Query 032952
Match_columns 130
No_of_seqs 107 out of 527
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 12:49:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032952.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032952hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qai_A V-type ATP synthase sub 100.0 8.1E-33 2.8E-37 197.9 7.9 100 13-126 1-103 (111)
2 3aon_B V-type sodium ATPase su 100.0 9.3E-33 3.2E-37 198.4 8.3 102 13-127 3-105 (115)
3 2d00_A V-type ATP synthase sub 100.0 2E-32 6.8E-37 194.8 7.3 100 12-124 3-107 (109)
4 2ov6_A V-type ATP synthase sub 100.0 2.4E-31 8.2E-36 186.8 -2.1 97 13-125 1-100 (101)
5 2i4r_A V-type ATP synthase sub 99.9 3.5E-28 1.2E-32 171.4 7.0 92 12-119 9-102 (102)
6 2fp4_B Succinyl-COA ligase [GD 83.6 6.2 0.00021 32.5 8.8 100 13-125 264-376 (395)
7 2nu8_B SCS-beta, succinyl-COA 80.0 5.9 0.0002 32.5 7.4 100 13-125 257-369 (388)
8 3ufx_B Succinyl-COA synthetase 75.9 9.3 0.00032 31.4 7.5 83 12-100 247-342 (397)
9 2q5c_A NTRC family transcripti 74.9 8.3 0.00028 28.4 6.4 85 12-121 94-182 (196)
10 3i09_A Periplasmic branched-ch 73.6 19 0.00066 27.4 8.4 80 12-97 4-101 (375)
11 4f06_A Extracellular ligand-bi 73.1 17 0.00059 28.0 8.1 81 13-99 6-104 (371)
12 3n0w_A ABC branched chain amin 72.9 22 0.00077 27.2 8.7 83 10-98 4-104 (379)
13 4evq_A Putative ABC transporte 71.6 18 0.00061 27.4 7.8 89 6-97 10-112 (375)
14 2pju_A Propionate catabolism o 71.1 31 0.0011 26.1 9.1 83 12-120 106-192 (225)
15 3lop_A Substrate binding perip 69.9 31 0.0011 26.1 8.8 85 11-98 4-106 (364)
16 4gnr_A ABC transporter substra 68.9 35 0.0012 25.7 10.1 82 11-98 6-106 (353)
17 3lkb_A Probable branched-chain 65.5 39 0.0014 25.8 8.7 80 11-96 6-103 (392)
18 4eyg_A Twin-arginine transloca 64.8 42 0.0014 25.2 8.8 85 11-98 5-103 (368)
19 3eaf_A ABC transporter, substr 63.8 48 0.0016 25.5 9.5 82 12-96 4-104 (391)
20 3n0x_A Possible substrate bind 62.2 50 0.0017 25.2 8.8 83 12-97 4-103 (374)
21 4h08_A Putative hydrolase; GDS 60.3 39 0.0013 23.3 7.9 71 12-89 20-106 (200)
22 3sg0_A Extracellular ligand-bi 60.0 52 0.0018 24.7 8.3 85 10-98 25-120 (386)
23 2lqo_A Putative glutaredoxin R 58.9 13 0.00043 24.2 4.0 67 53-124 18-87 (92)
24 2p2s_A Putative oxidoreductase 57.8 61 0.0021 24.8 8.6 55 59-118 58-115 (336)
25 3h5l_A Putative branched-chain 55.0 41 0.0014 26.1 7.1 84 10-96 12-112 (419)
26 3td9_A Branched chain amino ac 52.7 71 0.0024 24.0 9.1 86 11-99 15-113 (366)
27 3hut_A Putative branched-chain 48.1 83 0.0028 23.5 9.5 84 11-97 3-102 (358)
28 3i45_A Twin-arginine transloca 47.7 90 0.0031 23.7 8.2 84 11-99 4-105 (387)
29 3ipc_A ABC transporter, substr 46.3 89 0.003 23.3 9.4 78 13-97 3-99 (356)
30 3uf6_A LMO1369 protein; struct 46.1 1.1E+02 0.0036 24.1 8.4 81 12-104 43-131 (291)
31 2csu_A 457AA long hypothetical 44.8 1.2E+02 0.0043 24.9 8.8 58 42-99 343-412 (457)
32 3k4h_A Putative transcriptiona 44.1 58 0.002 23.6 6.1 89 7-97 3-98 (292)
33 2dvm_A Malic enzyme, 439AA lon 39.7 66 0.0023 26.9 6.3 56 8-73 59-134 (439)
34 3l07_A Bifunctional protein fo 39.6 49 0.0017 26.3 5.3 55 15-76 39-101 (285)
35 3kto_A Response regulator rece 39.0 62 0.0021 20.5 5.0 76 12-99 6-88 (136)
36 3p2o_A Bifunctional protein fo 38.5 47 0.0016 26.3 5.0 55 15-76 38-100 (285)
37 3saj_A Glutamate receptor 1; r 38.2 1.3E+02 0.0045 23.0 8.6 82 11-96 9-96 (384)
38 3mwd_A ATP-citrate synthase; A 37.6 95 0.0033 25.8 7.0 84 41-127 302-405 (425)
39 1dbq_A Purine repressor; trans 36.7 1.2E+02 0.004 21.8 6.7 89 8-97 3-93 (289)
40 3l6u_A ABC-type sugar transpor 36.3 1.2E+02 0.0041 21.8 6.9 90 7-97 3-95 (293)
41 3rc1_A Sugar 3-ketoreductase; 35.2 1.5E+02 0.0053 22.8 8.5 56 59-119 81-139 (350)
42 3rst_A Signal peptide peptidas 35.0 70 0.0024 23.9 5.4 50 51-100 30-88 (240)
43 3egc_A Putative ribose operon 34.9 95 0.0033 22.5 6.0 88 7-97 3-93 (291)
44 4a5o_A Bifunctional protein fo 34.8 63 0.0021 25.7 5.2 54 15-75 40-101 (286)
45 3q2i_A Dehydrogenase; rossmann 34.0 1.5E+02 0.0053 22.7 7.4 55 59-118 67-124 (354)
46 3k9c_A Transcriptional regulat 30.1 51 0.0017 24.2 3.8 91 3-97 3-94 (289)
47 3pff_A ATP-citrate synthase; p 30.0 94 0.0032 28.2 6.1 83 41-126 302-404 (829)
48 2pr7_A Haloacid dehalogenase/e 29.9 71 0.0024 20.0 4.1 40 13-64 92-132 (137)
49 2i6x_A Hydrolase, haloacid deh 29.8 26 0.00089 24.0 2.0 41 12-64 167-208 (211)
50 3nv9_A Malic enzyme; rossmann 29.3 70 0.0024 27.5 4.9 73 7-89 85-183 (487)
51 3b48_A Uncharacterized protein 29.1 1.4E+02 0.0047 20.4 6.1 52 68-119 6-61 (135)
52 2hk9_A Shikimate dehydrogenase 28.8 76 0.0026 23.9 4.6 57 10-76 10-74 (275)
53 2hz5_A Dynein light chain 2A, 28.6 33 0.0011 23.3 2.3 25 52-76 11-36 (106)
54 3bil_A Probable LACI-family tr 28.3 1.9E+02 0.0066 21.8 8.8 76 10-93 182-268 (348)
55 3dv9_A Beta-phosphoglucomutase 27.8 90 0.0031 21.5 4.6 25 11-35 181-206 (247)
56 3h5i_A Response regulator/sens 27.2 96 0.0033 19.7 4.4 44 56-101 39-88 (140)
57 4h3v_A Oxidoreductase domain p 27.2 90 0.0031 23.8 4.9 59 59-119 67-125 (390)
58 3e3m_A Transcriptional regulat 27.2 2E+02 0.0068 21.6 7.1 88 8-97 66-155 (355)
59 2d59_A Hypothetical protein PH 26.9 62 0.0021 22.2 3.6 52 59-119 71-123 (144)
60 3clk_A Transcription regulator 25.9 1.1E+02 0.0038 22.1 5.0 89 7-97 3-94 (290)
61 3mwd_B ATP-citrate synthase; A 25.6 2.6E+02 0.0088 22.3 7.8 85 13-104 169-264 (334)
62 1mio_B Nitrogenase molybdenum 25.4 2.4E+02 0.0082 23.0 7.4 58 11-77 311-374 (458)
63 3huu_A Transcription regulator 25.2 1.5E+02 0.0051 21.7 5.7 89 7-97 17-112 (305)
64 3o74_A Fructose transport syst 25.0 1.8E+02 0.0063 20.4 6.9 80 10-89 118-203 (272)
65 3j21_Z 50S ribosomal protein L 24.8 74 0.0025 20.6 3.4 46 53-102 21-68 (99)
66 1pea_A Amidase operon; gene re 24.8 2.3E+02 0.0077 21.4 10.0 84 11-97 6-105 (385)
67 2wm8_A MDP-1, magnesium-depend 24.6 1.4E+02 0.0049 20.3 5.2 43 13-64 138-181 (187)
68 3hcw_A Maltose operon transcri 24.3 2.1E+02 0.007 20.8 6.4 84 9-93 128-219 (295)
69 3hs3_A Ribose operon repressor 24.2 1.9E+02 0.0066 20.7 6.1 83 7-97 5-91 (277)
70 1qgu_B Protein (nitrogenase mo 24.2 1.6E+02 0.0053 24.8 6.1 46 11-65 359-408 (519)
71 3l7h_A RE64145P, roadblock; LC 24.1 38 0.0013 22.6 1.9 24 53-76 3-27 (97)
72 1y7p_A Hypothetical protein AF 24.0 1E+02 0.0036 23.7 4.6 80 12-95 87-175 (223)
73 3snr_A Extracellular ligand-bi 23.8 1.7E+02 0.0059 21.4 5.8 84 11-98 6-100 (362)
74 2prs_A High-affinity zinc upta 23.8 29 0.00099 26.7 1.4 39 48-87 205-243 (284)
75 2pbq_A Molybdenum cofactor bio 23.3 2E+02 0.0069 20.4 6.0 23 52-74 53-75 (178)
76 3dnf_A ISPH, LYTB, 4-hydroxy-3 23.0 45 0.0015 26.7 2.4 23 4-26 105-129 (297)
77 3ct6_A PTS-dependent dihydroxy 22.9 1.9E+02 0.0064 19.8 6.8 51 68-119 3-56 (131)
78 3u26_A PF00702 domain protein; 22.7 1.4E+02 0.0047 20.3 4.8 24 11-34 171-196 (234)
79 1lc0_A Biliverdin reductase A; 22.3 1.6E+02 0.0054 22.3 5.4 56 58-118 56-114 (294)
80 3ngj_A Deoxyribose-phosphate a 22.2 1.7E+02 0.0059 22.4 5.6 59 44-103 34-92 (239)
81 1pq4_A Periplasmic binding pro 21.9 62 0.0021 24.9 3.0 38 48-86 219-256 (291)
82 2d5c_A AROE, shikimate 5-dehyd 21.9 81 0.0028 23.4 3.6 43 13-64 2-52 (263)
83 3nkl_A UDP-D-quinovosamine 4-d 21.7 1.3E+02 0.0046 19.5 4.4 47 53-101 55-101 (141)
84 3kjx_A Transcriptional regulat 21.5 2.6E+02 0.0088 20.8 8.1 88 8-97 64-153 (344)
85 3c3k_A Alanine racemase; struc 21.4 2.3E+02 0.0079 20.3 7.5 87 7-97 3-92 (285)
86 1nvt_A Shikimate 5'-dehydrogen 21.2 82 0.0028 23.8 3.5 52 13-74 12-71 (287)
87 3hcw_A Maltose operon transcri 21.2 2.4E+02 0.0082 20.4 6.4 86 10-97 5-97 (295)
88 3kzx_A HAD-superfamily hydrola 21.2 1.7E+02 0.0059 19.9 5.0 22 14-35 179-201 (231)
89 1w4v_A Thioredoxin, mitochondr 21.1 1.6E+02 0.0053 18.4 4.5 66 53-121 47-119 (119)
90 4had_A Probable oxidoreductase 21.1 1.4E+02 0.0048 22.7 4.9 58 59-118 78-135 (350)
91 3jy6_A Transcriptional regulat 21.1 2.3E+02 0.0079 20.2 8.6 84 10-97 5-91 (276)
92 2b7e_A PRE-mRNA processing pro 21.0 29 0.001 21.4 0.7 17 53-69 3-19 (59)
93 3gyb_A Transcriptional regulat 20.9 2E+02 0.0069 20.4 5.5 80 10-89 116-199 (280)
94 3u3x_A Oxidoreductase; structu 20.7 1.9E+02 0.0066 22.4 5.7 58 59-118 80-137 (361)
95 4gqa_A NAD binding oxidoreduct 20.7 1.4E+02 0.0048 23.5 4.9 58 59-118 88-145 (412)
96 3g85_A Transcriptional regulat 20.4 2.4E+02 0.0082 20.1 5.9 83 10-93 125-215 (289)
97 1w2f_A Inositol-trisphosphate 20.2 66 0.0022 25.3 2.8 40 23-65 141-180 (276)
98 2x7x_A Sensor protein; transfe 20.1 2.7E+02 0.0092 20.5 7.3 87 10-97 4-93 (325)
No 1
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=99.98 E-value=8.1e-33 Score=197.88 Aligned_cols=100 Identities=33% Similarity=0.493 Sum_probs=83.1
Q ss_pred cEEEEEechhhHHHHHHhcccccccCCcceeEE-ecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHH--HHHhhcC
Q 032952 13 ALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLI-VDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIR--FLVDSHN 89 (130)
Q Consensus 13 ~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~v-~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~--~~i~~~~ 89 (130)
+|||||||+||++||||+|++++ ++ ++++|+.+|++++|+++++++|||||+|||++++.++ +.++
T Consensus 1 MKIaVIGD~Dtv~GFrLaGi~~~--------~v~~~~~t~~ee~~~~~~~l~~~~digIIlIte~ia~~i~~~~~i~--- 69 (111)
T 2qai_A 1 MKIVVMGDSDTVVGFRLAGVHEA--------YEYDESLESVERARNKLRELLERDDVGIILITERLAQRIGSLPEVK--- 69 (111)
T ss_dssp CEEEEEECHHHHHHHHHHTCSEE--------EECCSSHHHHHHHHHHHHHHHTCTTEEEEEEEHHHHHHHCSCCCCS---
T ss_pred CEEEEEECHHHHHHHHHcCCceE--------EEecCCCCCHHHHHHHHHHHhhCCCeEEEEEcHHHHhhcccccccC---
Confidence 58999999999999999999885 55 8888999999999999999999999999999999999 7666
Q ss_pred CCccEEEEcCCCCCCCChhhHHHHHHHHhhcccCCcc
Q 032952 90 KPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESVA 126 (130)
Q Consensus 90 ~~~P~Iv~IPs~~g~~~~~~d~I~~~Vk~aiGidi~~ 126 (130)
.|+|++|||+.|+++ ++++|+++|++|+|+|+..
T Consensus 70 --~P~IleIPs~~g~~~-~~d~i~~~V~~aiG~di~~ 103 (111)
T 2qai_A 70 --FPIILQIPDKFGSIY-GEDILRDVVRRAIGVELKR 103 (111)
T ss_dssp --SSEEEEECTTC-------CTHHHHHHHHC------
T ss_pred --CCEEEEECCCCCCCc-hHHHHHHHHHHHhChhHHh
Confidence 999999999999999 7899999999999999864
No 2
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=99.98 E-value=9.3e-33 Score=198.43 Aligned_cols=102 Identities=20% Similarity=0.298 Sum_probs=91.8
Q ss_pred cEEEEEechhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHHhhcC-CC
Q 032952 13 ALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHN-KP 91 (130)
Q Consensus 13 ~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~~-~~ 91 (130)
+|||||||+||++||||+|+++ |+|.+ .+|++++|++++++ |||||+|||++++.+++.|++|+ +.
T Consensus 3 mKiaVIGD~Dtv~GFrLaGie~--------~~v~~----~ee~~~~~~~l~~~-digIIlIte~ia~~i~~~i~~~~~~~ 69 (115)
T 3aon_B 3 YKIGVVGDKDSVSPFRLFGFDV--------QHGTT----KTEIRKTIDEMAKN-EYGVIYITEQCANLVPETIERYKGQL 69 (115)
T ss_dssp EEEEEESCHHHHGGGGGGTCEE--------ECCCS----HHHHHHHHHHHHHT-TEEEEEEEHHHHTTCHHHHHHHHTSS
T ss_pred eEEEEEECHHHHHHHHHcCCeE--------EEeCC----HHHHHHHHHHHHhc-CceEEEEeHHHHHHhHHHHHHHhCCC
Confidence 6999999999999999999954 66655 49999999999988 99999999999999999999996 56
Q ss_pred ccEEEEcCCCCCCCChhhHHHHHHHHhhcccCCccc
Q 032952 92 IPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESVAS 127 (130)
Q Consensus 92 ~P~Iv~IPs~~g~~~~~~d~I~~~Vk~aiGidi~~~ 127 (130)
.|+|++|||++|++++++++|+++|++|||+||...
T Consensus 70 ~P~IveIPs~~g~~~~~~~~i~~~V~~aiG~di~~~ 105 (115)
T 3aon_B 70 TPAIILIPSHQGTLGIGLEEIQNSVEKAVGQNILSG 105 (115)
T ss_dssp SCEEEEECBTTBCCSHHHHHHHHHHHHHTTCC----
T ss_pred CCEEEEECCCCCCCCccHHHHHHHHHHHhCcceEec
Confidence 999999999999999899999999999999999743
No 3
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=99.97 E-value=2e-32 Score=194.83 Aligned_cols=100 Identities=19% Similarity=0.299 Sum_probs=93.4
Q ss_pred ccEEEEEechhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHHhhcC--
Q 032952 12 SALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHN-- 89 (130)
Q Consensus 12 ~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~~-- 89 (130)
.+|||||||+||++||||+|+++ |+|.+ .+|++++|+++++++|||||+|||++++.+++.+++|+
T Consensus 3 ~mkiaVIgD~dtv~GFrLaGi~~--------~~v~~----~ee~~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~~~~ 70 (109)
T 2d00_A 3 PVRMAVIADPETAQGFRLAGLEG--------YGASS----AEEAQSLLETLVERGGYALVAVDEALLPDPERAVERLMRG 70 (109)
T ss_dssp CCCEEEEECHHHHHHHHHTTSEE--------EECSS----HHHHHHHHHHHHHHCCCSEEEEETTTCSCHHHHHHHHTTC
T ss_pred ccEEEEEeCHHHHHHHHHcCCeE--------EEeCC----HHHHHHHHHHHhhCCCeEEEEEeHHHHHhhHHHHHHHHhC
Confidence 47999999999999999999954 77755 49999999999999999999999999999999999994
Q ss_pred CCccEEEEcCCCC---CCCChhhHHHHHHHHhhcccCC
Q 032952 90 KPIPAILEIPSKD---HPYDPAQDSVLSRVKNLVSVES 124 (130)
Q Consensus 90 ~~~P~Iv~IPs~~---g~~~~~~d~I~~~Vk~aiGidi 124 (130)
+..|+|++|||++ |++ .++++|+++|++|+|+||
T Consensus 71 ~~~P~Il~IPs~~~~~g~~-~~~~~i~~~V~~aiG~di 107 (109)
T 2d00_A 71 RDLPVLLPIAGLKEAFQGH-DVEGYMRELVRKTIGFDI 107 (109)
T ss_dssp CCCCEEEEESCGGGGGSSS-CHHHHHHHHHHHHHSCCC
T ss_pred CCCeEEEEECCCcccCCCc-chHHHHHHHHHHHhCCcc
Confidence 8899999999999 999 789999999999999998
No 4
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}
Probab=99.96 E-value=2.4e-31 Score=186.78 Aligned_cols=97 Identities=21% Similarity=0.338 Sum_probs=88.2
Q ss_pred cEEEEEechhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHH-hhcC-C
Q 032952 13 ALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLV-DSHN-K 90 (130)
Q Consensus 13 ~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~i-~~~~-~ 90 (130)
+|||||||+||++||||+|++++ |+|.++ +|++++|+++++++|||||+|||++++.+++.+ +.+. +
T Consensus 1 MkiaVIGD~dtv~GFrLaGi~~v-------~~v~~~----ee~~~~~~~l~~~~digIIlite~~a~~i~~~i~~~~~~~ 69 (101)
T 2ov6_A 1 MELAVIGKSEFVTGFRLAGISKV-------YETPDI----PATESAVRSVLEDKSVGILVMHNDDIGNLPEVLRKNLNES 69 (101)
T ss_dssp CCEEEEECHHHHHHHHHHTCCEE-------EECCST----TTHHHHHHHHHHHTSSSEEEEEHHHHTTCTTTTHHHHHHH
T ss_pred CEEEEEECHHHHHHHHHcCCCce-------EecCCH----HHHHHHHHHHhhCCCeEEEEEcHHHHHHhHHHHHHHHhCC
Confidence 48999999999999999999987 777665 999999999999999999999999999999999 5554 7
Q ss_pred CccEEEEcCCCC-CCCChhhHHHHHHHHhhcccCCc
Q 032952 91 PIPAILEIPSKD-HPYDPAQDSVLSRVKNLVSVESV 125 (130)
Q Consensus 91 ~~P~Iv~IPs~~-g~~~~~~d~I~~~Vk~aiGidi~ 125 (130)
..|+|++|||++ |+ ++|+++|++|+|+||.
