Query 032954
Match_columns 130
No_of_seqs 136 out of 1046
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 12:52:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032954.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032954hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_K 60S ribosomal protein L 100.0 3.2E-56 1.1E-60 346.9 9.4 130 1-130 1-130 (206)
2 3r8s_J 50S ribosomal protein L 100.0 1.5E-52 5.3E-57 310.4 9.0 119 1-126 5-141 (142)
3 1j3a_A 50S ribosomal protein L 100.0 1.1E-52 3.6E-57 311.4 8.1 113 11-129 1-119 (142)
4 4a17_I RPL13A, 60S ribosomal p 100.0 2.1E-52 7.1E-57 323.9 8.9 122 8-129 2-123 (198)
5 3v2d_N 50S ribosomal protein L 100.0 5.8E-52 2E-56 306.7 8.5 114 6-126 8-139 (140)
6 2zkr_j 60S ribosomal protein L 100.0 5.2E-51 1.8E-55 317.1 8.1 124 7-130 2-125 (203)
7 2ftc_H L13MT, MRP-L13, 39S rib 100.0 9.7E-51 3.3E-55 302.5 9.0 117 3-126 7-144 (148)
8 4b6a_O 60S ribosomal protein L 100.0 1.1E-50 3.9E-55 314.3 9.6 122 8-129 3-124 (199)
9 3jyw_M 60S ribosomal protein L 100.0 4.8E-51 1.6E-55 312.1 7.3 119 12-130 1-119 (178)
10 1vq8_J 50S ribosomal protein L 100.0 1.3E-50 4.5E-55 301.0 8.6 115 6-129 4-120 (145)
11 2zjr_G 50S ribosomal protein L 100.0 4.9E-50 1.7E-54 305.0 11.8 114 7-127 37-168 (174)
12 3f1f_N 50S ribosomal protein L 100.0 7.1E-51 2.4E-55 306.8 6.2 114 6-126 31-162 (163)
13 3bbo_L Ribosomal protein L13; 100.0 3E-49 1E-53 313.3 4.9 121 3-130 103-244 (250)
14 3koj_A Uncharacterized protein 75.7 1.7 5.8E-05 29.8 2.5 23 20-42 59-81 (108)
15 3stb_C RNA-editing complex pro 72.4 4.8 0.00016 29.3 4.3 35 5-42 81-115 (148)
16 4dam_A Single-stranded DNA-bin 65.1 4 0.00014 28.5 2.6 33 10-46 63-95 (128)
17 3vdy_A SSB, single-stranded DN 63.0 4.8 0.00016 27.2 2.6 23 20-42 56-78 (116)
18 3ulp_A Single-strand binding p 59.3 5.4 0.00019 27.3 2.3 22 21-42 61-83 (124)
19 2vw9_A Single-stranded DNA bin 59.0 6 0.00021 27.6 2.6 23 20-42 55-77 (134)
20 1z9f_A Single-strand binding p 58.1 6.2 0.00021 28.4 2.6 22 21-42 70-91 (153)
21 3afp_A Single-stranded DNA-bin 56.1 6.9 0.00024 28.4 2.6 23 21-43 60-82 (168)
22 1eqq_A Single stranded DNA bin 55.4 6.7 0.00023 28.9 2.4 23 20-42 60-82 (178)
23 1qvc_A Single stranded DNA bin 54.1 7.8 0.00027 27.4 2.5 22 21-42 60-81 (145)
24 3tqy_A Single-stranded DNA-bin 52.6 7.6 0.00026 27.9 2.3 23 21-43 63-85 (158)
25 3ull_A DNA binding protein; DN 52.4 7.7 0.00026 26.8 2.2 22 21-42 74-96 (132)
26 3k7u_C MP18 RNA editing comple 49.8 8.6 0.00029 27.6 2.1 30 9-42 51-81 (148)
27 3eiv_A Single-stranded DNA-bin 46.1 12 0.0004 28.3 2.5 22 21-42 60-81 (199)
28 3lgj_A Single-stranded DNA-bin 45.7 12 0.0004 27.4 2.3 29 10-42 71-100 (169)
29 3k81_C MP18 RNA editing comple 43.5 12 0.00042 27.4 2.2 30 9-42 67-97 (164)
30 1txy_A Primosomal replication 41.6 6.8 0.00023 26.0 0.5 23 20-42 54-76 (104)
31 2f1e_A Protein APAG; APAG prot 38.9 16 0.00054 25.7 2.0 15 6-20 47-61 (127)
32 1xvs_A Protein APAG; MCSG APC2 37.9 17 0.00058 25.5 2.1 15 6-20 46-60 (126)
33 1tza_A APAG protein, SOR45; st 35.2 19 0.00066 25.5 2.0 15 6-20 46-60 (134)
34 1xq4_A Protein APAG; all beta 33.2 20 0.00069 25.6 1.9 15 6-20 51-65 (139)
35 4dni_A Fusion protein of RNA-e 30.3 28 0.00094 27.2 2.4 39 20-60 78-117 (257)
36 3pgz_A Single-stranded DNA-bin 29.2 28 0.00097 26.1 2.2 22 21-42 81-103 (193)
37 3fwz_A Inner membrane protein 28.3 44 0.0015 22.2 2.9 35 5-44 4-39 (140)
38 2h6e_A ADH-4, D-arabinose 1-de 26.4 79 0.0027 24.2 4.4 34 8-42 170-203 (344)
39 2fxq_A Single-strand binding p 25.9 21 0.00071 27.4 0.9 23 20-42 58-80 (264)
40 1id1_A Putative potassium chan 25.6 46 0.0016 22.3 2.6 30 9-43 4-34 (153)
41 1v1q_A Primosomal replication 22.9 11 0.00038 26.7 -1.1 23 20-42 71-93 (134)
42 3llv_A Exopolyphosphatase-rela 22.6 58 0.002 21.3 2.6 23 22-44 15-38 (141)
43 2fxq_A Single-strand binding p 22.1 32 0.0011 26.3 1.3 21 21-42 179-199 (264)
44 3l4b_C TRKA K+ channel protien 22.0 69 0.0024 22.8 3.1 23 21-43 8-31 (218)
45 3two_A Mannitol dehydrogenase; 21.6 1.1E+02 0.0037 23.4 4.4 31 9-42 177-207 (348)
46 1iuk_A Hypothetical protein TT 21.6 1.8E+02 0.0063 19.6 5.2 36 8-44 13-49 (140)
47 1y81_A Conserved hypothetical 21.1 2E+02 0.0068 19.4 5.3 43 8-51 14-57 (138)
48 3s2e_A Zinc-containing alcohol 21.0 1.4E+02 0.0046 22.7 4.8 31 9-42 167-197 (340)
49 1lss_A TRK system potassium up 20.4 90 0.0031 19.8 3.2 29 10-43 6-35 (140)
50 1se8_A Single-strand binding p 20.4 40 0.0014 26.6 1.6 22 20-41 58-80 (301)
51 1q7s_A BIT1, protein CGI-147; 20.4 1.8E+02 0.0062 19.5 4.8 25 8-32 3-28 (117)
52 1tul_A TLP20; telokin-like pro 20.2 46 0.0016 22.9 1.7 12 34-45 66-77 (108)
53 1e3j_A NADP(H)-dependent ketos 20.1 1.2E+02 0.0041 23.2 4.3 31 9-42 169-199 (352)
No 1
