887654
No 130
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.88 E-value=1.7e-09 Score=82.63 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=54.7
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHhcC
Q 032950 14 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 83 (130)
Q Consensus 14 ~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~~ 83 (130)
..|+..+... ++|+++|+||+|+...........++..++++++++||++|.|++++|..|.+.+...
T Consensus 130 ~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 130 DDVVNLFKEM--EIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp HHHHHHHHHT--TCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred HHHHHHHHhc--CCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 5577766663 8999999999999764333335566667788999999999999999999999998665
No 131
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.87 E-value=5e-10 Score=82.97 Aligned_cols=82 Identities=16% Similarity=0.105 Sum_probs=61.0
Q ss_pred ecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCc-----------------ccCHH-HHHHH----------H
Q 032950 3 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-----------------QVKAK-QVTFH----------R 52 (130)
Q Consensus 3 d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~-----------------~v~~~-~~~~~----------~ 52 (130)
|.++..+|.....|...+... ..++|++|+|||+|+.+. .++.+ +..+. .
T Consensus 209 d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~ 288 (327)
T 3ohm_A 209 ESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDS 288 (327)
T ss_dssp SCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTT
T ss_pred ccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccc
Confidence 344667888888888777654 268999999999998542 23333 44552 2
Q ss_pred hcCCcEEEeccCCCCChHHHHHHHHHHHhcCC
Q 032950 53 KKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 84 (130)
Q Consensus 53 ~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~~~ 84 (130)
..++.+++|||+++.||+.+|..+++.|++..
T Consensus 289 ~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 289 DKIIYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp TSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 34567899999999999999999999987643
No 132
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.84 E-value=6e-09 Score=78.22 Aligned_cols=75 Identities=21% Similarity=0.227 Sum_probs=56.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-H----HHHHHhcCC---cEEEeccCCCCChHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-Q----VTFHRKKNL---QYYEISAKSNYNFEKP 72 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~----~~~~~~~~~---~~~e~Sak~~~~v~~l 72 (130)
|+|++++. ..|...+.+...+.|+++|+||+|+....+..+ . ..++.+.|+ .++.+||++|.|++++
T Consensus 76 VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L 150 (368)
T 3h2y_A 76 IVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAEL 150 (368)
T ss_dssp EEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHH
T ss_pred EEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHH
Confidence 67888753 457777777667899999999999976443222 2 233566676 7999999999999999
Q ss_pred HHHHHHHH
Q 032950 73 FLYLARKL 80 (130)
Q Consensus 73 f~~l~~~i 80 (130)
+..|.+..
T Consensus 151 ~~~l~~~~ 158 (368)
T 3h2y_A 151 ADAIEYYR 158 (368)
T ss_dssp HHHHHHHH
T ss_pred Hhhhhhhc
Confidence 99887654
No 133
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.83 E-value=4.8e-09 Score=81.21 Aligned_cols=79 Identities=9% Similarity=0.004 Sum_probs=56.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
|||++++.++..+..|...+... .++|+++|+||+|+.+.... ....+......+++++||++|.||+++|..|.+.+
T Consensus 319 VvD~s~~~s~~~~~~~~~~l~~l-~~~piIvV~NK~Dl~~~~~~-~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~ 396 (476)
T 3gee_A 319 LLDLGTERLDDELTEIRELKAAH-PAAKFLTVANKLDRAANADA-LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLV 396 (476)
T ss_dssp EEETTTCSSGGGHHHHHHHHHHC-TTSEEEEEEECTTSCTTTHH-HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred EEECCCCcchhhhHHHHHHHHhc-CCCCEEEEEECcCCCCccch-hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHH
Confidence 68888888876554444333322 37999999999999752211 12234333236799999999999999999999988
Q ss_pred h
Q 032950 81 A 81 (130)
Q Consensus 81 ~ 81 (130)
.
T Consensus 397 ~ 397 (476)
T 3gee_A 397 K 397 (476)
T ss_dssp H
T ss_pred h
Confidence 6
No 134
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.82 E-value=5.5e-09 Score=72.14 Aligned_cols=81 Identities=16% Similarity=0.026 Sum_probs=51.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCc-ccCH---HHHHHHHh-------cCCcEEEeccCCCCCh
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKA---KQVTFHRK-------KNLQYYEISAKSNYNF 69 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~v~~---~~~~~~~~-------~~~~~~e~Sak~~~~v 69 (130)
|+|.++..+. ....|+..+.. .++|+++|+||+|+... .+.. ........ .+.++|++||++|.||
T Consensus 122 v~d~~~~~~~-~~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv 198 (223)
T 4dhe_A 122 MMDARRPLTE-LDRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGL 198 (223)
T ss_dssp EEETTSCCCH-HHHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSH
T ss_pred EEeCCCCCCH-HHHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCH
Confidence 4566553221 11234444444 47899999999998752 2111 11122222 4567999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 032950 70 EKPFLYLARKLAGDP 84 (130)
Q Consensus 70 ~~lf~~l~~~i~~~~ 84 (130)
+++|..|.+.+....
T Consensus 199 ~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 199 DDAHALIESWLRPAA 213 (223)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHhcCccC
Confidence 999999999886543
No 135
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.77 E-value=6.8e-09 Score=74.48 Aligned_cols=80 Identities=19% Similarity=0.157 Sum_probs=57.1
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
|+|.++.+ ....|...+... ..+|+++|+||+|+.+ +.+......+++.++++++++||++|.|++++|..+.+.
T Consensus 88 v~D~~~~~---~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~ 163 (271)
T 3k53_A 88 IVDSTCLM---RNLFLTLELFEM-EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALM 163 (271)
T ss_dssp EEEGGGHH---HHHHHHHHHHHT-TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHH
T ss_pred EecCCcch---hhHHHHHHHHhc-CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 45666532 233344444332 2399999999999864 333333566777889999999999999999999999998
Q ss_pred HhcCC
Q 032950 80 LAGDP 84 (130)
Q Consensus 80 i~~~~ 84 (130)
+....
T Consensus 164 ~~~~~ 168 (271)
T 3k53_A 164 AEGKV 168 (271)
T ss_dssp HHTCC
T ss_pred Hhccc
Confidence 76544
No 136
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.77 E-value=1e-08 Score=78.71 Aligned_cols=80 Identities=11% Similarity=0.029 Sum_probs=54.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHH-HHHHHHhc-----CCcEEEeccCCCCChHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKK-----NLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~-----~~~~~e~Sak~~~~v~~lf 73 (130)
|+|.++..+ +....|...+.. .+.|+++|+||+|+.+ +.+..+ ..+.+.+. +.+++++||++|.||+++|
T Consensus 284 viD~~~~~~-~~~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~ 360 (456)
T 4dcu_A 284 VLDGEEGII-EQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLM 360 (456)
T ss_dssp EEETTTCCC-HHHHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHH
T ss_pred EEeCCCCcC-HHHHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHH
Confidence 456655321 222345555544 5799999999999975 333322 34444432 4789999999999999999
Q ss_pred HHHHHHHhcC
Q 032950 74 LYLARKLAGD 83 (130)
Q Consensus 74 ~~l~~~i~~~ 83 (130)
..+.+.+...
T Consensus 361 ~~i~~~~~~~ 370 (456)
T 4dcu_A 361 PAIIKASENH 370 (456)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999877543
No 137
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.75 E-value=1.3e-08 Score=77.85 Aligned_cols=79 Identities=9% Similarity=0.034 Sum_probs=57.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCH-HH-HHHHHh----cCCcEEEeccCCCCChHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKA-KQ-VTFHRK----KNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~-~~-~~~~~~----~~~~~~e~Sak~~~~v~~lf 73 (130)
|||+++..++... .|...+.. .+.|+++|+||+|+.+ +.+.. +. ..+... .+.+++++||++|.||+++|
T Consensus 264 v~D~~~~~s~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~ 340 (436)
T 2hjg_A 264 VLDGEEGIIEQDK-RIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLM 340 (436)
T ss_dssp EEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHH
T ss_pred EEcCCcCCcHHHH-HHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHH
Confidence 5788887776665 47666654 5899999999999875 33222 22 222222 35789999999999999999
Q ss_pred HHHHHHHhc
Q 032950 74 LYLARKLAG 82 (130)
Q Consensus 74 ~~l~~~i~~ 82 (130)
..+.+.+..
T Consensus 341 ~~i~~~~~~ 349 (436)
T 2hjg_A 341 PAIIKASEN 349 (436)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987764
No 138
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.71 E-value=2.7e-09 Score=79.43 Aligned_cols=82 Identities=10% Similarity=0.109 Sum_probs=60.8
Q ss_pred CeecC----------cHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCccc----------------CH-HHHHHH
Q 032950 1 MFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQV----------------KA-KQVTFH 51 (130)
Q Consensus 1 V~d~~----------~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v----------------~~-~~~~~~ 51 (130)
|||++ +..+|.....|...+... ..++|++|+|||+|+.+..+ .. ++..|+
T Consensus 191 V~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i 270 (340)
T 4fid_A 191 VTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYI 270 (340)
T ss_dssp EEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHH
T ss_pred EEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHH
Confidence 57777 677888888888877654 26899999999999854111 11 233332
Q ss_pred -Hhc--------------------------CCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032950 52 -RKK--------------------------NLQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 52 -~~~--------------------------~~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
..+ ++.+++|||+++.||..+|..+.+.|++
T Consensus 271 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 271 QQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 222 3678999999999999999999999876
No 139
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.70 E-value=2.8e-08 Score=77.06 Aligned_cols=75 Identities=19% Similarity=0.173 Sum_probs=54.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
|||++++.+++...-| +.+ .+.|+++|+||+|+.+. +..+ ...++. .+.+++++||++|.||+++|..|.+.
T Consensus 330 VvD~s~~~s~~~~~il-~~l----~~~piivV~NK~DL~~~-~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 330 VLDASSPLDEEDRKIL-ERI----KNKRYLVVINKVDVVEK-INEEEIKNKLG-TDRHMVKISALKGEGLEKLEESIYRE 402 (482)
T ss_dssp EEETTSCCCHHHHHHH-HHH----TTSSEEEEEEECSSCCC-CCHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHH-HHh----cCCCEEEEEECcccccc-cCHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6888887777654333 322 47899999999999653 3322 333332 44689999999999999999999997
Q ss_pred Hhc
Q 032950 80 LAG 82 (130)
Q Consensus 80 i~~ 82 (130)
+..
T Consensus 403 ~~~ 405 (482)
T 1xzp_A 403 TQE 405 (482)
T ss_dssp THH
T ss_pred Hhh
Confidence 653
No 140
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.65 E-value=4.1e-08 Score=77.94 Aligned_cols=79 Identities=13% Similarity=0.140 Sum_probs=59.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCC---cEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~---~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||.++..++.....|..... .++|+++|+||+|+.+........++...+++ .++++||++|.||+++|+.|.
T Consensus 101 VVDa~~gv~~qt~~~~~~~~~---~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~ 177 (599)
T 3cb4_D 101 VVDAGQGVEAQTLANCYTAME---MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLV 177 (599)
T ss_dssp EEETTTCCCTHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH---CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHh
Confidence 578877666666677765543 47899999999999753322223456666665 489999999999999999999
Q ss_pred HHHhc
Q 032950 78 RKLAG 82 (130)
Q Consensus 78 ~~i~~ 82 (130)
+.+..
T Consensus 178 ~~lp~ 182 (599)
T 3cb4_D 178 RDIPP 182 (599)
T ss_dssp HHSCC
T ss_pred hcCCC
Confidence 88764
No 141
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.62 E-value=4.9e-08 Score=77.48 Aligned_cols=79 Identities=15% Similarity=0.241 Sum_probs=59.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCC---cEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~---~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||.++..++.....|..... .++|+++|+||+|+.+........++...+++ .++++||++|.||+++|+.|+
T Consensus 103 VVDa~~gv~~qt~~~~~~a~~---~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~ 179 (600)
T 2ywe_A 103 LIDASQGIEAQTVANFWKAVE---QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIV 179 (600)
T ss_dssp EEETTTBCCHHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCCccHHHHHHHHHHHH---CCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHH
Confidence 578887666777777775443 48999999999999753322223455566665 489999999999999999999
Q ss_pred HHHhc
Q 032950 78 RKLAG 82 (130)
Q Consensus 78 ~~i~~ 82 (130)
+.+..