T Consensus 70 ~~P~Iv~IP~~~~~~-----~~i~~~v~~aiG~di~ 100 (101)
T 2ov6_A 70 VQPTVVALGGSGSGS-----TSLREKIKQAVGVDLW 100 (101)
T ss_dssp CCSCEEEECTTSSCC-----CCCCCCCSGGGHHHHH
T ss_pred CCcEEEEECCCCCCh-----hHHHHHHHHHhChHhc
Confidence 999999999999 43 7899999999999874
No 5
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=99.95 E-value=3.5e-28 Score=171.42 Aligned_cols=92 Identities=18% Similarity=0.450 Sum_probs=69.9
Q ss_pred ccEEEEEechhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHHhhcCC-
Q 032952 12 SALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNK- 90 (130)
Q Consensus 12 ~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~~~- 90 (130)
+.-+|||||+||++||||+||+++ +.+.+ .+|++++|+++++++|||||+|||++++++++.|++|+.
T Consensus 9 ~~~~aVIGD~Dtv~GFrLaGi~~~-------~~~~~----~ee~~~~~~~l~~~~digIIlIte~ia~~i~~~i~~~~~~ 77 (102)
T 2i4r_A 9 SHMLAVVGDPDFTIGFMLAGISDI-------YEVTS----DEEIVKAVEDVLKRDDVGVVIMKQEYLKKLPPVLRREIDE 77 (102)
T ss_dssp CCEEEEEECHHHHHHHHHTTCCCE-------EECCS----HHHHHHHHHHHHHCSSEEEEEEEGGGSTTSCHHHHTTTTT
T ss_pred ceeEEEEcCHHHHHHHHHcCCCcc-------cCCCC----HHHHHHHHHHHhhCCCeEEEEEeHHHHHHHHHHHHHHHhC
Confidence 467999999999999999999885 21444 499999999999999999999999999999999999974
Q ss_pred -CccEEEEcCCCCCCCChhhHHHHHHHHhh
Q 032952 91 -PIPAILEIPSKDHPYDPAQDSVLSRVKNL 119 (130)
Q Consensus 91 -~~P~Iv~IPs~~g~~~~~~d~I~~~Vk~a 119 (130)
.+|+||+|||+.|+ ..++++|+||
T Consensus 78 ~~~P~IieIPs~~g~-----~~i~~~V~rA 102 (102)
T 2i4r_A 78 KVEPTFVSVGGTGGV-----EEIREKIRKA 102 (102)
T ss_dssp CCSSEEEEEC--------------------
T ss_pred CCccEEEEECCCCCC-----ccHHhHhhcC
Confidence 89999999999998 3688898886
No 6
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=83.63 E-value=6.2 Score=32.53 Aligned_cols=100 Identities=17% Similarity=0.250 Sum_probs=65.3
Q ss_pred cEEEEEechh--hHH---HHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEe--------hhhHH
Q 032952 13 ALIAMIADED--TVV---GFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLIS--------QYVAN 79 (130)
Q Consensus 13 ~kIaVIGD~d--tv~---GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIt--------e~~a~ 79 (130)
-+|+++++-- .+. -..+.|-+ -.||+=..-..+.+.+.++|+-+++++++-.||++ +.+++
T Consensus 264 G~Ig~~~nGaGlam~t~D~i~~~Gg~------paNflDvgG~a~~e~~~~al~~il~d~~v~~ilvni~ggi~~~d~vA~ 337 (395)
T 2fp4_B 264 GNIACFVNGAGLAMATCDIIFLNGGK------PANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIAN 337 (395)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHTTCC------BCEEEECCSSCCHHHHHHHHHHHHHCTTCCEEEEEEEESSSCHHHHHH
T ss_pred CeEEEEecCchHHHHHHHHHHHcCCC------cCCcEEECCCCCHHHHHHHHHHHhCCCCCCEEEEEecCCccCcHHHHH
Confidence 3788888831 111 23445543 34788667677889999999999999998888863 44666
Q ss_pred HHHHHHhhcCCCccEEEEcCCCCCCCChhhHHHHHHHHhhcccCCc
Q 032952 80 RIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 125 (130)
Q Consensus 80 ~i~~~i~~~~~~~P~Iv~IPs~~g~~~~~~d~I~~~Vk~aiGidi~ 125 (130)
-|-+.+.++....|+||-+-+.+ .+.-++.++++ |+.++
T Consensus 338 gii~a~~~~~~~~Pivvrl~G~n------~~~g~~~L~~~-gl~~~ 376 (395)
T 2fp4_B 338 GITKACRELELKVPLVVRLEGTN------VHEAQNILTNS-GLPIT 376 (395)
T ss_dssp HHHHHHHHHTCCSCEEEEEEETT------HHHHHHHHHHT-CSCCE
T ss_pred HHHHHHHhcCCCCeEEEEcCCCC------HHHHHHHHHHC-CCceE
Confidence 66666666556789999764322 13344555443 66665
No 7
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=80.04 E-value=5.9 Score=32.49 Aligned_cols=100 Identities=18% Similarity=0.278 Sum_probs=66.4
Q ss_pred cEEEEEechh-----hHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEe--------hhhHH
Q 032952 13 ALIAMIADED-----TVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLIS--------QYVAN 79 (130)
Q Consensus 13 ~kIaVIGD~d-----tv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIt--------e~~a~ 79 (130)
-+|+++++-- |.--..+.|.+ -.||+=..-..+.+.+.++|+-+++++++-.||++ +.+++
T Consensus 257 G~Ig~~~nGaGl~m~t~D~i~~~Gg~------~aNflD~gG~a~~~~~~~~~~~il~d~~v~~ilvni~ggi~~~~~vA~ 330 (388)
T 2nu8_B 257 GNIGCMVNGAGLAMGTMDIVKLHGGE------PANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIAD 330 (388)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHTTCC------BCEEEECCSCCCHHHHHHHHHHHHTSTTCCEEEEEEESCSSCHHHHHH
T ss_pred CEEEEEeCCCchhhhhhHHHHHcCCC------cCceeEecCCCCHHHHHHHHHHHhcCCCCCEEEEEecCCcCCchHHHH
Confidence 4788888732 22234555543 34788666677889999999999998998888773 46676
Q ss_pred HHHHHHhhcCCCccEEEEcCCCCCCCChhhHHHHHHHHhhcccCCc
Q 032952 80 RIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVESV 125 (130)
Q Consensus 80 ~i~~~i~~~~~~~P~Iv~IPs~~g~~~~~~d~I~~~Vk~aiGidi~ 125 (130)
-|-+.+.++....|+||-+.+.+ .+.-++.+++. |+.+.
T Consensus 331 gii~a~~~~~~~~pivvrl~G~n------~~~g~~~l~~~-g~~~~ 369 (388)
T 2nu8_B 331 GIIGAVAEVGVNVPVVVRLEGNN------AELGAKKLADS-GLNII 369 (388)
T ss_dssp HHHHHHHHHTCCSCEEEEEESTT------HHHHHHHHHTT-CSSEE
T ss_pred HHHHHHHhcCCCCeEEEEeCCCC------HHHHHHHHHHC-CCcee
Confidence 66666666556789999774422 23445555543 66555
No 8
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=75.92 E-value=9.3 Score=31.42 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=57.7
Q ss_pred ccEEEEEechhh-----HHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEE--------ehhhH
Q 032952 12 SALIAMIADEDT-----VVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLI--------SQYVA 78 (130)
Q Consensus 12 ~~kIaVIGD~dt-----v~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlI--------te~~a 78 (130)
.-+|++|++.-- .--....|.+ -.||+-.....+.+.+.++|+.+++++++-.|++ ++.++
T Consensus 247 ~g~I~ii~Ng~Gl~~~t~D~i~~~G~~------~aN~lD~gG~a~~e~~~~al~~~l~d~~v~~ilv~i~ggi~~~~~vA 320 (397)
T 3ufx_B 247 DGNIGIIGNGAGLVMYTLDLVNRVGGK------PANFLDIGGGAKADVVYNALKVVLKDPDVKGVFINIFGGITRADEVA 320 (397)
T ss_dssp SSSEEEEESSHHHHHHHHHHHHHTTCC------BSEEEECCSCCCHHHHHHHHHHHHTCTTCCEEEEEEEEEEEESHHHH
T ss_pred CCcEEEEecCccHHHHHHHHHHHcCCC------cCCcEecCCCCCHHHHHHHHHHHHcCCCCCEEEEECCCCCCCHHHHH
Confidence 358999999521 1123334543 3578877777788999999999999988766655 14577
Q ss_pred HHHHHHHhhcCCCccEEEEcCC
Q 032952 79 NRIRFLVDSHNKPIPAILEIPS 100 (130)
Q Consensus 79 ~~i~~~i~~~~~~~P~Iv~IPs 100 (130)
+.|-+.+.+++...|+|+-..+
T Consensus 321 ~~i~~a~~~~~~~kPvvv~~~G 342 (397)
T 3ufx_B 321 KGVIRALEEGLLTKPVVMRVAG 342 (397)
T ss_dssp HHHHHHHTTTCCCSCEEEEEEE
T ss_pred HHHHHHHHhhCCCCcEEEEccC
Confidence 7776666655457999997765
No 9
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=74.93 E-value=8.3 Score=28.44 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=56.4
Q ss_pred ccEEEEEechhhHHHHH----HhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHHhh
Q 032952 12 SALIAMIADEDTVVGFL----LAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDS 87 (130)
Q Consensus 12 ~~kIaVIGD~dtv~GFr----LaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~i~~ 87 (130)
..|||++|=+..+.|++ +.|++-. -|...++ +|+++.++++. ++.+.+|+=..-..+..++
T Consensus 94 ~~kIavvg~~~~~~~~~~~~~ll~~~i~------~~~~~~~----~e~~~~i~~l~-~~G~~vvVG~~~~~~~A~~---- 158 (196)
T 2q5c_A 94 GNELALIAYKHSIVDKHEIEAMLGVKIK------EFLFSSE----DEITTLISKVK-TENIKIVVSGKTVTDEAIK---- 158 (196)
T ss_dssp CSEEEEEEESSCSSCHHHHHHHHTCEEE------EEEECSG----GGHHHHHHHHH-HTTCCEEEECHHHHHHHHH----
T ss_pred CCcEEEEeCcchhhHHHHHHHHhCCceE------EEEeCCH----HHHHHHHHHHH-HCCCeEEECCHHHHHHHHH----
Confidence 36999999999888876 3566422 1445444 89999999887 5788886654444333332
Q ss_pred cCCCccEEEEcCCCCCCCChhhHHHHHHHHhhcc
Q 032952 88 HNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVS 121 (130)
Q Consensus 88 ~~~~~P~Iv~IPs~~g~~~~~~d~I~~~Vk~aiG 121 (130)
..+|.++-- .+.++|++.+++|+-
T Consensus 159 --~Gl~~vli~--------sg~eSI~~Ai~eA~~ 182 (196)
T 2q5c_A 159 --QGLYGETIN--------SGEESLRRAIEEALN 182 (196)
T ss_dssp --TTCEEEECC--------CCHHHHHHHHHHHHH
T ss_pred --cCCcEEEEe--------cCHHHHHHHHHHHHH
Confidence 447766632 125789988888753
No 10
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=73.62 E-value=19 Score=27.44 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=52.6
Q ss_pred ccEEEEEec----------hhhHHHHHHh------cccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEE--
Q 032952 12 SALIAMIAD----------EDTVVGFLLA------GVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLI-- 73 (130)
Q Consensus 12 ~~kIaVIGD----------~dtv~GFrLa------Gi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlI-- 73 (130)
.-||+++.. .+...|++++ |+.+ ++-.+++.|...+++...+.+++|+.++.+-.|+-
T Consensus 4 ~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~~ggi~G----~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~~ 79 (375)
T 3i09_A 4 SVKIGFITDMSGLYADIDGQGGLEAIKMAVADFGGKVNG----KPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGGT 79 (375)
T ss_dssp SEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHHTSEETT----EEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEECS
T ss_pred CeEEEEEeCCCcccccccCHHHHHHHHHHHHHhCCCCCC----eEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECCC
Confidence 467888865 2456777776 3433 22335566666677889999999997667766653
Q ss_pred ehhhHHHHHHHHhhcCCCccEEEE
Q 032952 74 SQYVANRIRFLVDSHNKPIPAILE 97 (130)
Q Consensus 74 te~~a~~i~~~i~~~~~~~P~Iv~ 97 (130)
+......+.+.+++ ...|.|..
T Consensus 80 ~s~~~~a~~~~~~~--~~ip~i~~ 101 (375)
T 3i09_A 80 NSATALSMNQVAAE--KKKVYINI 101 (375)
T ss_dssp CHHHHHHHHHHHHH--HTCEEEEC
T ss_pred CcHHHHHHHHHHHH--cCceEEEe
Confidence 45556666676666 34787775
No 11
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=73.10 E-value=17 Score=27.98 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=54.3
Q ss_pred cEEEEEec---------hhhHHHHHHh------cccccccCCcceeEEecCC-CcHHHHHHHHHHHhcCCCeeEEE--Ee
Q 032952 13 ALIAMIAD---------EDTVVGFLLA------GVGNVDLRRKTNYLIVDSK-TTIKQIEDAFKEFTSREDIAIVL--IS 74 (130)
Q Consensus 13 ~kIaVIGD---------~dtv~GFrLa------Gi~~~~~~~~~nf~v~~~~-~~~eei~~~~~~l~~~~digIIl--It 74 (130)
-||+++.+ .....|++|+ |+.| ++-.+++.|.. .+++...+..++|+.++.+-.|+ .+
T Consensus 6 IkIG~~~plSG~~a~~G~~~~~g~~la~~~~nggi~G----~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG~~~ 81 (371)
T 4f06_A 6 IKVGVIGTMSGPYALFGKNYKMGIDAWVAEHGNKVAG----HTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLAGLYF 81 (371)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHHHHHHHHHHCSEETT----EEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEECCS
T ss_pred EEEEEEeCCcCchHHhHHHHHHHHHHHHHHhCCCCCC----EEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 57888865 4566788876 3433 22234555543 35788999999999888887776 56
Q ss_pred hhhHHHHHHHHhhcCCCccEEEEcC
Q 032952 75 QYVANRIRFLVDSHNKPIPAILEIP 99 (130)
Q Consensus 75 e~~a~~i~~~i~~~~~~~P~Iv~IP 99 (130)
......+.+.+++. ..|+|..-.
T Consensus 82 S~~~~a~~~~~~~~--~vp~i~~~a 104 (371)
T 4f06_A 82 TPNAMAVAPLLQEA--KVPMVVMNA 104 (371)
T ss_dssp HHHHHHHGGGHHHH--TCCEEESSC
T ss_pred ccchHHHHHHHHhh--cCCcccccc
Confidence 66777777777764 478776543
No 12
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=72.93 E-value=22 Score=27.17 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=53.9
Q ss_pred ccccEEEEEec----------hhhHHHHHHh------cccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEE-
Q 032952 10 AASALIAMIAD----------EDTVVGFLLA------GVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVL- 72 (130)
Q Consensus 10 ~~~~kIaVIGD----------~dtv~GFrLa------Gi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIl- 72 (130)
.+.-||+++.. .+...|++|+ |+.+ ++-.+++.|...+++...+..++|+.++.+-.|+
T Consensus 4 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i~ggi~G----~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG 79 (379)
T 3n0w_A 4 TGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDVGGKALG----QPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFD 79 (379)
T ss_dssp --CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHTTTEETT----EECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCcEEEEEEeCCccccccccCHHHHHHHHHHHHHhcCCCCC----eEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEc
Confidence 34578999875 2456788776 3332 2233666676677888999999999756665555
Q ss_pred -EehhhHHHHHHHHhhcCCCccEEEEc
Q 032952 73 -ISQYVANRIRFLVDSHNKPIPAILEI 98 (130)
Q Consensus 73 -Ite~~a~~i~~~i~~~~~~~P~Iv~I 98 (130)
.+......+.+.+++ ...|.|..-
T Consensus 80 ~~~s~~~~a~~~~~~~--~~ip~i~~~ 104 (379)
T 3n0w_A 80 VVNSGTALAINNLVKD--KKKLAFITA 104 (379)
T ss_dssp CCCHHHHHHHHHHHHH--HTCEEEECS
T ss_pred CCCcHHHHHHHHHHHH--cCceEEEcC
Confidence 456666667776766 347887753
No 13
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=71.64 E-value=18 Score=27.39 Aligned_cols=89 Identities=16% Similarity=0.206 Sum_probs=50.8
Q ss_pred hhhcccccEEEEEec---------hhhHHHHHHhcccccc---cCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEE
Q 032952 6 QIRTAASALIAMIAD---------EDTVVGFLLAGVGNVD---LRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLI 73 (130)
Q Consensus 6 ~~~~~~~~kIaVIGD---------~dtv~GFrLaGi~~~~---~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlI 73 (130)
+....+..+|+++.. .+...|++++ ++..+ ...+-.+++.|...+.+...+.+++++.++.+..|+.
T Consensus 10 ~~a~~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a-~~~~ng~~~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig 88 (375)
T 4evq_A 10 SYAQAGALKVGLLLPYSGTYAPLGEAITRGLELY-VQSQGGKLGGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIG 88 (375)
T ss_dssp -----CCEEEEEEECSSSTTHHHHHHHHHHHHHH-HHHTTTEETTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEE
T ss_pred chhhCCCeEEEEEeCCCCcchhcCHHHHHHHHHH-HHHhCCCcCCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEc
Confidence 334456689999975 2556777775 11110 0011224555656667888888999987656655553
Q ss_pred --ehhhHHHHHHHHhhcCCCccEEEE
Q 032952 74 --SQYVANRIRFLVDSHNKPIPAILE 97 (130)
Q Consensus 74 --te~~a~~i~~~i~~~~~~~P~Iv~ 97 (130)
+......+.+.+.+ ...|+|..