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=100.00 E-value=3.2e-56 Score=346.92 Aligned_cols=130 Identities=92% Similarity=1.450 Sum_probs=127.4
Q ss_pred CCCCCceeeeEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEeccceeecCccchhhhheeeeecccccCCCCCCCccccC
Q 032954 1 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRA 80 (130)
Q Consensus 1 ~~~~~~~~r~w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViNaeki~~tG~k~~~k~~y~~~l~~~~~~~pg~~~~~~r~ 80 (130)
|||+++|+|+|+||||+||+||||||+||++|+|||+|||||||+|++||++|++|.||+||+++++.++|..+++++++
T Consensus 1 ~~~~~~f~r~W~VIDA~g~~LGRLAS~VAk~Ll~Gd~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~np~~~~~~~r~ 80 (206)
T 3iz5_K 1 MVSGSGVCAKRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRA 80 (206)
T ss_dssp CCCSSSCCSSCCEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHHHHTTCSCSSSCSCCCCS
T ss_pred CccccccceeEEEEeCCCCchHHHHHHHHHHHhCCCEEEEEcCcccCcCCchHhhhhheeeecceeecCCCcccchhhcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred chHhHHHHHHccCCCCChhHHHHhccceeecCCCCCccccCccccCcCcC
Q 032954 81 PAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALK 130 (130)
Q Consensus 81 P~~i~~~aVrgMLPkkn~~gr~~l~rLkvy~g~~~p~~~q~~~~~p~a~~ 130 (130)
|++||++||+||||+||++|+.+|+||+||+|+||||++|+++++|+||+
T Consensus 81 P~~Il~~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqk~~vvP~al~ 130 (206)
T 3iz5_K 81 PAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALK 130 (206)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHTTEEEESSCCTTCCSCCBCCTTTBCB
T ss_pred HHHHHHHHHhccCCCCChhHHHHHhCCEEeCCCCCChhhcccccCchHHh
Confidence 99999999999999889999999999999999999999999999999973
No 2
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=100.00 E-value=1.5e-52 Score=310.36 Aligned_cols=119 Identities=24% Similarity=0.373 Sum_probs=113.8
Q ss_pred CCCCCceeeeEEEEeCCCCchhhHHHHHHHHHh------------CCCEEEEEeccceeecCccchhhhheeeeeccccc
Q 032954 1 MVSGSGICAKRVVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMN 68 (130)
Q Consensus 1 ~~~~~~~~r~w~viDA~~~~lGRLAs~VAk~L~------------~Gd~VvViNaeki~~tG~k~~~k~~y~~~l~~~~~ 68 (130)
+.++++++|+|+||||+||+||||||+||++|+ |||+|||||||+|++||++|++|.||+ ||
T Consensus 5 ~~~~~~~~r~W~viDA~g~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~------ht 78 (142)
T 3r8s_J 5 TAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYH------HT 78 (142)
T ss_dssp CCCTTTCCCCEEEEECTTCBHHHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCBCCE------EC
T ss_pred cCChhhccCcEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcccCccCchhhceEEEE------ec
Confidence 467899999999999999999999999999999 999999999999999999999999997 89
Q ss_pred CCCCC------CCccccCchHhHHHHHHccCCCCChhHHHHhccceeecCCCCCccccCccccC
Q 032954 69 TKPSH------GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIP 126 (130)
Q Consensus 69 ~~pg~------~~~~~r~P~~i~~~aVrgMLPkkn~~gr~~l~rLkvy~g~~~p~~~q~~~~~p 126 (130)
||||+ +++++++|++||++||+||||+ |++|+.+|+||+||+|++|||++|+|.++.
T Consensus 79 gypGg~k~~~~~~~~~r~P~~ii~~aVrGMLPk-n~lgr~~l~rLkVy~G~~hph~aq~p~~l~ 141 (142)
T 3r8s_J 79 GHIGGIKQATFEEMIARRPERVIEIAVKGMLPK-GPLGRAMFRKLKVYAGNEHNHAAQQPQVLD 141 (142)
T ss_dssp SSTTCEECCBHHHHHHHCSHHHHHHHHHHHSCS-SHHHHHHHTTEEECSSSCCSCGGGCCEECC
T ss_pred CcCCCccccCHHHHHhhCHHHHHHHHHHhcCCC-ChhHHHHHhCCEEECCCCCCcccCCCeecC
Confidence 99987 7889999999999999999996 999999999999999999999999998764
No 3
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=100.00 E-value=1.1e-52 Score=311.43 Aligned_cols=113 Identities=38% Similarity=0.548 Sum_probs=103.5
Q ss_pred EEEEeCCCCchhhHHHHHHHHHhCCCEEEEEeccceeecCccchhhhheeeeecccccCCCCC------CCccccCchHh
Q 032954 11 RVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH------GPIHFRAPAKI 84 (130)
Q Consensus 11 w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViNaeki~~tG~k~~~k~~y~~~l~~~~~~~pg~------~~~~~r~P~~i 84 (130)
|+||||+||+||||||+||++|+|||+|||||||+|++||+|+++|.||+ |++|||+ +++++++|++|
T Consensus 1 W~viDA~g~~LGRLAs~vAk~L~~Gd~VVViNaeki~iTG~k~~~K~yy~------h~g~~gg~~~~~~~~~~~r~P~~i 74 (142)
T 1j3a_A 1 MRIINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYK------QRTGLRTLTNPRRGPFYPKRSDEI 74 (142)
T ss_dssp CEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHH------HHC-------------CCCSHHHH
T ss_pred CEEEeCCCCchHHHHHHHHHHHhcCCEEEEEeCeeeEecccHHhheeeee------ecCCCCCCcCCccCcccccCHHHH
Confidence 99999999999999999999999999999999999999999999999997 7777775 78999999999
Q ss_pred HHHHHHccCCCCChhHHHHhccceeecCCCCCccccCccccCcCc
Q 032954 85 FWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDAL 129 (130)
Q Consensus 85 ~~~aVrgMLPkkn~~gr~~l~rLkvy~g~~~p~~~q~~~~~p~a~ 129 (130)
|++||+||||+||++|+.+|+||+||+|+||||++|+|+++|.|+
T Consensus 75 i~~aVrGMLP~k~~lgr~~l~rLkVy~G~~hp~~aqkp~~~~~a~ 119 (142)
T 1j3a_A 75 VRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAH 119 (142)