T Consensus 180 ~~lp~ 184 (600)
T 2ywe_A 180 NRIPP 184 (600)
T ss_dssp HHSCC
T ss_pred Hhccc
Confidence 88764
No 142
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.59 E-value=9.3e-09 Score=70.81 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=44.9
Q ss_pred CeecC-cHHHHHhHHHHHHHHHHh-----CCCCcEEEEecCCCCCC-cccC-------HHHHHHHHhcCCcEEEeccCCC
Q 032950 1 MFDVT-ARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDVKN-RQVK-------AKQVTFHRKKNLQYYEISAKSN 66 (130)
Q Consensus 1 V~d~~-~~~s~~~~~~~~~~~~~~-----~~~~piilv~NK~Dl~~-~~v~-------~~~~~~~~~~~~~~~e~Sak~~ 66 (130)
|||++ ++++|..+..|+..+... ..++|+++|+||+|+.. +.+. .+...++...+..|+++||++|
T Consensus 89 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~ 168 (218)
T 1nrj_B 89 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKIN 168 (218)
T ss_dssp EEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred EEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 68888 788999999998887654 25899999999999976 2222 1234566666778999999998
Q ss_pred CC
Q 032950 67 YN 68 (130)
Q Consensus 67 ~~ 68 (130)
.+
T Consensus 169 ~~ 170 (218)
T 1nrj_B 169 EE 170 (218)
T ss_dssp --
T ss_pred cc
Confidence 76
No 143
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.59 E-value=4.3e-08 Score=73.57 Aligned_cols=75 Identities=24% Similarity=0.281 Sum_probs=54.1
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-HH----HHHHhcCC---cEEEeccCCCCChHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QV----TFHRKKNL---QYYEISAKSNYNFEKP 72 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~~----~~~~~~~~---~~~e~Sak~~~~v~~l 72 (130)
|+|++++.+ .|..++.+...+.|+++|+||+|+.......+ .. .++.+.|+ .++.+||++|.|++++
T Consensus 78 VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L 152 (369)
T 3ec1_A 78 IVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKV 152 (369)
T ss_dssp EEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHH
T ss_pred EEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHH
Confidence 567777552 35555555556899999999999976433222 22 33556676 6899999999999999
Q ss_pred HHHHHHHH
Q 032950 73 FLYLARKL 80 (130)
Q Consensus 73 f~~l~~~i 80 (130)
+..+.+..
T Consensus 153 ~~~I~~~~ 160 (369)
T 3ec1_A 153 MEAINRYR 160 (369)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 99887765
No 144
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.57 E-value=1.8e-07 Score=71.26 Aligned_cols=84 Identities=15% Similarity=0.141 Sum_probs=62.8
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC---CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|+|++ ..++..+..|..++..+. ...|.++|+||+|+.....-.....++...+..++.+||+++.|+++++..|.
T Consensus 242 vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 242 VLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp EEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred EeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence 46776 557888888887776653 36899999999998754111123344555678899999999999999999999
Q ss_pred HHHhcCCC
Q 032950 78 RKLAGDPN 85 (130)
Q Consensus 78 ~~i~~~~~ 85 (130)
+.+.....
T Consensus 321 ~~l~~~~~ 328 (416)
T 1udx_A 321 ALVRSTPP 328 (416)
T ss_dssp HHHHTSCC
T ss_pred HHHHhccc
Confidence 99876554
No 145
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.56 E-value=1.7e-07 Score=70.26 Aligned_cols=82 Identities=17% Similarity=0.086 Sum_probs=58.7
Q ss_pred CeecCcHH--HHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCCcccCH---HHHHHHHhc---CCcEEEeccCCCCChHH
Q 032950 1 MFDVTARL--TYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA---KQVTFHRKK---NLQYYEISAKSNYNFEK 71 (130)
Q Consensus 1 V~d~~~~~--s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~~~v~~---~~~~~~~~~---~~~~~e~Sak~~~~v~~ 71 (130)
|+|++++. ++..+..|...+.... .+.|+++|+||+|+.+..... ....++... +.+++.+||++|.|+++
T Consensus 264 VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~ 343 (364)
T 2qtf_A 264 VIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLEL 343 (364)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHH
T ss_pred EEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHH
Confidence 57888776 6777777776665543 578999999999986532111 122233444 23689999999999999
Q ss_pred HHHHHHHHHhc
Q 032950 72 PFLYLARKLAG 82 (130)
Q Consensus 72 lf~~l~~~i~~ 82 (130)
++..|.+.+..
T Consensus 344 L~~~I~~~l~~ 354 (364)
T 2qtf_A 344 LRDKIYQLATQ 354 (364)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999887754
No 146
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.56 E-value=1.2e-07 Score=71.69 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=55.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc-cCH---HHHHHHHhc---CCcEEEeccCCCCChHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA---KQVTFHRKK---NLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-v~~---~~~~~~~~~---~~~~~e~Sak~~~~v~~lf 73 (130)
|+|.++..++.....|+..+... ...|+++|+||+|+.+.. ... +...++... +++++++||++|.||+++|
T Consensus 105 Vvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~ 183 (403)
T 3sjy_A 105 VVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLI 183 (403)
T ss_dssp EEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHH
T ss_pred EEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHH
Confidence 56777665566677777655443 335899999999997522 111 112233222 4679999999999999999
Q ss_pred HHHHHHHhc
Q 032950 74 LYLARKLAG 82 (130)
Q Consensus 74 ~~l~~~i~~ 82 (130)
+.|.+.+..
T Consensus 184 ~~l~~~l~~ 192 (403)
T 3sjy_A 184 EGIEEYIKT 192 (403)
T ss_dssp HHHHHHSCC
T ss_pred HHHHHhCCC
Confidence 999987653
No 147
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.54 E-value=5.7e-08 Score=74.96 Aligned_cols=76 Identities=13% Similarity=0.120 Sum_probs=52.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
|||.+++.++.. ..|+..+ ...|+++|+||+|+...........+. .+.+++++||++|.|++++|..|.+.+
T Consensus 310 VvD~s~~~~~~~-~~i~~~l----~~~piivV~NK~Dl~~~~~~~~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 310 TIDAATGWTTGD-QEIYEQV----KHRPLILVMNKIDLVEKQLITSLEYPE--NITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp EEETTTCSCHHH-HHHHHHH----TTSCEEEEEECTTSSCGGGSTTCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EeccCCCCCHHH-HHHHHhc----cCCcEEEEEECCCCCcchhhHHHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 577777654433 3455444 357999999999997522111111111 346799999999999999999999988
Q ss_pred hcC
Q 032950 81 AGD 83 (130)
Q Consensus 81 ~~~ 83 (130)
...
T Consensus 383 ~~~ 385 (462)
T 3geh_A 383 QTG 385 (462)
T ss_dssp TTS
T ss_pred hcc
Confidence 654
No 148
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.49 E-value=3.8e-08 Score=71.96 Aligned_cols=80 Identities=19% Similarity=0.167 Sum_probs=53.6
Q ss_pred CeecCcHHHHHhHHHHH-HHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhc-C-CcEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWH-RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-N-LQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~-~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~-~-~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+. ...|+ ..+.....++|+++|+||+|+.+.... ....+..+ + .+++++||++|.|++++|..|.
T Consensus 93 VvD~~~~~~~--~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~ 168 (301)
T 1wf3_A 93 VVDLRHPPTP--EDELVARALKPLVGKVPILLVGNKLDAAKYPEE--AMKAYHELLPEAEPRMLSALDERQVAELKADLL 168 (301)
T ss_dssp EEETTSCCCH--HHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH--HHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHH
T ss_pred EEECCCCCCh--HHHHHHHHHHhhcCCCCEEEEEECcccCCchHH--HHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHH
Confidence 5788765333 24554 445544457999999999998652110 12223332 3 4689999999999999999998
Q ss_pred HHHhcCC
Q 032950 78 RKLAGDP 84 (130)
Q Consensus 78 ~~i~~~~ 84 (130)
+.+....
T Consensus 169 ~~l~~~~ 175 (301)
T 1wf3_A 169 ALMPEGP 175 (301)
T ss_dssp TTCCBCC
T ss_pred HhcccCC
Confidence 8775543
No 149
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.44 E-value=4e-08 Score=73.51 Aligned_cols=81 Identities=12% Similarity=0.212 Sum_probs=48.2
Q ss_pred CeecCc-HHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCC-cccCH---HHHHHHHhcCCcEEEeccCCCCChHHHHH
Q 032950 1 MFDVTA-RLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-RQVKA---KQVTFHRKKNLQYYEISAKSNYNFEKPFL 74 (130)
Q Consensus 1 V~d~~~-~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~---~~~~~~~~~~~~~~e~Sak~~~~v~~lf~ 74 (130)
||++++ ..+|..+. .|+..+ ..++|+|+|+||+|+.. +.+.. ....++..+++++|++||++|.| ++.|.
T Consensus 150 vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~ 225 (361)
T 2qag_A 150 FYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFK 225 (361)
T ss_dssp EEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CH
T ss_pred EEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHH
Confidence 356665 44566665 354443 36899999999999875 33332 24456667789999999999999 88899
Q ss_pred HHHHHHhcCCC
Q 032950 75 YLARKLAGDPN 85 (130)
Q Consensus 75 ~l~~~i~~~~~ 85 (130)
.+.+.+.....
T Consensus 226 ~l~~~i~~~ip 236 (361)
T 2qag_A 226 EQTRLLKASIP 236 (361)
T ss_dssp HHHHHHHHTCS
T ss_pred HHHHHHHhcCC
Confidence 99888876544
No 150
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.43 E-value=1.8e-07 Score=71.44 Aligned_cols=76 Identities=16% Similarity=0.244 Sum_probs=51.5
Q ss_pred CeecCcHHHHH--hHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHH-HHHHHhcCC-cEEEeccCCCCChHHHHHHH
Q 032950 1 MFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNL-QYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~--~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~-~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l 76 (130)
|||+++..++. .+..|+.. .+.|+++|+||+|+... ..... .+++ +.++ .++++||++|.|+.++|+.+
T Consensus 88 V~D~~~~~~~~d~~i~~~l~~-----~~~p~ilv~NK~D~~~~-~~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i 160 (439)
T 1mky_A 88 VVDGKRGITKEDESLADFLRK-----STVDTILVANKAENLRE-FEREVKPELY-SLGFGEPIPVSAEHNINLDTMLETI 160 (439)
T ss_dssp EEETTTCCCHHHHHHHHHHHH-----HTCCEEEEEESCCSHHH-HHHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEeCCCCccc-cHHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHH
Confidence 57776643322 23334432 27899999999998532 11122 3343 4566 68999999999999999999
Q ss_pred HHHHhcC
Q 032950 77 ARKLAGD 83 (130)
Q Consensus 77 ~~~i~~~ 83 (130)
++.+...
T Consensus 161 ~~~l~~~ 167 (439)
T 1mky_A 161 IKKLEEK 167 (439)
T ss_dssp HHHHHHT
T ss_pred HHhcccc
Confidence 9988754
No 151
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.42 E-value=2.7e-07 Score=63.78 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=42.1
Q ss_pred CcEEEEecCCCCCCc-ccCHH-HHHHHHhc--CCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032950 27 IPIVLCGNKVDVKNR-QVKAK-QVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 27 ~piilv~NK~Dl~~~-~v~~~-~~~~~~~~--~~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
.|.++|+||+|+.+. .+... ...++.+. +.+++++||++|.|++++|..|.+.+..