T Consensus 89 ~~~s~~~~~~~~~~~~--~~iP~v~~ 112 (375)
T 4evq_A 89 TVHSGVAMAMVKIARE--DGIPTIVP 112 (375)
T ss_dssp CSSHHHHHHHHHHHHH--HCCCEEES
T ss_pred CCccHHHHHHHHHHHH--cCceEEec
Confidence 34555566666665 34788764
No 14
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=71.09 E-value=31 Score=26.11 Aligned_cols=83 Identities=8% Similarity=0.111 Sum_probs=53.8
Q ss_pred ccEEEEEechhhHHHHH----HhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHHhh
Q 032952 12 SALIAMIADEDTVVGFL----LAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDS 87 (130)
Q Consensus 12 ~~kIaVIGD~dtv~GFr----LaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~i~~ 87 (130)
..|||++|=...+.|++ +.|++-. -|...+ .+|+++.++++. .+.+.+|+=..-..+..++
T Consensus 106 ~~kIavVg~~~~~~~~~~i~~ll~~~i~------~~~~~~----~ee~~~~i~~l~-~~G~~vVVG~~~~~~~A~~---- 170 (225)
T 2pju_A 106 TSSIGVVTYQETIPALVAFQKTFNLRLD------QRSYIT----EEDARGQINELK-ANGTEAVVGAGLITDLAEE---- 170 (225)
T ss_dssp TSCEEEEEESSCCHHHHHHHHHHTCCEE------EEEESS----HHHHHHHHHHHH-HTTCCEEEESHHHHHHHHH----
T ss_pred CCcEEEEeCchhhhHHHHHHHHhCCceE------EEEeCC----HHHHHHHHHHHH-HCCCCEEECCHHHHHHHHH----
Confidence 36999999999999865 5666422 134434 499999999887 5678886544433333322
Q ss_pred cCCCccEEEEcCCCCCCCChhhHHHHHHHHhhc
Q 032952 88 HNKPIPAILEIPSKDHPYDPAQDSVLSRVKNLV 120 (130)
Q Consensus 88 ~~~~~P~Iv~IPs~~g~~~~~~d~I~~~Vk~ai 120 (130)
..+|.++-- | .++|++.+++|+
T Consensus 171 --~Gl~~vlI~-s--------~eSI~~Ai~eA~ 192 (225)
T 2pju_A 171 --AGMTGIFIY-S--------AATVRQAFSDAL 192 (225)
T ss_dssp --TTSEEEESS-C--------HHHHHHHHHHHH
T ss_pred --cCCcEEEEC-C--------HHHHHHHHHHHH
Confidence 446665521 1 367888777775
No 15
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=69.94 E-value=31 Score=26.09 Aligned_cols=85 Identities=11% Similarity=0.111 Sum_probs=51.8
Q ss_pred cccEEEEEech---------hhHHHHHHhccccccc-----CCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEE--Ee
Q 032952 11 ASALIAMIADE---------DTVVGFLLAGVGNVDL-----RRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVL--IS 74 (130)
Q Consensus 11 ~~~kIaVIGD~---------dtv~GFrLaGi~~~~~-----~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIl--It 74 (130)
+.-+|+++... +...|++++ ++.++. .++-.+++.|...+++...+.+++|+.++.+-.|+ .+
T Consensus 4 ~~i~IG~~~p~sG~~~~~g~~~~~g~~~a-~~~~N~~ggi~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 82 (364)
T 3lop_A 4 ADISVIQSLPLSGSQAVTGRALNAGARLY-FDWLNLNGGINGETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTVVG 82 (364)
T ss_dssp -CEEEEEEECSSSTTHHHHHHHHHHHHHH-HHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEECCCC
T ss_pred CeEEEEEEecCCCcchhccHHHHHHHHHH-HHHHHhcCCcCCeEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEecCC
Confidence 45689998873 356677765 111110 12223555566666788889999999766776665 34
Q ss_pred hhhHHHHHH--HHhhcCCCccEEEEc
Q 032952 75 QYVANRIRF--LVDSHNKPIPAILEI 98 (130)
Q Consensus 75 e~~a~~i~~--~i~~~~~~~P~Iv~I 98 (130)
......+.+ .+++. ..|+|..-
T Consensus 83 s~~~~~~~~~~~~~~~--~iP~v~~~ 106 (364)
T 3lop_A 83 TANVEALMREGVLAEA--RLPLVGPA 106 (364)
T ss_dssp HHHHHHHHHTTHHHHH--TCCEESCS
T ss_pred CHHHHhhCchhhHHhc--CCcEEEcc
Confidence 555666666 66663 47777543
No 16
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=68.88 E-value=35 Score=25.71 Aligned_cols=82 Identities=12% Similarity=0.137 Sum_probs=56.0
Q ss_pred cccEEEEEec---------hhhHHHHHHh--------cccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEE
Q 032952 11 ASALIAMIAD---------EDTVVGFLLA--------GVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLI 73 (130)
Q Consensus 11 ~~~kIaVIGD---------~dtv~GFrLa--------Gi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlI 73 (130)
+.-||+++.+ .....|++|+ ||.| ++-.+++.|...+++...++.++|+.++.+-+|+-
T Consensus 6 ~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~G----r~ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~g 81 (353)
T 4gnr_A 6 KTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGIDG----KQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVG 81 (353)
T ss_dssp CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTT----BEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEC
T ss_pred CeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCCC----eEEEEEEecCCCCHHHHHHHHHHHHhhCCceEEec
Confidence 3457888876 3567788887 5544 23346667777778999999999998777665553
Q ss_pred --ehhhHHHHHHHHhhcCCCccEEEEc
Q 032952 74 --SQYVANRIRFLVDSHNKPIPAILEI 98 (130)
Q Consensus 74 --te~~a~~i~~~i~~~~~~~P~Iv~I 98 (130)
+......+....++ ...|.|..-
T Consensus 82 ~~~s~~~~a~~~~~~~--~~vp~i~~~ 106 (353)
T 4gnr_A 82 PATSGATAAAVANATK--AGVPLISPS 106 (353)
T ss_dssp CCSHHHHHHHHHHHHH--TTCCEEESS
T ss_pred cccCcccceehhhhhc--cCcceEeec
Confidence 45566666676666 457777643
No 17
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=65.54 E-value=39 Score=25.81 Aligned_cols=80 Identities=13% Similarity=0.020 Sum_probs=52.4
Q ss_pred cccEEEEEech---------hhHHHHHHh--------cccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCC-eeEEE
Q 032952 11 ASALIAMIADE---------DTVVGFLLA--------GVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSRED-IAIVL 72 (130)
Q Consensus 11 ~~~kIaVIGD~---------dtv~GFrLa--------Gi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~d-igIIl 72 (130)
+.-+|+++... +...|++++ |+.+ ++-.+++.|...+++...+.+++|+.++. .+||.
T Consensus 6 ~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~G----~~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~iig 81 (392)
T 3lkb_A 6 QQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVPG----VVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLS 81 (392)
T ss_dssp EEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSSTT----EEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEEE
T ss_pred CceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcCC----eEeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEEe
Confidence 45789999862 567788775 3332 12235555656677888999999997645 46666
Q ss_pred EehhhHHHHHHHHhhcCCCccEEE
Q 032952 73 ISQYVANRIRFLVDSHNKPIPAIL 96 (130)
Q Consensus 73 Ite~~a~~i~~~i~~~~~~~P~Iv 96 (130)
.+......+.+.+++ ...|+|.
T Consensus 82 ~~s~~~~~~~~~~~~--~~iP~i~ 103 (392)
T 3lkb_A 82 YATGANLQLKPLIQE--LRIPTIP 103 (392)
T ss_dssp CCHHHHHHHHHHHHH--HTCCEEE
T ss_pred CCcHHHHHHHHHHHh--CCceEEe
Confidence 555555566666665 4488877
No 18
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=64.80 E-value=42 Score=25.19 Aligned_cols=85 Identities=11% Similarity=0.097 Sum_probs=52.2
Q ss_pred cccEEEEEech---------hhHHHHHHhccccccc---CCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEE--Eehh
Q 032952 11 ASALIAMIADE---------DTVVGFLLAGVGNVDL---RRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVL--ISQY 76 (130)
Q Consensus 11 ~~~kIaVIGD~---------dtv~GFrLaGi~~~~~---~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIl--Ite~ 76 (130)
+.-+|+++... +...|++++ ++..+. .++-.+++.|...+++...+.+++++.++.+-.|+ .+..
T Consensus 5 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a-~~~~~~~i~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~~~s~ 83 (368)
T 4eyg_A 5 DTFKVGLIVPMTGGQASTGKQIDNAIKLY-IKKHGDTVAGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGFGITP 83 (368)
T ss_dssp CEEEEEEEECSSSTTHHHHHHHHHHHHHH-HHHHCSEETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHH
T ss_pred CcEEEEEEeCCcCcchhccHHHHHHHHHH-HHHcCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECCCccH
Confidence 44789999873 355677664 211100 01222556666667788889999999766665555 4555
Q ss_pred hHHHHHHHHhhcCCCccEEEEc
Q 032952 77 VANRIRFLVDSHNKPIPAILEI 98 (130)
Q Consensus 77 ~a~~i~~~i~~~~~~~P~Iv~I 98 (130)
....+.+.+.+ ...|+|..-
T Consensus 84 ~~~~~~~~~~~--~~ip~i~~~ 103 (368)
T 4eyg_A 84 AALAAAPLATQ--AKVPEIVMA 103 (368)
T ss_dssp HHHHHHHHHHH--HTCCEEESS
T ss_pred HHHHHHHHHHh--CCceEEecc
Confidence 66666666666 347877653
No 19
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=63.80 E-value=48 Score=25.45 Aligned_cols=82 Identities=21% Similarity=0.256 Sum_probs=51.4
Q ss_pred ccEEEEEec---------hhhHHHHHHhccccccc-------CC--cceeEEecCCCcHHHHHHHHHHHhcCCCe-eEEE
Q 032952 12 SALIAMIAD---------EDTVVGFLLAGVGNVDL-------RR--KTNYLIVDSKTTIKQIEDAFKEFTSREDI-AIVL 72 (130)
Q Consensus 12 ~~kIaVIGD---------~dtv~GFrLaGi~~~~~-------~~--~~nf~v~~~~~~~eei~~~~~~l~~~~di-gIIl 72 (130)
.-+|+++.. .+...|++++ ++.+|. .+ +-.+++.|...+++...+.+++|+.++.+ +||.
T Consensus 4 ~i~IG~~~p~sG~~a~~g~~~~~g~~~a-~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~iiG 82 (391)
T 3eaf_A 4 TINVGLLVDETGPTSDVGKGYSLGAELA-FKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAIIG 82 (391)
T ss_dssp EEEEEEEECSSSTTHHHHHHHHHHHHHH-HHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred cEEEEEEEcCCCchhhhhHHHHHHHHHH-HHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEE
Confidence 468999875 3557788876 222111 11 22355666666778888999999955554 5555
Q ss_pred EehhhHHHHHHHHhhcCCCccEEE
Q 032952 73 ISQYVANRIRFLVDSHNKPIPAIL 96 (130)
Q Consensus 73 Ite~~a~~i~~~i~~~~~~~P~Iv 96 (130)
.+......+.+.+++. ..|+|.
T Consensus 83 ~~s~~~~a~~~~~~~~--~iP~i~ 104 (391)
T 3eaf_A 83 WGTADTEKLSDQVDTD--KITYIS 104 (391)
T ss_dssp CCHHHHHHHHHHHHHH--TCEEEE
T ss_pred cCcHHHHHHHHHHhhc--CCeEEe
Confidence 5555566666666663 478776
No 20
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=62.23 E-value=50 Score=25.20 Aligned_cols=83 Identities=20% Similarity=0.203 Sum_probs=53.7
Q ss_pred ccEEEEEec---------hhhHHHHHHh------cccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEE--e
Q 032952 12 SALIAMIAD---------EDTVVGFLLA------GVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLI--S 74 (130)
Q Consensus 12 ~~kIaVIGD---------~dtv~GFrLa------Gi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlI--t 74 (130)
.-||+++.. .+...|++|+ |-+++. .++-.+++.|...+++...+..++|+.++.+-.|+= +
T Consensus 4 ~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi~-G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 82 (374)
T 3n0x_A 4 DLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLD-GRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSS 82 (374)
T ss_dssp CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEET-TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSS
T ss_pred CEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCcC-CEEEEEEEecCCCCHHHHHHHHHHHHHhCCceEEEcCCC
Confidence 467888875 3667788875 211111 123346667767778999999999998777766664 4
Q ss_pred hhhHHHHHHHHhhcCCCccEEEE
Q 032952 75 QYVANRIRFLVDSHNKPIPAILE 97 (130)
Q Consensus 75 e~~a~~i~~~i~~~~~~~P~Iv~ 97 (130)
......+.+..++++ .|.|..
T Consensus 83 s~~~~a~~~~~~~~~--ip~i~~ 103 (374)
T 3n0x_A 83 SAAALADLPVAEENK--KILIVE 103 (374)
T ss_dssp HHHHHHHHHHHHHHT--CCEEEC
T ss_pred cHHHHHHHHHHHHcC--ccEEEc
Confidence 455666667677643 677663
No 21
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=60.30 E-value=39 Score=23.35 Aligned_cols=71 Identities=10% Similarity=0.103 Sum_probs=39.1
Q ss_pred ccEEEEEechhhHHHHH------HhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEe----------h
Q 032952 12 SALIAMIADEDTVVGFL------LAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLIS----------Q 75 (130)
Q Consensus 12 ~~kIaVIGD~dtv~GFr------LaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIt----------e 75 (130)
..+|.++||+=| .|+. |.+...+ +.......++...+.+.+.+.+.....-+|+|. +
T Consensus 20 ~prVl~iGDSit-~G~~~~l~~~l~~~~~v------~~~~~~~~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ND~~~~~~ 92 (200)
T 4h08_A 20 LPHVLLIGNSIT-RGYYGKVEAALKEKAYV------GRLSNSKSVGDPALIEELAVVLKNTKFDVIHFNNGLHGFDYTEE 92 (200)
T ss_dssp SCEEEEEESHHH-HHHHHHHHHHTTTTCEE------EEEEESCCTTCHHHHHHHHHHHHHSCCSEEEECCCSSCTTSCHH
T ss_pred CCeEEEEchhHH-hhhHHHHHHHhccCCeE------EEEeccCCccHHHHHHHHHHHHhcCCCCeEEEEeeeCCCCCCHH
Confidence 358999999855 3552 3332211 112223334446666677776654555556652 2
Q ss_pred hhHHHHHHHHhhcC
Q 032952 76 YVANRIRFLVDSHN 89 (130)
Q Consensus 76 ~~a~~i~~~i~~~~ 89 (130)
.+.+.++..|+.++
T Consensus 93 ~~~~~l~~ii~~l~ 106 (200)
T 4h08_A 93 EYDKSFPKLIKIIR 106 (200)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34566777777764
No 22
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=59.99 E-value=52 Score=24.73 Aligned_cols=85 Identities=11% Similarity=0.137 Sum_probs=53.1
Q ss_pred ccccEEEEEech---------hhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEE--EehhhH
Q 032952 10 AASALIAMIADE---------DTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVL--ISQYVA 78 (130)
Q Consensus 10 ~~~~kIaVIGD~---------dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIl--Ite~~a 78 (130)
...-+|+++... +...|++++ ++.++ ..+-.+++.|...+++...+.+++++.++.+-.|+ .+....
T Consensus 25 ~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a-~~~i~-G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~~ 102 (386)
T 3sg0_A 25 QAEIKIGITMSASGPGAALGQPQSKTVAAL-PKEIG-GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGSSLTPVS 102 (386)
T ss_dssp CCCEEEEEEECCSSTTHHHHHHHHHHGGGS-CSEET-TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECCSSHHHH
T ss_pred CCceEEEEEeccCCchhhhcHHHHHHHHHH-HHHcC-CEEEEEEEecCCCCHHHHHHHHHHHHhhcCceEEECCCCchhH
Confidence 455789999863 456677664 33331 11222445565566788889999999876665555 345555
Q ss_pred HHHHHHHhhcCCCccEEEEc
Q 032952 79 NRIRFLVDSHNKPIPAILEI 98 (130)
Q Consensus 79 ~~i~~~i~~~~~~~P~Iv~I 98 (130)
..+.+.+++ ...|+|..-
T Consensus 103 ~~~~~~~~~--~~ip~v~~~ 120 (386)
T 3sg0_A 103 LPLIDIAAE--AKTPLMTMA 120 (386)
T ss_dssp HHHHHHHHH--TTCCEEECC
T ss_pred HHHHHHHHh--cCCeEEEec
Confidence 566666665 558888754
No 23
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=58.94 E-value=13 Score=24.21 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHHhhc---CCCccEEEEcCCCCCCCChhhHHHHHHHHhhcccCC
Q 032952 53 KQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSH---NKPIPAILEIPSKDHPYDPAQDSVLSRVKNLVSVES 124 (130)
Q Consensus 53 eei~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~---~~~~P~Iv~IPs~~g~~~~~~d~I~~~Vk~aiGidi 124 (130)
..+++.|++. .-+|-.+=|+++ ...++++.+. ....|.|+ |++..--.++..+.|++.+.++.|.+-
T Consensus 18 ~~aK~~L~~~--gi~y~~idi~~d--~~~~~~~~~~~~G~~tVP~I~-i~Dg~~l~~~~~~el~~~L~el~gL~~ 87 (92)
T 2lqo_A 18 LRLKTALTAN--RIAYDEVDIEHN--RAAAEFVGSVNGGNRTVPTVK-FADGSTLTNPSADEVKAKLVKIAGLEH 87 (92)
T ss_dssp HHHHHHHHHT--TCCCEEEETTTC--HHHHHHHHHHSSSSSCSCEEE-ETTSCEEESCCHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHhc--CCceEEEEcCCC--HHHHHHHHHHcCCCCEeCEEE-EeCCEEEeCCCHHHHHHHHHHhcCCcc
Confidence 4455544432 234444445443 2233334433 25689765 555332223445789999999999763
No 24
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=57.82 E-value=61 Score=24.80 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=32.5
Q ss_pred HHHHhcCCCeeEEEEehhh---HHHHHHHHhhcCCCccEEEEcCCCCCCCChhhHHHHHHHHh
Q 032952 59 FKEFTSREDIAIVLISQYV---ANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKN 118 (130)
Q Consensus 59 ~~~l~~~~digIIlIte~~---a~~i~~~i~~~~~~~P~Iv~IPs~~g~~~~~~d~I~~~Vk~ 118 (130)
++++++++++-+++|+-.- ++.+...++ ...++++|=|.-... .+-..|.+..++
T Consensus 58 ~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~---aGkhVl~EKP~a~~~--~e~~~l~~~a~~ 115 (336)
T 2p2s_A 58 AEQLITDASIDLIACAVIPCDRAELALRTLD---AGKDFFTAKPPLTTL--EQLDAVQRRVAE 115 (336)
T ss_dssp HHHHHTCTTCCEEEECSCGGGHHHHHHHHHH---TTCEEEECSSCCSCH--HHHHHHHHHHHH
T ss_pred HHHHhhCCCCCEEEEeCChhhHHHHHHHHHH---CCCcEEEeCCCCCCH--HHHHHHHHHHHH
Confidence 5678877788888877543 344444343 567888887764422 223445555544
No 25
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=54.95 E-value=41 Score=26.12 Aligned_cols=84 Identities=10% Similarity=0.182 Sum_probs=52.7
Q ss_pred ccccEEEEEec---------hhhHHHHHHhccccccc-----CCcceeEEecCC-CcHHHHHHHHHHHhcCCCeeEEE--
Q 032952 10 AASALIAMIAD---------EDTVVGFLLAGVGNVDL-----RRKTNYLIVDSK-TTIKQIEDAFKEFTSREDIAIVL-- 72 (130)
Q Consensus 10 ~~~~kIaVIGD---------~dtv~GFrLaGi~~~~~-----~~~~nf~v~~~~-~~~eei~~~~~~l~~~~digIIl-- 72 (130)
...-||+++.. .....||+|+ ++.+|. .++-.+++.|.+ .+.+...+..++|+.++.+-.|+
T Consensus 12 ~~~i~IG~~~plsG~~a~~g~~~~~g~~lA-~~~iN~~ggi~G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~aiiG~ 90 (419)
T 3h5l_A 12 SDPVVIGCPAPLTGIVAADGIEFQRGIQMA-ADEINAVGGILGRPIELVFADTQSKGVDVVIQSAQRLIDRDNASALIAG 90 (419)
T ss_dssp -CCEEEEEEECCSSTTHHHHHHHHHHHHHH-HHHHHTTTSBTTBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEEECS
T ss_pred CCCEEEEEeecCCCcccccCHHHHHHHHHH-HHHHHhcCCcCceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEEEcc
Confidence 45689999976 4567788887 222211 123345666644 46788999999999877877776
Q ss_pred EehhhHHHHHHHHhhcCCCccEEE
Q 032952 73 ISQYVANRIRFLVDSHNKPIPAIL 96 (130)
Q Consensus 73 Ite~~a~~i~~~i~~~~~~~P~Iv 96 (130)
.+......+....+++ ..|.|.