T ss_dssp HHHHHHTTTTTTSHHHHHHHTTEEECSSCCGGGTTSCCBCCGGGB
T ss_pred HHHHHHhhccCCCHHHHHHHhCcEEeCCCCCCccccCcEeccHHH
Confidence 999999999977999999999999999999999999999999986
No 4
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=100.00 E-value=2.1e-52 Score=323.91 Aligned_cols=122 Identities=61% Similarity=1.028 Sum_probs=118.9
Q ss_pred eeeEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEeccceeecCccchhhhheeeeecccccCCCCCCCccccCchHhHHH
Q 032954 8 CAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWR 87 (130)
Q Consensus 8 ~r~w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViNaeki~~tG~k~~~k~~y~~~l~~~~~~~pg~~~~~~r~P~~i~~~ 87 (130)
.++|+||||+||+||||||+||++|+|||+|||||||+|+|||++|++|.||++|+++++..+|..+++++++|++||++
T Consensus 2 ~~~w~VIDA~g~~LGRLAs~VAk~L~~GD~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~~~~~g~~~~r~P~rIi~~ 81 (198)
T 4a17_I 2 FDKLVVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNHNPRRGVQHFRAPSRIFWR 81 (198)
T ss_dssp CSSCEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHHHHHTCCCSSCTTSSCCCCCSHHHHHHH
T ss_pred CccEEEEeCCCCchHHHHHHHHHHHhCCCEEEEEcCccccccCchhhheeeeeeccccccCCCCccccccccCHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HHHccCCCCChhHHHHhccceeecCCCCCccccCccccCcCc
Q 032954 88 TVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDAL 129 (130)
Q Consensus 88 aVrgMLPkkn~~gr~~l~rLkvy~g~~~p~~~q~~~~~p~a~ 129 (130)
||+||||+||++|+.+|+||+||+|+||||++|+++++|+|+
T Consensus 82 AVrGMLPkK~~lGr~~l~rLkVy~G~~hph~aqk~~vvp~al 123 (198)
T 4a17_I 82 AVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDAL 123 (198)
T ss_dssp HHHTTTTTTSHHHHHHHHHCEECSSCCGGGTTSCCBCCGGGB
T ss_pred HHhccCCCCChhHHHHHhCcEEecCCCCChhhccccccchHh
Confidence 999999987999999999999999999999999999999997
No 5
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=100.00 E-value=5.8e-52 Score=306.66 Aligned_cols=114 Identities=27% Similarity=0.413 Sum_probs=110.1
Q ss_pred ceeeeEEEEeCCCCchhhHHHHHHHHHh------------CCCEEEEEeccceeecCccchhhhheeeeecccccCCCCC
Q 032954 6 GICAKRVVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH 73 (130)
Q Consensus 6 ~~~r~w~viDA~~~~lGRLAs~VAk~L~------------~Gd~VvViNaeki~~tG~k~~~k~~y~~~l~~~~~~~pg~ 73 (130)
+++|+|+||||+||+||||||+||++|+ |||+|||||||+|++||++|++|.||+ ||||||+
T Consensus 8 ~~~r~w~viDA~~~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~------htgypGg 81 (140)
T 3v2d_N 8 QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTR------YSGYPGG 81 (140)
T ss_dssp CCCCCEEEEECSSSBTTHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCEEEE------ECSSTTC
T ss_pred cccceEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcceEccCchhhheeeEE------ecccCCc
Confidence 8999999999999999999999999998 999999999999999999999999997 8999997
Q ss_pred ------CCccccCchHhHHHHHHccCCCCChhHHHHhccceeecCCCCCccccCccccC
Q 032954 74 ------GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIP 126 (130)
Q Consensus 74 ------~~~~~r~P~~i~~~aVrgMLPkkn~~gr~~l~rLkvy~g~~~p~~~q~~~~~p 126 (130)
+++++++|++||++||+||||+ |++|+.+|+||+||+|++|||++|+|.++.
T Consensus 82 lk~~~~~~~~~r~P~~ii~~aVrGMLPk-~~lgr~~l~rLkVy~G~~hph~aq~p~~~~ 139 (140)
T 3v2d_N 82 LKKIPLEKMLATHPERVLEHAVKGMLPK-GPLGRRLFKRLKVYAGPDHPHQAQRPEKLE 139 (140)
T ss_dssp EEEEEHHHHHHHCTHHHHHHHHHHTSCS-SHHHHHHHHTEEECSSSCCSCGGGCCEEEC
T ss_pred ceeccHHHhhhhCHHHHHHHHHHhcCCC-ChhHHHHHhCCEEeCCCCCCcccCCCeecC
Confidence 7889999999999999999997 899999999999999999999999998764
No 6
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=5.2e-51 Score=317.10 Aligned_cols=124 Identities=65% Similarity=1.111 Sum_probs=113.5
Q ss_pred eeeeEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEeccceeecCccchhhhheeeeecccccCCCCCCCccccCchHhHH
Q 032954 7 ICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFW 86 (130)
Q Consensus 7 ~~r~w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViNaeki~~tG~k~~~k~~y~~~l~~~~~~~pg~~~~~~r~P~~i~~ 86 (130)
.+++|+||||+||+||||||.||+.|+.||+|||||||+|+|||+++++|.||.+|++++++.+|..|++++++|++||+
T Consensus 2 ~~r~w~VIDA~g~~LGRLAS~VAk~lL~G~~VVVINaeki~iTG~k~~~K~yy~~h~~~~~~~n~~~G~~~~r~P~~I~~ 81 (203)
T 2zkr_j 2 AEVQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNPSRGPYDFRAPSRIFW 81 (203)
T ss_dssp -----CEEECTTBBHHHHHHHHHHHHHHTCCEEEECGGGCEEESCHHHHHHHSSSSSCHHHHCCCSSCCCCCCSHHHHHH
T ss_pred CCccEEEEeCCCCchHHHHHHHHHHHhCCCeEEEEchHHeecCchHHHHHHHHHHHHhhcccCCCCCCccccCChHHHHH
Confidence 57899999999999999999999988889999999999999999999999999777888888888778999999999999
Q ss_pred HHHHccCCCCChhHHHHhccceeecCCCCCccccCccccCcCcC
Q 032954 87 RTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALK 130 (130)
Q Consensus 87 ~aVrgMLPkkn~~gr~~l~rLkvy~g~~~p~~~q~~~~~p~a~~ 130 (130)
+||+||||+||++|+.+|+||+||+|+||||++|+|+++|+|++
