Query 032954
Match_columns 130
No_of_seqs 136 out of 1046
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 07:59:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00068 60S ribosomal protein 100.0 2.9E-51 6.2E-56 319.1 11.1 122 9-130 3-124 (202)
2 CHL00159 rpl13 ribosomal prote 100.0 5.8E-50 1.3E-54 297.9 10.1 118 2-126 7-142 (143)
3 PRK09216 rplM 50S ribosomal pr 100.0 4.6E-50 9.9E-55 298.9 9.5 120 2-128 6-143 (144)
4 TIGR01066 rplM_bact ribosomal 100.0 1.1E-49 2.4E-54 295.6 9.5 116 4-126 6-139 (140)
5 TIGR01077 L13_A_E ribosomal pr 100.0 2.1E-48 4.6E-53 289.4 9.1 118 12-129 1-118 (142)
6 COG0102 RplM Ribosomal protein 100.0 8.3E-48 1.8E-52 286.7 10.8 118 2-126 6-142 (148)
7 PRK06394 rpl13p 50S ribosomal 100.0 2.9E-47 6.3E-52 284.4 9.4 120 10-129 3-123 (146)
8 PF00572 Ribosomal_L13: Riboso 100.0 5.3E-47 1.2E-51 277.7 7.6 109 11-126 1-127 (128)
9 PLN00205 ribisomal protein L13 100.0 6.3E-46 1.4E-50 286.7 10.0 115 5-126 11-143 (191)
10 cd00392 Ribosomal_L13 Ribosoma 100.0 1.1E-42 2.3E-47 250.6 9.0 96 11-113 1-114 (114)
11 KOG3203 Mitochondrial/chloropl 100.0 1.1E-41 2.3E-46 254.7 6.1 118 5-129 17-158 (165)
12 KOG3204 60S ribosomal protein 100.0 2.2E-30 4.9E-35 200.0 6.0 117 7-130 3-119 (197)
13 PF00436 SSB: Single-strand bi 67.8 6 0.00013 26.3 2.7 23 20-42 54-76 (104)
14 PHA02754 hypothetical protein; 62.1 15 0.00032 23.9 3.5 16 34-49 43-58 (67)
15 cd04496 SSB_OBF SSB_OBF: A sub 61.1 9.8 0.00021 24.9 2.7 24 20-43 50-73 (100)
16 COG0629 Ssb Single-stranded DN 60.0 8.9 0.00019 28.7 2.6 23 20-42 57-79 (167)
17 PRK07274 single-stranded DNA-b 58.7 21 0.00045 25.8 4.3 31 8-42 45-75 (131)
18 PRK05853 hypothetical protein; 58.1 11 0.00024 28.7 2.8 23 20-42 49-71 (161)
19 PRK06752 single-stranded DNA-b 57.1 10 0.00022 26.5 2.3 30 9-42 46-75 (112)
20 PRK07772 single-stranded DNA-b 54.4 12 0.00026 29.1 2.5 23 20-42 59-81 (186)
21 PF12953 DUF3842: Domain of un 53.7 18 0.00039 26.8 3.3 15 34-48 53-67 (131)
22 PRK08182 single-stranded DNA-b 53.5 13 0.00028 27.6 2.6 23 20-42 60-82 (148)
23 PF04989 CmcI: Cephalosporin h 52.8 17 0.00036 28.8 3.2 32 8-40 110-145 (206)
24 PRK06863 single-stranded DNA-b 52.0 17 0.00038 27.7 3.1 30 9-42 51-80 (168)
25 PRK08486 single-stranded DNA-b 51.7 13 0.00028 28.7 2.4 23 20-42 55-77 (182)
26 PRK08763 single-stranded DNA-b 51.5 13 0.00029 28.2 2.4 23 20-42 58-80 (164)
27 PRK07275 single-stranded DNA-b 51.3 13 0.00029 28.1 2.3 23 20-42 53-75 (162)
28 PRK13732 single-stranded DNA-b 51.2 13 0.00029 28.6 2.3 29 10-42 54-82 (175)
29 TIGR00621 ssb single stranded 51.1 13 0.00029 27.8 2.3 23 20-42 57-79 (164)
30 PRK09010 single-stranded DNA-b 50.8 19 0.00041 27.8 3.1 30 9-42 53-82 (177)
31 PF03447 NAD_binding_3: Homose 50.6 30 0.00066 23.6 3.9 34 10-45 60-93 (117)
32 PRK07459 single-stranded DNA-b 50.5 16 0.00034 26.2 2.5 23 20-42 50-72 (121)
33 PRK06751 single-stranded DNA-b 48.8 14 0.00031 28.3 2.2 29 9-41 46-74 (173)
34 PRK05733 single-stranded DNA-b 47.1 30 0.00065 26.5 3.7 30 9-42 52-81 (172)
35 PF04379 DUF525: Protein of un 41.5 21 0.00045 24.5 1.9 13 7-19 31-43 (90)
36 PRK06958 single-stranded DNA-b 39.9 28 0.00061 27.0 2.6 29 10-42 52-80 (182)
37 KOG1154 Gamma-glutamyl kinase 38.4 36 0.00077 28.2 3.0 32 17-48 27-61 (285)
38 PRK06293 single-stranded DNA-b 34.0 39 0.00085 25.7 2.5 29 10-42 43-71 (161)
39 PRK03759 isopentenyl-diphospha 31.6 94 0.002 23.2 4.3 40 8-48 5-50 (184)
40 PRK06642 single-stranded DNA-b 31.4 41 0.00089 25.0 2.2 23 20-42 59-82 (152)
41 PF14419 SPOUT_MTase_2: AF2226 31.2 91 0.002 24.1 4.1 37 9-45 94-130 (173)
42 PRK05461 apaG CO2+/MG2+ efflux 29.8 40 0.00087 24.6 1.9 14 6-19 47-60 (127)
43 PRK15393 NUDIX hydrolase YfcD; 29.8 1.3E+02 0.0028 22.5 4.7 39 6-44 7-48 (180)
44 PTZ00302 N-acetylglucosamine-p 29.4 89 0.0019 28.4 4.4 35 10-44 246-281 (585)
45 COG2967 ApaG Uncharacterized p 28.2 41 0.0009 24.7 1.7 15 6-20 46-60 (126)
46 PF03446 NAD_binding_2: NAD bi 27.5 79 0.0017 23.0 3.2 24 21-44 9-33 (163)
47 PRK02801 primosomal replicatio 27.1 57 0.0012 22.5 2.2 29 12-42 48-76 (101)
48 PF02879 PGM_PMM_II: Phosphogl 26.9 1.5E+02 0.0033 19.6 4.3 32 11-44 23-54 (104)
49 COG4091 Predicted homoserine d 26.7 1E+02 0.0022 27.0 4.0 41 12-54 104-145 (438)
50 PF12396 DUF3659: Protein of u 26.1 35 0.00075 22.1 0.9 31 3-33 5-35 (64)
51 PF02254 TrkA_N: TrkA-N domain 25.8 72 0.0016 21.3 2.5 27 21-47 6-33 (116)
52 COG0458 CarB Carbamoylphosphat 25.7 86 0.0019 27.3 3.5 36 24-59 17-54 (400)
53 COG0569 TrkA K+ transport syst 24.9 73 0.0016 24.9 2.7 22 21-42 8-30 (225)
54 COG5493 Uncharacterized conser 24.7 44 0.00096 26.8 1.4 20 6-25 132-151 (231)
55 KOG0023 Alcohol dehydrogenase, 24.4 1.2E+02 0.0025 26.2 3.9 34 8-44 181-214 (360)
56 PF06088 TLP-20: Nucleopolyhed 24.1 51 0.0011 25.4 1.6 12 34-45 67-78 (169)
57 cd02430 PTH2 Peptidyl-tRNA hyd 24.0 2.2E+02 0.0049 20.2 4.9 24 9-32 2-26 (115)
58 TIGR02150 IPP_isom_1 isopenten 23.8 54 0.0012 23.9 1.7 36 12-48 2-43 (158)
59 cd00170 SEC14 Sec14p-like lipi 23.0 1.7E+02 0.0037 19.7 4.1 55 36-95 63-125 (157)
60 PRK06719 precorrin-2 dehydroge 22.9 1E+02 0.0023 22.7 3.1 31 12-42 7-43 (157)
61 PF07552 Coat_X: Spore Coat Pr 22.9 62 0.0013 20.8 1.6 18 34-51 19-36 (60)
62 KOG1481 Cysteine synthase [Ami 22.4 65 0.0014 27.5 2.1 49 12-64 318-373 (391)
63 cd02885 IPP_Isomerase Isopente 22.3 3.1E+02 0.0067 19.8 5.9 34 9-44 2-41 (165)
64 PRK09880 L-idonate 5-dehydroge 21.7 1.5E+02 0.0033 23.8 4.1 31 8-41 169-200 (343)
65 PF04472 DUF552: Protein of un 21.6 1E+02 0.0022 19.7 2.5 23 25-48 12-34 (73)
66 PRK06718 precorrin-2 dehydroge 21.4 1.1E+02 0.0023 23.6 3.0 22 22-43 19-41 (202)
67 cd03016 PRX_1cys Peroxiredoxin 21.2 1.1E+02 0.0023 23.3 2.9 35 8-42 117-177 (203)
68 PF02721 DUF223: Domain of unk 21.1 2.2E+02 0.0049 18.8 4.3 41 12-52 3-54 (95)
69 PF08980 DUF1883: Domain of un 21.0 26 0.00056 24.6 -0.5 17 32-48 11-27 (94)
70 PF08859 DGC: DGC domain; Int 21.0 1.9E+02 0.0041 20.2 4.0 21 13-33 3-24 (110)
71 cd08232 idonate-5-DH L-idonate 20.7 1.6E+02 0.0035 23.2 4.0 32 8-42 165-197 (339)
72 PF03621 MbtH: MbtH-like prote 20.7 73 0.0016 19.9 1.6 12 34-45 10-21 (54)
73 TIGR00292 thiazole biosynthesi 20.6 86 0.0019 24.9 2.4 24 9-33 158-181 (254)
74 COG0425 SirA Predicted redox p 20.5 1.8E+02 0.004 19.1 3.6 36 11-47 5-44 (78)
75 cd01075 NAD_bind_Leu_Phe_Val_D 20.5 1.2E+02 0.0027 23.1 3.2 24 21-44 36-60 (200)
76 cd00235 TLP-20 Telokin-like pr 20.3 69 0.0015 23.0 1.6 11 34-44 67-77 (108)
77 PRK12829 short chain dehydroge 20.1 1.9E+02 0.0041 21.7 4.1 30 9-42 12-42 (264)
No 1
>PTZ00068 60S ribosomal protein L13a; Provisional
Probab=100.00 E-value=2.9e-51 Score=319.13 Aligned_cols=122 Identities=70% Similarity=1.180 Sum_probs=119.2
Q ss_pred eeEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEeccceeecCccchhhhheeeeecccccCCCCCCCccccCchHhHHHH
Q 032954 9 AKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRT 88 (130)
Q Consensus 9 r~w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViNaeki~~tG~k~~~k~~y~~~l~~~~~~~pg~~~~~~r~P~~i~~~a 88 (130)
.+|+||||+||+||||||.||+.|+|||+|||||||+|+|||+++++|.||+++++++++.+|..|++++++|++||++|
T Consensus 3 ~~w~vIDA~g~vLGRLAS~VAk~Ll~Gd~VVVVNaeki~iTG~k~~~K~~y~~~lk~~~~~nP~~g~~~~r~P~~Il~ra 82 (202)
T PTZ00068 3 KKVIVIDCKGHLLGRLASVVAKELLLGQKIVVVRCEDLNISGSLFRNKVKYEEFLRKRMNTNPRRGPFHHRAPSDIFWRT 82 (202)
T ss_pred CceEEEECCCCcHHHHHHHHHHHHhCCCEEEEEecceeEeecchhhheeeeEeeeEeeccCCCCcchhcccCHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCChhHHHHhccceeecCCCCCccccCccccCcCcC
Q 032954 89 VRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALK 130 (130)
Q Consensus 89 VrgMLPkkn~~gr~~l~rLkvy~g~~~p~~~q~~~~~p~a~~ 130 (130)
|+||||+||.+|+.+|+||+||+|+||||++++++++|+|++
T Consensus 83 VrGMLPkk~~~Gr~alkrLkVy~G~php~~~~k~~vvp~A~r 124 (202)
T PTZ00068 83 VRGMLPHKTKRGAAALKRLKVFEGVPAPYDKVKRVVIPSALR 124 (202)
T ss_pred HhhhCCCCChhHHHHHhCCEEecCCCCchhccCcccccchhh
Confidence 999999989999999999999999999999999999999973
No 2
>CHL00159 rpl13 ribosomal protein L13; Validated
Probab=100.00 E-value=5.8e-50 Score=297.93 Aligned_cols=118 Identities=29% Similarity=0.434 Sum_probs=111.8
Q ss_pred CCCCceeeeEEEEeCCCCchhhHHHHHHHHHh------------CCCEEEEEeccceeecCccchhhhheeeeecccccC
Q 032954 2 VSGSGICAKRVVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNT 69 (130)
Q Consensus 2 ~~~~~~~r~w~viDA~~~~lGRLAs~VAk~L~------------~Gd~VvViNaeki~~tG~k~~~k~~y~~~l~~~~~~ 69 (130)
.++.++.|+|+||||+||+||||||.||++|+ |||+|||||||+|+|||+||.+|.||+ |||
T Consensus 7 ~~~~~~~r~W~viDA~~~~lGRlAs~iA~~L~GKhKp~ytP~~d~Gd~VVViNa~kv~~TG~K~~~K~y~~------htg 80 (143)
T CHL00159 7 PSKDYKNRKWYIIDAKDQTLGRLATKIASLLRGKNKPSYHPSVDTGDYVIVINAEKIKVTGNKTSQKFYVR------HSG 80 (143)
T ss_pred CCchhcCCCEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCCcCCCCEEEEEecceeEEeCchhhheEEEe------cCC
Confidence 46778899999999999999999999999998 999999999999999999999998775 899
Q ss_pred CCCC------CCccccCchHhHHHHHHccCCCCChhHHHHhccceeecCCCCCccccCccccC
Q 032954 70 KPSH------GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIP 126 (130)
Q Consensus 70 ~pg~------~~~~~r~P~~i~~~aVrgMLPkkn~~gr~~l~rLkvy~g~~~p~~~q~~~~~p 126 (130)
|||+ +++++++|++||++||+||||+ |++|+.+|+||+||+|++|||++|+|..+.