T Consensus 91 ~~s~~~~a~~~~~~~~--~ip~i~ 112 (419)
T 3h5l_A 91 YNLENGTALHDVAADA--GVIAMH 112 (419)
T ss_dssp CCSSCSCHHHHHHHHH--TCEEEE
T ss_pred ccchhHHHhHHHHHHc--CCeEEE
Confidence 3344444455555553 367665
No 26
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=52.70 E-value=71 Score=23.99 Aligned_cols=86 Identities=13% Similarity=0.217 Sum_probs=52.6
Q ss_pred cccEEEEEec---------hhhHHHHHHhcccccc--cCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEE--Eehhh
Q 032952 11 ASALIAMIAD---------EDTVVGFLLAGVGNVD--LRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVL--ISQYV 77 (130)
Q Consensus 11 ~~~kIaVIGD---------~dtv~GFrLaGi~~~~--~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIl--Ite~~ 77 (130)
...||+++.. .+...|++++ ++.++ ..++-.+++.|...+.+...+.+++++.++.+-.|+ .+...
T Consensus 15 ~~~~iG~~~plsG~~a~~g~~~~~g~~~a-~~~in~i~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG~~~s~~ 93 (366)
T 3td9_A 15 KVVKIAVILPMTGGISAFGRMVWEGIQIA-HEEKPTVLGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIGEVASAH 93 (366)
T ss_dssp -CEEEEEEECCSSTTHHHHHHHHHHHHHH-HHHCCEETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHHH
T ss_pred ceEEEEEEECCcCcchhcCHHHHHHHHHH-HHHhhhcCCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEccCCchh
Confidence 4578999876 3455666665 11111 011122455566667788899999999776554444 45556
Q ss_pred HHHHHHHHhhcCCCccEEEEcC
Q 032952 78 ANRIRFLVDSHNKPIPAILEIP 99 (130)
Q Consensus 78 a~~i~~~i~~~~~~~P~Iv~IP 99 (130)
...+.+.+++ ...|+|..-.
T Consensus 94 ~~~~~~~~~~--~~iP~i~~~~ 113 (366)
T 3td9_A 94 SLAIAPIAEE--NKVPMVTPAS 113 (366)
T ss_dssp HHHHHHHHHH--TTCCEEESSC
T ss_pred HHHHHHHHHh--CCCeEEecCC
Confidence 6666676766 4588887543
No 27
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=48.13 E-value=83 Score=23.45 Aligned_cols=84 Identities=15% Similarity=0.131 Sum_probs=49.6
Q ss_pred cccEEEEEec---------hhhHHHHHHhccccccc-----CCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEE--e
Q 032952 11 ASALIAMIAD---------EDTVVGFLLAGVGNVDL-----RRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLI--S 74 (130)
Q Consensus 11 ~~~kIaVIGD---------~dtv~GFrLaGi~~~~~-----~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlI--t 74 (130)
...+|+++.. .+...|++++ ++..+. ..+-.+++.|...+.+...+.+++++.++.+-.|+. +
T Consensus 3 ~~i~IG~i~p~sg~~~~~~~~~~~g~~~a-~~~~n~~ggi~G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 81 (358)
T 3hut_A 3 LALLLGYELPLTGANAAYGRVFQEAARLQ-LDRFNAAGGVGGRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDFS 81 (358)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHH-HHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECSS
T ss_pred ccEEEEEEeccCCchhhcCHHHHHHHHHH-HHHHHhhCCCCCeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEcCCC
Confidence 4468888876 2455666654 111110 012234555655667888889999996666655554 3
Q ss_pred hhhHHHHHHHHhhcCCCccEEEE
Q 032952 75 QYVANRIRFLVDSHNKPIPAILE 97 (130)
Q Consensus 75 e~~a~~i~~~i~~~~~~~P~Iv~ 97 (130)
......+.+.+.+ ...|+|..
T Consensus 82 s~~~~~~~~~~~~--~~iP~v~~ 102 (358)
T 3hut_A 82 STVSMAAGSIYGK--EGMPQLSP 102 (358)
T ss_dssp HHHHHHHHHHHHH--HTCCEEES
T ss_pred cHHHHHHHHHHHH--CCCcEEec
Confidence 4445555566665 44788875
No 28
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=47.72 E-value=90 Score=23.73 Aligned_cols=84 Identities=15% Similarity=0.110 Sum_probs=52.2
Q ss_pred cccEEEEEech--------hhHHHHHHh--------cccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEE-
Q 032952 11 ASALIAMIADE--------DTVVGFLLA--------GVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLI- 73 (130)
Q Consensus 11 ~~~kIaVIGD~--------dtv~GFrLa--------Gi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlI- 73 (130)
+.-+|+++... ....|++++ |+.+ .++-.+++.|...+.+...+.+++|+.++.+-.|+-
T Consensus 4 ~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~G---g~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~ 80 (387)
T 3i45_A 4 EAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLG---GRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGT 80 (387)
T ss_dssp CCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTT---TBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEEC
T ss_pred CCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCC---CcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEECC
Confidence 44689998652 356677765 2322 012235566666677888999999997656655553
Q ss_pred -ehhhHHHHHHHHhhcCCCccEEEEcC
Q 032952 74 -SQYVANRIRFLVDSHNKPIPAILEIP 99 (130)
Q Consensus 74 -te~~a~~i~~~i~~~~~~~P~Iv~IP 99 (130)
+......+.+.+++ ...|.|..-+
T Consensus 81 ~~s~~~~a~~~~~~~--~~ip~i~~~~ 105 (387)
T 3i45_A 81 FLSHVGLAVSDFARQ--RKVLFMASEP 105 (387)
T ss_dssp CSHHHHHHHHHHHHH--HTCCEEECSC
T ss_pred cchHHHHHHHHHHHH--cCceEEecCC
Confidence 45555666676666 3478887543
No 29
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=46.30 E-value=89 Score=23.26 Aligned_cols=78 Identities=18% Similarity=0.159 Sum_probs=47.4
Q ss_pred cEEEEEec---------hhhHHHHHHh--------cccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEE--E
Q 032952 13 ALIAMIAD---------EDTVVGFLLA--------GVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVL--I 73 (130)
Q Consensus 13 ~kIaVIGD---------~dtv~GFrLa--------Gi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIl--I 73 (130)
-+|+++.. .+...|++++ |+.+ .+-.+++.|...+.+...+.+++|+. +.+-.|+ .
T Consensus 3 i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi~G----~~~~l~~~d~~~~~~~~~~~~~~l~~-~~v~~iig~~ 77 (356)
T 3ipc_A 3 VVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGING----EQIKIVLGDDVSDPKQGISVANKFVA-DGVKFVVGHA 77 (356)
T ss_dssp EEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTT----BCEEEEEEECTTCHHHHHHHHHHHHH-TTCCEEEECS
T ss_pred EEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCCCC----eEEEEEEecCCCCHHHHHHHHHHHHH-CCCcEEEcCC
Confidence 46788765 2455677765 2222 12235556666677888899999997 5554444 3
Q ss_pred ehhhHHHHHHHHhhcCCCccEEEE
Q 032952 74 SQYVANRIRFLVDSHNKPIPAILE 97 (130)
Q Consensus 74 te~~a~~i~~~i~~~~~~~P~Iv~ 97 (130)
+......+.+.+.+ ...|+|..
T Consensus 78 ~s~~~~~~~~~~~~--~~ip~v~~ 99 (356)
T 3ipc_A 78 NSGVSIPASEVYAE--NGILEITP 99 (356)
T ss_dssp SHHHHHHHHHHHHT--TTCEEEES
T ss_pred CcHHHHHHHHHHHh--CCCeEEec
Confidence 45555566666665 55888774
No 30
>3uf6_A LMO1369 protein; structural genomics, the center for structural genomics of I diseases, csgid, unknown function, transferase; HET: COD; 1.80A {Listeria monocytogenes} PDB: 3tng_A* 3u9e_A*
Probab=46.12 E-value=1.1e+02 Score=24.08 Aligned_cols=81 Identities=14% Similarity=0.195 Sum_probs=48.6
Q ss_pred ccEEEEEechhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEeh-hhHHHHHHHHhhcCC
Q 032952 12 SALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQ-YVANRIRFLVDSHNK 90 (130)
Q Consensus 12 ~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte-~~a~~i~~~i~~~~~ 90 (130)
--++..+||++.+ +++-.++ |.++++.++++.++.+.. +++..+.-.++=-- ...+.++..+.+...
T Consensus 43 ~~~~ILvG~~~~I---~~~~~~~--------~eIid~~~~~~aar~a~~-mV~~G~ADa~vsG~~~t~~~lr~~l~~~~G 110 (291)
T 3uf6_A 43 LGKFLLFGKKEDK---TLTANES--------VTWIQTDTAEAAAQGAIL-AVKNKEADILVKGFIPTATLMHHVLKKENG 110 (291)
T ss_dssp CCEEEEEESSCCH---HHHTSTT--------EEEEECCSHHHHHHHHHH-HHHTTSCSEEEECSSCHHHHHHHHTCGGGS
T ss_pred CceEEEEcCHHHH---hhhccCC--------CEEECCCChHHHHHHHHH-HHHCCCCCEEEECCCChHHHHHHHhccccC
Confidence 3567889998888 3333333 577777666566665554 66666654443322 456777776654433
Q ss_pred Ccc-------EEEEcCCCCCC
Q 032952 91 PIP-------AILEIPSKDHP 104 (130)
Q Consensus 91 ~~P-------~Iv~IPs~~g~ 104 (130)
..| .++.+|+.++.
T Consensus 111 ~r~~~~vs~~~~~~~p~~~~~ 131 (291)
T 3uf6_A 111 LRTDQLLSQIAIFDIPTYHKP 131 (291)
T ss_dssp CCCSSCCEEEEEEECTTSSSC
T ss_pred CCCCceeeEEEEEEEcCCCCc
Confidence 333 46789976554
No 31
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=44.78 E-value=1.2e+02 Score=24.88 Aligned_cols=58 Identities=12% Similarity=0.045 Sum_probs=38.5
Q ss_pred eeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEe-----------hhhHHHHHHHHhhcCCCccEEE-EcC
Q 032952 42 NYLIVDSKTTIKQIEDAFKEFTSREDIAIVLIS-----------QYVANRIRFLVDSHNKPIPAIL-EIP 99 (130)
Q Consensus 42 nf~v~~~~~~~eei~~~~~~l~~~~digIIlIt-----------e~~a~~i~~~i~~~~~~~P~Iv-~IP 99 (130)
|++=...+.+.+...++|+.+++++++..|++. ...++.+-+.+.+.....|+++ .+.
T Consensus 343 NPlDl~g~a~~~~~~~al~~~l~dp~vd~vlv~~~~~~~Gg~~~~~~a~~i~~al~~~~~~kPvvv~~~~ 412 (457)
T 2csu_A 343 NPVDMIASARGEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMA 412 (457)
T ss_dssp SEEECCTTCCHHHHHHHHHHHHHSTTCSEEEEEEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_pred CCeeCCCCCCHHHHHHHHHHHhcCCCCCEEEEEccccccccCCchhHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 555443456679999999999999988777652 2344555555555435578887 444
No 32
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=44.09 E-value=58 Score=23.55 Aligned_cols=89 Identities=11% Similarity=0.183 Sum_probs=39.9
Q ss_pred hhcccccEEEEEech-------hhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHH
Q 032952 7 IRTAASALIAMIADE-------DTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVAN 79 (130)
Q Consensus 7 ~~~~~~~kIaVIGD~-------dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~ 79 (130)
+.++..++||++-.. +....-.+.|++..-....-+..+.+.+.+.+...+.++.+..+.==|||++.....+
T Consensus 3 L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~ 82 (292)
T 3k4h_A 3 LANQTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREND 82 (292)
T ss_dssp ----CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTTC
T ss_pred cccCCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCCh
Confidence 345566889998654 2222223334432211111113333433344445566666665444566665544332
Q ss_pred HHHHHHhhcCCCccEEEE
Q 032952 80 RIRFLVDSHNKPIPAILE 97 (130)
Q Consensus 80 ~i~~~i~~~~~~~P~Iv~ 97 (130)
..-+.+.+ ...|+|+.
T Consensus 83 ~~~~~l~~--~~iPvV~~ 98 (292)
T 3k4h_A 83 RIIQYLHE--QNFPFVLI 98 (292)
T ss_dssp HHHHHHHH--TTCCEEEE
T ss_pred HHHHHHHH--CCCCEEEE
Confidence 22222322 67897763
No 33
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*
Probab=39.70 E-value=66 Score=26.90 Aligned_cols=56 Identities=18% Similarity=0.328 Sum_probs=39.4
Q ss_pred hcccccEEEEEechhhHHH-------------------HHHh-cccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCC
Q 032952 8 RTAASALIAMIADEDTVVG-------------------FLLA-GVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSRED 67 (130)
Q Consensus 8 ~~~~~~kIaVIGD~dtv~G-------------------FrLa-Gi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~d 67 (130)
++....+++||.|...++| |+.. |++.. |++.+- .+.+++.++++.+. ..
T Consensus 59 ~~~~~~~v~vvtdgt~ilGlG~iG~hS~sPvmh~ka~lf~~~gGid~~-------yi~ldv-~d~de~~~~v~~l~--~~ 128 (439)
T 2dvm_A 59 YTSKGNLVAVVSDGSRILGLGNIGPLAGLPVMEGKALLFKRFGGVDAF-------PIMIKE-QEPNKFIDIVKAIA--PT 128 (439)
T ss_dssp HSSGGGEEEEEECSTTBTTTBCCCHHHHHHHHHHHHHHHHHHHCCEEE-------EEECSC-CSHHHHHHHHHHTG--GG
T ss_pred hcccCcEEEEEECCCeEecccceeccccCHHHHHHHHHHHHhCCCCCe-------eeeeec-CCHHHHHHHHHHhC--cc
Confidence 4555678999988877777 6666 78765 666553 24689999998775 67
Q ss_pred eeEEEE
Q 032952 68 IAIVLI 73 (130)
Q Consensus 68 igIIlI 73 (130)
++-|=+
T Consensus 129 f~Ginv 134 (439)
T 2dvm_A 129 FGGINL 134 (439)
T ss_dssp CSEEEE
T ss_pred CcEEEE
Confidence 666666
No 34
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=39.61 E-value=49 Score=26.27 Aligned_cols=55 Identities=7% Similarity=0.202 Sum_probs=38.0
Q ss_pred EEEEec-hhhH-------HHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehh
Q 032952 15 IAMIAD-EDTV-------VGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQY 76 (130)
Q Consensus 15 IaVIGD-~dtv-------~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~ 76 (130)
+..+|| +++. --+.-.|++.. +..-..+++++|+.+.++++=+++++-=|++.--
T Consensus 39 vilvg~dpaS~~Yv~~k~k~~~~~Gi~~~-------~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlP 101 (285)
T 3l07_A 39 AIIVGNDPASKTYVASKEKACAQVGIDSQ-------VITLPEHTTESELLELIDQLNNDSSVHAILVQLP 101 (285)
T ss_dssp EEEESCCHHHHHHHHHHHHHHHHHTCEEE-------EEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHcCCeEE-------EEECCCCCCHHHHHHHHHHHhCCCCCcEEEEcCC
Confidence 445576 3333 34566899765 5555667889999999999987878855555533
No 35
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=38.95 E-value=62 Score=20.54 Aligned_cols=76 Identities=11% Similarity=0.118 Sum_probs=36.9
Q ss_pred ccEEEEEechhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHH-------HHHHH
Q 032952 12 SALIAMIADEDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVAN-------RIRFL 84 (130)
Q Consensus 12 ~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~-------~i~~~ 84 (130)
..+|.|+.|.....-..-.-++.. +|.+... ....+++. ++....+.+|++.-.+.+ .++.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~------g~~v~~~----~~~~~a~~-~l~~~~~dlvi~D~~l~~~~~~g~~~~~~- 73 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPL------DVTIQCF----ASAESFMR-QQISDDAIGMIIEAHLEDKKDSGIELLET- 73 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTS------SSEEEEE----SSHHHHTT-SCCCTTEEEEEEETTGGGBTTHHHHHHHH-
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHC------CcEEEEe----CCHHHHHH-HHhccCCCEEEEeCcCCCCCccHHHHHHH-
Confidence 468999988654433322222110 1233222 22344444 445667999999855433 2222
Q ss_pred HhhcCCCccEEEEcC
Q 032952 85 VDSHNKPIPAILEIP 99 (130)
Q Consensus 85 i~~~~~~~P~Iv~IP 99 (130)
+.+.....|+|+.-.
T Consensus 74 l~~~~~~~~ii~~s~ 88 (136)
T 3kto_A 74 LVKRGFHLPTIVMAS 88 (136)
T ss_dssp HHHTTCCCCEEEEES
T ss_pred HHhCCCCCCEEEEEc
Confidence 222234567666543
No 36
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=38.53 E-value=47 Score=26.33 Aligned_cols=55 Identities=7% Similarity=0.193 Sum_probs=38.5
Q ss_pred EEEEec-hhh-------HHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehh
Q 032952 15 IAMIAD-EDT-------VVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQY 76 (130)
Q Consensus 15 IaVIGD-~dt-------v~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~ 76 (130)
+..+|| +++ .--+.-.|++.. +..-..+++++|+.+.++++=+++++-=|++.--
T Consensus 38 vilvg~dpaS~~Yv~~k~k~~~~~Gi~~~-------~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlP 100 (285)
T 3p2o_A 38 VILVGDNPASQTYVKSKAKACEECGIKSL-------VYHLNENITQNELLALINTLNHDDSVHGILVQLP 100 (285)
T ss_dssp EEEESCCHHHHHHHHHHHHHHHHHTCEEE-------EEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeEE-------EEECCCCCCHHHHHHHHHHHhCCCCCCEEEecCC
Confidence 455676 444 234566899775 5566777889999999999988888855555533
No 37
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=38.22 E-value=1.3e+02 Score=22.95 Aligned_cols=82 Identities=11% Similarity=0.038 Sum_probs=53.3
Q ss_pred cccEEEEEech---hhHHHHHHhcccccccCCcceeEEecCCC-cHHHHHHHHHHHhcCCCeeEEE--EehhhHHHHHHH
Q 032952 11 ASALIAMIADE---DTVVGFLLAGVGNVDLRRKTNYLIVDSKT-TIKQIEDAFKEFTSREDIAIVL--ISQYVANRIRFL 84 (130)
Q Consensus 11 ~~~kIaVIGD~---dtv~GFrLaGi~~~~~~~~~nf~v~~~~~-~~eei~~~~~~l~~~~digIIl--Ite~~a~~i~~~ 84 (130)
..-||+++.+. ....||+|| ++.++..++-.+++.|.+. +..++..+..+++.+ ++-.|+ .+...+..+...