T Consensus 82 ~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqkp~vvp~a~~ 125 (203)
T 2zkr_j 82 RTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALK 125 (203)
T ss_dssp HHHHHHSCTTSHHHHHHHHTEEECSCSSCSSSSCCBCCGGGBCC
T ss_pred HHHHhhCCCCChhHHHHHhCcEEeCCCCCchhhcCCcccchhhh
Confidence 99999999988999999999999999999999999999999974
No 7
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=9.7e-51 Score=302.55 Aligned_cols=117 Identities=23% Similarity=0.338 Sum_probs=110.9
Q ss_pred CCCce---eeeEEEEeCCCCchhhHHHHHHHHHh------------CCCEEEEEeccceeecCccchhhhheeeeecccc
Q 032954 3 SGSGI---CAKRVVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRM 67 (130)
Q Consensus 3 ~~~~~---~r~w~viDA~~~~lGRLAs~VAk~L~------------~Gd~VvViNaeki~~tG~k~~~k~~y~~~l~~~~ 67 (130)
++.++ +|+|+||||+||+||||||+||++|+ |||+|||||||+|.+||+||++|.||+ |
T Consensus 7 k~~~~~~~~r~w~viDA~g~~LGRLAs~iA~~L~GKhKp~ytP~~D~Gd~VVViNaeki~~tG~k~~~K~yy~------h 80 (148)
T 2ftc_H 7 APQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKVYSS------H 80 (148)
T ss_pred chhhhhcccCcEEEEeCCCCchHHHHHHHHHHHhccCCCCcCccccCCCEEEEEeceeeEeccchHhhheeee------e
Confidence 44455 99999999999999999999999999 999999999999999999999999997 8
Q ss_pred cCCCCC------CCccccCchHhHHHHHHccCCCCChhHHHHhccceeecCCCCCccccCccccC
Q 032954 68 NTKPSH------GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIP 126 (130)
Q Consensus 68 ~~~pg~------~~~~~r~P~~i~~~aVrgMLPkkn~~gr~~l~rLkvy~g~~~p~~~q~~~~~p 126 (130)
|||||+ +++++++|++||++||+||||+ |++|+.+|+||+||+|++|||++|+|+.+.
T Consensus 81 tg~pGg~k~~~~~~~~~r~P~~ii~~aVrGMLPk-n~lgr~~l~rLkVy~G~~hP~~aq~p~~~~ 144 (148)
T 2ftc_H 81 TGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPK-NLHRRTMMERLHLFPDEYIPEDILKNLVEE 144 (148)
T ss_pred eCCcCCceeccHHHHhhcCHHHHHHHHHHhcCCC-CchHHHHHhCcEEeCCCCCChHHhCCeeec
Confidence 999996 8999999999999999999997 799999999999999999999999998764
No 8
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=100.00 E-value=1.1e-50 Score=314.27 Aligned_cols=122 Identities=57% Similarity=0.987 Sum_probs=113.9
Q ss_pred eeeEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEeccceeecCccchhhhheeeeecccccCCCCCCCccccCchHhHHH
Q 032954 8 CAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWR 87 (130)
Q Consensus 8 ~r~w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViNaeki~~tG~k~~~k~~y~~~l~~~~~~~pg~~~~~~r~P~~i~~~ 87 (130)
+++|+||||+|++||||||.||+.|+.||+|||||||+|.|||+++++|.||+|+++.++..+|..+++++++|++||++
T Consensus 3 ~~~~vVIDA~g~vLGRLAS~VAk~L~~Gd~VVVVNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~~~~~~r~P~~il~~ 82 (199)
T 4b6a_O 3 SQPVVVIDAKDHLLGRLASTIAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILYK 82 (199)
T ss_dssp CCSEEEEECTTBBHHHHHHHHHHHHHTTCEEEEECGGGCEEESCHHHHHHHHHHHHTCCCTTCTTTSCCCCCSHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCEEEEEEchheEEeCcHHHHHHHhhccccccccccCCHHHHhhcCcHHHHHH
Confidence 46899999999999999999999999999999999999999999999999998655555555555599999999999999
Q ss_pred HHHccCCCCChhHHHHhccceeecCCCCCccccCccccCcCc
Q 032954 88 TVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDAL 129 (130)
Q Consensus 88 aVrgMLPkkn~~gr~~l~rLkvy~g~~~p~~~q~~~~~p~a~ 129 (130)
||+||||+||++|+.+|++|+||+|+||||++|+++++|+||
T Consensus 83 aVrGMLP~K~~lGr~~l~rLkVy~G~~hph~aqk~~vvp~Al 124 (199)
T 4b6a_O 83 AIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQAL 124 (199)
T ss_dssp HHHTTSCTTSHHHHHHHHTEEECSSCCSGGGGSCCBBCGGGB
T ss_pred HHhccCCCCChhhhHHHhccEEeCCCCCCcccCCCEecchHH
Confidence 999999987999999999999999999999999999999997
No 9
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=100.00 E-value=4.8e-51 Score=312.06 Aligned_cols=119 Identities=58% Similarity=1.035 Sum_probs=115.6
Q ss_pred EEEeCCCCchhhHHHHHHHHHhCCCEEEEEeccceeecCccchhhhheeeeecccccCCCCCCCccccCchHhHHHHHHc
Q 032954 12 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRG 91 (130)
Q Consensus 12 ~viDA~~~~lGRLAs~VAk~L~~Gd~VvViNaeki~~tG~k~~~k~~y~~~l~~~~~~~pg~~~~~~r~P~~i~~~aVrg 91 (130)
+||||+||+||||||+||++|+|||+|||||||+|.|||+||++|.||+||+++++..+|..+++++++|++||++||+|
T Consensus 1 ~VIDA~g~~LGRLAs~VAk~L~~GD~VVVINaeki~iTG~K~~~K~yy~h~l~~~~~~~~~~~~~~~r~P~~Il~~AVrG 80 (178)
T 3jyw_M 1 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRG 80 (178)
T ss_dssp CCCCCCSSCSHHHHHHHHHHHTTTCCCCEECSTTSCCCCCSSHHHHSCSSSSSSTTSCCCSSSCCCCSSTTTHHHHHTTS
T ss_pred CEEcCCCCchHHHHHHHHHHHhCCCEEEEEeCeeeEEcCchHhhEhheeccCcccccCCccccccccCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred cCCCCChhHHHHhccceeecCCCCCccccCccccCcCcC
Q 032954 92 MIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALK 130 (130)
Q Consensus 92 MLPkkn~~gr~~l~rLkvy~g~~~p~~~q~~~~~p~a~~ 130 (130)
||||||++|+.+|+||+||+|.||||++|+++++|+|++
T Consensus 81 MLP~K~~lGr~~l~rLkVy~G~~hp~~aqk~~vvp~Alr 119 (178)