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 455999999998652 23333 44555544 5789999999999999999999887653
No 152
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.41 E-value=1.1e-06 Score=66.47 Aligned_cols=77 Identities=16% Similarity=0.187 Sum_probs=47.3
Q ss_pred CeecC----cHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCc-cc-C--HHHHHHHHh---cCCcEEEeccCCCCCh
Q 032950 1 MFDVT----ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QV-K--AKQVTFHRK---KNLQYYEISAKSNYNF 69 (130)
Q Consensus 1 V~d~~----~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~v-~--~~~~~~~~~---~~~~~~e~Sak~~~~v 69 (130)
|+|.+ .+.+++++..|. .....|+++|+||+|+.+. .. . .+...++.. .+.+++++||++|.||
T Consensus 111 Vvda~~g~~~~qt~e~l~~~~-----~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi 185 (408)
T 1s0u_A 111 VIAANEPCPQPQTKEHLMALE-----ILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANI 185 (408)
T ss_dssp EEETTSCSSCHHHHHHHHHHH-----HTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CH
T ss_pred EEECCCCCCCchhHHHHHHHH-----HcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCH
Confidence 46776 456776665442 1123589999999999752 21 1 223455554 2578999999999999
Q ss_pred HHHHHHHHHHHhc
Q 032950 70 EKPFLYLARKLAG 82 (130)
Q Consensus 70 ~~lf~~l~~~i~~ 82 (130)
+++|+.|...+..
T Consensus 186 ~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 186 DVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHHHHHHHSCC
T ss_pred HHHHHHHHHhCCC
Confidence 9999999987653
No 153
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.41 E-value=5.8e-07 Score=69.60 Aligned_cols=75 Identities=20% Similarity=0.208 Sum_probs=52.2
Q ss_pred CeecCc---HHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc-c---CHHHHHHHHhc----CCcEEEeccCCCCCh
Q 032950 1 MFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V---KAKQVTFHRKK----NLQYYEISAKSNYNF 69 (130)
Q Consensus 1 V~d~~~---~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-v---~~~~~~~~~~~----~~~~~e~Sak~~~~v 69 (130)
|+|.++ +.+++.+. .+.. .++|+++|+||+|+.+.. . ..+...++... +.+++++||++|.||
T Consensus 103 Vvda~~g~~~qt~e~l~----~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI 176 (482)
T 1wb1_A 103 VVDAKEGPKTQTGEHML----ILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGV 176 (482)
T ss_dssp EEETTTCSCHHHHHHHH----HHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTH
T ss_pred EEecCCCccHHHHHHHH----HHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCH
Confidence 567766 55655443 2222 378999999999997521 1 11233455444 478999999999999
Q ss_pred HHHHHHHHHHHh
Q 032950 70 EKPFLYLARKLA 81 (130)
Q Consensus 70 ~~lf~~l~~~i~ 81 (130)
+++++.|.+.+.
T Consensus 177 ~~L~~~L~~~i~ 188 (482)
T 1wb1_A 177 DELKNLIITTLN 188 (482)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999998764
No 154
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.38 E-value=4.1e-07 Score=69.51 Aligned_cols=58 Identities=19% Similarity=0.127 Sum_probs=42.5
Q ss_pred CCCcEEEEecCCCCCC-cccCHH-H-HHHHHh----cCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032950 25 ENIPIVLCGNKVDVKN-RQVKAK-Q-VTFHRK----KNLQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~-~~v~~~-~-~~~~~~----~~~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
.+.|+++|+||+|+.+ +..... . ..+... .+.+++++||++|.||+++|..+.+.+..
T Consensus 291 ~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 291 RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4799999999999865 332222 1 122222 34689999999999999999999887654
No 155
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.34 E-value=7.3e-07 Score=65.02 Aligned_cols=79 Identities=18% Similarity=0.178 Sum_probs=53.1
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccC-HHHHHHHHhcCC-cEEEeccCCCCChHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~-~~~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|+|.++ +.....|+-.... ..+.|+++|+||+|+.. +... .....++..++. .++.+||++|.|++++++.+.
T Consensus 95 Vvd~~~---~~~~~~~i~~~l~-~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 95 VVEGTR---WTPDDEMVLNKLR-EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp EEETTC---CCHHHHHHHHHHH-SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred EEeCCC---CCHHHHHHHHHHH-hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 356554 3334445433222 24789999999999875 2211 223445555665 699999999999999999998
Q ss_pred HHHhcC
Q 032950 78 RKLAGD 83 (130)
Q Consensus 78 ~~i~~~ 83 (130)
..+...
T Consensus 171 ~~l~~~ 176 (301)
T 1ega_A 171 KHLPEA 176 (301)
T ss_dssp TTCCBC
T ss_pred HhCCcC
Confidence 877654
No 156
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.32 E-value=4.2e-07 Score=65.87 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=52.2
Q ss_pred CeecCcHHHHHh--HHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032950 1 MFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 1 V~d~~~~~s~~~--~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
|+|..++.++.+ +.+|+ .+.|+++|.||+||.+.........+..+.+++++.+||+++.|+.+++..+.+
T Consensus 30 VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~ 102 (282)
T 1puj_A 30 LVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKE 102 (282)
T ss_dssp EEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHH
T ss_pred EEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHH
Confidence 567777765542 33343 578999999999997522111123444556788999999999999999988877
Q ss_pred HHh
Q 032950 79 KLA 81 (130)
Q Consensus 79 ~i~ 81 (130)
.+.
T Consensus 103 ~l~ 105 (282)
T 1puj_A 103 ILQ 105 (282)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 157
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.27 E-value=5e-07 Score=70.89 Aligned_cols=78 Identities=18% Similarity=0.165 Sum_probs=49.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc---cCHHHHHH---HHhc--CCcEEEeccCCCCChHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---VKAKQVTF---HRKK--NLQYYEISAKSNYNFEKP 72 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---v~~~~~~~---~~~~--~~~~~e~Sak~~~~v~~l 72 (130)
|||.++..+......|. .+.. .++|+++|+||+|+.+.. +......+ +..+ .++++++||++|.||+++
T Consensus 82 VVDa~dg~~~qt~e~l~-~~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eL 158 (537)
T 3izy_P 82 VVAADDGVMKQTVESIQ-HAKD--AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMAL 158 (537)
T ss_dssp ECBSSSCCCHHHHHHHH-HHHT--TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred EEECCCCccHHHHHHHH-HHHH--cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhH
Confidence 46666643333333332 2222 478999999999987521 22222211 1222 247999999999999999
Q ss_pred HHHHHHHHh
Q 032950 73 FLYLARKLA 81 (130)
Q Consensus 73 f~~l~~~i~ 81 (130)
|..|...+.
T Consensus 159 le~I~~l~~ 167 (537)
T 3izy_P 159 AEATIALAE 167 (537)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhh
Confidence 999998764
No 158
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.26 E-value=3.2e-06 Score=63.98 Aligned_cols=77 Identities=13% Similarity=0.156 Sum_probs=52.6
Q ss_pred CeecC----cHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc-c---CHHHHHHHHh---cCCcEEEeccCCCCCh
Q 032950 1 MFDVT----ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V---KAKQVTFHRK---KNLQYYEISAKSNYNF 69 (130)
Q Consensus 1 V~d~~----~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-v---~~~~~~~~~~---~~~~~~e~Sak~~~~v 69 (130)
|+|.+ .+.+++++..|.. + ...|+++|+||+|+.+.. . ..+...++.. .+.+++++||++|.||
T Consensus 113 Vvda~~g~~~~qt~e~l~~~~~-~----~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi 187 (410)
T 1kk1_A 113 VIAANEPCPRPQTREHLMALQI-I----GQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANI 187 (410)
T ss_dssp EEETTSCSSCHHHHHHHHHHHH-H----TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSH
T ss_pred EEECCCCCCChhHHHHHHHHHH-c----CCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCH
Confidence 46766 3557766654431 1 245899999999997521 1 1123344443 3578999999999999
Q ss_pred HHHHHHHHHHHhc
Q 032950 70 EKPFLYLARKLAG 82 (130)
Q Consensus 70 ~~lf~~l~~~i~~ 82 (130)
+++++.|...+..
T Consensus 188 ~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 188 DVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHHHHSCC
T ss_pred HHHHHHHHHhCCC
Confidence 9999999987653
No 159
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.24 E-value=1.5e-06 Score=68.04 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=23.6
Q ss_pred cEEEeccCCCCChHHHHHHHHHHHhc
Q 032950 57 QYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 57 ~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
++|.+||++|.||+++++.+++.+..
T Consensus 252 PV~~gSA~~~~GV~~Lld~i~~~~p~ 277 (528)
T 3tr5_A 252 PIFFGSAINNFGVGELLDAFVKEAPP 277 (528)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred EEEeccccCCccHHHHHHHHHHhCCC
Confidence 68999999999999999999998754
No 160
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.24 E-value=4e-07 Score=69.51 Aligned_cols=77 Identities=17% Similarity=0.153 Sum_probs=49.8
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCC-cEEEeccCCCCChHHHHHHHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
|+|+++..++. ..|+..+.+ ..+.|+++|+||+|+..... ...+++ +.++ .++++||++|.|+.++|+.+.+.
T Consensus 89 vvD~~~~~~~~--d~~~~~~l~-~~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~ 162 (436)
T 2hjg_A 89 MVNGREGVTAA--DEEVAKILY-RTKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEH 162 (436)
T ss_dssp EEETTTCSCHH--HHHHHHHHT-TCCSCEEEEEECCCC-------CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHT
T ss_pred EEeCCCCCCHH--HHHHHHHHH-HcCCCEEEEEECccCccchh--hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHh
Confidence 56776654433 234433322 25889999999999864211 111222 3454 68999999999999999999988
Q ss_pred HhcC
Q 032950 80 LAGD 83 (130)
Q Consensus 80 i~~~ 83 (130)
+...
T Consensus 163 l~~~ 166 (436)
T 2hjg_A 163 FKNI 166 (436)
T ss_dssp GGGC
T ss_pred cCcc
Confidence 8643
No 161
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.24 E-value=7.3e-07 Score=65.07 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=42.3
Q ss_pred HHHhCCCCcEEEEecCCCCCC-cccC---HHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHhcCCC
Q 032950 20 LCRVCENIPIVLCGNKVDVKN-RQVK---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 85 (130)
Q Consensus 20 ~~~~~~~~piilv~NK~Dl~~-~~v~---~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~~~~ 85 (130)
++.....+++++|+||.|+.. +.+. ..+..++..+++.+|++||++| |++++|..+++.+.....
T Consensus 149 l~~l~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p 217 (301)
T 2qnr_A 149 MKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP 217 (301)
T ss_dssp HHHHTTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred HHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence 334445789999999999875 2221 2356778888999999999999 999999999999876544
No 162
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.24 E-value=5.9e-06 Score=65.56 Aligned_cols=75 Identities=17% Similarity=0.172 Sum_probs=50.8
Q ss_pred CeecCc---HHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCc-ccC-------------H-----------HHHHHHH
Q 032950 1 MFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVK-------------A-----------KQVTFHR 52 (130)
Q Consensus 1 V~d~~~---~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~v~-------------~-----------~~~~~~~ 52 (130)
|||+++ +.+++.+..+ .. .++|+++|+||+|+... ... . +......
T Consensus 100 VvDa~~Gv~~qT~e~l~~l----~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~ 173 (594)
T 1g7s_A 100 IVDINEGFKPQTQEALNIL----RM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLH 173 (594)
T ss_dssp EEETTTCCCHHHHHHHHHH----HH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccHhHHHHHHHH----HH--cCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 578888 7787766532 22 47999999999998631 100 0 0001111
Q ss_pred hcC---------------CcEEEeccCCCCChHHHHHHHHHHHh
Q 032950 53 KKN---------------LQYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 53 ~~~---------------~~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
+.+ .+++.+||++|.||++++..|...+.