T Consensus 9 ~~ikIG~~~~~sg~~~~~a~~lA-v~~iN~~g~l~~~~~D~~~~d~~~a~~~~~~l~~~-~V~aiiG~~~S~~~~a~~~~ 86 (384)
T 3saj_A 9 NNIQIGGLFPNQQSQEHAAFRFA-LSQLTEPPKLLPQIDIVNISDSFEMTYRFCSQFSK-GVYAIFGFYERRTVNMLTSF 86 (384)
T ss_dssp SEEEEEEEESCSSSHHHHHHHHH-HTTCCSSSEEEEEEEECCTTCHHHHHHHHHHHHHT-TCSCEEECCCHHHHHHHHHH
T ss_pred cceeEEEEecCCCHHHHHHHHHH-HHHHhcCCccceeeEecccCchhhHHHHHHHHHhc-CeEEEECCCCHHHHHHHHHH
Confidence 45789999874 788999987 6566554443456666443 678888899999865 554443 234455566666
Q ss_pred HhhcCCCccEEE
Q 032952 85 VDSHNKPIPAIL 96 (130)
Q Consensus 85 i~~~~~~~P~Iv 96 (130)
.+.++ .|.|-
T Consensus 87 ~~~~~--iP~is 96 (384)
T 3saj_A 87 CGALH--VCFIT 96 (384)
T ss_dssp HHHHT--CCEEE
T ss_pred hccCC--CCeEe
Confidence 66643 66664
No 38
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=37.64 E-value=95 Score=25.76 Aligned_cols=84 Identities=13% Similarity=0.107 Sum_probs=51.7
Q ss_pred ceeEEecCCCcHHHHHHH----HHHHhcCCCeeEEEEe--------hhhH---HHHHHHHhhc-----CCCccEEEEcCC
Q 032952 41 TNYLIVDSKTTIKQIEDA----FKEFTSREDIAIVLIS--------QYVA---NRIRFLVDSH-----NKPIPAILEIPS 100 (130)
Q Consensus 41 ~nf~v~~~~~~~eei~~~----~~~l~~~~digIIlIt--------e~~a---~~i~~~i~~~-----~~~~P~Iv~IPs 100 (130)
.||.=..-..+.+.+.+. |+-+++++++-.|||+ +.+| +-|-..+.++ ....|+||-+-+
T Consensus 302 ANflD~gG~a~~e~v~~~~~~~l~ii~~d~~vk~i~vnIfGGI~~cd~vA~t~~GIi~A~~~~~~~~~~~~~PivVRl~G 381 (425)
T 3mwd_A 302 ANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGG 381 (425)
T ss_dssp CEEEEEESCCCHHHHHHHHHHHHHHTTSSCCTTCEEEEECBCBCSSSCHHHHHHHHHHHHHHTHHHHHHTTEEEEEECBS
T ss_pred cceEEecCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCcccHHHHHHHHhHHHHHHHHhhhccccCCCcEEEECCc
Confidence 578866666677888774 8877778887777764 4567 3333333333 246899999955
Q ss_pred CCCCCChhhHHHHHHHHhhcccCCccc
Q 032952 101 KDHPYDPAQDSVLSRVKNLVSVESVAS 127 (130)
Q Consensus 101 ~~g~~~~~~d~I~~~Vk~aiGidi~~~ 127 (130)
.+ ++.++. |.+-.-+-+|+.+...
T Consensus 382 tn--~~eg~~-il~~~g~~lgip~~~~ 405 (425)
T 3mwd_A 382 PN--YQEGLR-VMGEVGKTTGIPIHVF 405 (425)
T ss_dssp TT--HHHHHH-HHHHHHHHHTCCEEEE
T ss_pred CC--HHHHHH-HHHhCCcccCCceEEe
Confidence 44 334444 4444444557766543
No 39
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=36.68 E-value=1.2e+02 Score=21.83 Aligned_cols=89 Identities=7% Similarity=0.189 Sum_probs=38.9
Q ss_pred hcccccEEEEEec--hhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHH
Q 032952 8 RTAASALIAMIAD--EDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLV 85 (130)
Q Consensus 8 ~~~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~i 85 (130)
+++..++|+++-. .+....-.+.|++..-....-+..+.+.+.+.++..+.++.++.+.==|||+......+.+.+.+
T Consensus 3 ~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l 82 (289)
T 1dbq_A 3 KVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAML 82 (289)
T ss_dssp -----CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHH
T ss_pred CCCCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHH
Confidence 3455678999864 22222222333322100000012333333345666677888875443467776543322333334
Q ss_pred hhcCCCccEEEE
Q 032952 86 DSHNKPIPAILE 97 (130)
Q Consensus 86 ~~~~~~~P~Iv~ 97 (130)
.+ ....|+|+.
T Consensus 83 ~~-~~~iPvV~~ 93 (289)
T 1dbq_A 83 EE-YRHIPMVVM 93 (289)
T ss_dssp HH-TTTSCEEEE
T ss_pred Hh-ccCCCEEEE
Confidence 32 145787763
No 40
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=36.28 E-value=1.2e+02 Score=21.82 Aligned_cols=90 Identities=12% Similarity=0.110 Sum_probs=40.8
Q ss_pred hhcccccEEEEEec--hhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHH
Q 032952 7 IRTAASALIAMIAD--EDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFL 84 (130)
Q Consensus 7 ~~~~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~ 84 (130)
+.++..++|+++-. .+....=.+.|++..-....-++.+.+.+.+.+...+.++.++.+.==|||+...... .+.+.
T Consensus 3 L~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~ 81 (293)
T 3l6u_A 3 LTSPKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDV-YIGSA 81 (293)
T ss_dssp ------CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTT-TTHHH
T ss_pred CCCCCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChH-HHHHH
Confidence 34456688999864 2222222334443211111111334444445566778888888655456666543321 12222
Q ss_pred Hhhc-CCCccEEEE
Q 032952 85 VDSH-NKPIPAILE 97 (130)
Q Consensus 85 i~~~-~~~~P~Iv~ 97 (130)
++.+ +...|+|+.
T Consensus 82 ~~~~~~~~iPvV~~ 95 (293)
T 3l6u_A 82 IEEAKKAGIPVFAI 95 (293)
T ss_dssp HHHHHHTTCCEEEE
T ss_pred HHHHHHcCCCEEEe
Confidence 2322 267897774
No 41
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=35.22 E-value=1.5e+02 Score=22.85 Aligned_cols=56 Identities=14% Similarity=0.249 Sum_probs=33.1
Q ss_pred HHHHhcCCCeeEEEEehhh---HHHHHHHHhhcCCCccEEEEcCCCCCCCChhhHHHHHHHHhh
Q 032952 59 FKEFTSREDIAIVLISQYV---ANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNL 119 (130)
Q Consensus 59 ~~~l~~~~digIIlIte~~---a~~i~~~i~~~~~~~P~Iv~IPs~~g~~~~~~d~I~~~Vk~a 119 (130)
++++++++++-+++|+-.- ++.+...++ ...++++|=|--... .+-..|.+.+++.
T Consensus 81 ~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~---aGk~Vl~EKP~a~~~--~ea~~l~~~a~~~ 139 (350)
T 3rc1_A 81 YPALLERDDVDAVYVPLPAVLHAEWIDRALR---AGKHVLAEKPLTTDR--PQAERLFAVARER 139 (350)
T ss_dssp HHHHHTCTTCSEEEECCCGGGHHHHHHHHHH---TTCEEEEESSSCSSH--HHHHHHHHHHHHT
T ss_pred HHHHhcCCCCCEEEECCCcHHHHHHHHHHHH---CCCcEEEeCCCCCCH--HHHHHHHHHHHHh
Confidence 4678877777777776443 344444444 667899998864422 2234455555543
No 42
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=35.03 E-value=70 Score=23.92 Aligned_cols=50 Identities=6% Similarity=0.107 Sum_probs=37.8
Q ss_pred cHHHHHHHHHHHhcCCCeeEEEEehh-------hHHHHHHHHhhcC--CCccEEEEcCC
Q 032952 51 TIKQIEDAFKEFTSREDIAIVLISQY-------VANRIRFLVDSHN--KPIPAILEIPS 100 (130)
Q Consensus 51 ~~eei~~~~~~l~~~~digIIlIte~-------~a~~i~~~i~~~~--~~~P~Iv~IPs 100 (130)
+.+++.++|+++.+++++..|+|+-. -.+.+.+.+.+++ ...|+|.-+-+
T Consensus 30 ~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~i~~~l~~~~~~~~kPVia~v~g 88 (240)
T 3rst_A 30 NHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEIKKETKKPIYVSMGS 88 (240)
T ss_dssp CHHHHHHHHHHHHHCTTEEEEEEEEEECCBCHHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CHHHHHHHHHHHHhCCCcEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 45899999999998999988888633 2456777777764 47899877643
No 43
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=34.87 E-value=95 Score=22.45 Aligned_cols=88 Identities=16% Similarity=0.247 Sum_probs=42.3
Q ss_pred hhcccccEEEEEec--hhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHH
Q 032952 7 IRTAASALIAMIAD--EDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFL 84 (130)
Q Consensus 7 ~~~~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~ 84 (130)
+.++..++|+++-. .+....-.+.|++..-....-+..+.+...+.+...+.++.+..+.==|||+..... ..+.
T Consensus 3 L~~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~~~~ 79 (291)
T 3egc_A 3 LRSKRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG---EHDY 79 (291)
T ss_dssp ----CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS---CCHH
T ss_pred CccCCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC---ChHH
Confidence 34456688998863 222222234444322111111233333333456666777777765545677666543 2233
Q ss_pred Hhhc-CCCccEEEE
Q 032952 85 VDSH-NKPIPAILE 97 (130)
Q Consensus 85 i~~~-~~~~P~Iv~ 97 (130)
++.+ +...|+|+.
T Consensus 80 ~~~~~~~~iPvV~~ 93 (291)
T 3egc_A 80 LRTELPKTFPIVAV 93 (291)
T ss_dssp HHHSSCTTSCEEEE
T ss_pred HHHhhccCCCEEEE
Confidence 4444 367887763
No 44
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=34.77 E-value=63 Score=25.65 Aligned_cols=54 Identities=7% Similarity=0.079 Sum_probs=37.6
Q ss_pred EEEEec-hhh-------HHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEeh
Q 032952 15 IAMIAD-EDT-------VVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQ 75 (130)
Q Consensus 15 IaVIGD-~dt-------v~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte 75 (130)
+..+|| +++ .--+.-.|++.. +..-..+++++|+.+.++++=+++++-=|++.-
T Consensus 40 vilvg~dpaS~~Yv~~k~k~~~~~Gi~~~-------~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVql 101 (286)
T 4a5o_A 40 VILVGTDPASQVYVAHKRKDCEEVGFLSQ-------AYDLPAETSQDDLLALIDRLNDDPAIDGILVQL 101 (286)
T ss_dssp EEEESCCHHHHHHHHHHHHHHHHTTCEEE-------EEEECTTCCHHHHHHHHHHHHTCTTCCEEEECS
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeEE-------EEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcC
Confidence 555676 444 234566899765 555566788999999999998777875555553
No 45
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=34.01 E-value=1.5e+02 Score=22.70 Aligned_cols=55 Identities=9% Similarity=0.098 Sum_probs=30.7
Q ss_pred HHHHhcCCCeeEEEEehh---hHHHHHHHHhhcCCCccEEEEcCCCCCCCChhhHHHHHHHHh
Q 032952 59 FKEFTSREDIAIVLISQY---VANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKN 118 (130)
Q Consensus 59 ~~~l~~~~digIIlIte~---~a~~i~~~i~~~~~~~P~Iv~IPs~~g~~~~~~d~I~~~Vk~ 118 (130)
++++++++++-+++|+-. -++.+...++ ...++++|=|--... .+-..|.+..++
T Consensus 67 ~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~---~gk~v~~EKP~a~~~--~~~~~l~~~a~~ 124 (354)
T 3q2i_A 67 LTDMLAQTDADIVILTTPSGLHPTQSIECSE---AGFHVMTEKPMATRW--EDGLEMVKAADK 124 (354)
T ss_dssp HHHHHHHCCCSEEEECSCGGGHHHHHHHHHH---TTCEEEECSSSCSSH--HHHHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEECCCcHHHHHHHHHHHH---CCCCEEEeCCCcCCH--HHHHHHHHHHHH
Confidence 466777667766666543 2344444444 557888888753322 222445555554
No 46
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=30.14 E-value=51 Score=24.15 Aligned_cols=91 Identities=14% Similarity=0.192 Sum_probs=34.7
Q ss_pred CchhhhcccccEEEEEec-hhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHH
Q 032952 3 NRPQIRTAASALIAMIAD-EDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRI 81 (130)
Q Consensus 3 ~~~~~~~~~~~kIaVIGD-~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i 81 (130)
.-.++.++..+.|+++-+ .+....-.+.|++..-....-...+.+...+.+ -.+.++.++.+.==|||+......+
T Consensus 3 ~Ar~L~~~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~-~~~~~~~l~~~~vdgiIi~~~~~~~-- 79 (289)
T 3k9c_A 3 LAQKLRQASSRLLGVVFELQQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRA-EKVAVQALMRERCEAAILLGTRFDT-- 79 (289)
T ss_dssp ----------CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBC-HHHHHHHHTTTTEEEEEEETCCCCH--
T ss_pred hhhhhhcCCCCEEEEEEecCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHH-HHHHHHHHHhCCCCEEEEECCCCCH--
Confidence 334556666788998873 112222234444332111111112222111112 4566777764433466666533322
Q ss_pred HHHHhhcCCCccEEEE
Q 032952 82 RFLVDSHNKPIPAILE 97 (130)
Q Consensus 82 ~~~i~~~~~~~P~Iv~ 97 (130)
+.++.+....|+|+.
T Consensus 80 -~~~~~~~~~iPvV~i 94 (289)
T 3k9c_A 80 -DELGALADRVPALVV 94 (289)
T ss_dssp -HHHHHHHTTSCEEEE
T ss_pred -HHHHHHHcCCCEEEE
Confidence 223333236897763
No 47
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=30.03 E-value=94 Score=28.24 Aligned_cols=83 Identities=12% Similarity=0.117 Sum_probs=51.3
Q ss_pred ceeEEecCCCcHHHHHHH----HHHHhcCCCeeEEEEe--------hhhHHHHHH---HHhhc-----CCCccEEEEcCC
Q 032952 41 TNYLIVDSKTTIKQIEDA----FKEFTSREDIAIVLIS--------QYVANRIRF---LVDSH-----NKPIPAILEIPS 100 (130)
Q Consensus 41 ~nf~v~~~~~~~eei~~~----~~~l~~~~digIIlIt--------e~~a~~i~~---~i~~~-----~~~~P~Iv~IPs 100 (130)
-||.=..-..+.+.+.++ |+-+++++++-.|||+ +.++..++- -+.++ ....|+||-+-+
T Consensus 302 ANFlDvGGga~~e~v~~~~~~~l~ii~~d~~vk~ilvNIfGGI~~cd~VA~tf~GIi~A~k~~~~~~~~~~vPiVVRl~G 381 (829)
T 3pff_A 302 ANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGG 381 (829)
T ss_dssp CEEEEEESCCCHHHHHHHHHHHHHHTTSSCCTTCEEEEECBCBCSSCCHHHHHHHHHHHHHHHHHHHHHTTEEEEEECBS
T ss_pred ceeEEecCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCccchHHHHHHHhHHHHHHHHhhhhcccCCceEEEECCC
Confidence 578876666777888777 7777778887777764 456633332 23332 246899999976
Q ss_pred CCCCCChhhHHHHHHHHhhcccCCcc
Q 032952 101 KDHPYDPAQDSVLSRVKNLVSVESVA 126 (130)
Q Consensus 101 ~~g~~~~~~d~I~~~Vk~aiGidi~~ 126 (130)
.+ ++.++. |++-.-+-+|+.|..
T Consensus 382 tN--~eeg~~-il~~~g~~lgl~i~v 404 (829)
T 3pff_A 382 PN--YQEGLR-VMGEVGKTTGIPIHV 404 (829)
T ss_dssp TT--HHHHHH-HHHHHHHHHCCCEEE
T ss_pred CC--HHHHHH-HHHhCccccCCcEEE
Confidence 55 334444 444444555766643
No 48
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=29.90 E-value=71 Score=20.01 Aligned_cols=40 Identities=15% Similarity=0.080 Sum_probs=26.8
Q ss_pred cEEEEEec-hhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhc
Q 032952 13 ALIAMIAD-EDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTS 64 (130)
Q Consensus 13 ~kIaVIGD-~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~ 64 (130)
..+.+||| ..-+.+.+-+|+..+ .+.. ..+..+.+.+++.
T Consensus 92 ~~~~~vgD~~~di~~a~~~G~~~i--------~~~~----~~~~~~~l~~~~~ 132 (137)
T 2pr7_A 92 RDCVLVDDSILNVRGAVEAGLVGV--------YYQQ----FDRAVVEIVGLFG 132 (137)
T ss_dssp GGEEEEESCHHHHHHHHHHTCEEE--------ECSC----HHHHHHHHHHHHT
T ss_pred ccEEEEcCCHHHHHHHHHCCCEEE--------EeCC----hHHHHHHHHHHhC
Confidence 46889999 445888999999553 3322 3666666666653
No 49
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}
Probab=29.78 E-value=26 Score=23.99 Aligned_cols=41 Identities=12% Similarity=0.009 Sum_probs=26.7
Q ss_pred ccEEEEEec-hhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhc
Q 032952 12 SALIAMIAD-EDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTS 64 (130)
Q Consensus 12 ~~kIaVIGD-~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~ 64 (130)
...+.+||| ..-+.+.+.+|+..+ .+... +++++.++.+++
T Consensus 167 ~~~~~~igD~~~Di~~a~~aG~~~~--------~~~~~----~~~~~~l~~~l~ 208 (211)
T 2i6x_A 167 PEETLFIDDGPANVATAERLGFHTY--------CPDNG----ENWIPAITRLLR 208 (211)
T ss_dssp GGGEEEECSCHHHHHHHHHTTCEEE--------CCCTT----CCCHHHHHHHHT
T ss_pred hHHeEEeCCCHHHHHHHHHcCCEEE--------EECCH----HHHHHHHHHHHh
Confidence 356889999 444888999999653 33332 456666666653
No 50
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}
Probab=29.28 E-value=70 Score=27.47 Aligned_cols=73 Identities=14% Similarity=0.234 Sum_probs=46.6
Q ss_pred hhcccccEEEEEechhhHHHHH--------------------HhcccccccCCcceeEE-ecCCC-----cHHHHHHHHH
Q 032952 7 IRTAASALIAMIADEDTVVGFL--------------------LAGVGNVDLRRKTNYLI-VDSKT-----TIKQIEDAFK 60 (130)
Q Consensus 7 ~~~~~~~kIaVIGD~dtv~GFr--------------------LaGi~~~~~~~~~nf~v-~~~~~-----~~eei~~~~~ 60 (130)
.|+.....++||.|-+-|+|+= ++||+. |++ .|-.| +.+++.++++
T Consensus 85 ~yt~kgn~VaVVTDG~aILGLGDiG~~agmpImeGKl~Lyk~~aGId~--------lPI~LD~gt~~~~~d~defve~v~ 156 (487)
T 3nv9_A 85 FYSLRGNFVGVVSDSTRVLGDGDVTPPGGLGVMEGKALLMKYLGGIDA--------VPICIDSKNKEGKNDPDAVIEFVQ 156 (487)
T ss_dssp HHSGGGGEEEEEECSSSBGGGBCCCGGGGHHHHHHHHHHHHHHHCCEE--------EEEECCCBCTTSCBCHHHHHHHHH
T ss_pred hhcccCCEEEEEEcCceeeeccccccccCCchhhhHHHHHHhcCCCce--------eeeEEeCCCccccCCHHHHHHHHH
Confidence 3555567899999999998863 455542 453 33220 4699999888
Q ss_pred HHhcCCCeeEEEEehhhHHHHHHHHhhcC
Q 032952 61 EFTSREDIAIVLISQYVANRIRFLVDSHN 89 (130)
Q Consensus 61 ~l~~~~digIIlIte~~a~~i~~~i~~~~ 89 (130)
.+. +.+|.|=+.+.-+....+.+++|+
T Consensus 157 ~~~--P~fG~InlEDf~ap~af~il~ryr 183 (487)
T 3nv9_A 157 RIQ--HTFGAINLEDISQPNCYKILDVLR 183 (487)
T ss_dssp HHG--GGCSEEEECSCCTTHHHHHHHHHH
T ss_pred HhC--CCCCeecHhhcCCchHHHHHHHHH
Confidence 775 778777666554444444444443
No 51
>3b48_A Uncharacterized protein; enterococcus faecalis V583, structural genomics, PSI-2, PROT structure initiative; 2.21A {Enterococcus faecalis} SCOP: c.54.1.2
Probab=29.11 E-value=1.4e+02 Score=20.39 Aligned_cols=52 Identities=10% Similarity=0.227 Sum_probs=31.4
Q ss_pred eeEEEEeh--hhHHHHHHHHhhc-CCCccEEEEcCCCC-CCCChhhHHHHHHHHhh
Q 032952 68 IAIVLISQ--YVANRIRFLVDSH-NKPIPAILEIPSKD-HPYDPAQDSVLSRVKNL 119 (130)
Q Consensus 68 igIIlIte--~~a~~i~~~i~~~-~~~~P~Iv~IPs~~-g~~~~~~d~I~~~Vk~a 119 (130)
+|||++|- ++++-+.+.++-. ....+-+..+.... ++.+.-.+.+++.+++.