T Consensus 81 ~pGg~k~~~~~~~~~r~P~~il~~aV~gMLPk-n~lgr~~~~rLkvy~G~~hph~aq~p~~~~ 142 (143)
T CHL00159 81 RPGGLKIETFEELQNRLPNRIIEKAVKGMLPK-GPLGRKLFTKLKVYKGESHPHVAQKPIKIN 142 (143)
T ss_pred CCCCcccccHHHHhhcCHHHHHHHHHHhcCCC-ChhHHHHHhCCEEeCCCCCCccccCCeecC
Confidence 9986 6899999999999999999996 999999999999999999999999998875
No 3
>PRK09216 rplM 50S ribosomal protein L13; Reviewed
Probab=100.00 E-value=4.6e-50 Score=298.88 Aligned_cols=120 Identities=28% Similarity=0.459 Sum_probs=113.8
Q ss_pred CCCCceeeeEEEEeCCCCchhhHHHHHHHHHh------------CCCEEEEEeccceeecCccchhhhheeeeecccccC
Q 032954 2 VSGSGICAKRVVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNT 69 (130)
Q Consensus 2 ~~~~~~~r~w~viDA~~~~lGRLAs~VAk~L~------------~Gd~VvViNaeki~~tG~k~~~k~~y~~~l~~~~~~ 69 (130)
.+..+++++|+||||+||+||||||.||++|+ |||+|||||||+|+|||++|++|.||+ |||
T Consensus 6 ~~~~~~~~~W~viDA~~~~lGRlAs~IAk~L~GKhKp~y~p~~d~Gd~VvViNa~ki~~tG~k~~~k~y~~------htg 79 (144)
T PRK09216 6 AKPAEVERKWYVIDAEGKVLGRLASEVASILRGKHKPTFTPHVDTGDFVIVINAEKVKLTGKKLTDKIYYR------HSG 79 (144)
T ss_pred CChhhcCCCEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCCCCCCCEEEEEeCceeEEcCchHhheeeEE------ecc
Confidence 46678899999999999999999999999999 999999999999999999999999997 899
Q ss_pred CCCC------CCccccCchHhHHHHHHccCCCCChhHHHHhccceeecCCCCCccccCccccCcC
Q 032954 70 KPSH------GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDA 128 (130)
Q Consensus 70 ~pg~------~~~~~r~P~~i~~~aVrgMLPkkn~~gr~~l~rLkvy~g~~~p~~~q~~~~~p~a 128 (130)
|||+ +++++++|++||++||+||||+ |++|+.+|+||+||+|++|||++|+|..++-+
T Consensus 80 ~pGglk~~~~~~~~~r~P~~il~~aVrgMLPk-n~lgr~~~~rLkvy~G~~hp~~~q~p~~~~~~ 143 (144)
T PRK09216 80 YPGGLKEITFGELLAKKPERVIEKAVKGMLPK-NPLGRAMFKKLKVYAGAEHPHAAQQPEVLEIK 143 (144)
T ss_pred cCCCCEEecHHHHhhhCHHHHHHHHHHhcCCC-CccHHHHHhCcEEeCCCCCCccccCCEecccC
Confidence 9986 8899999999999999999997 99999999999999999999999999887643
No 4
>TIGR01066 rplM_bact ribosomal protein L13, bacterial type. This model distinguishes ribosomal protein L13 of bacteria and organelles from its eukarytotic and archaeal counterparts.
Probab=100.00 E-value=1.1e-49 Score=295.64 Aligned_cols=116 Identities=31% Similarity=0.483 Sum_probs=111.1
Q ss_pred CCceeeeEEEEeCCCCchhhHHHHHHHHHh------------CCCEEEEEeccceeecCccchhhhheeeeecccccCCC
Q 032954 4 GSGICAKRVVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKP 71 (130)
Q Consensus 4 ~~~~~r~w~viDA~~~~lGRLAs~VAk~L~------------~Gd~VvViNaeki~~tG~k~~~k~~y~~~l~~~~~~~p 71 (130)
..+++|+|+||||+||+||||||.||++|+ |||+|||||||+|++||++|++|.||+ |||||
T Consensus 6 ~~~~~r~W~viDA~~~~lGRLAs~iAk~L~GKhKp~y~p~~d~Gd~VvViNa~ki~~tG~k~~~k~y~~------htg~p 79 (140)
T TIGR01066 6 SDDKKRKWYVVDAAGKTLGRLASEVARLLRGKHKPTYTPHVDCGDYVIVINAEKVRLTGKKLEQKVYYR------HSGYP 79 (140)
T ss_pred hhhhcccEEEEeCCCCchHHHHHHHHHHHhccCCCccCCCccCCCEEEEEeccEEEEeCchhhceeeEE------EcccC
Confidence 568899999999999999999999999999 999999999999999999999999997 89999
Q ss_pred CC------CCccccCchHhHHHHHHccCCCCChhHHHHhccceeecCCCCCccccCccccC
Q 032954 72 SH------GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIP 126 (130)
Q Consensus 72 g~------~~~~~r~P~~i~~~aVrgMLPkkn~~gr~~l~rLkvy~g~~~p~~~q~~~~~p 126 (130)
|+ +++++++|++||++||+||||+ |.+|+.+|+||+||+|+||||++|+|..+.
T Consensus 80 gg~k~~~~~~~~~r~P~~ii~~aVrGMLPk-n~lgr~~l~rLkvy~G~~hp~~~q~p~~~~ 139 (140)
T TIGR01066 80 GGLKSRTFEEMIARKPERVLEHAVKGMLPK-NRLGRKLFKKLKVYAGSEHPHEAQKPIVLD 139 (140)
T ss_pred CccccccHHHhhhcCHHHHHHHHHHhcCCC-CccHHHHHhCeEEeCCCCCChhhcCCeecC
Confidence 86 8899999999999999999996 999999999999999999999999998764
No 5
>TIGR01077 L13_A_E ribosomal protein L13, archaeal/eukaryotic. This model represents ribosomal protein of L13 from the Archaea and from the eukaryotic cytosol. Bacterial and organellar forms are represented by TIGR01066.