T Consensus 174 e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 174 EEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 212 37999999999999999999998765
No 163
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.19 E-value=3.4e-07 Score=69.97 Aligned_cols=73 Identities=12% Similarity=0.153 Sum_probs=48.1
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-----CCC-cEEEEecCCCCCCcc--------cCHHHHHHHHhcC-----CcEEEe
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVC-----ENI-PIVLCGNKVDVKNRQ--------VKAKQVTFHRKKN-----LQYYEI 61 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-----~~~-piilv~NK~Dl~~~~--------v~~~~~~~~~~~~-----~~~~e~ 61 (130)
|||+++ .+|+.+..|.....++. .++ ++++|+||+|+.+.. +..+...++...+ ++++++
T Consensus 114 VvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~i 192 (435)
T 1jny_A 114 VVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPV 192 (435)
T ss_dssp EEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEEC
T ss_pred EEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEe
Confidence 578887 67876555443333321 244 699999999997521 1122345666655 679999
Q ss_pred ccCCCCChHHHHH
Q 032950 62 SAKSNYNFEKPFL 74 (130)
Q Consensus 62 Sak~~~~v~~lf~ 74 (130)
||++|.||.+++.
T Consensus 193 SA~~g~~v~e~~~ 205 (435)
T 1jny_A 193 VAPSGDNITHKSE 205 (435)
T ss_dssp BTTTTBTTTBCCS
T ss_pred ecccCcccccccc
Confidence 9999999986654
No 164
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.13 E-value=2.1e-06 Score=59.09 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=42.4
Q ss_pred CCcEEEEecCCCCCCc-ccCHH-HHHHHHhc--CCcEEEeccCCCCChHHHHHHHHHHHhcC
Q 032950 26 NIPIVLCGNKVDVKNR-QVKAK-QVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKLAGD 83 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~-~v~~~-~~~~~~~~--~~~~~e~Sak~~~~v~~lf~~l~~~i~~~ 83 (130)
+.|+++|+||+|+.+. ..... ...++.+. +.+++++||++|.|++++|..|.+.+...
T Consensus 154 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 154 RVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred hcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 5789999999998642 12222 33444443 36899999999999999999999887543
No 165
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.99 E-value=6.9e-07 Score=68.89 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=45.3
Q ss_pred CeecCcH---HHHHhHHHHHHHHHHh-CCCCc-EEEEecCCCCCCccc--------CHHHHHHHHhc-C------CcEEE
Q 032950 1 MFDVTAR---LTYKNVPTWHRDLCRV-CENIP-IVLCGNKVDVKNRQV--------KAKQVTFHRKK-N------LQYYE 60 (130)
Q Consensus 1 V~d~~~~---~s~~~~~~~~~~~~~~-~~~~p-iilv~NK~Dl~~~~v--------~~~~~~~~~~~-~------~~~~e 60 (130)
|||.++. .+|+...+|...+... ..++| +|+|+||+|+.+... ..+...++... + +++++
T Consensus 151 VvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~ 230 (467)
T 1r5b_A 151 VISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMP 230 (467)
T ss_dssp EEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEE
T ss_pred EEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEe
Confidence 5677764 3454333343333222 24777 999999999954111 11234555554 3 56999
Q ss_pred eccCCCCChHHHH
Q 032950 61 ISAKSNYNFEKPF 73 (130)
Q Consensus 61 ~Sak~~~~v~~lf 73 (130)
+||++|.|+.++|
T Consensus 231 vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 231 VSAYTGQNVKDRV 243 (467)
T ss_dssp CBTTTTBTTSSCC
T ss_pred ccccccccccccc
Confidence 9999999998876
No 166
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.99 E-value=8.8e-06 Score=55.30 Aligned_cols=58 Identities=16% Similarity=0.017 Sum_probs=42.0
Q ss_pred CCCcEEEEecCCCCCCc---cc-CHHHHHHHHhcC--CcEEEeccCCCCChHHHHHHHHHHHhc
Q 032950 25 ENIPIVLCGNKVDVKNR---QV-KAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~---~v-~~~~~~~~~~~~--~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
.+.|+++|+||+|+... +. ...+..++.+.+ +.++.+||+++.|+++++..|.+.+.+
T Consensus 136 ~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 136 SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 47899999999998642 11 112344555543 568899999999999999999887643
No 167
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.95 E-value=1.9e-06 Score=61.98 Aligned_cols=75 Identities=11% Similarity=0.015 Sum_probs=46.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHh----c--C-CcEEEeccCCCCChHHHH
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK----K--N-LQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~----~--~-~~~~e~Sak~~~~v~~lf 73 (130)
|+|.++..+......|...+.. .+.|+++|+||+|+.+..... ...+.. . + .+++++||++|.|++++|
T Consensus 169 v~d~~~~~~~~~~~~~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~ 244 (299)
T 2aka_B 169 VSPANSDLANSDALKIAKEVDP--QGQRTIGVITKLDLMDEGTDA--RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDIT 244 (299)
T ss_dssp EEESSSCGGGCHHHHHHHHHCT--TCSSEEEEEECGGGSCTTCCC--HHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHH
T ss_pred EecCCcchhhhHHHHHHHHhCC--CCCeEEEEEEccccCCCCchH--HHHHhCCcCcCCCCcEEEECCChhhccccccHH
Confidence 3555553332222234444432 478999999999986522111 111211 1 2 357899999999999999
Q ss_pred HHHHHH
Q 032950 74 LYLARK 79 (130)
Q Consensus 74 ~~l~~~ 79 (130)
..|.+.
T Consensus 245 ~~l~~~ 250 (299)
T 2aka_B 245 AALAAE 250 (299)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
No 168
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.93 E-value=1.8e-06 Score=65.79 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=38.0
Q ss_pred HHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCC-cccCH---HHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032950 9 TYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-RQVKA---KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 9 s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~---~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
+|..+. .|+..+. .++++|+|+||+|+.. +.+.. ....++..+++++|++||+++.++.++|..+...++-
T Consensus 152 ~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iPf 227 (418)
T 2qag_C 152 GLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL 227 (418)
T ss_dssp SCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------CCE
T ss_pred CCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCCc
Confidence 455554 4766654 4899999999999865 33332 2456777789999999999999999999888876543
No 169
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.93 E-value=5.2e-06 Score=62.62 Aligned_cols=78 Identities=10% Similarity=-0.015 Sum_probs=49.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCc-EEEEecCCCCCC-cc----cCHHHHHHHHhcC-----CcEEEeccCCCCC-
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKN-RQ----VKAKQVTFHRKKN-----LQYYEISAKSNYN- 68 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~-~~----v~~~~~~~~~~~~-----~~~~e~Sak~~~~- 68 (130)
|+|.++.........| ..+.. .++| +++|+||+|+.+ .. +..+...++.+.+ ++++++||++|.|
T Consensus 96 Vvda~~g~~~qt~e~l-~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~ 172 (397)
T 1d2e_A 96 VVAANDGPMPQTREHL-LLARQ--IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQ 172 (397)
T ss_dssp EEETTTCSCHHHHHHH-HHHHH--TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTT
T ss_pred EEECCCCCCHHHHHHH-HHHHH--cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccc
Confidence 4677663222222233 33333 3788 789999999974 11 1123445666655 5899999999765
Q ss_pred ---------hHHHHHHHHHHHh
Q 032950 69 ---------FEKPFLYLARKLA 81 (130)
Q Consensus 69 ---------v~~lf~~l~~~i~ 81 (130)
+.++++.|...+.
T Consensus 173 ~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 173 RDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp CCTTTTHHHHHHHHHHHHHHSC
T ss_pred cCCCccCCcHHHHHHHHHHhCC
Confidence 8889988887664
No 170
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.90 E-value=4.4e-06 Score=63.09 Aligned_cols=78 Identities=12% Similarity=0.052 Sum_probs=50.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCc-EEEEecCCCCCC-cc-c---CHHHHHHHHhcC-----CcEEEeccCCCCC-
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKN-RQ-V---KAKQVTFHRKKN-----LQYYEISAKSNYN- 68 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~-~~-v---~~~~~~~~~~~~-----~~~~e~Sak~~~~- 68 (130)
|+|.++... .....|+..+.. .++| +++|+||+|+.+ .. . ..+...++...+ .+++++||++|.|
T Consensus 105 Vvda~~g~~-~qt~~~l~~~~~--~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v 181 (405)
T 2c78_A 105 VVSAADGPM-PQTREHILLARQ--VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQ 181 (405)
T ss_dssp EEETTTCCC-HHHHHHHHHHHH--TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHH
T ss_pred EEECCCCCc-HHHHHHHHHHHH--cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhh
Confidence 467765432 334445554544 3788 899999999974 11 1 112345566555 5799999999987
Q ss_pred -----------------hHHHHHHHHHHHh
Q 032950 69 -----------------FEKPFLYLARKLA 81 (130)
Q Consensus 69 -----------------v~~lf~~l~~~i~ 81 (130)
+.++++.|...+.
T Consensus 182 ~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 182 MHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred hccccccccCCCcccccHHHHHHHHHhhcC
Confidence 6777777666554
No 171
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.90 E-value=3.5e-06 Score=59.65 Aligned_cols=58 Identities=5% Similarity=0.003 Sum_probs=39.2
Q ss_pred CcEEE-EecCCCCCCcccCH--------HHHHHHHhcCCc---E--EEeccCCCCChHHHHHHHHHHHhcCC
Q 032950 27 IPIVL-CGNKVDVKNRQVKA--------KQVTFHRKKNLQ---Y--YEISAKSNYNFEKPFLYLARKLAGDP 84 (130)
Q Consensus 27 ~piil-v~NK~Dl~~~~v~~--------~~~~~~~~~~~~---~--~e~Sak~~~~v~~lf~~l~~~i~~~~ 84 (130)
.|+++ +.||+|+.+..+.. ....++...+.. + +++||++|.|++++|..|.+.+....
T Consensus 139 ~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 139 GHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp GGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 45554 45599997532222 123355555432 2 78999999999999999999887654
No 172
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.89 E-value=5e-06 Score=63.43 Aligned_cols=71 Identities=18% Similarity=0.154 Sum_probs=44.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCC-cEEEEecCCCCCCc--c----cCHHHHHHHHhcC-----CcEEEeccCCCCC
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENI-PIVLCGNKVDVKNR--Q----VKAKQVTFHRKKN-----LQYYEISAKSNYN 68 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~-piilv~NK~Dl~~~--~----v~~~~~~~~~~~~-----~~~~e~Sak~~~~ 68 (130)
|+|+++.. +.....|+..+.. .++ |+++|+||+|+.+. . +..+...++..++ .+++++||++|.|
T Consensus 134 VvDa~~g~-~~qt~~~l~~~~~--~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~g 210 (434)
T 1zun_B 134 LVDARYGV-QTQTRRHSYIASL--LGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDN 210 (434)
T ss_dssp EEETTTCS-CHHHHHHHHHHHH--TTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTT
T ss_pred EEECCCCC-cHHHHHHHHHHHH--cCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCC
Confidence 46776542 2223334443333 244 69999999999751 1 1122345666666 6799999999999
Q ss_pred hHHHHH
Q 032950 69 FEKPFL 74 (130)
Q Consensus 69 v~~lf~ 74 (130)
|+++|.
T Consensus 211 i~~~~~ 216 (434)
T 1zun_B 211 VVNKSE 216 (434)
T ss_dssp TSSCCT
T ss_pred cccccc
Confidence 998644
No 173
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.89 E-value=1.5e-05 Score=59.77 Aligned_cols=69 Identities=4% Similarity=-0.094 Sum_probs=47.0
Q ss_pred HHhHHHHHHHHHHhCCCCcE-EEEec-CCCCCCcc-cC---HHHHHHHHhcC---CcEEE--eccCC---CCChHHHHHH
Q 032950 10 YKNVPTWHRDLCRVCENIPI-VLCGN-KVDVKNRQ-VK---AKQVTFHRKKN---LQYYE--ISAKS---NYNFEKPFLY 75 (130)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~pi-ilv~N-K~Dl~~~~-v~---~~~~~~~~~~~---~~~~e--~Sak~---~~~v~~lf~~ 75 (130)
+.....|...+.. .++|. ++++| |+|+ +.. +. .+...++...+ +++++ +||++ |.||+++|..