T Consensus 6 igIvivsHg~~lA~gl~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~i~~ai~~~ 61 (135)
T 3b48_A 6 ADILLVSHSKMITDGIKEMIEQMNASEEITIHSLGGTSDGSLGSDPMKIIDTINEA 61 (135)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTTC--CCCEEEECCSCSSSSSSCCHHHHHHHHHHS
T ss_pred ccEEEEECCHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 78999986 5889899888876 22223455555432 33333345566666653
No 52
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A
Probab=28.77 E-value=76 Score=23.91 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=39.3
Q ss_pred ccccEEEEEechhh--------HHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehh
Q 032952 10 AASALIAMIADEDT--------VVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQY 76 (130)
Q Consensus 10 ~~~~kIaVIGD~dt--------v~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~ 76 (130)
...+++++||++-. -..|+..|++.. |...+ .+++++.++++.+. ..++.=+.+|--
T Consensus 10 ~~t~~~~liG~pi~hs~sp~~h~~~~~~~g~~~~-------y~~~~--~~~~~l~~~i~~l~-~~~~~G~nvtiP 74 (275)
T 2hk9_A 10 AQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAV-------YLAFE--INPEELKKAFEGFK-ALKVKGINVTVP 74 (275)
T ss_dssp TTCEEEEEEESSCTTCSHHHHHHHHHHHHTCSEE-------EEEEE--CCGGGHHHHHHHHH-HHTCCEEEECTT
T ss_pred CCceEEEEECCCcccccCHHHHHHHHHHcCCCcE-------EEEEE--CCHHHHHHHHHHHH-hCCCCEEEECcc
Confidence 44467899999632 258999999876 66543 34588888888775 356666677743
No 53
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Probab=28.61 E-value=33 Score=23.30 Aligned_cols=25 Identities=16% Similarity=0.470 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhcCCC-eeEEEEehh
Q 032952 52 IKQIEDAFKEFTSRED-IAIVLISQY 76 (130)
Q Consensus 52 ~eei~~~~~~l~~~~d-igIIlIte~ 76 (130)
..|++++|+++.+.+. .|+|+++..
T Consensus 11 ~~evEe~l~RI~~~kgV~G~iIln~~ 36 (106)
T 2hz5_A 11 MAEVEETLKRLQSQKGVQGIIVVNTE 36 (106)
T ss_dssp ----CHHHHHHHTSTTEEEEEEECTT
T ss_pred HHHHHHHHHHHhcCCCceEEEEEcCC
Confidence 3789999999987655 788888763
No 54
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=28.28 E-value=1.9e+02 Score=21.77 Aligned_cols=76 Identities=8% Similarity=0.010 Sum_probs=41.9
Q ss_pred ccccEEEEEech-h------hHHHHHHh----cccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhH
Q 032952 10 AASALIAMIADE-D------TVVGFLLA----GVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVA 78 (130)
Q Consensus 10 ~~~~kIaVIGD~-d------tv~GFrLa----Gi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a 78 (130)
...++|++|+.. + -..||+-+ |++ +.++. ..+.+.++..+++++++.+..+||+..++.++
T Consensus 182 ~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~-------~~~v~-~~~~~~~~~~~~~~~ll~~~~~ai~~~nD~~A 253 (348)
T 3bil_A 182 NNALPIGYLSGPMDTSTGRERLEDFKAACANSKIG-------EQLVF-LGGYEQSVGFEGATKLLDQGAKTLFAGDSMMT 253 (348)
T ss_dssp TTCCSEEEECCCTTSHHHHHHHHHHHHHHHHTTCC-------CCEEE-CCCSSHHHHHHHHHHHHHTTCSEEEESSHHHH
T ss_pred CCCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCcC-------ccEEE-cCCCCHHHHHHHHHHHHcCCCCEEEEcChHHH
Confidence 356789999764 2 23455422 331 11333 22335577788888888653355555566666
Q ss_pred HHHHHHHhhcCCCcc
Q 032952 79 NRIRFLVDSHNKPIP 93 (130)
Q Consensus 79 ~~i~~~i~~~~~~~P 93 (130)
--+-..+.+.....|
T Consensus 254 ~g~~~al~~~G~~vP 268 (348)
T 3bil_A 254 IGVIEACHKAGLVIG 268 (348)
T ss_dssp HHHHHHHHHTTCCBT
T ss_pred HHHHHHHHHcCCCCC
Confidence 555555655443334
No 55
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}
Probab=27.82 E-value=90 Score=21.51 Aligned_cols=25 Identities=16% Similarity=0.074 Sum_probs=19.2
Q ss_pred cccEEEEEec-hhhHHHHHHhccccc
Q 032952 11 ASALIAMIAD-EDTVVGFLLAGVGNV 35 (130)
Q Consensus 11 ~~~kIaVIGD-~dtv~GFrLaGi~~~ 35 (130)
....+.+||| ..-+.+.+-+|+..+
T Consensus 181 ~~~~~i~vGD~~~Di~~a~~aG~~~i 206 (247)
T 3dv9_A 181 KPNEALVIENAPLGVQAGVAAGIFTI 206 (247)
T ss_dssp CGGGEEEEECSHHHHHHHHHTTSEEE
T ss_pred ChhheEEEeCCHHHHHHHHHCCCeEE
Confidence 3356889999 556889999998654
No 56
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=27.25 E-value=96 Score=19.70 Aligned_cols=44 Identities=9% Similarity=0.143 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCCeeEEEEehhh------HHHHHHHHhhcCCCccEEEEcCCC
Q 032952 56 EDAFKEFTSREDIAIVLISQYV------ANRIRFLVDSHNKPIPAILEIPSK 101 (130)
Q Consensus 56 ~~~~~~l~~~~digIIlIte~~------a~~i~~~i~~~~~~~P~Iv~IPs~ 101 (130)
.+++..+.....+.+|++.-.+ .+.++. +.++ ...|+|+.-...
T Consensus 39 ~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~-l~~~-~~~~ii~ls~~~ 88 (140)
T 3h5i_A 39 EAAVEKVSGGWYPDLILMDIELGEGMDGVQTALA-IQQI-SELPVVFLTAHT 88 (140)
T ss_dssp HHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHH-HHHH-CCCCEEEEESSS
T ss_pred HHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHH-HHhC-CCCCEEEEECCC
Confidence 3444444333567788886443 222222 2222 457877755443
No 57
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=27.22 E-value=90 Score=23.83 Aligned_cols=59 Identities=8% Similarity=0.180 Sum_probs=37.3
Q ss_pred HHHHhcCCCeeEEEEehhhHHHHHHHHhhcCCCccEEEEcCCCCCCCChhhHHHHHHHHhh
Q 032952 59 FKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNL 119 (130)
Q Consensus 59 ~~~l~~~~digIIlIte~~a~~i~~~i~~~~~~~P~Iv~IPs~~g~~~~~~d~I~~~Vk~a 119 (130)
+++|++++++-+|+|+..-.....-.+..++..+++++|=|--... .+-+.|.+.++++
T Consensus 67 ~~~ll~~~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~t~--~ea~~l~~~~~~~ 125 (390)
T 4h3v_A 67 WRTLLERDDVQLVDVCTPGDSHAEIAIAALEAGKHVLCEKPLANTV--AEAEAMAAAAAKA 125 (390)
T ss_dssp HHHHTTCTTCSEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSH--HHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEeCChHHHHHHHHHHHHcCCCceeecCcccch--hHHHHHHHHHHHH
Confidence 5678888899888887654444444444444678999999875532 2234455555553
No 58
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=27.17 E-value=2e+02 Score=21.63 Aligned_cols=88 Identities=14% Similarity=0.106 Sum_probs=41.1
Q ss_pred hcccccEEEEEec--hhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHH
Q 032952 8 RTAASALIAMIAD--EDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLV 85 (130)
Q Consensus 8 ~~~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~i 85 (130)
..+..+.|+++-. .+....-.+.|++..-....-...+.+.+.+.+.-.+.++.++.+.==|||+......+..-+.+
T Consensus 66 ~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l 145 (355)
T 3e3m_A 66 TTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHTEQTIRLL 145 (355)
T ss_dssp -----CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCCHHHHHHH
T ss_pred hcCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHH
Confidence 3445578998853 22223333445543211111112333333344556677887876655577777644333222223
Q ss_pred hhcCCCccEEEE
Q 032952 86 DSHNKPIPAILE 97 (130)
Q Consensus 86 ~~~~~~~P~Iv~ 97 (130)
.+ ...|+|+.
T Consensus 146 ~~--~~iPvV~i 155 (355)
T 3e3m_A 146 QR--ASIPIVEI 155 (355)
T ss_dssp HH--CCSCEEEE
T ss_pred Hh--CCCCEEEE
Confidence 32 67898764
No 59
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=26.88 E-value=62 Score=22.16 Aligned_cols=52 Identities=2% Similarity=0.031 Sum_probs=29.8
Q ss_pred HHHHhcCCCeeEEEEehhhHH-HHHHHHhhcCCCccEEEEcCCCCCCCChhhHHHHHHHHhh
Q 032952 59 FKEFTSREDIAIVLISQYVAN-RIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKNL 119 (130)
Q Consensus 59 ~~~l~~~~digIIlIte~~a~-~i~~~i~~~~~~~P~Iv~IPs~~g~~~~~~d~I~~~Vk~a 119 (130)
+.++-..-|+++|++...... .+++.++ ...+.|+.-|+.. ...+.+.++++
T Consensus 71 l~~l~~~vDlvvi~vp~~~~~~vv~~~~~---~gi~~i~~~~g~~------~~~l~~~a~~~ 123 (144)
T 2d59_A 71 VLDIPDKIEVVDLFVKPKLTMEYVEQAIK---KGAKVVWFQYNTY------NREASKKADEA 123 (144)
T ss_dssp GGGCSSCCSEEEECSCHHHHHHHHHHHHH---HTCSEEEECTTCC------CHHHHHHHHHT
T ss_pred HHHcCCCCCEEEEEeCHHHHHHHHHHHHH---cCCCEEEECCCch------HHHHHHHHHHc
Confidence 444444668999998876554 3433333 2245666555421 35677777753
No 60
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=25.92 E-value=1.1e+02 Score=22.13 Aligned_cols=89 Identities=17% Similarity=0.244 Sum_probs=31.2
Q ss_pred hhcccccEEEEEec--hhhHHHHHHhcccccccCCcceeEEe-cCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHH
Q 032952 7 IRTAASALIAMIAD--EDTVVGFLLAGVGNVDLRRKTNYLIV-DSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRF 83 (130)
Q Consensus 7 ~~~~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~nf~v~-~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~ 83 (130)
++++...+|+++-. .+....-.+.|++..-....-...+. +.+.+.++..+.++.+..+.==|||+......+..-+
T Consensus 3 L~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~ 82 (290)
T 3clk_A 3 LVKKSSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIALTDDNLQ 82 (290)
T ss_dssp -----CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC----CHH
T ss_pred cccccCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecccCCHHHHH
Confidence 34455678999853 22222223344432211111112333 2222234445567777755434666665443222112
Q ss_pred HHhhcCCCccEEEE
Q 032952 84 LVDSHNKPIPAILE 97 (130)
Q Consensus 84 ~i~~~~~~~P~Iv~ 97 (130)
.+. +...|+|+.
T Consensus 83 ~l~--~~~iPvV~~ 94 (290)
T 3clk_A 83 LLQ--SSDVPYCFL 94 (290)
T ss_dssp HHH--CC--CEEEE
T ss_pred HHH--hCCCCEEEE
Confidence 222 256787663
No 61
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=25.62 E-value=2.6e+02 Score=22.33 Aligned_cols=85 Identities=7% Similarity=0.048 Sum_probs=49.5
Q ss_pred cEEEEEechhhHHHHHH-----hcccccccCCcceeEEecCC--CcHHHHHHHHHHHhcCCCeeEEEEe---hhhHH-HH
Q 032952 13 ALIAMIADEDTVVGFLL-----AGVGNVDLRRKTNYLIVDSK--TTIKQIEDAFKEFTSREDIAIVLIS---QYVAN-RI 81 (130)
Q Consensus 13 ~kIaVIGD~dtv~GFrL-----aGi~~~~~~~~~nf~v~~~~--~~~eei~~~~~~l~~~~digIIlIt---e~~a~-~i 81 (130)
-+||+|+-.-+++.-.+ .|++-. .++-...+ .. -++.+.|+.|.++++.-+|++- +...+ ++
T Consensus 169 G~vgivSqSG~l~~~i~~~~~~~g~G~S------~~VsiGn~~~~d-~~~~D~l~~~~~Dp~T~~I~l~gEi~g~~e~~~ 241 (334)
T 3mwd_B 169 GSVAYVSRSGGMSNELNNIISRTTDGVY------EGVAIGGDRYPG-STFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKI 241 (334)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHHSSCEE------EEEECCSSSSCS-SCHHHHHHHHHTCTTCCEEEEEEESSSSHHHHH
T ss_pred CCEEEEeCchHHHHHHHHHHHhcCCCeE------EEEECCCCccCC-CCHHHHHHHHhcCCCCCEEEEEEecCChHHHHH
Confidence 46999999888765443 344221 13322221 11 2355677777788888877775 22332 22
Q ss_pred HHHHhhcCCCccEEEEcCCCCCC
Q 032952 82 RFLVDSHNKPIPAILEIPSKDHP 104 (130)
Q Consensus 82 ~~~i~~~~~~~P~Iv~IPs~~g~ 104 (130)
-+.+.+....+|+|+.+.++..+
T Consensus 242 ~~~~r~~~~~KPVV~~kaGrs~~ 264 (334)
T 3mwd_B 242 CRGIKEGRLTKPIVCWCIGTCAT 264 (334)
T ss_dssp HHHHHTTSCCSCEEEEEECTTCC
T ss_pred HHHHHhhcCCCCEEEEEcCCCcc
Confidence 22232223679999999887754
No 62
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=25.43 E-value=2.4e+02 Score=22.99 Aligned_cols=58 Identities=10% Similarity=0.194 Sum_probs=35.8
Q ss_pred cccEEEEEechhhHHHHH----HhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCC-ee-EEEEehhh
Q 032952 11 ASALIAMIADEDTVVGFL----LAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSRED-IA-IVLISQYV 77 (130)
Q Consensus 11 ~~~kIaVIGD~dtv~GFr----LaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~d-ig-IIlIte~~ 77 (130)
..+|++|.||.+.+.++. =.|++.+ .++... . .++.++.++++++... .+ .|+++.+.
T Consensus 311 ~gkrv~i~~~~~~~~~l~~~L~elG~~vv-------~v~~~~-~-~~~~~~~~~~ll~~~~~~~~~v~~~~d~ 374 (458)
T 1mio_B 311 QGKKVALLGDPDEIIALSKFIIELGAIPK-------YVVTGT-P-GMKFQKEIDAMLAEAGIEGSKVKVEGDF 374 (458)
T ss_dssp TTCEEEEEECHHHHHHHHHHHHTTTCEEE-------EEEESS-C-CHHHHHHHHHHHHTTTCCSCEEEESCBH
T ss_pred CCCEEEEEcCchHHHHHHHHHHHCCCEEE-------EEEeCC-C-CHHHHHHHHHHHHhcCCCCCEEEECCCH
Confidence 458999999999888863 3566554 333332 2 3566777887776532 33 45555343
No 63
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=25.25 E-value=1.5e+02 Score=21.66 Aligned_cols=89 Identities=13% Similarity=0.158 Sum_probs=39.6
Q ss_pred hhcccccEEEEEech-------hhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHH
Q 032952 7 IRTAASALIAMIADE-------DTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVAN 79 (130)
Q Consensus 7 ~~~~~~~kIaVIGD~-------dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~ 79 (130)
+..+..+.||++-.. +....-.+.|++..-....-+..+.+.+.+.+.-.+.++.+..+.==|||++.....+
T Consensus 17 L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 96 (305)
T 3huu_A 17 LITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDD 96 (305)
T ss_dssp ----CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTTC
T ss_pred hhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCCc
Confidence 344566889988543 2222333445543211111112333333333444566666665444577776543322
Q ss_pred HHHHHHhhcCCCccEEEE
Q 032952 80 RIRFLVDSHNKPIPAILE 97 (130)
Q Consensus 80 ~i~~~i~~~~~~~P~Iv~ 97 (130)
..-+.+.+ ...|+|+.
T Consensus 97 ~~~~~l~~--~~iPvV~i 112 (305)
T 3huu_A 97 PIEHLLNE--FKVPYLIV 112 (305)
T ss_dssp HHHHHHHH--TTCCEEEE
T ss_pred HHHHHHHH--cCCCEEEE
Confidence 22222322 67897763
No 64
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=25.01 E-value=1.8e+02 Score=20.44 Aligned_cols=80 Identities=11% Similarity=-0.005 Sum_probs=41.4
Q ss_pred ccccEEEEEech-h-hHHHHHHhccccccc-CCcceeEEecCCCcHHHHHHHHHHHhcCC--Ce-eEEEEehhhHHHHHH
Q 032952 10 AASALIAMIADE-D-TVVGFLLAGVGNVDL-RRKTNYLIVDSKTTIKQIEDAFKEFTSRE--DI-AIVLISQYVANRIRF 83 (130)
Q Consensus 10 ~~~~kIaVIGD~-d-tv~GFrLaGi~~~~~-~~~~nf~v~~~~~~~eei~~~~~~l~~~~--di-gIIlIte~~a~~i~~ 83 (130)
...++|++++.. + ...--|+.|+...=. ++-+...+...+.+.++..+++++++.+. ++ ||+..++.++--+-.
T Consensus 118 ~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~ 197 (272)
T 3o74_A 118 SAPRSIALIGARPELSVSQARAGGFDEALQGYTGEVRRYQGEAFSRECGQRLMQQLIDDLGGLPDALVTTSYVLLQGVFD 197 (272)
T ss_dssp TCCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSEEEEEEESSSSHHHHHHHHHHHHHHHTSCCSEEEESSHHHHHHHHH
T ss_pred CCCcEEEEEecCCCCccHHHHHHHHHHHHHHcCCChheeecCCCCHHHHHHHHHHHHhcCCCCCcEEEEeCchHHHHHHH
Confidence 456889999753 2 222234444422100 01111122233445688888888888643 34 555556666655555
Q ss_pred HHhhcC
Q 032952 84 LVDSHN 89 (130)
Q Consensus 84 ~i~~~~ 89 (130)
.+.+..
T Consensus 198 al~~~g 203 (272)
T 3o74_A 198 TLQARP 203 (272)
T ss_dssp HHHTSC
T ss_pred HHHHcC
Confidence 565543
No 65
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.80 E-value=74 Score=20.57 Aligned_cols=46 Identities=9% Similarity=0.007 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHHhhc--CCCccEEEEcCCCC
Q 032952 53 KQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSH--NKPIPAILEIPSKD 102 (130)
Q Consensus 53 eei~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~--~~~~P~Iv~IPs~~ 102 (130)
+++.++++ +....++++.++..+.....+..+ ....|.+...+++.
T Consensus 21 ~~v~kai~----~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~ 68 (99)
T 3j21_Z 21 NETIRLAK----TGGAKLIIVAKNAPKEIKDDIYYYAKLSDIPVYEFEGTSV 68 (99)
T ss_dssp HHHHHHHH----HTCCSEEEEECCCCHHHHHHHHHHHHHTTCCEEEECCCSC
T ss_pred HHHHHHHH----cCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCCHH
Confidence 44444443 566788888888777777777654 36688877767655
No 66
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=24.79 E-value=2.3e+02 Score=21.43 Aligned_cols=84 Identities=15% Similarity=0.151 Sum_probs=44.6
Q ss_pred cccEEEEEech---------hhHHHHHHhcccccccC----Cc-ceeEEecCCCcHHHHHHHHHHHhcCCCe-eEEEE-e
Q 032952 11 ASALIAMIADE---------DTVVGFLLAGVGNVDLR----RK-TNYLIVDSKTTIKQIEDAFKEFTSREDI-AIVLI-S 74 (130)
Q Consensus 11 ~~~kIaVIGD~---------dtv~GFrLaGi~~~~~~----~~-~nf~v~~~~~~~eei~~~~~~l~~~~di-gIIlI-t 74 (130)
+..+|+++... +...|+.++ ++.++.. +. -.+++.+...+.+...+.+++|+.++.+ |||.. +
T Consensus 6 ~~~~IG~~~p~sg~~~~~~~~~~~g~~~a-~~~~N~~ggi~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 84 (385)
T 1pea_A 6 ERPLIGLLFSETGVTADIERSQRYGALLA-VEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYM 84 (385)
T ss_dssp --CEEEEECCSSSTTHHHHHHHHHHHHHH-HHHHHTTTTBTTBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEECCS
T ss_pred CCeEEEEEECCCCcchhcCHHHHHHHHHH-HHHhccccCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECCCc
Confidence 44789998753 234555553 1111110 11 1245555555667778889999864554 45443 3
Q ss_pred hhhHHHHHHHHhhcCCCccEEEE
Q 032952 75 QYVANRIRFLVDSHNKPIPAILE 97 (130)
Q Consensus 75 e~~a~~i~~~i~~~~~~~P~Iv~ 97 (130)
......+.+.+.+ ...|+|..