Probab=100.00 E-value=2.1e-48 Score=289.39 Aligned_cols=118 Identities=60% Similarity=0.973 Sum_probs=111.5
Q ss_pred EEEeCCCCchhhHHHHHHHHHhCCCEEEEEeccceeecCccchhhhheeeeecccccCCCCCCCccccCchHhHHHHHHc
Q 032954 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRG 91 (130)
Q Consensus 12 ~viDA~~~~lGRLAs~VAk~L~~Gd~VvViNaeki~~tG~k~~~k~~y~~~l~~~~~~~pg~~~~~~r~P~~i~~~aVrg 91 (130)
+||||+||+||||||.||+.|+|||+|||||||+|.+||++++++.||+|+.+.++..+|..+++++++|++||++||+|
T Consensus 1 ivIDA~~~vlGRLAs~IA~~L~~Gd~VvViNaeki~~TG~k~~~k~~y~~~~~~g~~~~~~~~~~~~r~P~~il~~aVrG 80 (142)
T TIGR01077 1 TVIDGSGHILGRLASVVAKQLLNGEKVVVVNAEKIVISGNFYRNKLKYKEFLRKRTLTNPRRGPFFPRAPSRIFRRTVRG 80 (142)
T ss_pred CEEeCCCCchHHHHHHHHHHHhcCCEEEEEechHheecCchhhheeEEEEECCCCCcccCCHHHhhhcCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999998766666667667999999999999999999
Q ss_pred cCCCCChhHHHHhccceeecCCCCCccccCccccCcCc
Q 032954 92 MIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDAL 129 (130)
Q Consensus 92 MLPkkn~~gr~~l~rLkvy~g~~~p~~~q~~~~~p~a~ 129 (130)
|||+||.+|+.+|+||+||+|+||||++|+++++|+|+
T Consensus 81 MLPk~~~~Gr~~~krLkvy~G~~h~~~~qk~~~~~~a~ 118 (142)
T TIGR01077 81 MLPHKTARGRAALRRLKVYVGIPPELDKKKRVVVPEAL 118 (142)
T ss_pred hCCCCChhHHHHHhCcEEecCCCCCccccCccccChhh
Confidence 99996699999999999999999999999999999985
No 6
>COG0102 RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.3e-48 Score=286.66 Aligned_cols=118 Identities=38% Similarity=0.597 Sum_probs=109.4
Q ss_pred CCCCceeeeEEEEeCCCCchhhHHHHHHHHHh------------CCCEEEEEeccceeecCccchhhhheeeeecccccC
Q 032954 2 VSGSGICAKRVVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNT 69 (130)
Q Consensus 2 ~~~~~~~r~w~viDA~~~~lGRLAs~VAk~L~------------~Gd~VvViNaeki~~tG~k~~~k~~y~~~l~~~~~~ 69 (130)
.+++++.++|+||||+|++||||||.||++|+ |||+|||||||+|+|||+|..+|.||+ |++
T Consensus 6 ~k~~~~~r~w~vIDA~g~vLGRLAs~VA~~Lrgkhkp~ytP~~d~Gd~ViVINAeKv~iTG~K~~~k~yy~------hs~ 79 (148)
T COG0102 6 AKPSEVERKWYVIDAEGKVLGRLASEVAKRLRGKHKPTYTPHVDTGDYVIVINAEKVVITGKKLTDKKYYR------HSG 79 (148)
T ss_pred cCcccccceEEEEeCCCCChHHHHHHHHHHHhcCCCCCcCcCcCCCCEEEEEeceeeEEecccccceEEEE------eec
Confidence 46778999999999999999999999999997 779999999999999999999999997 788
Q ss_pred CCCC-------CCccccCchHhHHHHHHccCCCCChhHHHHhccceeecCCCCCccccCccccC
Q 032954 70 KPSH-------GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIP 126 (130)
Q Consensus 70 ~pg~-------~~~~~r~P~~i~~~aVrgMLPkkn~~gr~~l~rLkvy~g~~~p~~~q~~~~~p 126 (130)
+||+ +++.+|.|++||++||+||||+ |.+||.+|+||+||.|+||||.+|+|..+.
T Consensus 80 ~~gglk~~t~~~~~~~r~P~ri~~~AVrGMLPk-~~lGr~~~krLkVy~G~~h~~~aq~p~~l~ 142 (148)
T COG0102 80 YPGGLKNPTRGGPLAPRRPERILERAVRGMLPK-NPLGRAALKRLKVYAGIPHPHEAQKPEALE 142 (148)
T ss_pred cCCcccccccccccccCCHHHHHHHHHhccCCC-ChhHHHHHhCceEecCCCCccccccchhhh
Confidence 8874 5666699999999999999998 999999999999999999999999997654
No 7
>PRK06394 rpl13p 50S ribosomal protein L13P; Reviewed
Probab=100.00 E-value=2.9e-47 Score=284.40 Aligned_cols=120 Identities=43% Similarity=0.615 Sum_probs=114.0
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEeccceeecCccchhhhheeeeecccccCCCCC-CCccccCchHhHHHH
Q 032954 10 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH-GPIHFRAPAKIFWRT 88 (130)
Q Consensus 10 ~w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViNaeki~~tG~k~~~k~~y~~~l~~~~~~~pg~-~~~~~r~P~~i~~~a 88 (130)
+.+||||+||+||||||.||++|++||+|||||||+|++||+|++++.+|++|++.++..+|+. +++++++|++||++|
T Consensus 3 ~~~viDA~~~vlGRLAs~IA~~L~~Gd~VVViNa~kv~~tG~K~~~~~~y~~~~~~k~~~np~~~~~~~~r~P~~il~~A 82 (146)
T PRK06394 3 AMVVIDAEGQILGRLASYVAKRLLEGEEVVIVNAEKAVITGNRERVIEKYKQRRERGSHYNPYRNGPKYPRRPDRIFKRT 82 (146)
T ss_pred ccEEEECCCCchHHHHHHHHHHHhCCCEEEEEechheEecCchhhheeeEeCCCCCcccCCCCChHHhhhcCHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999888888888888889964 999999999999999
Q ss_pred HHccCCCCChhHHHHhccceeecCCCCCccccCccccCcCc
Q 032954 89 VRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDAL 129 (130)
Q Consensus 89 VrgMLPkkn~~gr~~l~rLkvy~g~~~p~~~q~~~~~p~a~ 129 (130)
|+||||+||++|+.+|+||+||+|+||||++|+|+++|.|+
T Consensus 83 V~gMLP~kn~~gr~~~~rLkvy~G~~h~~~~qkp~~~~~a~ 123 (146)
T PRK06394 83 IRGMLPYKKPRGREALKRLKVYVGVPKELEGKEFEVIDEAD 123 (146)
T ss_pred HHhcCCCCChhHHHHHhCcEEecCCCCCcccCCCEEecHHH
Confidence 99999966999999999999999999999999999999886
No 8
>PF00572 Ribosomal_L13: Ribosomal protein L13; InterPro: IPR005822 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L13 is one of the proteins from the large ribosomal subunit []. In Escherichia coli, L13 is known to be one of the early assembly proteins of the 50S ribosomal subunit.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 4A17_I 4A1E_I 4A1A_I 4A1C_I 3D5B_N 3MS1_J 1VSP_H 3PYT_J 3PYO_J 3PYV_J ....
Probab=100.00 E-value=5.3e-47 Score=277.65 Aligned_cols=109 Identities=42% Similarity=0.650 Sum_probs=104.7
Q ss_pred EEEEeCCCCchhhHHHHHHHHHh------------CCCEEEEEeccceeecCccchhhhheeeeecccccCCCCC-----
Q 032954 11 RVVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH----- 73 (130)
Q Consensus 11 w~viDA~~~~lGRLAs~VAk~L~------------~Gd~VvViNaeki~~tG~k~~~k~~y~~~l~~~~~~~pg~----- 73 (130)
|+||||+||+||||||.||++|+ |||+|||||||+|++||++|.+|.||+ |++|||+
T Consensus 1 W~viDA~~~~lGRLAs~iAk~L~GKhk~~y~p~~d~Gd~VvViNae~i~~tG~k~~~k~y~~------h~~~~g~~~~~~ 74 (128)
T PF00572_consen 1 WYVIDAKGQILGRLASKIAKLLLGKHKPTYTPNVDCGDHVVVINAEKIVLTGKKWRQKVYYR------HTGYPGGLKNPT 74 (128)
T ss_dssp EEEEETTTBBHHHHHHHHHHHHCTTSSTSSBTTSSTTEEEEEECGGGBEESSHHHHHHHHHH------EHSSSTSCEEEE
T ss_pred CEEEeCCCCchHHHHHHHHHHHhCCCCCccCcCccCCCEEEEEcCeeeEecCCeecceEEEe------ecccchhhcccc
Confidence 99999999999999999999999 999999999999999999999999997 7899986
Q ss_pred -CCccccCchHhHHHHHHccCCCCChhHHHHhccceeecCCCCCccccCccccC
Q 032954 74 -GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIP 126 (130)
Q Consensus 74 -~~~~~r~P~~i~~~aVrgMLPkkn~~gr~~l~rLkvy~g~~~p~~~q~~~~~p 126 (130)
+.+++++|++||++||+||||+ |.+|+++|+||+||+|+||||++|+|++++
T Consensus 75 ~~~~~~~~P~~i~~~aVrgMLP~-n~~g~~~l~rL~vy~g~~hp~~~~~~~~~~ 127 (128)
T PF00572_consen 75 AKGLHEKDPSRILKRAVRGMLPK-NKLGREALKRLKVYPGEPHPHAAQKPVVLE 127 (128)
T ss_dssp CHHHHCSSHHHHHHHHHHTTSTT-SHHHHHHHTTEEEESSSSCSTTSSSCBEEE
T ss_pred hhhhhhcCHHHHHHHHHHHHCCC-ChhhhHHhhceEEECCCCCChhccCCEeCC
Confidence 5667799999999999999998 999999999999999999999999999986
No 9
>PLN00205 ribisomal protein L13 family protein; Provisional
Probab=100.00 E-value=6.3e-46 Score=286.70 Aligned_cols=115 Identities=19% Similarity=0.302 Sum_probs=107.6
Q ss_pred CceeeeEEEEeCCCCchhhHHHHHHHHHh------------CCCEEEEEeccceeecCccchhhhheeeeecccccCCCC
Q 032954 5 SGICAKRVVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPS 72 (130)
Q Consensus 5 ~~~~r~w~viDA~~~~lGRLAs~VAk~L~------------~Gd~VvViNaeki~~tG~k~~~k~~y~~~l~~~~~~~pg 72 (130)
+.-.++|+||||+||+||||||.||++|+ |||+|||||||+|+|||+||.+|.||+ ||||||
T Consensus 11 ~~~~r~W~VIDA~~~iLGRLAS~IAk~L~GKhKP~ytP~~D~GD~VVVINAekI~lTG~K~~~K~Y~~------htgypG 84 (191)
T PLN00205 11 NLEGLRWRVFDAKGQVLGRLASQISTVLQGKDKPTYAPNRDDGDICIVLNAKDISVTGRKLTDKFYRW------HTGYIG 84 (191)
T ss_pred ccCCCcEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCCcCCCCEEEEEeccEEEEeCChhhcceEEE------ecCCCC
Confidence 34578999999999999999999999999 999999999999999999999999987 899999
Q ss_pred C------CCccccCchHhHHHHHHccCCCCChhHHHHhccceeecCCCCCccccCccccC
Q 032954 73 H------GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIP 126 (130)
Q Consensus 73 ~------~~~~~r~P~~i~~~aVrgMLPkkn~~gr~~l~rLkvy~g~~~p~~~q~~~~~p 126 (130)
+ +++++++|++||++||+||||+ |.+|+.+++||+||+|+||||++|+|+++.
T Consensus 85 glk~~~~~~~~~r~P~~Il~kAVrGMLPk-n~lr~~~~krLkVY~G~~hp~~~q~p~~~~ 143 (191)
T PLN00205 85 HLKERSLKDQMAKDPTEVIRKAVLRMLPR-NRLRDDRDRKLRIFAGSEHPFGDKPLEPFV 143 (191)
T ss_pred CcccccHHHHhccCHHHHHHHHHHhcCCC-CchHHHHHhCCEEECCCCCChhccCCeEec
Confidence 7 7799999999999999999998 788888999999999999999999986643
No 10
>cd00392 Ribosomal_L13 Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the polypeptide exit site. It interacts with proteins L3 and L6, and forms an extensive network of interactions with 23S rRNA. L13 has been identified as a homolog of the human breast basic conserved protein 1 (BBC1), a protein identified through its increased expression in breast cancer. L13 expression is also upregulated in a variety of human gastrointestinal cancers, suggesting it may play a role in the etiology of a variety of human malignancies.