T Consensus 97 ~~qt~e~~~~~~~--~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~ 173 (370)
T 2elf_A 97 DAHTGECIIALDL--LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKAR 173 (370)
T ss_dssp CHHHHHHHHHHHH--TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHH
T ss_pred cHHHHHHHHHHHH--cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHH
Confidence 4445556555444 36777 88888 9999 522 22 12334444433 68999 99999 9999999999
Q ss_pred HHHHHh
Q 032950 76 LARKLA 81 (130)
Q Consensus 76 l~~~i~ 81 (130)
|.+.+.
T Consensus 174 l~~~~~ 179 (370)
T 2elf_A 174 INEVAE 179 (370)
T ss_dssp HHHHHH
T ss_pred HHhhcc
Confidence 988764
No 174
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.86 E-value=3.8e-05 Score=54.01 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=41.1
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHH----------------------------HHHhcC--CcEEEeccCCCCChHHHHH
Q 032950 25 ENIPIVLCGNKVDVKNRQVKAKQVT----------------------------FHRKKN--LQYYEISAKSNYNFEKPFL 74 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~----------------------------~~~~~~--~~~~e~Sak~~~~v~~lf~ 74 (130)
.+.|+++|+||+|+.......+... ++.+++ .+++++||++|.|+++++.
T Consensus 170 ~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 249 (262)
T 1yrb_A 170 LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLET 249 (262)
T ss_dssp HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHH
T ss_pred cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHH
Confidence 3689999999999865210000001 123333 4799999999999999999
Q ss_pred HHHHHHhcC
Q 032950 75 YLARKLAGD 83 (130)
Q Consensus 75 ~l~~~i~~~ 83 (130)
.|.+.+...
T Consensus 250 ~i~~~~~~~ 258 (262)
T 1yrb_A 250 LAYEHYCTC 258 (262)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhccc
Confidence 998877543
No 175
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.84 E-value=1.3e-05 Score=59.61 Aligned_cols=57 Identities=11% Similarity=0.065 Sum_probs=40.5
Q ss_pred CCcEEEEecCCCCCCc-ccCHHHHHHHH----------hcCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032950 26 NIPIVLCGNKVDVKNR-QVKAKQVTFHR----------KKNLQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~-~v~~~~~~~~~----------~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
..|+++|+||+|+.+. ........+.. .++.+++.+||++|.||++++..|.+.+..
T Consensus 217 ~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 217 ELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp GGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4689999999998642 11111112211 125789999999999999999999988754
No 176
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.83 E-value=2.3e-06 Score=66.67 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=38.1
Q ss_pred CCCcEEEEecCCCCCC---cccCHHH---HHHHHhcC--CcEEEeccCCCCChHHHHHHHHH
Q 032950 25 ENIPIVLCGNKVDVKN---RQVKAKQ---VTFHRKKN--LQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~---~~v~~~~---~~~~~~~~--~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
.++|+++++||+|+.+ ..+.... ..++..++ ++++++||++|.||+++|+.|..
T Consensus 102 ~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 102 AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 4789999999999964 1121110 01122333 68999999999999999998864
No 177
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.81 E-value=2.4e-05 Score=62.75 Aligned_cols=26 Identities=8% Similarity=-0.040 Sum_probs=23.6
Q ss_pred CcEEEeccCCCCChHHHHHHHHHHHh
Q 032950 56 LQYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 56 ~~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
+++|++||++|.||+.+|+.++..+.
T Consensus 248 ~pv~~~SA~~~~Gv~~Ll~~i~~~lp 273 (665)
T 2dy1_A 248 YPVALASGEREIGVLPLLELILEALP 273 (665)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred eEEEEeecccCcCHHHHHHHHHHhCC
Confidence 47999999999999999999998774
No 178
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.80 E-value=3.4e-05 Score=59.57 Aligned_cols=72 Identities=18% Similarity=0.120 Sum_probs=38.5
Q ss_pred CeecCcHHHHHhH-----HHHHHHHHHhCCCCcEEEEecCCCCCC-cccCH-----HHHHHHHhc-----CCcEEEeccC
Q 032950 1 MFDVTARLTYKNV-----PTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKA-----KQVTFHRKK-----NLQYYEISAK 64 (130)
Q Consensus 1 V~d~~~~~s~~~~-----~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~-----~~~~~~~~~-----~~~~~e~Sak 64 (130)
|||+++..++..+ ..+...+.....-.|+|+|+||+|+.+ +.... +...++... +++++++||+
T Consensus 141 VvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~ 220 (483)
T 3p26_A 141 CVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGF 220 (483)
T ss_dssp EEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSS
T ss_pred EEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeee
Confidence 5777776443321 111211222223356999999999975 22111 122333333 3579999999
Q ss_pred CCCChHHH
Q 032950 65 SNYNFEKP 72 (130)
Q Consensus 65 ~~~~v~~l 72 (130)
+|.||+++
T Consensus 221 ~g~gi~el 228 (483)
T 3p26_A 221 SGEGVYKI 228 (483)
T ss_dssp SCTTSSSS
T ss_pred cCCCcccc
Confidence 99999853
No 179
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.79 E-value=5.2e-05 Score=57.99 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=34.5
Q ss_pred CCCc-EEEEecCCCCCCccc--------CHHHHHHHHhcC------CcEEEeccCCCCChHHHHH
Q 032950 25 ENIP-IVLCGNKVDVKNRQV--------KAKQVTFHRKKN------LQYYEISAKSNYNFEKPFL 74 (130)
Q Consensus 25 ~~~p-iilv~NK~Dl~~~~v--------~~~~~~~~~~~~------~~~~e~Sak~~~~v~~lf~ 74 (130)
.++| +|+|+||+|+..... ..+...++...+ ++++.+||++|.|+.+++.
T Consensus 153 ~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 153 AGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 3667 999999999853111 112234444444 4699999999999999765
No 180
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.79 E-value=2.4e-05 Score=52.34 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=33.6
Q ss_pred CeecC-cHHHHHhHHHHHHHHHHhC-----CCCcEEEEecCCCCCC
Q 032950 1 MFDVT-ARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN 40 (130)
Q Consensus 1 V~d~~-~~~s~~~~~~~~~~~~~~~-----~~~piilv~NK~Dl~~ 40 (130)
|||++ ++.+|..+..|+..+.... .++|+++|+||+|+.+
T Consensus 125 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 170 (193)
T 2ged_A 125 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 170 (193)
T ss_dssp EEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred EEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence 68999 8899999999887776532 4899999999999975
No 181
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.78 E-value=4.4e-06 Score=59.85 Aligned_cols=56 Identities=13% Similarity=0.186 Sum_probs=31.7
Q ss_pred CCcEEEEecCCCCCC-cccCH---HHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032950 26 NIPIVLCGNKVDVKN-RQVKA---KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 26 ~~piilv~NK~Dl~~-~~v~~---~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
++|+++|+||+|+.. ..... .....+...+++++.+||+++.|+++++..|...+.
T Consensus 144 ~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 144 KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 899999999999864 11111 123344567888999999999999999999887653
No 182
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.65 E-value=2.3e-05 Score=54.78 Aligned_cols=59 Identities=7% Similarity=0.001 Sum_probs=40.2
Q ss_pred CCCcEEEEecCC-CCCCcccCHHHHHHH--H--hcCCcEEEeccCCCCChHHHHHHHHHHHhcC
Q 032950 25 ENIPIVLCGNKV-DVKNRQVKAKQVTFH--R--KKNLQYYEISAKSNYNFEKPFLYLARKLAGD 83 (130)
Q Consensus 25 ~~~piilv~NK~-Dl~~~~v~~~~~~~~--~--~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~~ 83 (130)
.++|+++.+||. |+++..-..+..+.. . .....++.|||++|.|+.+.++||+..+..+
T Consensus 161 ~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 161 SGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp SCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred CCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 578999999995 776422112211111 1 1234588999999999999999999776543
No 183
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.64 E-value=2.5e-05 Score=59.87 Aligned_cols=66 Identities=18% Similarity=0.191 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCC-cEEEeccCCCCChHHHHHHHHHHHhc
Q 032950 13 VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 13 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
...|+..+.+. .+.|+++|+||+|+.+.. ....++. ..++ .++.+||++|.|+.++|..+.+.+..
T Consensus 119 ~d~~l~~~l~~-~~~pvilV~NK~D~~~~~--~~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 119 ADEEVAKILYR-TKKPVVLAVNKLDNTEMR--ANIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp HHHHHHHHHTT-CCSCEEEEEECC-----------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHH-cCCCEEEEEECccchhhh--hhHHHHH-HcCCCceEEeecccccchHHHHHHHHhhccc
Confidence 34444433322 589999999999985421 0111121 2332 46899999999999999999887654
No 184
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.64 E-value=2.7e-05 Score=59.84 Aligned_cols=48 Identities=17% Similarity=0.271 Sum_probs=33.3
Q ss_pred CCCc-EEEEecCCCCCC--cc----cCHHHHHHHHhcC-----CcEEEeccCCCCChHHH
Q 032950 25 ENIP-IVLCGNKVDVKN--RQ----VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 72 (130)
Q Consensus 25 ~~~p-iilv~NK~Dl~~--~~----v~~~~~~~~~~~~-----~~~~e~Sak~~~~v~~l 72 (130)
.++| +|+|+||+|+.+ .. +..+...++...+ ++++++||++|.|+.++
T Consensus 143 ~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 143 LGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 3665 999999999963 11 1122334555555 57999999999998754
No 185
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.61 E-value=4.7e-05 Score=61.41 Aligned_cols=80 Identities=11% Similarity=0.088 Sum_probs=53.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc-cCH-----------HHHH-----HHHh--------cC
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA-----------KQVT-----FHRK--------KN 55 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-v~~-----------~~~~-----~~~~--------~~ 55 (130)
|+|.+++.++.....|...+.. .+.|+++|+||+|+.... ++. .... +... .+
T Consensus 207 Vvda~~~~s~~e~~~l~~~l~~--~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~ 284 (695)
T 2j69_A 207 VMRASQPCTLGERRYLENYIKG--RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYD 284 (695)
T ss_dssp EEETTSTTCHHHHHHHHHHTTT--SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGG
T ss_pred EEeCCCccchhHHHHHHHHHHh--hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCC
Confidence 5677776666666666554433 367899999999986421 110 0111 1111 12
Q ss_pred CcEEEeccC--------------CCCChHHHHHHHHHHHhc
Q 032950 56 LQYYEISAK--------------SNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 56 ~~~~e~Sak--------------~~~~v~~lf~~l~~~i~~ 82 (130)
.++|.+||+ +|.|+++++..|.+.+..
T Consensus 285 ~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 285 ERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp GTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 368999999 999999999999887754
No 186
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.61 E-value=4.8e-05 Score=64.50 Aligned_cols=78 Identities=13% Similarity=0.043 Sum_probs=50.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCc-EEEEecCCCCCCc-c----cCHHHHHHHHhcC-----CcEEEeccCCC---
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR-Q----VKAKQVTFHRKKN-----LQYYEISAKSN--- 66 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~-~----v~~~~~~~~~~~~-----~~~~e~Sak~~--- 66 (130)
|+|.++.. +.....|+..+.. .++| +|+|+||+|+.+. . +..+...++.+.+ ++++++||++|
T Consensus 389 VVDAtdGv-~~QTrEhL~ll~~--lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng 465 (1289)
T 3avx_A 389 VVAATDGP-MPQTREHILLGRQ--VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEG 465 (1289)
T ss_dssp EEETTTCS-CTTHHHHHHHHHH--HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTC
T ss_pred EEcCCccC-cHHHHHHHHHHHH--cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCC
Confidence 46776542 2233344444443 3688 7899999999751 1 1122445666655 57999999999
Q ss_pred -----CChHHHHHHHHHHHh
Q 032950 67 -----YNFEKPFLYLARKLA 81 (130)
Q Consensus 67 -----~~v~~lf~~l~~~i~ 81 (130)
.||.++|+.|...+.