T 3jyw_M 81 MVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALR 119 (178)
T ss_dssp SSCSSSHHHHHHHHHCCEESSCCCCSCCSCSSSCCSSCC
T ss_pred HhhcccHhHHHHHhCCeeeCCCCCchhhcccccCchHhh
Confidence 999879999999999999999999999999999999974
No 10
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=100.00 E-value=1.3e-50 Score=301.04 Aligned_cols=115 Identities=33% Similarity=0.505 Sum_probs=109.1
Q ss_pred ceeeeEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEeccceeecCccchhhhheeeeecccccCCCCC--CCccccCchH
Q 032954 6 GICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH--GPIHFRAPAK 83 (130)
Q Consensus 6 ~~~r~w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViNaeki~~tG~k~~~k~~y~~~l~~~~~~~pg~--~~~~~r~P~~ 83 (130)
.+.++|+||||+||+||||||+||++|+|||+|||||||+|++||+|+++|.||+ |++|||+ +++++++|++
T Consensus 4 a~~~~w~viDA~g~~LGRLAs~vAk~L~~Gd~VVViNaeki~iTG~k~~~K~yy~------htg~~g~~~~~~~~r~P~~ 77 (145)
T 1vq8_J 4 AEFDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYE------KRVDIGNDNGYFYPKRPDG 77 (145)
T ss_dssp CCCCCSEEEECTTBBHHHHHHHHHHHHHTTCCEEEECGGGCEEESCHHHHHHHHH------HHHHCCCSSCCCCCCSHHH
T ss_pred cccccEEEEeCCCCchHHHHHHHHHHHhcCCEEEEEeCEeeEecchhhhheeeeE------EeCCCCCCHHHHhhcChHH
Confidence 4567899999999999999999999999999999999999999999999999997 6777765 8999999999
Q ss_pred hHHHHHHccCCCCChhHHHHhccceeecCCCCCccccCccccCcCc
Q 032954 84 IFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDAL 129 (130)
Q Consensus 84 i~~~aVrgMLPkkn~~gr~~l~rLkvy~g~~~p~~~q~~~~~p~a~ 129 (130)
||++||+||||+||++|+.+|+||+||+|+||| |+++++|.|+
T Consensus 78 i~~~aVrGMLP~K~~lgr~~l~rLkVy~G~~~p---~k~~vv~~a~ 120 (145)
T 1vq8_J 78 IFKRTIRGMLPHKKQRGREAFESVRVYLGNPYD---EDGEVLDGTS 120 (145)
T ss_dssp HHHHHHHTTTTTTSHHHHHHHHTEEECSSCCSS---SCCBCCTTCB
T ss_pred HHHHHHHhhcCCCCHHHHHHHhCeEEECCCCCC---CCceeeehhh
Confidence 999999999997799999999999999999999 9999999986
No 11
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=100.00 E-value=4.9e-50 Score=304.99 Aligned_cols=114 Identities=27% Similarity=0.395 Sum_probs=110.3
Q ss_pred eeeeEEEEeCCCCchhhHHHHHHHHHh------------CCCEEEEEeccceeecCccchhhhheeeeecccccCCCCC-
Q 032954 7 ICAKRVVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH- 73 (130)
Q Consensus 7 ~~r~w~viDA~~~~lGRLAs~VAk~L~------------~Gd~VvViNaeki~~tG~k~~~k~~y~~~l~~~~~~~pg~- 73 (130)
++|+|+||||+||+||||||+||++|+ |||+|||||||+|++||+||++|.||+ ||||||+
T Consensus 37 ~~r~W~vIDA~g~~LGRLAs~IAk~L~GKhKP~ytP~~D~GD~VVVINAeki~lTG~K~~~K~yy~------htgypGGl 110 (174)
T 2zjr_G 37 DEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTR------YTGYQGGL 110 (174)
T ss_dssp SCCCEEEEECTTSBHHHHHHHHHHHHHCSSCSSCCSSSCCCCEEEEECCTTCBCSSCSSSSCEEEE------CCSSCSSC
T ss_pred ccccEEEEeCCCCchHHHHHHHHHHHhccCCCccCccccCCCEEEEEeCeeeEeccchhhceEEEE------ecCcCCCc
Confidence 899999999999999999999999999 999999999999999999999999997 8999987
Q ss_pred -----CCccccCchHhHHHHHHccCCCCChhHHHHhccceeecCCCCCccccCccccCc
Q 032954 74 -----GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPD 127 (130)
Q Consensus 74 -----~~~~~r~P~~i~~~aVrgMLPkkn~~gr~~l~rLkvy~g~~~p~~~q~~~~~p~ 127 (130)
+++++++|++||++||+||||+ |++|+.+|+||+||+|++|||++|+|++++-
T Consensus 111 k~~~~~~~~~r~P~~Ii~~AVrGMLPk-n~lGr~~l~rLkVy~G~~hph~aqkp~~l~~ 168 (174)
T 2zjr_G 111 KTETAREALSKHPERVIEHAVFGMLPK-GRQGRAMHTRLKVYAGETHPHSAQKPQVLKT 168 (174)
T ss_dssp CEEEESTTTTSCHHHHHHHHHGGGSCC-SHHHHHHHTTCEECSCSTGGGGSCCSCCCCC
T ss_pred ccccHHHHhhcChHHHHHHHHHhcCCC-ChhHHHHHhCeEEECCCCCChhccCCeEEec
Confidence 8999999999999999999997 9999999999999999999999999998763
No 12
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=100.00 E-value=7.1e-51 Score=306.75 Aligned_cols=114 Identities=27% Similarity=0.413 Sum_probs=109.4
Q ss_pred ceeeeEEEEeCCCCchhhHHHHHHHHHh------------CCCEEEEEeccceeecCccchhhhheeeeecccccCCCCC
Q 032954 6 GICAKRVVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH 73 (130)
Q Consensus 6 ~~~r~w~viDA~~~~lGRLAs~VAk~L~------------~Gd~VvViNaeki~~tG~k~~~k~~y~~~l~~~~~~~pg~ 73 (130)
+++|+|+||||+||+||||||+||++|+ |||+|||||||+|++||+||++|.||+ ||||||+
T Consensus 31 ~~~r~W~VIDA~g~~LGRLAs~VAk~L~GKhKP~ytP~~D~GD~VVVINaekI~iTG~K~~~K~yy~------htgypGg 104 (163)
T 3f1f_N 31 QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTR------YSGYPGG 104 (163)
T ss_dssp CCCCCBCBBCCTTCBHHHHHHHHHHHHSCTTSTTCCTTTCCCCBCEECCGGGCBCSTTHHHHCEECC------BCSSTTC
T ss_pred cccCcEEEEeCCCCchHHHHHHHHHHHhcCCCCccCCcccCCCEEEEEeCcccccCCchhhheeeEE------ecCcCCc
Confidence 7899999999999999999999999998 999999999999999999999999996 9999997
Q ss_pred ------CCccccCchHhHHHHHHccCCCCChhHHHHhccceeecCCCCCccccCccccC
Q 032954 74 ------GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIP 126 (130)
Q Consensus 74 ------~~~~~r~P~~i~~~aVrgMLPkkn~~gr~~l~rLkvy~g~~~p~~~q~~~~~p 126 (130)
+++++++|++||++||+||||+ |++|+.+|+||+||+|++|||++|+|.++.