Probab=100.00 E-value=1.1e-42 Score=250.56 Aligned_cols=96 Identities=52% Similarity=0.756 Sum_probs=91.5
Q ss_pred EEEEeCCCCchhhHHHHHHHHHh------------CCCEEEEEeccceeecCccchhhhheeeeecccccCCCCC-----
Q 032954 11 RVVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH----- 73 (130)
Q Consensus 11 w~viDA~~~~lGRLAs~VAk~L~------------~Gd~VvViNaeki~~tG~k~~~k~~y~~~l~~~~~~~pg~----- 73 (130)
|+||||+||+||||||.||++|+ |||+|||||||+|++||++|++|.||+ |++|||+
T Consensus 1 w~viDA~~~~lGRlAs~iA~~L~gKhKp~y~p~~d~Gd~VvViNa~~i~~tG~k~~~k~y~~------~~~~~g~~~~~~ 74 (114)
T cd00392 1 WHVIDAKGQVLGRLASKVAKLLLGKHKPTYTPHVDCGDYVVVVNAEKIVITGKKWRQKVYYR------HTGYPGGLKNPT 74 (114)
T ss_pred CEEEeCCCCchHHHHHHHHHHHcCCCCCCcCCCccCCCEEEEEeccEEEEeCchhhccceEE------eccCCCCCccCC
Confidence 99999999999999999999998 599999999999999999999999997 7778775
Q ss_pred -CCccccCchHhHHHHHHccCCCCChhHHHHhccceeecCC
Q 032954 74 -GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGV 113 (130)
Q Consensus 74 -~~~~~r~P~~i~~~aVrgMLPkkn~~gr~~l~rLkvy~g~ 113 (130)
+++++++|++||++||+||||+ |.+|+++|+||+||+|+
T Consensus 75 ~~~~~~~~P~~il~~aV~gMLPk-n~~g~~~l~rLkvy~g~ 114 (114)
T cd00392 75 AGPLHPRAPERILKRAVRGMLPK-NKLGRAALKRLKVYEGA 114 (114)
T ss_pred cchhhhhCHHHHHHHHHHhcCCC-ChhHHHHHhCcEEeCCC
Confidence 9999999999999999999995 99999999999999985
No 11
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-41 Score=254.72 Aligned_cols=118 Identities=30% Similarity=0.419 Sum_probs=110.0
Q ss_pred CceeeeEEEEeCCCCchhhHHHHHHHHHh------------CCCEEEEEeccceeecCccchhhhheeeeecccccCCCC
Q 032954 5 SGICAKRVVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPS 72 (130)
Q Consensus 5 ~~~~r~w~viDA~~~~lGRLAs~VAk~L~------------~Gd~VvViNaeki~~tG~k~~~k~~y~~~l~~~~~~~pg 72 (130)
..|+|.|+||||++|+||||||+||..|+ |||+|||+||++|.|||+||.+|.|++ |+||||
T Consensus 17 ~afaRvW~vvDa~~q~lGrLAs~ia~~L~GkhKPiYhP~~DcGD~VVV~N~~~Ia~sG~K~~qk~Y~~------HsGyPG 90 (165)
T KOG3203|consen 17 LAFARVWHVVDAKQQPLGRLASQIATTLQGKHKPIYHPSTDCGDHVVVTNCKKIAFSGKKWEQKIYRS------HSGYPG 90 (165)
T ss_pred HHHhhhheeeccccCchHHHHHHHHHHHhhccCCccCCccCCCCEEEEecchhheeccchhhhhhhhh------cCCCCC
Confidence 46889999999999999999999999996 999999999999999999999999986 999999
Q ss_pred C------CCccccCchHhHHHHHHccCCCCChhHHHHhccceeecCCCCC------ccccCccccCcCc
Q 032954 73 H------GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAP------YDKVKRMVIPDAL 129 (130)
Q Consensus 73 ~------~~~~~r~P~~i~~~aVrgMLPkkn~~gr~~l~rLkvy~g~~~p------~~~q~~~~~p~a~ 129 (130)
+ ..++.++|++|+++||+||||+ |.+||..|+||++|+|.+|| ++.++|..+|.-+
T Consensus 91 ~lk~~~~~q~~~rdp~~Iv~~AV~gMLPk-N~Lrr~~~~rL~lf~g~e~p~~~Ni~~~~~q~~~vp~r~ 158 (165)
T KOG3203|consen 91 GLKQTTADQLADRDPCRIVRLAVYGMLPK-NLLRRRRMQRLHLFPGEEHPEKVNIGSELHQPQGVPKRL 158 (165)
T ss_pred chhhhHHHHHhhhCHHHHHHHHHHhhCcc-chHHHHHhheeeccCCccCchhhhhHHHhccccCCCchh
Confidence 7 6677899999999999999997 99999999999999999999 7778888887643
No 12
>KOG3204 consensus 60S ribosomal protein L13a [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.2e-30 Score=199.99 Aligned_cols=117 Identities=62% Similarity=1.049 Sum_probs=111.1
Q ss_pred eeeeEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEeccceeecCccchhhhheeeeecccccCCCCCCCccccCchHhHH
Q 032954 7 ICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFW 86 (130)
Q Consensus 7 ~~r~w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViNaeki~~tG~k~~~k~~y~~~l~~~~~~~pg~~~~~~r~P~~i~~ 86 (130)
...+-.+||+.+|++|||||.||+.|+.|+.|||+.||.|.|||+.+++| .||++++.++ |++|++.|++||+
T Consensus 3 ~~~~~~vidg~~hllGrlAa~vaK~ll~g~kvvvvr~E~i~isg~f~r~k----~~lrk~~~~n---g~~hfr~ps~i~~ 75 (197)
T KOG3204|consen 3 LEVKLVVIDGRGHLLGRLAAIVAKQLLLGRKVVVVRCEEINISGNFYRNK----LFLRKRLNRN---GPFHFRAPSRILQ 75 (197)
T ss_pred ceEEEeeccchhhhhhhHHHHHHHHHhcCCeEEEEEEeEEEEecceecch----HHHhhhhccc---CcchhhhHHHHHH
Confidence 44567899999999999999999999999999999999999999999999 5788888877 9999999999999
Q ss_pred HHHHccCCCCChhHHHHhccceeecCCCCCccccCccccCcCcC
Q 032954 87 RTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALK 130 (130)
Q Consensus 87 ~aVrgMLPkkn~~gr~~l~rLkvy~g~~~p~~~q~~~~~p~a~~ 130 (130)
++|+||+|+++++|+.++++|++|+|.|+|++.|+++++|.|++
T Consensus 76 ~~vrgm~~~kt~rg~aal~~l~~~eGip~~~dk~~r~v~p~a~~ 119 (197)
T KOG3204|consen 76 KAVRGMYPHKTKRGRAALERLRVFEGIPPPYDKQKRLVVPVAFQ 119 (197)
T ss_pred HhhccccccCCCccHHHHHHHHHhCCCCChhhhcCCccCCccee
Confidence 99999999999999999999999999999999999999999974
No 13
>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids. It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C ....
Probab=67.81 E-value=6 Score=26.34 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=16.8
Q ss_pred chhhHHHHHHHHHhCCCEEEEEe
Q 032954 20 MLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 20 ~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
..|.+|..++..|..||.|.|.-
T Consensus 54 ~~g~~A~~~~~~l~kG~~V~V~G 76 (104)
T PF00436_consen 54 AWGKLAENVAEYLKKGDRVYVEG 76 (104)
T ss_dssp EEHHHHHHHHHH--TT-EEEEEE
T ss_pred eeeecccccceEEcCCCEEEEEE
Confidence 35889999999999999888764
No 14
>PHA02754 hypothetical protein; Provisional
Probab=62.07 E-value=15 Score=23.94 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=13.5
Q ss_pred CCCEEEEEeccceeec
Q 032954 34 NGQKVVAVRCEEICMS 49 (130)
Q Consensus 34 ~Gd~VvViNaeki~~t 49 (130)
.||++|||-|+-|++-
T Consensus 43 SGdkIVVi~aD~I~i~ 58 (67)
T PHA02754 43 SGDKIVVITADAIKIE 58 (67)
T ss_pred cCCEEEEEEcceEEEE
Confidence 6999999999988763
No 15
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart
Probab=61.08 E-value=9.8 Score=24.95 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=20.0
Q ss_pred chhhHHHHHHHHHhCCCEEEEEec
Q 032954 20 MLGRLASIVAKELLNGQKVVAVRC 43 (130)
Q Consensus 20 ~lGRLAs~VAk~L~~Gd~VvViNa 43 (130)
.-|.+|..+++.|..||.|+|.-.