T Consensus 466 ~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 466 DAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp CHHHHHHHHHHHHHHHHTSC
T ss_pred CccccccchhhHhHHhhhcC
Confidence 468888888877554
No 187
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.60 E-value=1.5e-05 Score=58.43 Aligned_cols=72 Identities=14% Similarity=0.121 Sum_probs=46.9
Q ss_pred CeecCcHH-HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCccc----CHHHHHHHHhcCCcEEEeccCCCCChHHHHH
Q 032950 1 MFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 74 (130)
Q Consensus 1 V~d~~~~~-s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v----~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~ 74 (130)
|+|+.+|. +...+.+++..... .++|.++|.||+||.+... -.....+....|++++.+||+++.|+++++.
T Consensus 93 V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 93 VFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGG
T ss_pred EEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHh
Confidence 45666553 44455666543322 5899999999999976321 1112344455688999999999888776654
No 188
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.53 E-value=0.00025 Score=51.81 Aligned_cols=59 Identities=7% Similarity=-0.001 Sum_probs=40.3
Q ss_pred CCCcEEEEecC-CCCCCcccCHHHHHHH--H--hcCCcEEEeccCCCCChHHHHHHHHHHHhcC
Q 032950 25 ENIPIVLCGNK-VDVKNRQVKAKQVTFH--R--KKNLQYYEISAKSNYNFEKPFLYLARKLAGD 83 (130)
Q Consensus 25 ~~~piilv~NK-~Dl~~~~v~~~~~~~~--~--~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~~ 83 (130)
.++|+++.+|| .|+++..-..+..+.. . .....+..|||.+|.|+.+.+++|+..+..+
T Consensus 246 ~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 246 SGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp TTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred CCCeEEEEeCCcccccCCCCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 58999999997 5886522112211111 1 1234588999999999999999999887543
No 189
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.42 E-value=0.00031 Score=48.91 Aligned_cols=59 Identities=8% Similarity=0.046 Sum_probs=41.6
Q ss_pred CCcEEEEecCCCCCC-cccC-------HHHHHHHHhcCCcEEEeccCCC-----CChHHHHHHHHHHHhcCC
Q 032950 26 NIPIVLCGNKVDVKN-RQVK-------AKQVTFHRKKNLQYYEISAKSN-----YNFEKPFLYLARKLAGDP 84 (130)
Q Consensus 26 ~~piilv~NK~Dl~~-~~v~-------~~~~~~~~~~~~~~~e~Sak~~-----~~v~~lf~~l~~~i~~~~ 84 (130)
..|+++|+||+|+.. +.+. .....++.+++..|+.+++..+ .+|.++|..+.+.+.+..
T Consensus 145 ~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~ 216 (239)
T 3lxx_A 145 RSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENK 216 (239)
T ss_dssp GGGEEEEEECGGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 469999999999854 2222 2345677778878888877654 689999999888876543
No 190
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00012 Score=58.22 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=31.8
Q ss_pred CcEEEEecCCCCCC-ccc-----CHHHHHHHHhcC-----CcEEEeccCCCCChHHH
Q 032950 27 IPIVLCGNKVDVKN-RQV-----KAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 72 (130)
Q Consensus 27 ~piilv~NK~Dl~~-~~v-----~~~~~~~~~~~~-----~~~~e~Sak~~~~v~~l 72 (130)
.|+|+|+||+|+.+ +.. ......++...+ ++++.+||++|.||.++
T Consensus 306 ~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 306 HNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred CeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 45999999999975 111 111223444443 57999999999999876
No 191
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.40 E-value=0.00011 Score=52.64 Aligned_cols=52 Identities=17% Similarity=0.098 Sum_probs=37.9
Q ss_pred CCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032950 26 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
+.|.++|.||+||.+.........+..+.|+++ .+||++|.|+++++..+..
T Consensus 46 ~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 46 RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 689999999999975321111234445567888 9999999999998876644
No 192
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.40 E-value=0.00022 Score=53.34 Aligned_cols=66 Identities=11% Similarity=0.089 Sum_probs=44.0
Q ss_pred HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCH---HHHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032950 9 TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 9 s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~---~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
+...+.+|+-.... .++|.++|.||+||.+..... .........|++++.+||+++.|++++...+
T Consensus 145 ~~~~i~r~L~~a~~--~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 145 SLNIIDRYLVGCET--LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp CHHHHHHHHHHHHH--HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBTHHHHHHHH
T ss_pred CHHHHHHHHHHHHh--cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcCHHHHHHhc
Confidence 34455666543332 478889999999997532111 1123334568899999999999999887643
No 193
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.36 E-value=0.00029 Score=56.83 Aligned_cols=27 Identities=15% Similarity=-0.031 Sum_probs=23.7
Q ss_pred CcEEEeccCCCCChHHHHHHHHHHHhc
Q 032950 56 LQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 56 ~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
+++|..||++|.||+.+++.++..+..
T Consensus 256 ~Pv~~gSA~~~~Gv~~LLd~i~~~lPs 282 (691)
T 1dar_A 256 TPVFLGSALKNKGVQLLLDAVVDYLPS 282 (691)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred eEEEEeecccCcCHHHHHHHHHHhCCC
Confidence 468899999999999999999988854
No 194
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.31 E-value=8.1e-05 Score=59.00 Aligned_cols=45 Identities=29% Similarity=0.354 Sum_probs=30.7
Q ss_pred CCc-EEEEecCCCCCC-cc--c---CHHHHHHH-HhcCC-----cEEEeccCCCCChH
Q 032950 26 NIP-IVLCGNKVDVKN-RQ--V---KAKQVTFH-RKKNL-----QYYEISAKSNYNFE 70 (130)
Q Consensus 26 ~~p-iilv~NK~Dl~~-~~--v---~~~~~~~~-~~~~~-----~~~e~Sak~~~~v~ 70 (130)
++| +|+|+||+|+.+ .. . ..+...++ ...++ +++.+||++|.||.
T Consensus 314 gip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 314 GISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp SCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred CCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 565 999999999864 11 1 11223344 44454 69999999999998
No 195
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.31 E-value=0.00039 Score=48.96 Aligned_cols=59 Identities=5% Similarity=0.027 Sum_probs=43.0
Q ss_pred CCcEEEEecCCCCCCcccC--------HHHHHHHHhcCCcEEEeccCC-----CCChHHHHHHHHHHHhcCC
Q 032950 26 NIPIVLCGNKVDVKNRQVK--------AKQVTFHRKKNLQYYEISAKS-----NYNFEKPFLYLARKLAGDP 84 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~~v~--------~~~~~~~~~~~~~~~e~Sak~-----~~~v~~lf~~l~~~i~~~~ 84 (130)
+.|+|+++||.|+.+..+. .....+....+..|+.+++.. +.||.+|+..+.+.+.+..
T Consensus 139 ~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~ 210 (247)
T 3lxw_A 139 KWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHK 210 (247)
T ss_dssp GGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 6899999999999753221 123556677777777666655 5799999999988887543
No 196
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.10 E-value=0.00064 Score=50.19 Aligned_cols=56 Identities=13% Similarity=0.064 Sum_probs=38.6
Q ss_pred CCcEEEEecCCCCCCc-ccCHHHHHH---HHhc-------CCcEEEeccCCCCChHHHHHHHHHHHh
Q 032950 26 NIPIVLCGNKVDVKNR-QVKAKQVTF---HRKK-------NLQYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~-~v~~~~~~~---~~~~-------~~~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
+.|.++|+||+|+.+. .+......+ .... ..+++.+||++|.|+++++..|...+.
T Consensus 194 ~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 194 EVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred cccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 4588999999998642 121111111 1111 356899999999999999999988764
No 197
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.02 E-value=0.00092 Score=49.57 Aligned_cols=56 Identities=13% Similarity=0.023 Sum_probs=37.8
Q ss_pred CCcEEEEecCCCCCCcc-cCHHHHHHHH----------hcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032950 26 NIPIVLCGNKVDVKNRQ-VKAKQVTFHR----------KKNLQYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~~-v~~~~~~~~~----------~~~~~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
..|.++|+||+|+.+.. .......+.. .+..+++.+||++|.|+++++..|.+.+.
T Consensus 212 ~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 212 EMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 46889999999985311 1001111211 12356899999999999999999988764
No 198
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=96.98 E-value=0.0023 Score=51.69 Aligned_cols=27 Identities=15% Similarity=-0.092 Sum_probs=23.7
Q ss_pred CcEEEeccCCCCChHHHHHHHHHHHhc
Q 032950 56 LQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 56 ~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
+++|..||++|.||..+++.++..+..
T Consensus 262 ~Pv~~gSa~~~~Gv~~LLd~i~~~lPs 288 (704)
T 2rdo_7 262 ILVTCGSAFKNKGVQAMLDAVIDYLPS 288 (704)
T ss_pred eEEEEeecccCccHHHHHHHHHHHCCC
Confidence 468899999999999999999988754
No 199
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.87 E-value=0.0025 Score=51.44 Aligned_cols=27 Identities=11% Similarity=-0.116 Sum_probs=22.8
Q ss_pred CcEEEeccCCCCChHHHHHHHHHHHhc
Q 032950 56 LQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 56 ~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
.|+|..||.+|.||+.+++.++..+..
T Consensus 254 ~Pv~~gSA~~~~Gv~~LLd~i~~~lPs 280 (693)
T 2xex_A 254 YPVLCGTAFKNKGVQLMLDAVIDYLPS 280 (693)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred eeEEEeecccCcCHHHHHHHHHHHCCC
Confidence 368889999999999999998888753
No 200
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.52 E-value=0.00016 Score=53.61 Aligned_cols=52 Identities=13% Similarity=0.022 Sum_probs=36.8
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHHHh------cC-CcEEEeccCCCCChHHHHHHHHH
Q 032950 25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRK------KN-LQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~------~~-~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
.+.|+++|+||+|+.+..... ..+... .+ ..++.+||++|.|++++|..+.+
T Consensus 196 ~~~~~i~V~NK~Dl~~~~~~~--~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 196 QGQRTIGVITKLDLMDEGTDA--RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp TCTTEEEEEECGGGSCTTCCC--HHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred CCCceEEEeccccccCcchhH--HHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 478999999999986532111 111111 22 24788999999999999999886
No 201
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=96.48 E-value=0.0053 Score=48.04 Aligned_cols=27 Identities=11% Similarity=0.017 Sum_probs=22.2
Q ss_pred CcEEEeccCCCCChHHHHHHHHHHHhc
Q 032950 56 LQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 56 ~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
.|+|..||.+|.||+.+++.+...+..
T Consensus 252 ~Pv~~gSA~~~~Gv~~LLd~i~~~~P~ 278 (529)
T 2h5e_A 252 TPVFFGTALGNFGVDHMLDGLVEWAPA 278 (529)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSCS
T ss_pred eEEEeeecccCCCHHHHHHHHHHhCCC
Confidence 368888999999999999888887753
No 202
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.35 E-value=0.0031 Score=45.37 Aligned_cols=58 Identities=10% Similarity=0.125 Sum_probs=38.8
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHHHh----cCCcEEEeccCC------CCChHHHHHHHHHHHhcCC
Q 032950 25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRK----KNLQYYEISAKS------NYNFEKPFLYLARKLAGDP 84 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~----~~~~~~e~Sak~------~~~v~~lf~~l~~~i~~~~ 84 (130)
.+.|+++|+||+|+.+.... ...++.. ++..|+.+|+.. +.|+.+++..+...+....