T Consensus 105 lk~~t~~~~~~r~P~~Ii~~AVrGMLPk-n~lGr~~l~rLkVY~G~~hPh~aQ~P~~l~ 162 (163)
T 3f1f_N 105 LKKIPLEKMLATHPERVLEHAVKGMLPK-GPLGRRLFKRLKVYAGPDHPHQAQRPEKLE 162 (163)
T ss_dssp BCCEEHHHHHHSSCHHHHHHHHHTTSCS-SHHHHHHHHTCEECSSSCCCCCSCCCBCC-
T ss_pred ceeeehHHhhhcCHHHHHHHHHHhcCCC-ChhHHHHHhCCEEECCCCCCcccCCCeecC
Confidence 7789999999999999999997 899999999999999999999999998764
No 13
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=3e-49 Score=313.30 Aligned_cols=121 Identities=29% Similarity=0.432 Sum_probs=104.1
Q ss_pred CCCc---eeeeEEEEeCCCCchhhHHHHHHHHHh------------CCCEEEEEeccceeecCccchhhhheeeeecccc
Q 032954 3 SGSG---ICAKRVVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRM 67 (130)
Q Consensus 3 ~~~~---~~r~w~viDA~~~~lGRLAs~VAk~L~------------~Gd~VvViNaeki~~tG~k~~~k~~y~~~l~~~~ 67 (130)
++.+ ++|+|+||||+||+||||||+||++|+ |||+|||||||+|++||+||++|.||+ |
T Consensus 103 k~~~v~~~~r~W~VIDA~g~vLGRLAS~IAk~LrGKhKP~ytP~vD~GD~VVVINAeKI~lTG~K~~~K~Y~r------H 176 (250)
T 3bbo_L 103 KSADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRR------H 176 (250)
T ss_dssp ---------CCCCEECCSSCCSSTTHHHHTTTTTTTTTTCCCTTSCCSCCCEESCCSSCCCCSGGGGTCCCBC------C
T ss_pred ChhhcccccceEEEEeCCCCchHHHHHHHHHHHccCCCCccCccccCCCEEEEEecceEEecCChhhceEEEE------e
Confidence 4555 699999999999999999999999998 999999999999999999999999885 9
Q ss_pred cCCCCC------CCccccCchHhHHHHHHccCCCCChhHHHHhccceeecCCCCCccccCccccCcCcC
Q 032954 68 NTKPSH------GPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDALK 130 (130)
Q Consensus 68 ~~~pg~------~~~~~r~P~~i~~~aVrgMLPkkn~~gr~~l~rLkvy~g~~~p~~~q~~~~~p~a~~ 130 (130)
+||||+ +++++++|++||++||+||||+ |++|+.+|+||+||+|.+|||++|+|+++|.|++
T Consensus 177 sgyPGGlK~~t~~~l~~r~PerIi~kAVrGMLPk-n~lGr~~lkrLkVY~G~~HPh~aQkp~~l~ia~k 244 (250)
T 3bbo_L 177 SGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPK-GRLGRYLFNHLKVYKGAEHPHQAQQPIDLPLRDK 244 (250)
T ss_dssp CSSSSCCCBCCHHHHTTSCTTHHHHHHHHTTSCS-SSSHHHHHTTCCCCSSSCCSCTTSCC--------
T ss_pred cCcCCCcccccHHHhhhcChHHHHHHHHHhcCCC-CchHHHHHhCcEEeCCCCCCHHHcCCeeechhhh
Confidence 999996 6899999999999999999997 8999999999999999999999999999998864
No 14
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=75.74 E-value=1.7 Score=29.81 Aligned_cols=23 Identities=17% Similarity=0.068 Sum_probs=20.1
Q ss_pred chhhHHHHHHHHHhCCCEEEEEe
Q 032954 20 MLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 20 ~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
..|++|..++++|..||.|.|--
T Consensus 59 ~wgk~AE~~~~yl~KG~~V~VeG 81 (108)
T 3koj_A 59 GWGAVAQELQDRCRLNDEVVLEG 81 (108)
T ss_dssp EETHHHHHHHHHCCTTCEEEEEE
T ss_pred EEhHHHHHHHHhCCCCCEEEEEE
Confidence 35899999999999999998864
No 15
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=72.37 E-value=4.8 Score=29.32 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=29.5
Q ss_pred CceeeeEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEe
Q 032954 5 SGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 5 ~~~~r~w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
.+...+|+-|=+-| |.||..|.++|..|+.|+|.-
T Consensus 81 ge~~tdf~~V~vfG---g~lAE~i~~ylkkG~rVlVeG 115 (148)
T 3stb_C 81 GDPDKDFHTVRVFD---SDYSSRVKEQLRDGEWFLVTG 115 (148)
T ss_dssp TSCSEEEEEEEECS---HHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCccceEEEEEEC---ChHHHHHHHHhcCCCEEEEEE
Confidence 34456788888777 899999999999999998865
No 16
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=65.07 E-value=4 Score=28.50 Aligned_cols=33 Identities=24% Similarity=0.127 Sum_probs=24.7
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEeccce
Q 032954 10 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEI 46 (130)
Q Consensus 10 ~w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViNaeki 46 (130)
.|+=|-| .|++|..++++|..||.|.|.--=+.