T Consensus 50 ~~g~~a~~~~~~~~kG~~V~v~G~ 73 (100)
T cd04496 50 AFGKLAENAAKYLKKGDLVYVEGR 73 (100)
T ss_pred EEhHHHHHHHHHhCCCCEEEEEEE
Confidence 456699999999999999988653
No 16
>COG0629 Ssb Single-stranded DNA-binding protein [DNA replication, recombination, and repair]
Probab=59.99 E-value=8.9 Score=28.71 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.5
Q ss_pred chhhHHHHHHHHHhCCCEEEEEe
Q 032954 20 MLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 20 ~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
+.|++|..++.+|..|+.|+|.-
T Consensus 57 ~wgk~Ae~~~~yl~KG~~V~VeG 79 (167)
T COG0629 57 IWGKLAENAAEYLKKGSLVYVEG 79 (167)
T ss_pred EehHHHHHHHHHhcCCCEEEEEE
Confidence 57899999999999999988864
No 17
>PRK07274 single-stranded DNA-binding protein; Provisional
Probab=58.65 E-value=21 Score=25.80 Aligned_cols=31 Identities=23% Similarity=0.182 Sum_probs=24.7
Q ss_pred eeeEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEe
Q 032954 8 CAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 8 ~r~w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
.-.|+-|= +.|++|..++.+|..|+.|.|--
T Consensus 45 ~t~w~~v~----~fg~~Ae~v~~~l~KG~~V~V~G 75 (131)
T PRK07274 45 EADFINVV----LWGKLAETLASYASKGSLISIDG 75 (131)
T ss_pred EEEEEEEE----EehHHHHHHHHHcCCCCEEEEEE
Confidence 35677664 45889999999999999988754
No 18
>PRK05853 hypothetical protein; Validated
Probab=58.08 E-value=11 Score=28.65 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.8
Q ss_pred chhhHHHHHHHHHhCCCEEEEEe
Q 032954 20 MLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 20 ~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
+.|++|..++++|..|+.|+|.-
T Consensus 49 ~wg~lAe~v~~~L~KG~~V~V~G 71 (161)
T PRK05853 49 CWGRLVTGVGAALGKGAPVIVVG 71 (161)
T ss_pred EEhHHHHHHHHHcCCCCEEEEEE
Confidence 67899999999999999999875
No 19
>PRK06752 single-stranded DNA-binding protein; Validated
Probab=57.14 E-value=10 Score=26.55 Aligned_cols=30 Identities=13% Similarity=-0.006 Sum_probs=23.5
Q ss_pred eeEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEe
Q 032954 9 AKRVVVDARHHMLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 9 r~w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
-.|+=+- +.|++|..++.+|..||.|.|.-
T Consensus 46 t~~~~v~----~wg~~Ae~~~~~l~KG~~V~V~G 75 (112)
T PRK06752 46 VDFINCV----VWRKSAENVTEYCTKGSLVGITG 75 (112)
T ss_pred EEEEEEE----EehHHHHHHHHhcCCCCEEEEEE
Confidence 3565443 66789999999999999988864
No 20
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=54.43 E-value=12 Score=29.10 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.5
Q ss_pred chhhHHHHHHHHHhCCCEEEEEe
Q 032954 20 MLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 20 ~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
+.|.+|..+|+.|..||.|+|.=
T Consensus 59 ~Wg~~Ae~va~~L~KGd~V~V~G 81 (186)
T PRK07772 59 IWRQAAENVAESLTKGMRVIVTG 81 (186)
T ss_pred EecHHHHHHHHhcCCCCEEEEEE
Confidence 67889999999999999999864
No 21
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=53.70 E-value=18 Score=26.83 Aligned_cols=15 Identities=13% Similarity=0.383 Sum_probs=12.2
Q ss_pred CCCEEEEEeccceee
Q 032954 34 NGQKVVAVRCEEICM 48 (130)
Q Consensus 34 ~Gd~VvViNaeki~~ 48 (130)
+|+.-||+||.++-+
T Consensus 53 TGENaIv~n~~~aDi 67 (131)
T PF12953_consen 53 TGENAIVVNARKADI 67 (131)
T ss_pred cccchheeccCCCCE
Confidence 689999999988643
No 22
>PRK08182 single-stranded DNA-binding protein; Provisional
Probab=53.53 E-value=13 Score=27.61 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.2
Q ss_pred chhhHHHHHHHHHhCCCEEEEEe
Q 032954 20 MLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 20 ~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
..|++|..++++|..||.|.|.-
T Consensus 60 ~wg~~Ae~v~~~l~KG~~V~V~G 82 (148)
T PRK08182 60 LWHRDAEHWARLYQKGMRVLVEG 82 (148)
T ss_pred EEhHHHHHHHHhcCCCCEEEEEE
Confidence 67889999999999999988864
No 23
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=52.80 E-value=17 Score=28.80 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=22.2
Q ss_pred eeeEEEEe-CC---CCchhhHHHHHHHHHhCCCEEEE
Q 032954 8 CAKRVVVD-AR---HHMLGRLASIVAKELLNGQKVVA 40 (130)
Q Consensus 8 ~r~w~viD-A~---~~~lGRLAs~VAk~L~~Gd~VvV 40 (130)
.+.|+||| +. .|+++-|.. .+.++..|++.||
T Consensus 110 ~~~vlVilDs~H~~~hvl~eL~~-y~plv~~G~Y~IV 145 (206)
T PF04989_consen 110 PHPVLVILDSSHTHEHVLAELEA-YAPLVSPGSYLIV 145 (206)
T ss_dssp -SSEEEEESS----SSHHHHHHH-HHHT--TT-EEEE
T ss_pred CCceEEEECCCccHHHHHHHHHH-hCccCCCCCEEEE
Confidence 45677776 44 589999998 8898999999988
No 24
>PRK06863 single-stranded DNA-binding protein; Provisional
Probab=52.04 E-value=17 Score=27.71 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=24.3
Q ss_pred eeEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEe
Q 032954 9 AKRVVVDARHHMLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 9 r~w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
-.|+=|. +.|++|..++++|..|+.|.|.-
T Consensus 51 t~w~~Vv----~fgk~AE~v~~~LkKGs~V~VeG 80 (168)
T PRK06863 51 TEWHRIV----FYRRQAEVAGEYLRKGSQVYVEG 80 (168)
T ss_pred ceEEEEE----EEhHHHHHHHHHCCCCCEEEEEE
Confidence 3577664 56889999999999999988864
No 25
>PRK08486 single-stranded DNA-binding protein; Provisional
Probab=51.74 E-value=13 Score=28.69 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=19.5
Q ss_pred chhhHHHHHHHHHhCCCEEEEEe
Q 032954 20 MLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 20 ~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
+.|++|..++++|..|+.|.|--
T Consensus 55 ~fg~~AE~~~~~l~KG~~V~VeG 77 (182)
T PRK08486 55 LFGRTAEIANQYLSKGSKVLIEG 77 (182)
T ss_pred EEhHHHHHHHHHcCCCCEEEEEE
Confidence 57899999999999998877753
No 26
>PRK08763 single-stranded DNA-binding protein; Provisional
Probab=51.47 E-value=13 Score=28.18 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.1
Q ss_pred chhhHHHHHHHHHhCCCEEEEEe
Q 032954 20 MLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 20 ~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
+.|++|..++.+|..|+.|.|--
T Consensus 58 ~fgk~Ae~v~~~L~KGs~V~VeG 80 (164)
T PRK08763 58 FFGKLGEIAGEYLRKGSQCYIEG 80 (164)
T ss_pred EehHHHHHHHHhcCCCCEEEEEE
Confidence 66899999999999999988754
No 27
>PRK07275 single-stranded DNA-binding protein; Provisional
Probab=51.34 E-value=13 Score=28.11 Aligned_cols=23 Identities=13% Similarity=0.030 Sum_probs=20.0
Q ss_pred chhhHHHHHHHHHhCCCEEEEEe
Q 032954 20 MLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 20 ~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
+.|++|..+|++|..|+.|.|--
T Consensus 53 ~wgk~Ae~~~~~l~KG~~V~VeG 75 (162)
T PRK07275 53 IWRQQAENLANWAKKGALIGVTG 75 (162)
T ss_pred EEcHHHHHHHHHcCCCCEEEEEE
Confidence 67899999999999999887753
No 28
>PRK13732 single-stranded DNA-binding protein; Provisional
Probab=51.24 E-value=13 Score=28.56 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=23.3
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEe
Q 032954 10 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 10 ~w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
.|+-|- +.|++|..++.+|..|+.|.|.-
T Consensus 54 ~w~~Vv----~wgk~Ae~v~~~L~KG~~V~VeG 82 (175)
T PRK13732 54 EWHRVV----LFGKLAEVAGEYLRKGAQVYIEG 82 (175)
T ss_pred eEEEEE----EecHHHHHHHHhcCCCCEEEEEE
Confidence 465554 56789999999999999998864
No 29
>TIGR00621 ssb single stranded DNA-binding protein (ssb). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.06 E-value=13 Score=27.81 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.3
Q ss_pred chhhHHHHHHHHHhCCCEEEEEe
Q 032954 20 MLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 20 ~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
+.|++|..+++.|..|+.|.|.-
T Consensus 57 ~wg~~Ae~~~~~l~KG~~V~V~G 79 (164)
T TIGR00621 57 IFGRLAEVAAQYLKKGSLVYVEG 79 (164)
T ss_pred EehHHHHHHHHhCCCCCEEEEEE
Confidence 67889999999999999998864
No 30
>PRK09010 single-stranded DNA-binding protein; Provisional
Probab=50.81 E-value=19 Score=27.76 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=23.7
Q ss_pred eeEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEe
Q 032954 9 AKRVVVDARHHMLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 9 r~w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
-.|+=| .+.|++|..++++|..|+.|.|.-
T Consensus 53 t~w~~V----~~fgk~Ae~~~~~L~KGs~V~VeG 82 (177)
T PRK09010 53 TEWHRV----VLFGKLAEVAGEYLRKGSQVYIEG 82 (177)
T ss_pred eEEEEE----EEehhHHHHHHHhcCCCCEEEEEE
Confidence 346555 367889999999999999888864
No 31
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=50.58 E-value=30 Score=23.61 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=24.3
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEeccc
Q 032954 10 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEE 45 (130)
Q Consensus 10 ~w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViNaek 45 (130)
--+||||++. .-++..+...|..|-+||..|-.=
T Consensus 60 ~dvvVE~t~~--~~~~~~~~~~L~~G~~VVt~nk~a 93 (117)
T PF03447_consen 60 IDVVVECTSS--EAVAEYYEKALERGKHVVTANKGA 93 (117)
T ss_dssp -SEEEE-SSC--HHHHHHHHHHHHTTCEEEES-HHH
T ss_pred CCEEEECCCc--hHHHHHHHHHHHCCCeEEEECHHH
Confidence 3489999776 446677888888999999998553
No 32
>PRK07459 single-stranded DNA-binding protein; Provisional
Probab=50.53 E-value=16 Score=26.16 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.2
Q ss_pred chhhHHHHHHHHHhCCCEEEEEe
Q 032954 20 MLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 20 ~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
..|++|..++++|..|+.|.|--
T Consensus 50 ~wg~~Ae~~~~~l~KG~~V~V~G 72 (121)
T PRK07459 50 IWGKTAQVAADYVKKGSLIGITG 72 (121)
T ss_pred EehHHHHHHHHHcCCCCEEEEEE
Confidence 57889999999999999988864
No 33
>PRK06751 single-stranded DNA-binding protein; Provisional
Probab=48.77 E-value=14 Score=28.28 Aligned_cols=29 Identities=21% Similarity=0.056 Sum_probs=22.4
Q ss_pred eeEEEEeCCCCchhhHHHHHHHHHhCCCEEEEE
Q 032954 9 AKRVVVDARHHMLGRLASIVAKELLNGQKVVAV 41 (130)
Q Consensus 9 r~w~viDA~~~~lGRLAs~VAk~L~~Gd~VvVi 41 (130)
..|+-|= +.|++|..++.+|..|+.|.|-
T Consensus 46 tdwi~~v----~wgk~Ae~~~~~l~KG~~V~Ve 74 (173)