T Consensus 85 s~~~~~~~~~~~~--~~iP~v~~ 105 (385)
T 1pea_A 85 SHTRKAVMPVVER--ADALLCYP 105 (385)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEC
T ss_pred hHHHHHHHHHHHh--cCceEEEC
Confidence 3344455555555 45787764
No 67
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=24.55 E-value=1.4e+02 Score=20.31 Aligned_cols=43 Identities=16% Similarity=0.356 Sum_probs=26.6
Q ss_pred cEEEEEech-hhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhc
Q 032952 13 ALIAMIADE-DTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTS 64 (130)
Q Consensus 13 ~kIaVIGD~-dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~ 64 (130)
..+.+|||. .-+.+.+.+|+..+ .+ ......+++.+.+..+..
T Consensus 138 ~~~~~igD~~~Di~~a~~aG~~~i--------~v-~~g~~~~~~~~~l~~~~~ 181 (187)
T 2wm8_A 138 SQMIFFDDERRNIVDVSKLGVTCI--------HI-QNGMNLQTLSQGLETFAK 181 (187)
T ss_dssp GGEEEEESCHHHHHHHHTTTCEEE--------EC-SSSCCHHHHHHHHHHHHH
T ss_pred HHEEEEeCCccChHHHHHcCCEEE--------EE-CCCCChHHHHHHHHHHHH
Confidence 457888884 44567788888643 23 333345677777776653
No 68
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=24.33 E-value=2.1e+02 Score=20.79 Aligned_cols=84 Identities=17% Similarity=0.185 Sum_probs=41.3
Q ss_pred cccccEEEEEechh--hHHHHHHhccccccc-CCcceeEEecCCCcHHHHHHHHHHHhcCC----Ce-eEEEEehhhHHH
Q 032952 9 TAASALIAMIADED--TVVGFLLAGVGNVDL-RRKTNYLIVDSKTTIKQIEDAFKEFTSRE----DI-AIVLISQYVANR 80 (130)
Q Consensus 9 ~~~~~kIaVIGD~d--tv~GFrLaGi~~~~~-~~~~nf~v~~~~~~~eei~~~~~~l~~~~----di-gIIlIte~~a~~ 80 (130)
....++|++++... ...--|+.|+...=. ++-+ +.+...+.+.++..+++++++... +. ||+..++.++--
T Consensus 128 ~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~d~~A~g 206 (295)
T 3hcw_A 128 EQGVDELIFITEKGNFEVSKDRIQGFETVASQFNLD-YQIIETSNEREVILNYMQNLHTRLKDPNIKQAIISLDAMLHLA 206 (295)
T ss_dssp HHCCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCE-EEEEEECSCHHHHHHHHHHHHHHHTCTTSCEEEEESSHHHHHH
T ss_pred HcCCccEEEEcCCccchhHHHHHHHHHHHHHHcCCC-eeEEeccCCHHHHHHHHHHHHhhcccCCCCcEEEECChHHHHH
Confidence 34568999997532 122223333321100 0000 112222345677788888887532 44 555555555655
Q ss_pred HHHHHhhcCCCcc
Q 032952 81 IRFLVDSHNKPIP 93 (130)
Q Consensus 81 i~~~i~~~~~~~P 93 (130)
+-..+.+.....|
T Consensus 207 ~~~al~~~g~~vP 219 (295)
T 3hcw_A 207 ILSVLYELNIEIP 219 (295)
T ss_dssp HHHHHHHTTCCTT
T ss_pred HHHHHHHcCCCCC
Confidence 5555666543334
No 69
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=24.22 E-value=1.9e+02 Score=20.72 Aligned_cols=83 Identities=13% Similarity=0.277 Sum_probs=41.1
Q ss_pred hhcccccEEEEEech--hhHHHHHHhcccccccCCcce-eEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHH
Q 032952 7 IRTAASALIAMIADE--DTVVGFLLAGVGNVDLRRKTN-YLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRF 83 (130)
Q Consensus 7 ~~~~~~~kIaVIGD~--dtv~GFrLaGi~~~~~~~~~n-f~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~ 83 (130)
+.++..+.|+++-.. +....-.+.|++..-....-. ..+.+...+.+.-.+.++.+..+.==|||+.. +
T Consensus 5 L~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~--------~ 76 (277)
T 3hs3_A 5 LYQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA--------F 76 (277)
T ss_dssp ---CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC--------C
T ss_pred hhcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc--------h
Confidence 445566889998542 323333344443321111111 22333333445556677777765545777776 2
Q ss_pred HHhhcC-CCccEEEE
Q 032952 84 LVDSHN-KPIPAILE 97 (130)
Q Consensus 84 ~i~~~~-~~~P~Iv~ 97 (130)
.++.+. ...|+|+.
T Consensus 77 ~~~~~~~~~iPvV~~ 91 (277)
T 3hs3_A 77 TIPPNFHLNTPLVMY 91 (277)
T ss_dssp CCCTTCCCSSCEEEE
T ss_pred HHHHHHhCCCCEEEE
Confidence 344443 67897764
No 70
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=24.17 E-value=1.6e+02 Score=24.80 Aligned_cols=46 Identities=17% Similarity=0.293 Sum_probs=30.2
Q ss_pred cccEEEEEechhhHHHH----HHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcC
Q 032952 11 ASALIAMIADEDTVVGF----LLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSR 65 (130)
Q Consensus 11 ~~~kIaVIGD~dtv~GF----rLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~ 65 (130)
..+|++|.||.+.+.|+ +=.|++.+ +++.. .. .++.++.++++++.
T Consensus 359 ~Gkrv~i~gd~~~~~~la~~L~ElGm~vv-------~v~~~-~~-~~~~~~~~~~ll~~ 408 (519)
T 1qgu_B 359 HGKKFGLYGDPDFVMGLTRFLLELGCEPT-------VILSH-NA-NKRWQKAMNKMLDA 408 (519)
T ss_dssp TTCEEEEESCHHHHHHHHHHHHHTTCEEE-------EEEET-TC-CHHHHHHHHHHHHH
T ss_pred CCCEEEEECCchHHHHHHHHHHHCCCEEE-------EEEeC-CC-CHHHHHHHHHHHHh
Confidence 45899999999999983 34577654 33322 22 25567777777754
No 71
>3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase, protei transport; 1.95A {Drosophila melanogaster} SCOP: d.110.7.1 PDB: 3l9k_A 1z09_A 2e8j_A 1y4o_A
Probab=24.11 E-value=38 Score=22.61 Aligned_cols=24 Identities=13% Similarity=0.470 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhcCCC-eeEEEEehh
Q 032952 53 KQIEDAFKEFTSRED-IAIVLISQY 76 (130)
Q Consensus 53 eei~~~~~~l~~~~d-igIIlIte~ 76 (130)
.|++++|+++.+.+. .|+|+++.+
T Consensus 3 ~eveetl~ri~~~kgV~G~iI~n~~ 27 (97)
T 3l7h_A 3 QEVEETLKRIQSHKGVVGTIVVNNE 27 (97)
T ss_dssp ------CHHHHTSTTEEEEEEEETT
T ss_pred HHHHHHHHHHhcCCCceEEEEECCC
Confidence 478899999987666 788888854
No 72
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=23.99 E-value=1e+02 Score=23.71 Aligned_cols=80 Identities=13% Similarity=0.191 Sum_probs=59.7
Q ss_pred ccEEEEEechhhHHHHHHhcccccccCCcc-------eeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhH-HHHHH
Q 032952 12 SALIAMIADEDTVVGFLLAGVGNVDLRRKT-------NYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVA-NRIRF 83 (130)
Q Consensus 12 ~~kIaVIGD~dtv~GFrLaGi~~~~~~~~~-------nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a-~~i~~ 83 (130)
.++|-+||.-.-|.=-.+..|...|+|+-+ -.+++. ++++.++++.+-.=+-.+++++...+. -++-+
T Consensus 87 gkrvii~gggaqv~qva~gai~eadrhnirgerisvdt~p~vg----e~~l~~av~av~~lpr~~~lvlags~mgg~i~~ 162 (223)
T 1y7p_A 87 GKRVIILGGGALVSQVAIGAISEADRHNLRGERISVDTMPVVG----EEEIAEAVKAVSRLHRAEVLVLAGGIMGGKITE 162 (223)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHHHHHHHTSCCEEEEEEECCS----HHHHHHHHHHGGGSTTEEEEEEESSBCCTHHHH
T ss_pred CcEEEEECCcHHHHHHHHhhcchhhhcccccceeeeecceecC----HHHHHHHHHHHhhccccceeeEecccccchHHH
Confidence 489999999998888888888666554311 123444 488999998777667899999998876 47888
Q ss_pred HHhhcC-CCccEE
Q 032952 84 LVDSHN-KPIPAI 95 (130)
Q Consensus 84 ~i~~~~-~~~P~I 95 (130)
.+++++ ...|.|
T Consensus 163 ~v~~~~~~~i~vi 175 (223)
T 1y7p_A 163 EVKKLRKSGIRVI 175 (223)
T ss_dssp HHHHHGGGTCEEE
T ss_pred HHHHHHHCCCeEE
Confidence 888875 566765
No 73
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=23.84 E-value=1.7e+02 Score=21.42 Aligned_cols=84 Identities=8% Similarity=0.128 Sum_probs=49.3
Q ss_pred cccEEEEEech---------hhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEE--ehhhHH
Q 032952 11 ASALIAMIADE---------DTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLI--SQYVAN 79 (130)
Q Consensus 11 ~~~kIaVIGD~---------dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlI--te~~a~ 79 (130)
..-+|+++... +...|++++ ++.++ ..+-.+++.|...+.+...+.+++++.++.+-.|+. +.....
T Consensus 6 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a-~~~i~-g~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~~~ 83 (362)
T 3snr_A 6 NEITVGISVTTTGPAAALGIPERNALEFV-VKEIS-GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMGSSVTPPSV 83 (362)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHGGGGS-CSEET-TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHHHHH
T ss_pred CCeEEEEEecccCchhhcCHHHHHHHHHH-HHHhC-CeEEEEEEecCCCCHHHHHHHHHHHHhccCceEEEcCCCcHHHH
Confidence 45789999763 344555543 33321 111224455555567888889999998755544443 444555
Q ss_pred HHHHHHhhcCCCccEEEEc
Q 032952 80 RIRFLVDSHNKPIPAILEI 98 (130)
Q Consensus 80 ~i~~~i~~~~~~~P~Iv~I 98 (130)
.+.+.+.+ ...|+|..-
T Consensus 84 ~~~~~~~~--~~ip~v~~~ 100 (362)
T 3snr_A 84 AISNVANE--AQIPHIALA 100 (362)
T ss_dssp HHHHHHHH--HTCCEEESS
T ss_pred HHHHHHHH--cCccEEEec
Confidence 56666665 447887744
No 74
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=23.77 E-value=29 Score=26.67 Aligned_cols=39 Identities=5% Similarity=-0.013 Sum_probs=28.1
Q ss_pred CCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHHhh
Q 032952 48 SKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDS 87 (130)
Q Consensus 48 ~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~i~~ 87 (130)
.+.+..++.+..+ +++..++..||.......++-+.|.+
T Consensus 205 ~eps~~~l~~l~~-~ik~~~v~~if~e~~~~~~~~~~ia~ 243 (284)
T 2prs_A 205 IQPGAQRLHEIRT-QLVEQKATCVFAEPQFRPAVVESVAR 243 (284)
T ss_dssp SCCCHHHHHHHHH-HHHHTTCCEEEECTTSCSHHHHHHTT
T ss_pred CCCCHHHHHHHHH-HHHHcCCCEEEEeCCCChHHHHHHHH
Confidence 4557788888666 55678999999987776665565654
No 75
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=23.29 E-value=2e+02 Score=20.35 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcCCCeeEEEEe
Q 032952 52 IKQIEDAFKEFTSREDIAIVLIS 74 (130)
Q Consensus 52 ~eei~~~~~~l~~~~digIIlIt 74 (130)
.+++.++|++++++.++-+|+.|
T Consensus 53 ~~~I~~~l~~~~~~~~~DlVitt 75 (178)
T 2pbq_A 53 RDLIEKTLIELADEKGCSLILTT 75 (178)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEC
Confidence 68999999999864467788888
No 76
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=23.00 E-value=45 Score=26.72 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=15.6
Q ss_pred chhhhcccccEEEEEech--hhHHH
Q 032952 4 RPQIRTAASALIAMIADE--DTVVG 26 (130)
Q Consensus 4 ~~~~~~~~~~kIaVIGD~--dtv~G 26 (130)
.+..+.+..+.|.+||++ .-|.|
T Consensus 105 ~v~~~~~~Gy~iiiiG~~~HpEV~G 129 (297)
T 3dnf_A 105 AVCQLTREGYFVVLVGEKNHPEVIG 129 (297)
T ss_dssp HHHHHHHTTCEEEEESCTTCHHHHH
T ss_pred HHHHHHhCCCEEEEEecCCCceEEe
Confidence 345566778999999984 34444
No 77
>3ct6_A PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DHAM; mixed alpha beta structure, glycerol metabolism; 1.10A {Lactococcus lactis} SCOP: c.54.1.2 PDB: 3cr3_C*
Probab=22.91 E-value=1.9e+02 Score=19.81 Aligned_cols=51 Identities=20% Similarity=0.327 Sum_probs=28.4
Q ss_pred eeEEEEeh--hhHHHHHHHHhhcCCCccEEEEcCC-CCCCCChhhHHHHHHHHhh
Q 032952 68 IAIVLISQ--YVANRIRFLVDSHNKPIPAILEIPS-KDHPYDPAQDSVLSRVKNL 119 (130)
Q Consensus 68 igIIlIte--~~a~~i~~~i~~~~~~~P~Iv~IPs-~~g~~~~~~d~I~~~Vk~a 119 (130)
+|||++|= ++++-+.+.++-.-...+ |..+.. .+++.+.-.+.|++.+++.
T Consensus 3 igIvivSHg~~lA~gl~~~~~~i~g~~~-i~~~~~~~~~~~~~~~~~i~~ai~~~ 56 (131)
T 3ct6_A 3 YGIVIVSHSPEIASGLKKLIREVAKNIS-LTAIGGLENGEIGTSFDRVMNAIEEN 56 (131)
T ss_dssp EEEEEEESCHHHHHHHHHHHHTTCSSSC-EEEEESCTTSCSSCCHHHHHHHHHHS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHhcCccC-EEEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 67888885 678888887776532223 333322 2233333345566666654
No 78
>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A
Probab=22.73 E-value=1.4e+02 Score=20.30 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=19.0
Q ss_pred cccEEEEEechh-h-HHHHHHhcccc
Q 032952 11 ASALIAMIADED-T-VVGFLLAGVGN 34 (130)
Q Consensus 11 ~~~kIaVIGD~d-t-v~GFrLaGi~~ 34 (130)
....+.+|||.. . +.+++-+|+..
T Consensus 171 ~~~~~~~vGD~~~~Di~~a~~aG~~~ 196 (234)
T 3u26_A 171 KGEEAVYVGDNPVKDCGGSKNLGMTS 196 (234)
T ss_dssp CGGGEEEEESCTTTTHHHHHTTTCEE
T ss_pred CchhEEEEcCCcHHHHHHHHHcCCEE
Confidence 346789999974 5 99999999744
No 79
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Probab=22.30 E-value=1.6e+02 Score=22.27 Aligned_cols=56 Identities=13% Similarity=0.180 Sum_probs=34.2
Q ss_pred HHHHHhcCCCeeEEEEehhh---HHHHHHHHhhcCCCccEEEEcCCCCCCCChhhHHHHHHHHh
Q 032952 58 AFKEFTSREDIAIVLISQYV---ANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKN 118 (130)
Q Consensus 58 ~~~~l~~~~digIIlIte~~---a~~i~~~i~~~~~~~P~Iv~IPs~~g~~~~~~d~I~~~Vk~ 118 (130)
.++++++++++-+++|...- ++.+...++ ..+++++|=|--... .+-..|.+..++
T Consensus 56 ~~~ell~~~~vD~V~i~tp~~~H~~~~~~al~---aGkhVl~EKPla~~~--~ea~~l~~~a~~ 114 (294)
T 1lc0_A 56 SLEDALRSQEIDVAYICSESSSHEDYIRQFLQ---AGKHVLVEYPMTLSF--AAAQELWELAAQ 114 (294)
T ss_dssp CHHHHHHCSSEEEEEECSCGGGHHHHHHHHHH---TTCEEEEESCSCSCH--HHHHHHHHHHHH
T ss_pred CHHHHhcCCCCCEEEEeCCcHhHHHHHHHHHH---CCCcEEEeCCCCCCH--HHHHHHHHHHHH
Confidence 35667778889888887543 344444444 667999998764422 223445555554
No 80
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}
Probab=22.17 E-value=1.7e+02 Score=22.43 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=41.4
Q ss_pred EEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHHhhcCCCccEEEEcCCCCC
Q 032952 44 LIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDH 103 (130)
Q Consensus 44 ~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~~~~~P~Iv~IPs~~g 103 (130)
-...++.+.+++++..++.. +..++-+.+........++.+....-..=+++-.|.-..
T Consensus 34 TlL~p~~t~~~i~~lc~eA~-~~~~~aVcV~p~~v~~a~~~L~~s~v~v~tVigFP~G~~ 92 (239)
T 3ngj_A 34 TLLKADATEEQIRKLCSEAA-EYKFASVCVNPTWVPLCAELLKGTGVKVCTVIGFPLGAT 92 (239)
T ss_dssp EECCTTCCHHHHHHHHHHHH-HHTCSEEEECGGGHHHHHHHHTTSSCEEEEEESTTTCCS
T ss_pred ccCCCCCCHHHHHHHHHHHH-hcCCcEEEECHHHHHHHHHHhCCCCCeEEEEeccCCCCC
Confidence 34577788999999998886 467888888998888888888642222225556664443
No 81
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=21.89 E-value=62 Score=24.95 Aligned_cols=38 Identities=3% Similarity=0.160 Sum_probs=26.9
Q ss_pred CCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHHh
Q 032952 48 SKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVD 86 (130)
Q Consensus 48 ~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~i~ 86 (130)
.+.+..++.+..+ +++..++..||.......++-+.|.
T Consensus 219 ~eps~~~l~~l~~-~ik~~~v~~If~e~~~~~~~~~~ia 256 (291)
T 1pq4_A 219 QEPSAQELKQLID-TAKENNLTMVFGETQFSTKSSEAIA 256 (291)
T ss_dssp BCCCHHHHHHHHH-HHHTTTCCEEEEETTSCCHHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHHcCCCEEEEeCCCChHHHHHHH
Confidence 4557788887666 5568899999998776555555553
No 82
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Probab=21.86 E-value=81 Score=23.38 Aligned_cols=43 Identities=14% Similarity=0.240 Sum_probs=30.0
Q ss_pred cEEEEEech--hhH------HHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhc
Q 032952 13 ALIAMIADE--DTV------VGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTS 64 (130)
Q Consensus 13 ~kIaVIGD~--dtv------~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~ 64 (130)
++.+|||++ .+. ..|+..|++.. |... +.+++++.++++.+-.