T Consensus 63 ~w~~v~~----wg~~Ae~~~~~l~KG~~V~VeGrL~~ 95 (128)
T 4dam_A 63 NFFTVWA----NRQLATNASGSLAVGDPVVVQGRLKV 95 (128)
T ss_dssp EEEEEEE----EHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred EEEEEEE----EcHHHHHHHHhcCCCCEEEEEEEEEE
Confidence 4554443 47899999999999999998754333
No 17
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=62.99 E-value=4.8 Score=27.16 Aligned_cols=23 Identities=17% Similarity=0.010 Sum_probs=20.0
Q ss_pred chhhHHHHHHHHHhCCCEEEEEe
Q 032954 20 MLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 20 ~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
..|++|..++++|..||.|.|.-
T Consensus 56 ~wg~~Ae~~~~~l~KG~~V~V~G 78 (116)
T 3vdy_A 56 LWRKTAENTALYCQKGSLVGVSG 78 (116)
T ss_dssp EEHHHHHHHHHHCCTTCEEEEEE
T ss_pred EECHHHHHHHHhCCCCCEEEEEE
Confidence 35899999999999999988864
No 18
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=59.31 E-value=5.4 Score=27.28 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=19.6
Q ss_pred hh-hHHHHHHHHHhCCCEEEEEe
Q 032954 21 LG-RLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 21 lG-RLAs~VAk~L~~Gd~VvViN 42 (130)
.| ++|..++++|..|+.|.|.-
T Consensus 61 wg~~~Ae~~~~~l~KG~~V~V~G 83 (124)
T 3ulp_A 61 YDQNIVDLIDKYLRKGRRVYVQG 83 (124)
T ss_dssp CCHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEchHHHHHHhhcCCCCEEEEEE
Confidence 57 89999999999999998864
No 19
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=58.99 E-value=6 Score=27.60 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.7
Q ss_pred chhhHHHHHHHHHhCCCEEEEEe
Q 032954 20 MLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 20 ~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
..|++|..++++|..||.|.|.-
T Consensus 55 ~wg~~Ae~~~~~l~KG~~V~V~G 77 (134)
T 2vw9_A 55 LFGRTAEIANQYLSKGSSVLIEG 77 (134)
T ss_dssp EEHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEcHHHHHHHHhCCCCCEEEEEE
Confidence 35899999999999999988864
No 20
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=58.14 E-value=6.2 Score=28.36 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHhCCCEEEEEe
Q 032954 21 LGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 21 lGRLAs~VAk~L~~Gd~VvViN 42 (130)
.|++|..++++|..|+.|.|.-
T Consensus 70 wg~~Ae~~~~~l~KG~~V~VeG 91 (153)
T 1z9f_A 70 FGRLAEFARTYLTKGRLVLVEG 91 (153)
T ss_dssp EHHHHHHHHHHCCTTCEEEEEE
T ss_pred ECHHHHHHHhhCCCCCEEEEEE
Confidence 5889999999999999998874
No 21
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=56.11 E-value=6.9 Score=28.45 Aligned_cols=23 Identities=26% Similarity=0.292 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHhCCCEEEEEec
Q 032954 21 LGRLASIVAKELLNGQKVVAVRC 43 (130)
Q Consensus 21 lGRLAs~VAk~L~~Gd~VvViNa 43 (130)
.|++|..++++|..|+.|+|.--
T Consensus 60 wg~~Ae~~~~~l~KG~~V~VeGr 82 (168)
T 3afp_A 60 WREAAENVAESLTRGARVIVTGR 82 (168)
T ss_dssp EHHHHHHHHHHCCTTCEEEEEEE
T ss_pred ehHHHHHHHHhCCCCCEEEEEEE
Confidence 48999999999999999998743
No 22
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=55.43 E-value=6.7 Score=28.86 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=19.6
Q ss_pred chhhHHHHHHHHHhCCCEEEEEe
Q 032954 20 MLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 20 ~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
+.|++|..++++|..|+.|.|.-
T Consensus 60 ~wg~~Ae~~~~~l~KG~~V~VeG 82 (178)
T 1eqq_A 60 LFGKLAEVASEYLRKGSQVYIEG 82 (178)
T ss_dssp ECHHHHHHHHHHCCTTCEEEECC
T ss_pred EccHHHHHHHHhcCCCCEEEEEE
Confidence 45789999999999999988853
No 23
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=54.08 E-value=7.8 Score=27.37 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHhCCCEEEEEe
Q 032954 21 LGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 21 lGRLAs~VAk~L~~Gd~VvViN 42 (130)
.|++|..++++|..||.|.|.-
T Consensus 60 wg~~Ae~~~~~l~KG~~V~V~G 81 (145)
T 1qvc_A 60 FGKLAEVASEYLRKGSQVYIEG 81 (145)
T ss_dssp ETHHHHHHHHHCCTTCEEEEEE
T ss_pred ehHHHHHHHHhcCCCCEEEEEE
Confidence 5689999999999999998864
No 24
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=52.61 E-value=7.6 Score=27.95 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHhCCCEEEEEec
Q 032954 21 LGRLASIVAKELLNGQKVVAVRC 43 (130)
Q Consensus 21 lGRLAs~VAk~L~~Gd~VvViNa 43 (130)
.|++|..++++|..|+.|.|.--
T Consensus 63 wg~~Ae~~~~~l~KG~~V~VeG~ 85 (158)
T 3tqy_A 63 FNRLAEIVGEYLRKGSKIYIEGS 85 (158)
T ss_dssp ETHHHHHHHHHCCTTCEEEEEEE
T ss_pred EhHHHHHHHhhcCCCCEEEEEEE
Confidence 67899999999999999988653
No 25
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=52.43 E-value=7.7 Score=26.84 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=18.8
Q ss_pred hh-hHHHHHHHHHhCCCEEEEEe
Q 032954 21 LG-RLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 21 lG-RLAs~VAk~L~~Gd~VvViN 42 (130)
.| ++|..++++|..|+.|.|.-
T Consensus 74 wg~~~Ae~~~~~l~KG~~V~V~G 96 (132)
T 3ull_A 74 FRPGLRDVAYQYVKKGSRIYLEG 96 (132)
T ss_dssp CSTTHHHHHHHHCCTTCEEEEEE
T ss_pred EchHHHHHHHhhCCCCCEEEEEE
Confidence 45 69999999999999998864
No 26
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=49.81 E-value=8.6 Score=27.62 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=23.1
Q ss_pred eeEEEEeCCCCchhhH-HHHHHHHHhCCCEEEEEe
Q 032954 9 AKRVVVDARHHMLGRL-ASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 9 r~w~viDA~~~~lGRL-As~VAk~L~~Gd~VvViN 42 (130)