T PRK06751 46 ADFINCV----IWRKQAENVANYLKKGSLAGVD 74 (173)
T ss_pred EEEEEEE----EeCcHHHHHHHHcCCCCEEEEE
Confidence 3566553 6778999999999988887774
No 34
>PRK05733 single-stranded DNA-binding protein; Provisional
Probab=47.12 E-value=30 Score=26.50 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=24.1
Q ss_pred eeEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEe
Q 032954 9 AKRVVVDARHHMLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 9 r~w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
-.|+-|. +.|++|..++.+|..|+.|.|--
T Consensus 52 T~w~~Vv----~fgk~Ae~v~~~l~KGs~V~VeG 81 (172)
T PRK05733 52 TEWHRVS----LFGKVAEIAGEYLRKGSQVYIEG 81 (172)
T ss_pred ceEEEEE----EehHHHHHHHHHhCCCCEEEEEE
Confidence 4577665 56889999999999999988753
No 35
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=41.53 E-value=21 Score=24.48 Aligned_cols=13 Identities=23% Similarity=0.486 Sum_probs=10.8
Q ss_pred eeeeEEEEeCCCC
Q 032954 7 ICAKRVVVDARHH 19 (130)
Q Consensus 7 ~~r~w~viDA~~~ 19 (130)
..|.|.|.|+.|+
T Consensus 31 ~sR~W~I~d~~g~ 43 (90)
T PF04379_consen 31 LSRHWIITDADGH 43 (90)
T ss_dssp EEEEEEEEETTS-
T ss_pred EccEEEEEeCCCC
Confidence 5799999999985
No 36
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=39.92 E-value=28 Score=27.00 Aligned_cols=29 Identities=34% Similarity=0.401 Sum_probs=23.2
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEe
Q 032954 10 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 10 ~w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
.|+-|- +.|++|..+++.|..|+.|.|.-
T Consensus 52 ~w~~V~----~fGk~AE~v~~~LkKGs~V~VeG 80 (182)
T PRK06958 52 EWHRVA----FFGRLAEIVGEYLKKGSSVYIEG 80 (182)
T ss_pred eEEEEE----EehHHHHHHHHHhCCCCEEEEEE
Confidence 466554 56789999999999999888864
No 37
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=38.39 E-value=36 Score=28.17 Aligned_cols=32 Identities=34% Similarity=0.419 Sum_probs=25.1
Q ss_pred CCCchhhHHHHHHH---HHhCCCEEEEEeccceee
Q 032954 17 RHHMLGRLASIVAK---ELLNGQKVVAVRCEEICM 48 (130)
Q Consensus 17 ~~~~lGRLAs~VAk---~L~~Gd~VvViNaeki~~ 48 (130)
.|--|||||+.|-. +=+.|..|++|-+.-|.|
T Consensus 27 ~~laLgrla~IVEqV~~L~~~G~evilVSSGaVA~ 61 (285)
T KOG1154|consen 27 CGLALGRLASIVEQVSELQRMGREVILVSSGAVAF 61 (285)
T ss_pred ccchHHHHHHHHHHHHHHHhcCceEEEEecchhhh
Confidence 34489999997654 335899999999888887
No 38
>PRK06293 single-stranded DNA-binding protein; Provisional
Probab=33.99 E-value=39 Score=25.67 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=22.8
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEe
Q 032954 10 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 10 ~w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
.|+=+= ..|.+|..++++|..|+.|.|--
T Consensus 43 ~wi~v~----awg~~Ae~v~~yL~KG~~V~VeG 71 (161)
T PRK06293 43 VWCRCN----IWGNRYDKMLPYLKKGSGVIVAG 71 (161)
T ss_pred EEEEEE----EEhHHHHHHHHhCCCCCEEEEEE
Confidence 465443 46789999999999999988865
No 39
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=31.59 E-value=94 Score=23.19 Aligned_cols=40 Identities=10% Similarity=0.099 Sum_probs=28.3
Q ss_pred eeeEEEEeCCCCchhhHHHHHHHHHhCCC-----EEEEEecc-ceee
Q 032954 8 CAKRVVVDARHHMLGRLASIVAKELLNGQ-----KVVAVRCE-EICM 48 (130)
Q Consensus 8 ~r~w~viDA~~~~lGRLAs~VAk~L~~Gd-----~VvViNae-ki~~ 48 (130)
+..|.++|..|..+|+.....+. +..|. .|+|+|.+ +|.+
T Consensus 5 ~E~~~~vd~~~~~~g~~~r~~~~-~~~~~~h~av~v~i~~~~g~vLL 50 (184)
T PRK03759 5 TELVVLLDEQGVPTGTAEKAAAH-TADTPLHLAFSCYLFDADGRLLV 50 (184)
T ss_pred ceeEEEECCCCCCcccccHHHHH-hcCCCeeeEEEEEEEcCCCeEEE
Confidence 35699999999999998888776 44442 36667754 3444
No 40
>PRK06642 single-stranded DNA-binding protein; Provisional
Probab=31.43 E-value=41 Score=25.04 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=19.1
Q ss_pred chh-hHHHHHHHHHhCCCEEEEEe
Q 032954 20 MLG-RLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 20 ~lG-RLAs~VAk~L~~Gd~VvViN 42 (130)
+.| ++|..++++|..|+.|.|.-
T Consensus 59 ~~g~~~Ae~~~~~l~KG~~V~V~G 82 (152)
T PRK06642 59 IFSEGLVSVVERYVTKGSKLYIEG 82 (152)
T ss_pred EeChHHHHHHHHhCCCCCEEEEEE
Confidence 346 49999999999999988864
No 41
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=31.24 E-value=91 Score=24.14 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=31.0
Q ss_pred eeEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEeccc
Q 032954 9 AKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEE 45 (130)
Q Consensus 9 r~w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViNaek 45 (130)
+--+|.|-+|..+-+++..+|+.+..++.|+|.-.+.
T Consensus 94 ~~lIvtdPkG~~is~vk~~L~~~~r~~~eV~v~iGSR 130 (173)
T PF14419_consen 94 EPLIVTDPKGDPISEVKDKLAEDLRYAKEVVVFIGSR 130 (173)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhCcEEEEEEEcc
Confidence 3457889999999999999999999999988765443
No 42
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=29.82 E-value=40 Score=24.58 Aligned_cols=14 Identities=14% Similarity=0.202 Sum_probs=11.8
Q ss_pred ceeeeEEEEeCCCC
Q 032954 6 GICAKRVVVDARHH 19 (130)
Q Consensus 6 ~~~r~w~viDA~~~ 19 (130)
-..|.|.|.|+.|+
T Consensus 47 L~~R~W~I~d~~g~ 60 (127)
T PRK05461 47 LLSRHWLITDANGR 60 (127)
T ss_pred EEeeeEEEEECCCC
Confidence 35799999999876
No 43
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=29.76 E-value=1.3e+02 Score=22.50 Aligned_cols=39 Identities=5% Similarity=0.001 Sum_probs=26.8
Q ss_pred ceeeeEEEEeCCCCchhhHHHHHHHHH---hCCCEEEEEecc
Q 032954 6 GICAKRVVVDARHHMLGRLASIVAKEL---LNGQKVVAVRCE 44 (130)
Q Consensus 6 ~~~r~w~viDA~~~~lGRLAs~VAk~L---~~Gd~VvViNae 44 (130)
.-+.-|-|+|..|+++|+.....+..- ..+-.|+|+|.+
T Consensus 7 ~~~e~~~~~d~~~~~~g~~~~~~~~~~~~~h~~~~v~v~~~~ 48 (180)
T PRK15393 7 ASTEWVDIVNENNEVIAQASREQMRAQCLRHRATYIVVHDGM 48 (180)
T ss_pred CCceEEEEECCCCCEeeEEEHHHHhhCCCceEEEEEEEECCC
Confidence 345669999999999999854444421 134567788864
No 44
>PTZ00302 N-acetylglucosamine-phosphate mutase; Provisional
Probab=29.37 E-value=89 Score=28.41 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=31.1
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHhC-CCEEEEEecc
Q 032954 10 KRVVVDARHHMLGRLASIVAKELLN-GQKVVAVRCE 44 (130)
Q Consensus 10 ~w~viDA~~~~lGRLAs~VAk~L~~-Gd~VvViNae 44 (130)
.-++||+.+=+-|..+..+.+.|.+ |-.|+++|++
T Consensus 246 ~kVvVD~ANGvg~~~~~~ll~~L~~~g~~v~~in~~ 281 (585)
T PTZ00302 246 KILVVDCANGVGGYKIKRFFEALKQLGIEIIPININ 281 (585)
T ss_pred CeEEEECCCcHHHHHHHHHHHHhhhCCCEEEEEecC
Confidence 5699999999999999999998876 7799999975
No 45
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=28.21 E-value=41 Score=24.75 Aligned_cols=15 Identities=7% Similarity=0.122 Sum_probs=13.0
Q ss_pred ceeeeEEEEeCCCCc
Q 032954 6 GICAKRVVVDARHHM 20 (130)
Q Consensus 6 ~~~r~w~viDA~~~~ 20 (130)
.++|-|+|=||.|++
T Consensus 46 LlsR~W~ITd~~g~v 60 (126)
T COG2967 46 LLSRYWLITDGNGRV 60 (126)
T ss_pred eeeeEEEEecCCCcE
Confidence 468999999999985
No 46
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=27.51 E-value=79 Score=22.96 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHHh-CCCEEEEEecc
Q 032954 21 LGRLASIVAKELL-NGQKVVAVRCE 44 (130)
Q Consensus 21 lGRLAs~VAk~L~-~Gd~VvViNae 44 (130)
+|++.+-+|+.|. .|..|.+.|-.
T Consensus 9 lG~mG~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 9 LGNMGSAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp -SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred hHHHHHHHHHHHHhcCCeEEeeccc
Confidence 6999999999987 79999999843
No 47
>PRK02801 primosomal replication protein N; Provisional
Probab=27.07 E-value=57 Score=22.45 Aligned_cols=29 Identities=10% Similarity=0.164 Sum_probs=23.5
Q ss_pred EEEeCCCCchhhHHHHHHHHHhCCCEEEEEe
Q 032954 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 12 ~viDA~~~~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
.-|++ ...|.+|..++++|..|+.|-|--
T Consensus 48 ~~i~~--va~G~~Ae~~~~~l~kGs~v~V~G 76 (101)
T PRK02801 48 CRMPV--IVSGNQFQAITQSITVGSKITVQG 76 (101)
T ss_pred EEEEE--EEEcHHHHHHHhhcCCCCEEEEEE
Confidence 44666 488999999999999998877643
No 48
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=26.86 E-value=1.5e+02 Score=19.65 Aligned_cols=32 Identities=22% Similarity=0.461 Sum_probs=24.3
Q ss_pred EEEEeCCCCchhhHHHHHHHHHhCCCEEEEEecc
Q 032954 11 RVVVDARHHMLGRLASIVAKELLNGQKVVAVRCE 44 (130)
Q Consensus 11 w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViNae 44 (130)
-++||+-+=.-+-....+.+.| |-.++.+|+.
T Consensus 23 kivvD~~~G~~~~~~~~ll~~l--g~~~~~~n~~ 54 (104)
T PF02879_consen 23 KIVVDCMNGAGSDILPRLLERL--GCDVIELNCD 54 (104)
T ss_dssp EEEEE-TTSTTHHHHHHHHHHT--TCEEEEESSS
T ss_pred EEEEECCCCHHHHHHHHHHHHc--CCcEEEEecc
Confidence 5899999988888888888865 4477778864
No 49
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=26.71 E-value=1e+02 Score=27.04 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=30.1
Q ss_pred EEEeCCCCchhhHHHHHHH-HHhCCCEEEEEeccceeecCccch
Q 032954 12 VVVDARHHMLGRLASIVAK-ELLNGQKVVAVRCEEICMSGGLVR 54 (130)
Q Consensus 12 ~viDA~~~~lGRLAs~VAk-~L~~Gd~VvViNaeki~~tG~k~~ 54 (130)
.||||+|++. ..++++- .++.|.|||..|.|-=+.-|.-..
T Consensus 104 vIIdATG~p~--vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk 145 (438)
T COG4091 104 VIIDATGVPE--VGAKIALEAILHGKHLVMMNVEADVTIGPILK 145 (438)
T ss_pred EEEEcCCCcc--hhhHhHHHHHhcCCeEEEEEeeeceeecHHHH
Confidence 6999999975 3444443 345899999999997777777543
No 50
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=26.13 E-value=35 Score=22.11 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=24.8
Q ss_pred CCCceeeeEEEEeCCCCchhhHHHHHHHHHh
Q 032954 3 SGSGICAKRVVVDARHHMLGRLASIVAKELL 33 (130)
Q Consensus 3 ~~~~~~r~w~viDA~~~~lGRLAs~VAk~L~ 33 (130)
....+.+.=.|+|.+|.++|||..--++.|.
T Consensus 5 ~G~~Vnk~G~V~d~~G~~vG~vveGd~k~L~ 35 (64)
T PF12396_consen 5 EGLTVNKDGNVVDDDGNVVGRVVEGDPKKLV 35 (64)
T ss_pred CCCEECCCCeEECCCCCEEEEEecCCHHHhc
Confidence 3455666678999999999999888777664
No 51
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=25.82 E-value=72 Score=21.26 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHhCCC-EEEEEecccee
Q 032954 21 LGRLASIVAKELLNGQ-KVVAVRCEEIC 47 (130)
Q Consensus 21 lGRLAs~VAk~L~~Gd-~VvViNaeki~ 47 (130)
.|+++..+|+.|..+. .|++|..+.-.