T Consensus 197 ~~~~~i~v~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~ 264 (315)
T 1jwy_B 197 EGKRTIGVITKLDLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHP 264 (315)
T ss_dssp SCSSEEEEEECTTSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCT
T ss_pred CCCcEEEEEcCcccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCC
Confidence 47899999999998652211 1122222 225677776544 7899999999988886543
No 203
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.32 E-value=0.0007 Score=50.15 Aligned_cols=64 Identities=11% Similarity=-0.020 Sum_probs=41.9
Q ss_pred HHHHHHHHhC-CCCcEEEEecCCCCCCc-ccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032950 15 TWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 15 ~~~~~~~~~~-~~~piilv~NK~Dl~~~-~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
.|+..+.... .+.|+++|+||+|+... ..... ...+....+.+|+.+|++++.++++.+..+.+
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~ 257 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAA 257 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHH
Confidence 4555455443 47899999999998652 22222 22233345678999999999988876654433
No 204
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.90 E-value=0.00098 Score=50.36 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=32.2
Q ss_pred CCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHH
Q 032950 26 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 74 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~ 74 (130)
..|+++|+||+|+.....-......+...+.+++.+||+.+.|+.+++.
T Consensus 214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 214 NKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred CCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence 5899999999998521100111222233367899999999988876544
No 205
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=95.39 E-value=0.028 Score=44.13 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=23.7
Q ss_pred CcEEEeccCCCCChHHHHHHHHHHHhc
Q 032950 56 LQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 56 ~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
.|+|..||++|.||..|++.++..++.
T Consensus 269 ~PV~~gSA~~~~Gv~~LLd~iv~~~Ps 295 (548)
T 3vqt_A 269 TPVFFGSAINNFGVREMLDMFVEFAPG 295 (548)
T ss_dssp EEEEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred ceeeecccccCcCHHHHHHHHHHhCCC
Confidence 468889999999999999999988764
No 206
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.18 E-value=0.037 Score=40.73 Aligned_cols=55 Identities=9% Similarity=0.087 Sum_probs=35.8
Q ss_pred CcEEEEecCCCCCC-cccCHH-HHHHHHh----------cCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032950 27 IPIVLCGNKVDVKN-RQVKAK-QVTFHRK----------KNLQYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 27 ~piilv~NK~Dl~~-~~v~~~-~~~~~~~----------~~~~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
.+.++|.||+|+.. ...+.. ...+... +..+++.+||+++.|+++++..|.+...
T Consensus 194 ~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 194 LADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred cccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 35677789999643 211111 1222211 1356889999999999999999888654
No 207
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=95.15 E-value=0.0034 Score=51.24 Aligned_cols=53 Identities=15% Similarity=0.045 Sum_probs=36.8
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHHH-h-----cC-CcEEEeccCCCCChHHHHHHHHHH
Q 032950 25 ENIPIVLCGNKVDVKNRQVKAKQVTFHR-K-----KN-LQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~-~-----~~-~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
.+.|+++|.||+|+....... ..... + .+ .+++.+||++|.|+++++..+.+.
T Consensus 216 ~g~pvIlVlNKiDlv~~~~~~--~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 216 QGQRTIGVITKLDLMDEGTDA--RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp TCSSEEEEEECTTSSCTTCCS--HHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred cCCCEEEEEeCcccCCcchhh--HHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 478999999999986532111 11111 1 12 246789999999999999998873
No 208
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=94.45 E-value=0.038 Score=44.14 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.2
Q ss_pred CcEEEeccCCCCChHHHHHHHHHHHh
Q 032950 56 LQYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 56 ~~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
.|+|..||+++.||+.+++.+...+.
T Consensus 213 ~Pv~~gSa~~~~Gv~~LLd~i~~~~p 238 (638)
T 3j25_A 213 FPLYHGSAKSNIGIDNLIEVITNKFY 238 (638)
T ss_dssp CCCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred ccccccccccCCCchhHhhhhhcccc
Confidence 56788999999999999998887654
No 209
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=92.62 E-value=0.029 Score=41.95 Aligned_cols=50 Identities=8% Similarity=0.010 Sum_probs=35.0
Q ss_pred CCcEEEEecCCCC--CC---cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHH
Q 032950 26 NIPIVLCGNKVDV--KN---RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 75 (130)
Q Consensus 26 ~~piilv~NK~Dl--~~---~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~ 75 (130)
..|+++++||.|. .+ +........++...+.+++.+||+++.++.+++..
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~ 255 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGE 255 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHH
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchH
Confidence 5799999999973 22 11112245677777889999999987766665544
No 210
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=91.96 E-value=0.065 Score=37.78 Aligned_cols=39 Identities=5% Similarity=-0.005 Sum_probs=25.3
Q ss_pred CeecCcHHHHHhH-HHHHHHHHHhCC-C--CcEEEEecCCCCCC
Q 032950 1 MFDVTARLTYKNV-PTWHRDLCRVCE-N--IPIVLCGNKVDVKN 40 (130)
Q Consensus 1 V~d~~~~~s~~~~-~~~~~~~~~~~~-~--~piilv~NK~Dl~~ 40 (130)
|||++.. +|... ..|+..+..... + .|+++|+||+|+..
T Consensus 126 v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 126 VDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp EEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred EEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 4566542 34433 357777765533 2 69999999999864
No 211
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=91.03 E-value=0.58 Score=37.76 Aligned_cols=27 Identities=11% Similarity=-0.146 Sum_probs=22.8
Q ss_pred CcEEEeccCCCCChHHHHHHHHHHHhc
Q 032950 56 LQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 56 ~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
.+.+..||..+.|+..+++.++..+..
T Consensus 265 ~pv~~gsa~~~~gv~~lLd~i~~~lPs 291 (709)
T 4fn5_A 265 VPAVCGSSFKNKGVPLVLDAVIDYLPA 291 (709)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHSCC
T ss_pred eeeeeeecccCCchHHHHHHHHhhCCC
Confidence 357888999999999999988888754
No 212
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=89.07 E-value=0.084 Score=41.43 Aligned_cols=38 Identities=18% Similarity=0.097 Sum_probs=25.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 40 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 40 (130)
|+|+++.........|+..+.. .+.|+++|+||+|+..
T Consensus 195 VvDa~~~~~~~~~~~~l~~l~~--~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 195 LFDAHKLEISDEFSEAIGALRG--HEDKIRVVLNKADMVE 232 (550)
T ss_dssp EEETTSCCCCHHHHHHHHHTTT--CGGGEEEEEECGGGSC
T ss_pred EEeCCcCCCCHHHHHHHHHHHh--cCCCEEEEEECCCccC
Confidence 4677654344445566665543 3689999999999865
No 213
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=88.22 E-value=0.19 Score=35.27 Aligned_cols=38 Identities=3% Similarity=-0.086 Sum_probs=24.0
Q ss_pred CeecCcHHHHHhH-HHHHHHHHHhCC---CCcEEEEecCCCCC
Q 032950 1 MFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKVDVK 39 (130)
Q Consensus 1 V~d~~~~~s~~~~-~~~~~~~~~~~~---~~piilv~NK~Dl~ 39 (130)
|++++... |... ..|+..+..... ..|+++|+||+|+.
T Consensus 123 V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 123 VDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp EEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred EEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 34555433 4333 357776666432 24999999999985
No 214
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=88.18 E-value=0.13 Score=42.45 Aligned_cols=36 Identities=25% Similarity=0.246 Sum_probs=27.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCC
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 39 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 39 (130)
|||+++..++.....|..... .++|+++|+||+|+.
T Consensus 128 VvDa~~g~~~qt~~~~~~~~~---~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 128 VVDTIEGVCVQTETVLRQALG---ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEETTTBSCHHHHHHHHHHHH---TTCEEEEEEECHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHH---cCCCeEEEEECCCcc
Confidence 578887767776666764332 479999999999985
No 215
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=78.93 E-value=6.9 Score=29.04 Aligned_cols=41 Identities=10% Similarity=-0.027 Sum_probs=28.8
Q ss_pred CCCcEEEEecCCCCCC--cccCHHHHHHHHhcCCcEEEeccCC
Q 032950 25 ENIPIVLCGNKVDVKN--RQVKAKQVTFHRKKNLQYYEISAKS 65 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~--~~v~~~~~~~~~~~~~~~~e~Sak~ 65 (130)
...|+++++||.|..- .........++...+.+++.+||+.
T Consensus 198 t~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 198 TLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp TTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred cCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 3689999999998642 1111224567777788999999864
No 216
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=61.20 E-value=19 Score=26.78 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=33.7
Q ss_pred CCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032950 26 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
..|++++.||+|... .+..+...+ ...++.+|+..+.|++.+...+-+.+
T Consensus 249 ~~p~i~v~nKid~~~----~eele~l~~-~~~~~~is~~~e~gLd~Li~~~y~~L 298 (376)
T 4a9a_A 249 YMPAIYVLNKIDSLS----IEELELLYR-IPNAVPISSGQDWNLDELLQVMWDRL 298 (376)
T ss_dssp EECEEEEEECGGGSC----HHHHHHHTT-STTEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccceEEEEecccccC----HHHHHHHhc-ccchhhhhhhhcccchhHHHHHHHHc
Confidence 568999999999632 221222221 23478999999999998877665544
No 217
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=53.00 E-value=38 Score=26.48 Aligned_cols=71 Identities=17% Similarity=0.105 Sum_probs=46.0
Q ss_pred HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEec--cCCCCChHHHHHHHHHHHh
Q 032950 9 TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS--AKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 9 s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~S--ak~~~~v~~lf~~l~~~i~ 81 (130)
-|.++.+.++.+++ -++|+|+..|+..-.....-....++|.+.|..+..+. ++-|.|-.++-+.+++.+.
T Consensus 345 G~~NL~kHIen~~~--fGvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~~~~s~~wa~GG~G~~~LA~~Vv~~~e 417 (543)
T 3do6_A 345 GFKNLRVHVENLRK--FNLPVVVALNRFSTDTEKEIAYVVKECEKLGVRVAVSEVFKKGSEGGVELAKAVAEAAK 417 (543)
T ss_dssp HHHHHHHHHHHHHH--TTCCEEEEEECCTTCCHHHHHHHHHHHHTTTCEEEEECHHHHGGGGSHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHH--cCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHhc
Confidence 35566666666665 49999999999864211100114578888898765443 5777787777777776654
No 218
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=48.13 E-value=25 Score=25.51 Aligned_cols=51 Identities=6% Similarity=0.087 Sum_probs=38.2
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032950 25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
..+|+|+ .+|.+.. ..+..+.|++.+++.+.++..+...+..+..+|....
T Consensus 79 ~~~P~II-ltrg~~~----peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~ 129 (314)
T 1ko7_A 79 PETPAII-VTRDLEP----PEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHEL 129 (314)
T ss_dssp TTCCCEE-ECTTCCC----CHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHT
T ss_pred CCCCEEE-EeCCCCC----CHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhh
Confidence 4677664 5666653 4456788888999999999999988888887777653
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=45.82 E-value=12 Score=28.31 Aligned_cols=59 Identities=15% Similarity=0.132 Sum_probs=37.7
Q ss_pred CCcEEEEecCCCCC-------C-cccCHH-----HHHHH----HhcC---CcEEEecc--CCCCChHHHHHHHHHHHhcC
Q 032950 26 NIPIVLCGNKVDVK-------N-RQVKAK-----QVTFH----RKKN---LQYYEISA--KSNYNFEKPFLYLARKLAGD 83 (130)
Q Consensus 26 ~~piilv~NK~Dl~-------~-~~v~~~-----~~~~~----~~~~---~~~~e~Sa--k~~~~v~~lf~~l~~~i~~~ 83 (130)
+.|+++|.||.|+. . ...... ...++ .+.+ ...|.+|+ ..+.|++++.+.+.+.+...