T Consensus 2 ~~~~~~G~pi~hs~sp~~h~~~~~~~g~~~~-------y~~~--~~~~~~l~~~i~~l~~ 52 (263)
T 2d5c_A 2 LRFAVLGHPVAHSLSPAMHAFALESLGLEGS-------YEAW--DTPLEALPGRLKEVRR 52 (263)
T ss_dssp EEEEEEESSCTTCSHHHHHHHHHHHTTCCEE-------EEEE--ECCGGGHHHHHHHHHH
T ss_pred eEEEEECCCcccccCHHHHHHHHHHcCCCCE-------EEEE--eCCHHHHHHHHHhccc
Confidence 467999996 443 38999999775 5543 2345788888887753
No 83
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=21.75 E-value=1.3e+02 Score=19.51 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHHhhcCCCccEEEEcCCC
Q 032952 53 KQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSK 101 (130)
Q Consensus 53 eei~~~~~~l~~~~digIIlIte~~a~~i~~~i~~~~~~~P~Iv~IPs~ 101 (130)
+++.+.+++. +-|..+|-+...-.+.+++.++.+....=-+..+|+.
T Consensus 55 ~~l~~~~~~~--~id~viia~~~~~~~~~~~i~~~l~~~gv~v~~vP~~ 101 (141)
T 3nkl_A 55 KYLERLIKKH--CISTVLLAVPSASQVQKKVIIESLAKLHVEVLTIPNL 101 (141)
T ss_dssp GGHHHHHHHH--TCCEEEECCTTSCHHHHHHHHHHHHTTTCEEEECCCH
T ss_pred HHHHHHHHHC--CCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEEECCCH
Confidence 4455544432 2234444443333455566666554333346778874
No 84
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=21.47 E-value=2.6e+02 Score=20.84 Aligned_cols=88 Identities=16% Similarity=0.183 Sum_probs=43.8
Q ss_pred hcccccEEEEEec--hhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHH
Q 032952 8 RTAASALIAMIAD--EDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLV 85 (130)
Q Consensus 8 ~~~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~i 85 (130)
..+..+.|+++=. .+....-.+.|++..-....-...+.+.+.+.+.-.+.++.++.+.==|||+......+..-+.+
T Consensus 64 ~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l 143 (344)
T 3kjx_A 64 ASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHSEAARAML 143 (344)
T ss_dssp TTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHH
T ss_pred hcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHH
Confidence 3445578998853 22222333445543211111112333333345666677888876554577777544333222223
Q ss_pred hhcCCCccEEEE
Q 032952 86 DSHNKPIPAILE 97 (130)
Q Consensus 86 ~~~~~~~P~Iv~ 97 (130)
.+ ...|+|+.
T Consensus 144 ~~--~~iPvV~i 153 (344)
T 3kjx_A 144 DA--AGIPVVEI 153 (344)
T ss_dssp HH--CSSCEEEE
T ss_pred Hh--CCCCEEEE
Confidence 33 67897764
No 85
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=21.37 E-value=2.3e+02 Score=20.32 Aligned_cols=87 Identities=7% Similarity=0.220 Sum_probs=38.1
Q ss_pred hhcccccEEEEEec--hhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhH-HHHHH
Q 032952 7 IRTAASALIAMIAD--EDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVA-NRIRF 83 (130)
Q Consensus 7 ~~~~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a-~~i~~ 83 (130)
++++...+|+++-. .+....-.+.|++..-....-...+.+.+.+.+...+.++.+..+.==|||+...... +.++
T Consensus 3 L~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~- 81 (285)
T 3c3k_A 3 LRTAKTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDALSELPELQ- 81 (285)
T ss_dssp ----CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCGGGHHHHH-
T ss_pred CcCCCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHH-
Confidence 34456678999864 2222222233332210000001223333334455566777777544346776654332 2232
Q ss_pred HHhhcCCCccEEEE
Q 032952 84 LVDSHNKPIPAILE 97 (130)
Q Consensus 84 ~i~~~~~~~P~Iv~ 97 (130)
.+. ...|+|+.
T Consensus 82 ~l~---~~iPvV~~ 92 (285)
T 3c3k_A 82 NII---GAFPWVQC 92 (285)
T ss_dssp HHH---TTSSEEEE
T ss_pred HHh---cCCCEEEE
Confidence 232 45787764
No 86
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Probab=21.21 E-value=82 Score=23.83 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=37.3
Q ss_pred cEEEEEech--hh------HHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEe
Q 032952 13 ALIAMIADE--DT------VVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLIS 74 (130)
Q Consensus 13 ~kIaVIGD~--dt------v~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIt 74 (130)
++.+|||++ .+ -..|+..|++.. |...+ .+++++.++++.+- ..++.=+.||
T Consensus 12 ~~~~viG~pi~hS~Sp~~h~~~~~~~gi~~~-------y~~~~--~~~~~l~~~i~~l~-~~~~~G~nVt 71 (287)
T 1nvt_A 12 KVIGLIGHPVEHSFSPIMHNAAFKDKGLNYV-------YVAFD--VLPENLKYVIDGAK-ALGIVGFNVT 71 (287)
T ss_dssp EEEEEEESSCTTCSHHHHHHHHHHHTTCCEE-------EEEEE--CCGGGGGGHHHHHH-HHTCCEEEEC
T ss_pred cEEEEECCCcccccCHHHHHHHHHHcCCCcE-------EEEEE--cCHHHHHHHHHHHH-hCCCCEEEEc
Confidence 578999996 44 468999999776 66553 34588888888775 3466666667
No 87
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=21.21 E-value=2.4e+02 Score=20.41 Aligned_cols=86 Identities=13% Similarity=0.143 Sum_probs=40.3
Q ss_pred ccccEEEEEec-------hhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHH
Q 032952 10 AASALIAMIAD-------EDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIR 82 (130)
Q Consensus 10 ~~~~kIaVIGD-------~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~ 82 (130)
+..+.||||-. .+....=.+.|++..-....-+..+.+.+.+.+.-.+.++.+..+.==|||+......+..-
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~ 84 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKENDPIK 84 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTTCHHH
T ss_pred CCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccChHHH
Confidence 45578999862 12222333455543311111122333333333444556666665444477776543322222
Q ss_pred HHHhhcCCCccEEEE
Q 032952 83 FLVDSHNKPIPAILE 97 (130)
Q Consensus 83 ~~i~~~~~~~P~Iv~ 97 (130)
+.+.+ ...|+|+.
T Consensus 85 ~~l~~--~~iPvV~i 97 (295)
T 3hcw_A 85 QMLID--ESMPFIVI 97 (295)
T ss_dssp HHHHH--TTCCEEEE
T ss_pred HHHHh--CCCCEEEE
Confidence 22332 56897763
No 88
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}
Probab=21.17 E-value=1.7e+02 Score=19.93 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=18.0
Q ss_pred EEEEEec-hhhHHHHHHhccccc
Q 032952 14 LIAMIAD-EDTVVGFLLAGVGNV 35 (130)
Q Consensus 14 kIaVIGD-~dtv~GFrLaGi~~~ 35 (130)
.+.+||| ..-+.+++.+|+..+
T Consensus 179 ~~v~vGD~~~Di~~a~~aG~~~v 201 (231)
T 3kzx_A 179 EVFFIGDSISDIQSAIEAGCLPI 201 (231)
T ss_dssp TEEEEESSHHHHHHHHHTTCEEE
T ss_pred CEEEEcCCHHHHHHHHHCCCeEE
Confidence 6899999 556789999998664
No 89
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=21.15 E-value=1.6e+02 Score=18.42 Aligned_cols=66 Identities=12% Similarity=0.169 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhc--CCCeeEEEEehhhHHHHHHHHhhcC-CCccEEEEcCCCCC----CCChhhHHHHHHHHhhcc
Q 032952 53 KQIEDAFKEFTS--REDIAIVLISQYVANRIRFLVDSHN-KPIPAILEIPSKDH----PYDPAQDSVLSRVKNLVS 121 (130)
Q Consensus 53 eei~~~~~~l~~--~~digIIlIte~~a~~i~~~i~~~~-~~~P~Iv~IPs~~g----~~~~~~d~I~~~Vk~aiG 121 (130)
..+...|.++.+ .+++.++.++-.-.. +...+|. ...|.++.+++..- ......+.+.+.+++++|
T Consensus 47 ~~~~~~l~~~~~~~~~~v~~~~vd~d~~~---~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~ 119 (119)
T 1w4v_A 47 KILGPRLEKMVAKQHGKVVMAKVDIDDHT---DLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG 119 (119)
T ss_dssp HHHHHHHHHHHHHTTTSSEEEEEETTTTH---HHHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCCCCH---HHHHHcCCCcccEEEEEeCCcEEEEEcCCCCHHHHHHHHHHHhC
Confidence 344455555543 245777777643222 2334454 78999888743220 011135679999988876
No 90
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=21.11 E-value=1.4e+02 Score=22.72 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=35.3
Q ss_pred HHHHhcCCCeeEEEEehhhHHHHHHHHhhcCCCccEEEEcCCCCCCCChhhHHHHHHHHh
Q 032952 59 FKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKN 118 (130)
Q Consensus 59 ~~~l~~~~digIIlIte~~a~~i~~~i~~~~~~~P~Iv~IPs~~g~~~~~~d~I~~~Vk~ 118 (130)
+++|++++++-+++|+..-.....-.+..++..+++++|=|--... .+-+.|.+..++
T Consensus 78 ~~ell~~~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~--~ea~~l~~~a~~ 135 (350)
T 4had_A 78 YEEMLASDVIDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKA--GDIDAVIAARDR 135 (350)
T ss_dssp HHHHHHCSSCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSG--GGGHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccch--hhHHHHHHHHHH
Confidence 5677888888888887654333333333334678899988865433 223456555554
No 91
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=21.11 E-value=2.3e+02 Score=20.17 Aligned_cols=84 Identities=20% Similarity=0.229 Sum_probs=43.6
Q ss_pred ccccEEEEEec--hhhHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHHhh
Q 032952 10 AASALIAMIAD--EDTVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDS 87 (130)
Q Consensus 10 ~~~~kIaVIGD--~dtv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~i~~ 87 (130)
+..+.||++-. .+....-.+.|++..-....-+..+.+.+.+.+.-.+.++.+..+.==|||+..... + +.++.
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~---~~~~~ 80 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN-P---QTVQE 80 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC-H---HHHHH
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc-H---HHHHH
Confidence 45578888864 233333344455332111111233333333445566778877765545777776555 3 23333
Q ss_pred c-CCCccEEEE
Q 032952 88 H-NKPIPAILE 97 (130)
Q Consensus 88 ~-~~~~P~Iv~ 97 (130)
+ +...|+|+.
T Consensus 81 l~~~~iPvV~i 91 (276)
T 3jy6_A 81 ILHQQMPVVSV 91 (276)
T ss_dssp HHTTSSCEEEE
T ss_pred HHHCCCCEEEE
Confidence 3 267897764
No 92
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=21.01 E-value=29 Score=21.42 Aligned_cols=17 Identities=12% Similarity=0.272 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCCee
Q 032952 53 KQIEDAFKEFTSREDIA 69 (130)
Q Consensus 53 eei~~~~~~l~~~~dig 69 (130)
+|++++|.+|+++.+|.
T Consensus 3 eEae~aF~~lL~~~~V~ 19 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVD 19 (59)
T ss_dssp THHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHcCCC
Confidence 78999999999877653
No 93
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=20.88 E-value=2e+02 Score=20.42 Aligned_cols=80 Identities=6% Similarity=-0.192 Sum_probs=41.8
Q ss_pred ccccEEEEEechhhHHHHHHhccccccc-CCccee-EEecCCCcHHHHHHHHHHHhcC-CCe-eEEEEehhhHHHHHHHH
Q 032952 10 AASALIAMIADEDTVVGFLLAGVGNVDL-RRKTNY-LIVDSKTTIKQIEDAFKEFTSR-EDI-AIVLISQYVANRIRFLV 85 (130)
Q Consensus 10 ~~~~kIaVIGD~dtv~GFrLaGi~~~~~-~~~~nf-~v~~~~~~~eei~~~~~~l~~~-~di-gIIlIte~~a~~i~~~i 85 (130)
...++|++++......--|+.|+...=. ++-+.- .....+.+.++..+++++++.+ +++ ||+..++.++--+-..+
T Consensus 116 ~G~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al 195 (280)
T 3gyb_A 116 LGHTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSSNDITAIGALGAA 195 (280)
T ss_dssp TTCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCcccccCCCCHHHHHHHHHHHHhCCCCCCEEEECChHHHHHHHHHH
Confidence 4567899999854323334444321100 000000 0122334567888888888864 454 55555666666565666
Q ss_pred hhcC
Q 032952 86 DSHN 89 (130)
Q Consensus 86 ~~~~ 89 (130)
.+..
T Consensus 196 ~~~g 199 (280)
T 3gyb_A 196 RELG 199 (280)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 6654
No 94
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=20.73 E-value=1.9e+02 Score=22.42 Aligned_cols=58 Identities=9% Similarity=0.147 Sum_probs=34.7
Q ss_pred HHHHhcCCCeeEEEEehhhHHHHHHHHhhcCCCccEEEEcCCCCCCCChhhHHHHHHHHh
Q 032952 59 FKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKN 118 (130)
Q Consensus 59 ~~~l~~~~digIIlIte~~a~~i~~~i~~~~~~~P~Iv~IPs~~g~~~~~~d~I~~~Vk~ 118 (130)
++++++++++-+++|+-.-.....-.+..++..+++++|=|--... .+-..|.+..++
T Consensus 80 ~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~--~ea~~l~~~a~~ 137 (361)
T 3u3x_A 80 AEEILEDENIGLIVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSF--DQLAKLRRVQAE 137 (361)
T ss_dssp HHHHHTCTTCCEEEECCCHHHHHHHHHHHHHTTCEEEEESCSCSSH--HHHHHHHHHHHT
T ss_pred HHHHhcCCCCCEEEEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCH--HHHHHHHHHHHH
Confidence 4677878888888887654433333333344678999999864422 223445555544
No 95
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=20.72 E-value=1.4e+02 Score=23.51 Aligned_cols=58 Identities=9% Similarity=0.091 Sum_probs=35.6
Q ss_pred HHHHhcCCCeeEEEEehhhHHHHHHHHhhcCCCccEEEEcCCCCCCCChhhHHHHHHHHh
Q 032952 59 FKEFTSREDIAIVLISQYVANRIRFLVDSHNKPIPAILEIPSKDHPYDPAQDSVLSRVKN 118 (130)
Q Consensus 59 ~~~l~~~~digIIlIte~~a~~i~~~i~~~~~~~P~Iv~IPs~~g~~~~~~d~I~~~Vk~ 118 (130)
+++|++++++-+++|+..-.....-.+..++..+++++|=|--... .+-..|.+..++
T Consensus 88 ~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~--~ea~~l~~~a~~ 145 (412)
T 4gqa_A 88 WRELVNDPQVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNE--QQAQEMAQAARR 145 (412)
T ss_dssp HHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSSH--HHHHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEECCCcHHHHHHHHHHHHcCCCeEeecCCcCCH--HHHHHHHHHHHH
Confidence 5678888888888887654433333333344678999999875532 223445555544
No 96
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=20.44 E-value=2.4e+02 Score=20.12 Aligned_cols=83 Identities=18% Similarity=0.115 Sum_probs=43.8
Q ss_pred ccccEEEEEechh--hHHHHHHhccccccc-CC---cceeEEecCCCcHHHHHHHHHHHhcCC-Ce-eEEEEehhhHHHH
Q 032952 10 AASALIAMIADED--TVVGFLLAGVGNVDL-RR---KTNYLIVDSKTTIKQIEDAFKEFTSRE-DI-AIVLISQYVANRI 81 (130)
Q Consensus 10 ~~~~kIaVIGD~d--tv~GFrLaGi~~~~~-~~---~~nf~v~~~~~~~eei~~~~~~l~~~~-di-gIIlIte~~a~~i 81 (130)
...++|++++... ...--|+.|+...=. ++ ...++. ..+.+.++..+++.+++.+. ++ ||+..++.++--+
T Consensus 125 ~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~ 203 (289)
T 3g85_A 125 KRYKSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHII-AAENSIHGGVDAAKKLMKLKNTPKALFCNSDSIALGV 203 (289)
T ss_dssp TTCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEE-ECCSSHHHHHHHHHHHTTSSSCCSEEEESSHHHHHHH
T ss_pred cCCCEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhee-ccCCCHHHHHHHHHHHHcCCCCCcEEEEcCCHHHHHH
Confidence 4567899997632 222224444322100 00 011222 22345688888999998643 44 5555666666666
Q ss_pred HHHHhhcCCCcc
Q 032952 82 RFLVDSHNKPIP 93 (130)
Q Consensus 82 ~~~i~~~~~~~P 93 (130)
-..+.+.....|
T Consensus 204 ~~al~~~g~~vP 215 (289)
T 3g85_A 204 ISVLNKRQISIP 215 (289)
T ss_dssp HHHHHHTTCCTT
T ss_pred HHHHHHcCCCCC
Confidence 666666543333
No 97
>1w2f_A Inositol-trisphosphate 3-kinase A; inositol phosphate kinase, transferase, calmodulin-binding; 1.8A {Homo sapiens} SCOP: d.143.1.3 PDB: 1tzd_A* 1w2d_A* 1w2c_A*
Probab=20.15 E-value=66 Score=25.29 Aligned_cols=40 Identities=25% Similarity=0.491 Sum_probs=26.2
Q ss_pred hHHHHHHhcccccccCCcceeEEecCCCcHHHHHHHHHHHhcC
Q 032952 23 TVVGFLLAGVGNVDLRRKTNYLIVDSKTTIKQIEDAFKEFTSR 65 (130)
Q Consensus 23 tv~GFrLaGi~~~~~~~~~nf~v~~~~~~~eei~~~~~~l~~~ 65 (130)
.-+|||+.|+..-+....++| ....+.+++.++|..++..
T Consensus 141 ~~lGfRi~G~k~~~~~~~K~~---gr~~s~~~~~~~l~~F~~~ 180 (276)
T 1w2f_A 141 TTLGFRIEGIKKADGSCSTDF---KTTRSREQVLRVFEEFVQG 180 (276)
T ss_dssp HHHSEEEEEEECTTSCEECCC---TTCCSHHHHHHHHHHHHTT
T ss_pred ccCCEEEEEEEccCCcccchh---cccCCHHHHHHHHHHHhcC
Confidence 568999999964321111112 2233579999999999965
No 98
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=20.06 E-value=2.7e+02 Score=20.53 Aligned_cols=87 Identities=11% Similarity=0.068 Sum_probs=39.3
Q ss_pred ccccEEEEEec-hhhHHHHHHhcccccccCC-cceeEEecCCCcHHHHHHHHHHHhcCCCeeEEEEehhhHHHHHHHHhh
Q 032952 10 AASALIAMIAD-EDTVVGFLLAGVGNVDLRR-KTNYLIVDSKTTIKQIEDAFKEFTSREDIAIVLISQYVANRIRFLVDS 87 (130)
Q Consensus 10 ~~~~kIaVIGD-~dtv~GFrLaGi~~~~~~~-~~nf~v~~~~~~~eei~~~~~~l~~~~digIIlIte~~a~~i~~~i~~ 87 (130)
+...+||++-. .+....-.+.|++..-... .-...+.+.+.+.+.-.+.++.++.+.==|||+..... +.+.+.++.
T Consensus 4 ~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~-~~~~~~~~~ 82 (325)
T 2x7x_A 4 TPHFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEA-APMTPIVEE 82 (325)
T ss_dssp --CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSH-HHHHHHHHH
T ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCH-HHHHHHHHH
Confidence 34578988853 2222222334443221111 11123333333445566778888755434666655332 222223333
Q ss_pred c-CCCccEEEE
Q 032952 88 H-NKPIPAILE 97 (130)
Q Consensus 88 ~-~~~~P~Iv~ 97 (130)
+ +...|+|+.
T Consensus 83 ~~~~~iPvV~~ 93 (325)
T 2x7x_A 83 AYQKGIPVILV 93 (325)
T ss_dssp HHHTTCCEEEE
T ss_pred HHHCCCeEEEe
Confidence 3 256897764
Done!