T Consensus 6 ~g~~~~~i~~~L~~~~~~vvvid~d~~~ 33 (116)
T PF02254_consen 6 YGRIGREIAEQLKEGGIDVVVIDRDPER 33 (116)
T ss_dssp -SHHHHHHHHHHHHTTSEEEEEESSHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEEECCcHH
Confidence 4789999999998766 78888766543
No 52
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=25.73 E-value=86 Score=27.35 Aligned_cols=36 Identities=19% Similarity=0.142 Sum_probs=26.8
Q ss_pred HHHHHHHHHh-CCCEEEEEeccceeecCccc-hhhhhe
Q 032954 24 LASIVAKELL-NGQKVVAVRCEEICMSGGLV-RQKMKY 59 (130)
Q Consensus 24 LAs~VAk~L~-~Gd~VvViNaeki~~tG~k~-~~k~~y 59 (130)
..+++++.|. .|-+||+||..-..+.+++. .++.|+
T Consensus 17 sG~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~ 54 (400)
T COG0458 17 SGTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYI 54 (400)
T ss_pred hHHHHHHHHHhcCCeEEEEcCCCccccCCchhcceeee
Confidence 4567777776 79999999999988877664 445444
No 53
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=24.90 E-value=73 Score=24.86 Aligned_cols=22 Identities=41% Similarity=0.641 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHh-CCCEEEEEe
Q 032954 21 LGRLASIVAKELL-NGQKVVAVR 42 (130)
Q Consensus 21 lGRLAs~VAk~L~-~Gd~VvViN 42 (130)
+||+...+|+.|. .|+.|++|-
T Consensus 8 ~G~vG~~va~~L~~~g~~Vv~Id 30 (225)
T COG0569 8 AGRVGRSVARELSEEGHNVVLID 30 (225)
T ss_pred CcHHHHHHHHHHHhCCCceEEEE
Confidence 5888999999886 566666554
No 54
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=24.70 E-value=44 Score=26.78 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=17.2
Q ss_pred ceeeeEEEEeCCCCchhhHH
Q 032954 6 GICAKRVVVDARHHMLGRLA 25 (130)
Q Consensus 6 ~~~r~w~viDA~~~~lGRLA 25 (130)
....+|++.|.+|++.|.=+
T Consensus 132 ~~v~rw~~yDkeG~VYg~PS 151 (231)
T COG5493 132 YVVERWLYYDKEGHVYGHPS 151 (231)
T ss_pred hheeeEEEEcCCcceecCCc
Confidence 45689999999999999754
No 55
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.35 E-value=1.2e+02 Score=26.18 Aligned_cols=34 Identities=26% Similarity=0.247 Sum_probs=29.0
Q ss_pred eeeEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEecc
Q 032954 8 CAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCE 44 (130)
Q Consensus 8 ~r~w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViNae 44 (130)
..+|+-|-+-|= ||.+|.+.||. .|-+|++|-..
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKA--MG~rV~vis~~ 214 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKA--MGMRVTVISTS 214 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHH--hCcEEEEEeCC
Confidence 568998888888 99999999994 49999998754
No 56
>PF06088 TLP-20: Nucleopolyhedrovirus telokin-like protein-20 (TLP20); InterPro: IPR009092 The baculovirus, Autographa californica nuclear polyhedrosis virus (AcMNPV), telokin-like protein (Tlp20) lies in a region of the baculoviral genome that is expressed late in the viral replication cycle, however its function is unknown. Tlp20 was discovered using anti-telokin antibodies, telokin being the C-terminal domain of smooth-muscle myosin light-chain kinase []. Both Tlp20 and telokin display a seven-stranded antiparallel beta-barrel structure, although the 3-dimensional structures of the beta-barrels are different and there is no sequence homology between the two. Tlp20 is structurally similar to dUTPase in its fold and trimeric assembly [].; PDB: 1TUL_A.
Probab=24.11 E-value=51 Score=25.42 Aligned_cols=12 Identities=33% Similarity=0.296 Sum_probs=9.0
Q ss_pred CCCEEEEEeccc
Q 032954 34 NGQKVVAVRCEE 45 (130)
Q Consensus 34 ~Gd~VvViNaek 45 (130)
|||+||+.|+-.
T Consensus 67 ~gdY~V~~N~~~ 78 (169)
T PF06088_consen 67 CGDYVVVYNFVE 78 (169)
T ss_dssp SSSEEEEEE--S
T ss_pred cCCEEEEEEeec
Confidence 899999998755
No 57
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=23.99 E-value=2.2e+02 Score=20.18 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=16.7
Q ss_pred eeEEEEeCC-CCchhhHHHHHHHHH
Q 032954 9 AKRVVVDAR-HHMLGRLASIVAKEL 32 (130)
Q Consensus 9 r~w~viDA~-~~~lGRLAs~VAk~L 32 (130)
++.++|..+ +...|.+|++++..-
T Consensus 2 K~vivVr~DL~m~~GKiaAQ~~HAa 26 (115)
T cd02430 2 KMVLVVRNDLKMGKGKIAAQCAHAA 26 (115)
T ss_pred EEEEEEeCCCCCCcchHHHHHHHHH
Confidence 345566544 678999999987644
No 58
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=23.84 E-value=54 Score=23.86 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=26.1
Q ss_pred EEEeCCCCchhhHHHHHHHHHhCC-----CEEEEEecc-ceee
Q 032954 12 VVVDARHHMLGRLASIVAKELLNG-----QKVVAVRCE-EICM 48 (130)
Q Consensus 12 ~viDA~~~~lGRLAs~VAk~L~~G-----d~VvViNae-ki~~ 48 (130)
.|+|..|+.+|+.....+. ++.| =.|+|+|.+ +|-+
T Consensus 2 ~~~d~~~~~~g~~~r~~~~-~~~g~~h~~v~v~v~~~~g~vLl 43 (158)
T TIGR02150 2 ILVDENDNPIGTASKAEVH-LQETPLHRAFSVFLFNEEGQLLL 43 (158)
T ss_pred EEECCCCCEeeeeeHHHhh-hcCCCeEEEEEEEEEcCCCeEEE
Confidence 5899999999998777775 4334 358888875 4444
No 59
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=23.01 E-value=1.7e+02 Score=19.67 Aligned_cols=55 Identities=15% Similarity=0.307 Sum_probs=27.2
Q ss_pred CEEEEEeccceeecCc----cchhhhheeeeecccccCCCCC-CCccccCchH---hHHHHHHccCCC
Q 032954 36 QKVVAVRCEEICMSGG----LVRQKMKYMRFLRKRMNTKPSH-GPIHFRAPAK---IFWRTVRGMIPH 95 (130)
Q Consensus 36 d~VvViNaeki~~tG~----k~~~k~~y~~~l~~~~~~~pg~-~~~~~r~P~~---i~~~aVrgMLPk 95 (130)
..++|++..++.++-- .+-.+. + ..-...||.. +.++--+|.. .++.+++.+++.
T Consensus 63 ~~~~i~D~~~~~~~~~~~~~~~~k~~-~----~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~ 125 (157)
T cd00170 63 GFVVIIDLKGLSLSHLLPDPSLLKKI-L----KILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSE 125 (157)
T ss_pred ceEEEEECCCCChhccchhHHHHHHH-H----HHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCH
Confidence 5677777776665421 111111 1 1113445554 5555555554 445566666664
No 60
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=22.93 E-value=1e+02 Score=22.65 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=23.3
Q ss_pred EEEeCCCCc-----hhhHHHHHHHHHh-CCCEEEEEe
Q 032954 12 VVVDARHHM-----LGRLASIVAKELL-NGQKVVAVR 42 (130)
Q Consensus 12 ~viDA~~~~-----lGRLAs~VAk~L~-~Gd~VvViN 42 (130)
+.+|-+|+. -|++|...|+.|+ .|..|+||+
T Consensus 7 ~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 7 LMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred eEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 456666663 2789998888775 799999995
No 61
>PF07552 Coat_X: Spore Coat Protein X and V domain; InterPro: IPR011428 This domain is found in the Bacilli coat protein X as a tandem repeat and as a single domain in coat protein V. The proteins are found in the insoluble fraction [].; GO: 0030435 sporulation resulting in formation of a cellular spore, 0031160 spore wall
Probab=22.91 E-value=62 Score=20.77 Aligned_cols=18 Identities=11% Similarity=0.200 Sum_probs=15.0
Q ss_pred CCCEEEEEeccceeecCc
Q 032954 34 NGQKVVAVRCEEICMSGG 51 (130)
Q Consensus 34 ~Gd~VvViNaeki~~tG~ 51 (130)
.-++++|.||++|.+|-.