T Consensus 175 ~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 175 KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 68999999999852 1 111111 12332 1222 24688999 66777999999998887554
Q ss_pred C
Q 032950 84 P 84 (130)
Q Consensus 84 ~ 84 (130)
+
T Consensus 255 ~ 255 (413)
T 1tq4_A 255 K 255 (413)
T ss_dssp G
T ss_pred h
Confidence 3
No 220
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=43.99 E-value=7.1 Score=30.28 Aligned_cols=51 Identities=10% Similarity=-0.027 Sum_probs=32.7
Q ss_pred CcE-EEEecCCCCCCcccCHHHHHHHHhcCCcE------------------EEeccCCCCC-hHHHHHHHHHH
Q 032950 27 IPI-VLCGNKVDVKNRQVKAKQVTFHRKKNLQY------------------YEISAKSNYN-FEKPFLYLARK 79 (130)
Q Consensus 27 ~pi-ilv~NK~Dl~~~~v~~~~~~~~~~~~~~~------------------~e~Sak~~~~-v~~lf~~l~~~ 79 (130)
+|+ ++|.||+|...+. . .........+.++ +.+|+..|.| +.++++.+.+.
T Consensus 240 ~~i~gvVlNK~D~~~~~-g-~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 240 VDVASVIVTKLDGHAKG-G-GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp HCCCCEEEECTTSCCCC-T-HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cCceEEEEeCCccccch-H-HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 575 8899999975422 1 1222333344332 3478999999 99998888765
No 221
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=40.76 E-value=11 Score=28.56 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=23.1
Q ss_pred CCCCcEEEEecCCCCCC-cccCHH---HHHHHHhcCCcEEEecc
Q 032950 24 CENIPIVLCGNKVDVKN-RQVKAK---QVTFHRKKNLQYYEISA 63 (130)
Q Consensus 24 ~~~~piilv~NK~Dl~~-~~v~~~---~~~~~~~~~~~~~e~Sa 63 (130)
..++|+|+|.||+|... ..+... ........|+++|.+|.
T Consensus 174 ~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 174 DSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp CSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred hhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 46899999999999754 221111 11212345666666664
No 222
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=35.41 E-value=55 Score=24.38 Aligned_cols=40 Identities=10% Similarity=0.055 Sum_probs=26.6
Q ss_pred CCcEEEEecCCCC--C-C-cccCHHHHHHHHhcC--CcEEEeccCC
Q 032950 26 NIPIVLCGNKVDV--K-N-RQVKAKQVTFHRKKN--LQYYEISAKS 65 (130)
Q Consensus 26 ~~piilv~NK~Dl--~-~-~~v~~~~~~~~~~~~--~~~~e~Sak~ 65 (130)
..|++.+.|+.|. . + ...-....+++.+.+ ..++.+||+.
T Consensus 224 ~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~ 269 (392)
T 1ni3_A 224 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAF 269 (392)
T ss_dssp GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred cCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHH
Confidence 6899999999983 1 1 111122456666655 6799999876
No 223
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=33.21 E-value=26 Score=20.59 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHc-CCCCCCCCC
Q 032950 104 AAQQQHEAELAAAA-SQPLPDDDD 126 (130)
Q Consensus 104 ~~~~~~~~~~~~~~-~~p~~~~~~ 126 (130)
.+..-.|-.+..|- -+|+|+|||
T Consensus 52 TNSELLCEAFLHA~TGQPLP~D~D 75 (104)
T 1cmb_A 52 TNSELLCEAFLHAFTGQPLPDDAD 75 (104)
T ss_dssp SHHHHHHHHHHHHHHCCCCCCGGG
T ss_pred ccHHHHHHHHHHHhcCCCCCCchh
Confidence 45567788888887 599999886
No 224
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=28.83 E-value=47 Score=26.09 Aligned_cols=71 Identities=11% Similarity=0.045 Sum_probs=44.0
Q ss_pred HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032950 9 TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 9 s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
-|.++.+.++.+++ -++|+|+..|+..-.... +.+ ..++|.+.|..+..+=++-|.|-.++-+.+++.+..
T Consensus 359 G~~NL~kHien~~~--fGvpvVVaiN~F~tDT~a-Ei~~v~~~~~~~G~~~~~~wa~GG~G~~~LA~~Vv~~~~~ 430 (557)
T 3pzx_A 359 GFANLEKHIENIGK--FGVPAVVAINAFPTDTEA-ELNLLYELCAKAGAEVALSWAKGGEGGLELARKVLQTLES 430 (557)
T ss_dssp HHHHHHHHHHHHHT--TTCCEEEEEECCTTCCHH-HHHHHHHHCCSSEEEEECHHHHGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--cCCCeEEEEeCCCCCCHH-HHHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHHhc
Confidence 34555555555555 499999999998642111 111 345666666654333366777888887777777754
No 225
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=28.72 E-value=53 Score=21.03 Aligned_cols=48 Identities=0% Similarity=-0.132 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHHh---CCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEE
Q 032950 11 KNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY 59 (130)
Q Consensus 11 ~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~ 59 (130)
..+..+++.+... .++.++.+|.|+++-.. .......+++.+++.+++
T Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~-~~~~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 112 FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA-TMLNVLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE-EEEHHHHHHHHHHTCCBC
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc-hHHHHHHHHHHHcCCcee
Confidence 3444445444433 24677899999998532 223334455555665554
No 226
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=28.42 E-value=21 Score=26.20 Aligned_cols=43 Identities=7% Similarity=-0.053 Sum_probs=25.3
Q ss_pred CCcEEEEecCCCCCCcc-cCHHHHHHHHhcCCcEEEeccCCCCC
Q 032950 26 NIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYN 68 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~~-v~~~~~~~~~~~~~~~~e~Sak~~~~ 68 (130)
+.|++++.||.|...+. .......+.+..|......++....+
T Consensus 274 ~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~l~p~~~~~~~~ 317 (369)
T 3ec1_A 274 RRSFVCYMANELTVHRTKLEKADSLYANQLGELLSPPSKRYAAE 317 (369)
T ss_dssp SEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTTBCSSCGGGTTT
T ss_pred CceEEEEecCCcccccccHHHHHHHHHHhcCCccCCCCchhhhh
Confidence 67999999999976522 22223345555665544444444333
No 227
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=26.32 E-value=81 Score=19.69 Aligned_cols=35 Identities=9% Similarity=0.124 Sum_probs=17.7
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEe
Q 032950 25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEI 61 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~ 61 (130)
....+|++++=+|- ..+......+|.+.+++|+.+
T Consensus 47 gkakLViiA~D~~p--~~~~~~l~~lc~~~~VP~~~v 81 (134)
T 2ale_A 47 GISEFIIMAADCEP--IEILLHLPLLCEDKNVPYVFV 81 (134)
T ss_dssp TCEEEEEEETTCSS--GGGGTHHHHHHHHHTCCEEEE
T ss_pred CCCeEEEEeCCCCH--HHHHHHHHHHHHhcCCCEEEE
Confidence 34555666655542 111223445666666666555
No 228
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=26.15 E-value=59 Score=24.73 Aligned_cols=40 Identities=8% Similarity=-0.031 Sum_probs=24.4
Q ss_pred cEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHH
Q 032950 28 PIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 71 (130)
Q Consensus 28 piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~ 71 (130)
+..+|.||.|...+. ..........+.|+..++. |+++++
T Consensus 241 i~gVIlTKlD~~~~g--G~~ls~~~~~g~PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 241 IGSIIVTKLDGSAKG--GGALSAVAATGAPIKFIGT--GEKIDD 280 (443)
T ss_dssp TEEEEEECCSSCSSH--HHHHHHHHTTCCCEEEEEC--SSSTTC
T ss_pred CeEEEEECCCCcccc--cHHHHHHHHHCCCEEEEEc--CCChHH
Confidence 456889999975321 1234455567888776764 555543
No 229
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=25.55 E-value=1.2e+02 Score=19.25 Aligned_cols=35 Identities=11% Similarity=0.215 Sum_probs=24.6
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEe
Q 032950 25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEI 61 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~ 61 (130)
...|+|++|.-+... ....+..+++...+++++.+
T Consensus 34 AkrPvil~G~g~~~~--~a~~~l~~lae~~~iPV~~t 68 (170)
T 3cf4_G 34 AKRPLLMVGTLALDP--ELLDRVVKISKAANIPIAAT 68 (170)
T ss_dssp CSSEEEEECSTTCCH--HHHHHHHHHHHHHTCCEEEC
T ss_pred CCCCEEEECCCccch--hHHHHHHHHHHHhCCCEEEC
Confidence 478999999987531 11223567888899998754
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=22.94 E-value=68 Score=22.70 Aligned_cols=43 Identities=7% Similarity=-0.036 Sum_probs=26.9
Q ss_pred CCc-EEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHH
Q 032950 26 NIP-IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 72 (130)
Q Consensus 26 ~~p-iilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~l 72 (130)
..+ ..+|.||+|...+. ......+...+.++..++ +|.+++++
T Consensus 238 ~~~i~gvVlnk~D~~~~~--g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 238 ASKIGTIIITKMDGTAKG--GGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp TCTTEEEEEECGGGCTTH--HHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred hCCCCEEEEeCCCCCcch--HHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 456 66889999964311 123456667788877766 56666543
No 231
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=22.73 E-value=1.6e+02 Score=19.09 Aligned_cols=52 Identities=8% Similarity=-0.010 Sum_probs=29.7
Q ss_pred HHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEE
Q 032950 7 RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY 59 (130)
Q Consensus 7 ~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~ 59 (130)
..++..+...++.+.... +.++.+|.|+++-.......+..++.++++.+++
T Consensus 102 ~~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~~~~~~~~~~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 102 ALALDALMLTIETLQKLG-NNRFRILLTIIPPYPSKDGDEARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHHHHHHHHHHTC-SSSEEEEECSBCCTTSCHHHHHHHHHHHTTCCBC
T ss_pred chhHHHHHHHHHHHHhcc-CCCEEEEEEecCCccchHHHHHHHHHHHcCCchh
Confidence 345666666666555432 5678899999986430122233444555666554
No 232
>2pd2_A Hypothetical protein ST0148; structural genomics, NPPSFA, national project on protein STR and functional analyses; 2.06A {Sulfolobus tokodaii}
Probab=21.53 E-value=1.2e+02 Score=17.46 Aligned_cols=34 Identities=6% Similarity=-0.075 Sum_probs=17.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEec
Q 032950 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 34 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~N 34 (130)
||++++++.+...-.+...+....++..+.++.+
T Consensus 4 v~~v~d~~~~~~al~~~~n~~~~~~~~~v~vv~~ 37 (108)
T 2pd2_A 4 VVQIKDFDKVPQALRSVINLYNDIKDAEIEVVLH 37 (108)
T ss_dssp EEEECCGGGHHHHHHHHHHHHHHSTTCEEEEEEC
T ss_pred EEEeCChHHHHHHHHHHHHHHhhCCCCeEEEEEc
Confidence 4677777665555444444444334444444433
No 233
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=21.46 E-value=1.1e+02 Score=22.05 Aligned_cols=51 Identities=8% Similarity=0.006 Sum_probs=35.8
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032950 25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
.++|+|++..-... +.+..+.|++.+++.|.+.-.+-.=+..+...|....
T Consensus 82 ~~iP~IIvtrg~~p-----p~elie~A~e~~ipLl~T~~~t~~~~~~L~~~l~~~l 132 (312)
T 1knx_A 82 LNPPAIILTKSFTD-----PTVLLQVNQTYQVPILKTDFFSTELSFTVETYINEQF 132 (312)
T ss_dssp TCCSCEEEETTTCC-----CHHHHHHGGGTCCCEEEESSCGGGGTTTHHHHHHHHT
T ss_pred CCCCEEEEECCCCC-----CHHHHHHHHHcCCEEEEeCccHHHHHHHHHHHHHHHh
Confidence 58888887665543 4566788999999999877665555556666565554
Done!