T Consensus 19 s~q~I~I~dS~~V~Vttt 36 (60)
T PF07552_consen 19 SRQKIIIKDSCNVTVTTT 36 (60)
T ss_pred cceEEEEEcCCCCEEeeh
Confidence 357899999999998754
No 62
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=22.40 E-value=65 Score=27.49 Aligned_cols=49 Identities=31% Similarity=0.414 Sum_probs=36.0
Q ss_pred EEEeCCCCchhhH-------HHHHHHHHhCCCEEEEEeccceeecCccchhhhheeeeec
Q 032954 12 VVVDARHHMLGRL-------ASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLR 64 (130)
Q Consensus 12 ~viDA~~~~lGRL-------As~VAk~L~~Gd~VvViNaeki~~tG~k~~~k~~y~~~l~ 64 (130)
+++|-+|--+|.- |.++||.|-.|..||.|=|+ ||.+.-.|.|-..||+
T Consensus 318 ~Ll~~dGLFvGsSsa~N~VaAv~vAk~LgpG~~iVtilCD----sG~rh~sk~~~~~~l~ 373 (391)
T KOG1481|consen 318 YLLDNDGLFVGSSSALNCVAAVRVAKTLGPGHTIVTILCD----SGSRHLSKLFSESFLE 373 (391)
T ss_pred HhhhcCceEecchhhHHHHHHHHHHHhcCCCceEEEEEeC----CcchHHHHhcCHHHHh
Confidence 5666667766653 56789999999999999887 6887777765544554
No 63
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=22.34 E-value=3.1e+02 Score=19.82 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=22.5
Q ss_pred eeEEEEeCCCCchhhHHHHHHHHHhCCCE------EEEEecc
Q 032954 9 AKRVVVDARHHMLGRLASIVAKELLNGQK------VVAVRCE 44 (130)
Q Consensus 9 r~w~viDA~~~~lGRLAs~VAk~L~~Gd~------VvViNae 44 (130)
..|-|+|..|++.|.-.-..+. . .|.. |+|+|.+
T Consensus 2 e~~~~~d~~~~~~g~~~r~~~~-~-~~~~~~~~v~v~i~~~~ 41 (165)
T cd02885 2 ELVILVDEDDNPIGTAEKLEAH-L-KGTLLHRAFSVFLFNSK 41 (165)
T ss_pred cEEEEECCCCCCccccCHHHHh-h-cCCcceeEEEEEEEcCC
Confidence 4688999999999964444443 3 3433 6677764
No 64
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=21.70 E-value=1.5e+02 Score=23.76 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=23.1
Q ss_pred eeeEEEEeCCCCchhhHHHHHHHHHhCCC-EEEEE
Q 032954 8 CAKRVVVDARHHMLGRLASIVAKELLNGQ-KVVAV 41 (130)
Q Consensus 8 ~r~w~viDA~~~~lGRLAs~VAk~L~~Gd-~VvVi 41 (130)
..++++|-+.| .+|.+|.++|+.+ |- .|+++
T Consensus 169 ~g~~VlV~G~G-~vG~~aiqlak~~--G~~~Vi~~ 200 (343)
T PRK09880 169 QGKRVFVSGVG-PIGCLIVAAVKTL--GAAEIVCA 200 (343)
T ss_pred CCCEEEEECCC-HHHHHHHHHHHHc--CCcEEEEE
Confidence 35678888876 8999999999965 54 45544
No 65
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=21.56 E-value=1e+02 Score=19.74 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=14.5
Q ss_pred HHHHHHHHhCCCEEEEEeccceee
Q 032954 25 ASIVAKELLNGQKVVAVRCEEICM 48 (130)
Q Consensus 25 As~VAk~L~~Gd~VvViNaeki~~ 48 (130)
|..++..|+.| ++|++|-+.+.-
T Consensus 12 ~~~i~~~l~~g-~~Vivnl~~l~~ 34 (73)
T PF04472_consen 12 AREIVDALREG-KIVIVNLENLDD 34 (73)
T ss_dssp HHHHHHHHHTT---EEEE-TTS-H
T ss_pred HHHHHHHHHcC-CEEEEECCCCCH
Confidence 56688888888 566889877653
No 66
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=21.36 E-value=1.1e+02 Score=23.56 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHh-CCCEEEEEec
Q 032954 22 GRLASIVAKELL-NGQKVVAVRC 43 (130)
Q Consensus 22 GRLAs~VAk~L~-~Gd~VvViNa 43 (130)
|.+|...|+.|+ .|-.|+||+-
T Consensus 19 G~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 19 GKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred CHHHHHHHHHHHHCCCeEEEEcC
Confidence 788888877665 7888999963
No 67
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=21.24 E-value=1.1e+02 Score=23.34 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=24.3
Q ss_pred eeeEEEEeCCCCch---------hhHHHHHHHHHh-----------------CCCEEEEEe
Q 032954 8 CAKRVVVDARHHML---------GRLASIVAKELL-----------------NGQKVVAVR 42 (130)
Q Consensus 8 ~r~w~viDA~~~~l---------GRLAs~VAk~L~-----------------~Gd~VvViN 42 (130)
.|..+|||.+|.+. ||-...+-..|. .||.|+|.-
T Consensus 117 ~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq~~~~~~~~~p~~w~~g~~~~~~~ 177 (203)
T cd03016 117 VRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQLTDKHKVATPANWKPGDDVIVPP 177 (203)
T ss_pred eeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhhHhhcCcCcCCCCCCCCceecCC
Confidence 57789999888764 665556655452 688888764
No 68
>PF02721 DUF223: Domain of unknown function DUF223; InterPro: IPR003871 The function of this domain has not been characterised, but may be involved in nucleic acid or nucleotide binding.
Probab=21.13 E-value=2.2e+02 Score=18.83 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=28.7
Q ss_pred EEEeCCCC-----chhhHHHHHHHHHhCCCE------EEEEeccceeecCcc
Q 032954 12 VVVDARHH-----MLGRLASIVAKELLNGQK------VVAVRCEEICMSGGL 52 (130)
Q Consensus 12 ~viDA~~~-----~lGRLAs~VAk~L~~Gd~------VvViNaeki~~tG~k 52 (130)
+++|.+|. +...+...-+..|.+|.- .|.-|......|..+
T Consensus 3 vL~De~G~~I~A~I~~~~~~~f~~~l~Eg~~y~i~~F~V~~~~~~yr~t~h~ 54 (95)
T PF02721_consen 3 VLVDEKGDKIQATIPKELVDKFKDSLKEGSWYTISNFTVSPNSGSYRPTDHK 54 (95)
T ss_pred EEEecCCCEEEEEECHHHHHHHHhhcccCCEEEeEeEEEEeCCCceeccCCC
Confidence 57777775 567888888998999954 444555666666554
No 69
>PF08980 DUF1883: Domain of unknown function (DUF1883); InterPro: IPR015073 This family consist of hypothetical bacterial proteins. ; PDB: 2B1Y_A.
Probab=21.03 E-value=26 Score=24.57 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=3.8
Q ss_pred HhCCCEEEEEeccceee
Q 032954 32 LLNGQKVVAVRCEEICM 48 (130)
Q Consensus 32 L~~Gd~VvViNaeki~~ 48 (130)
|..||.|+|..++...+
T Consensus 11 ~~~Gd~V~V~ls~~~nV 27 (94)
T PF08980_consen 11 LKRGDTVVVRLSHQANV 27 (94)
T ss_dssp --TT-------SSS---
T ss_pred cCCCCEEEEEeCCcccE
Confidence 45789888888776655
No 70
>PF08859 DGC: DGC domain; InterPro: IPR014958 This protein appears to be a zinc binding domain from the conservation of four potential chelating cysteines. The protein is named after a conserved central motif, the function is unknown.
Probab=21.00 E-value=1.9e+02 Score=20.23 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=15.6
Q ss_pred EEeCCCC-chhhHHHHHHHHHh
Q 032954 13 VVDARHH-MLGRLASIVAKELL 33 (130)
Q Consensus 13 viDA~~~-~lGRLAs~VAk~L~ 33 (130)
|+=++|. ..|.||.++|..|.
T Consensus 3 v~~CSG~s~~Gqla~~aA~~l~ 24 (110)
T PF08859_consen 3 VFPCSGCSNVGQLANQAAVELT 24 (110)
T ss_pred EEECCCCChHhHHHHHHHHHHH
Confidence 4445554 58999999999885
No 71
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=20.72 E-value=1.6e+02 Score=23.16 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=24.6
Q ss_pred eeeEEEEeCCCCchhhHHHHHHHHHhCCC-EEEEEe
Q 032954 8 CAKRVVVDARHHMLGRLASIVAKELLNGQ-KVVAVR 42 (130)
Q Consensus 8 ~r~w~viDA~~~~lGRLAs~VAk~L~~Gd-~VvViN 42 (130)
..++++|.|.+ -+|.++.++|+.+ |- .|+++-
T Consensus 165 ~~~~VLI~g~g-~vG~~~~~lak~~--G~~~v~~~~ 197 (339)
T cd08232 165 AGKRVLVTGAG-PIGALVVAAARRA--GAAEIVATD 197 (339)
T ss_pred CCCEEEEECCC-HHHHHHHHHHHHc--CCcEEEEEC
Confidence 46788898865 9999999999965 65 666653
No 72
>PF03621 MbtH: MbtH-like protein; InterPro: IPR005153 This domain is found in the MbtH protein O05821 from SWISSPROT as well as at the N terminus of the antibiotic synthesis protein NIKP1. This domain is about 70 amino acids long and contains 3 fully conserved tryptophan residues. Many of the members of this family are found in known antibiotic synthesis gene clusters.; PDB: 2PST_X 2GPF_A 2LPD_A 2KHR_A.
Probab=20.70 E-value=73 Score=19.93 Aligned_cols=12 Identities=33% Similarity=0.357 Sum_probs=8.0
Q ss_pred CCCEEEEEeccc
Q 032954 34 NGQKVVAVRCEE 45 (130)
Q Consensus 34 ~Gd~VvViNaek 45 (130)
.|.+.||+|.|+
T Consensus 10 ~~~f~VlvN~e~ 21 (54)
T PF03621_consen 10 DGTFLVLVNDEG 21 (54)
T ss_dssp -S-EEEEEETT-
T ss_pred CCeEEEEEcCCC
Confidence 367899999875
No 73
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=20.58 E-value=86 Score=24.92 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=19.9
Q ss_pred eeEEEEeCCCCchhhHHHHHHHHHh
Q 032954 9 AKRVVVDARHHMLGRLASIVAKELL 33 (130)
Q Consensus 9 r~w~viDA~~~~lGRLAs~VAk~L~ 33 (130)
+--+||||+|+- +++++.+++.+.
T Consensus 158 ~Ak~VVdATG~~-a~v~~~l~~~~~ 181 (254)
T TIGR00292 158 RSRVVVDATGHD-AEIVAVCAKKIV 181 (254)
T ss_pred EcCEEEEeecCC-chHHHHHHHHcC
Confidence 345899999987 799999999875
No 74
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=20.52 E-value=1.8e+02 Score=19.09 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=26.1
Q ss_pred EEEEeCCCC----chhhHHHHHHHHHhCCCEEEEEecccee
Q 032954 11 RVVVDARHH----MLGRLASIVAKELLNGQKVVAVRCEEIC 47 (130)
Q Consensus 11 w~viDA~~~----~lGRLAs~VAk~L~~Gd~VvViNaeki~ 47 (130)
-.++|++|. ++-+....+++ |..|+.+.|+-.+-..
T Consensus 5 ~~~LD~rG~~CP~Pv~~~kk~l~~-m~~Ge~LeV~~ddp~~ 44 (78)
T COG0425 5 DKVLDLRGLRCPGPVVETKKALAK-LKPGEILEVIADDPAA 44 (78)
T ss_pred ceEEeccCCcCCccHHHHHHHHHc-CCCCCEEEEEecCcch
Confidence 468999998 45666666766 7899998777655443
No 75
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=20.49 E-value=1.2e+02 Score=23.06 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHh-CCCEEEEEecc
Q 032954 21 LGRLASIVAKELL-NGQKVVAVRCE 44 (130)
Q Consensus 21 lGRLAs~VAk~L~-~Gd~VvViNae 44 (130)
+|++++.+|+.|. .|..|++++..
T Consensus 36 ~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 36 LGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4788888999886 79999987644
No 76
>cd00235 TLP-20 Telokin-like protein-20 (TLP-20) domain; a baculovirus protein that shares some antigenic similarities to the smooth muscle protein telokin, a kinase-related protein
Probab=20.28 E-value=69 Score=23.01 Aligned_cols=11 Identities=18% Similarity=0.175 Sum_probs=9.9
Q ss_pred CCCEEEEEecc
Q 032954 34 NGQKVVAVRCE 44 (130)
Q Consensus 34 ~Gd~VvViNae 44 (130)
|||++|+.|.-
T Consensus 67 cGdY~v~~N~~ 77 (108)
T cd00235 67 CGDYTVVYNLN 77 (108)
T ss_pred cCCEEEEEEcc
Confidence 89999999974
No 77
>PRK12829 short chain dehydrogenase; Provisional
Probab=20.08 E-value=1.9e+02 Score=21.70 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=20.8
Q ss_pred eeEEEEeCCCCchhhHHHHHHHHHh-CCCEEEEEe
Q 032954 9 AKRVVVDARHHMLGRLASIVAKELL-NGQKVVAVR 42 (130)
Q Consensus 9 r~w~viDA~~~~lGRLAs~VAk~L~-~Gd~VvViN 42 (130)
+.++|+.|. |.+++.+|+.|. .|..|+++.
T Consensus 12 ~~vlItGa~----g~iG~~~a~~L~~~g~~V~~~~ 42 (264)
T PRK12829 12 LRVLVTGGA----SGIGRAIAEAFAEAGARVHVCD 42 (264)
T ss_pred CEEEEeCCC----CcHHHHHHHHHHHCCCEEEEEe
Confidence 556666665 556677777765 688887775
Done!