-.||=|-+ .|++ |..++++|..|+.|.|.-
T Consensus 51 t~w~~vv~----wgk~lAe~~~~yl~KG~~V~VeG 81 (148)
T 3k7u_C 51 KDHHTIRC----FGELFSAEVKQKVKEGNVVCVNG 81 (148)
T ss_dssp EEEEEEEE----ESHHHHHHHHHHCCTTCEEEEEE
T ss_pred cEEEEEEE----ECcHHHHHHHhhCCCCCEEEEEE
Confidence 34555544 4676 999999999999999875
No 27
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=46.11 E-value=12 Score=28.29 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHhCCCEEEEEe
Q 032954 21 LGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 21 lGRLAs~VAk~L~~Gd~VvViN 42 (130)
.|+||..++++|..|+.|+|.=
T Consensus 60 wgklAE~v~~~L~KG~~V~VeG 81 (199)
T 3eiv_A 60 WRQAAENVAESLQRGMRVIVQG 81 (199)
T ss_dssp ETHHHHHHHHHCCTTCEEEEEE
T ss_pred EhHHHHHHHHhcCCCCEEEEEE
Confidence 5789999999999999998864
No 28
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=45.68 E-value=12 Score=27.36 Aligned_cols=29 Identities=24% Similarity=0.190 Sum_probs=22.6
Q ss_pred eEEEEeCCCCchhh-HHHHHHHHHhCCCEEEEEe
Q 032954 10 KRVVVDARHHMLGR-LASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 10 ~w~viDA~~~~lGR-LAs~VAk~L~~Gd~VvViN 42 (130)
.|+=|-| .|+ +|..++++|..|+.|.|.-
T Consensus 71 ~~i~vv~----wg~~lAe~~~~~l~KG~~V~VeG 100 (169)
T 3lgj_A 71 EWHSVVV----FNPHFAKIALQYLHKGSKVYIEG 100 (169)
T ss_dssp EEEEEEE----CCHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEEEEEE----eCHHHHHHHHHhCCCCCEEEEEE
Confidence 4554444 467 9999999999999998864
No 29
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=43.48 E-value=12 Score=27.45 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=23.6
Q ss_pred eeEEEEeCCCCchhhH-HHHHHHHHhCCCEEEEEe
Q 032954 9 AKRVVVDARHHMLGRL-ASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 9 r~w~viDA~~~~lGRL-As~VAk~L~~Gd~VvViN 42 (130)
-.||=|-+ .|++ |..++++|..|+.|.|--
T Consensus 67 Tdw~~Vv~----wgk~lAE~~~~yL~KGs~V~VeG 97 (164)
T 3k81_C 67 KDHHTIRC----FGELFSAEVKQKVKEGNVVCVNG 97 (164)
T ss_dssp CEEEEEEE----CCHHHHHHHHHHCCTTCEEEECC
T ss_pred eEEEEEEE----ECCHHHHHHHhhcCCCCEEEEEE
Confidence 45766654 4678 999999999999988854
No 30
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=41.58 E-value=6.8 Score=26.03 Aligned_cols=23 Identities=9% Similarity=0.248 Sum_probs=20.0
Q ss_pred chhhHHHHHHHHHhCCCEEEEEe
Q 032954 20 MLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 20 ~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
..|++|..++++|..|+.|.|--
T Consensus 54 ~~g~~Ae~~~~~l~KG~~V~V~G 76 (104)
T 1txy_A 54 VSGHENQAITHSITVGSRITVQG 76 (104)
T ss_dssp EESSTTHHHHTTCCTTCEEEEEE
T ss_pred EEhHHHHHHHhhCCCCCEEEEEE
Confidence 56899999999999999988764
No 31
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=38.95 E-value=16 Score=25.66 Aligned_cols=15 Identities=7% Similarity=0.076 Sum_probs=12.3
Q ss_pred ceeeeEEEEeCCCCc
Q 032954 6 GICAKRVVVDARHHM 20 (130)
Q Consensus 6 ~~~r~w~viDA~~~~ 20 (130)
-.+|.|.|.||.|++
T Consensus 47 L~sRhW~Itd~~g~~ 61 (127)
T 2f1e_A 47 LVARHWQITDGNGRT 61 (127)
T ss_dssp EEEEEEEEEETTSCE
T ss_pred EEeceEEEEeCCCCE
Confidence 357999999999873
No 32
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=37.86 E-value=17 Score=25.46 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=12.3
Q ss_pred ceeeeEEEEeCCCCc
Q 032954 6 GICAKRVVVDARHHM 20 (130)
Q Consensus 6 ~~~r~w~viDA~~~~ 20 (130)
-.+|.|.|.||.|++
T Consensus 46 L~sRhW~Itd~~g~~ 60 (126)
T 1xvs_A 46 LMSRRWLITDADGKQ 60 (126)
T ss_dssp EEEEEEEEEETTCCE
T ss_pred EEecEEEEEeCCCCE
Confidence 357999999999873
No 33
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=35.19 E-value=19 Score=25.48 Aligned_cols=15 Identities=13% Similarity=0.069 Sum_probs=12.3
Q ss_pred ceeeeEEEEeCCCCc
Q 032954 6 GICAKRVVVDARHHM 20 (130)
Q Consensus 6 ~~~r~w~viDA~~~~ 20 (130)
-.+|.|.|.||.|++
T Consensus 46 L~sRhW~Itd~~g~~ 60 (134)
T 1tza_A 46 LETRHWIITDANGKT 60 (134)
T ss_dssp EEEEEEEEEETTSCE
T ss_pred EEecEEEEEeCCCCE
Confidence 357999999999773
No 34
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=33.23 E-value=20 Score=25.58 Aligned_cols=15 Identities=13% Similarity=0.304 Sum_probs=12.2
Q ss_pred ceeeeEEEEeCCCCc
Q 032954 6 GICAKRVVVDARHHM 20 (130)
Q Consensus 6 ~~~r~w~viDA~~~~ 20 (130)
-.+|.|.|.||.|++
T Consensus 51 L~sRhW~ItD~~G~~ 65 (139)
T 1xq4_A 51 VISRHWIITDGEERV 65 (139)
T ss_dssp EEEEEEEEECTTSCE
T ss_pred EEecEEEEEeCCCCE
Confidence 357999999999863
No 35
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=30.31 E-value=28 Score=27.22 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=26.8
Q ss_pred chh-hHHHHHHHHHhCCCEEEEEeccceeecCccchhhhhee
Q 032954 20 MLG-RLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYM 60 (130)
Q Consensus 20 ~lG-RLAs~VAk~L~~Gd~VvViNaeki~~tG~k~~~k~~y~ 60 (130)
..| ++|..++++|..|+.|.|---=+. .-++..+|.|+.
T Consensus 78 ~wg~k~AE~~~~yl~kG~~V~VeGrL~~--~~~~dG~kr~~~ 117 (257)
T 4dni_A 78 VFDSDYSSRVKEQLRDGEWFLVTGRLRM--VPQYDGSMRKYY 117 (257)
T ss_dssp ECSHHHHHHHHHHCCTTCEEEEEEEEEE--EEEECSSSSSEE
T ss_pred EECCHHHHHHHHhccCCCEEEEEEEEEE--eECCCCCcEEEE
Confidence 469 999999999999999888643333 223344555444
No 36
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=29.25 E-value=28 Score=26.06 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=18.5
Q ss_pred hhh-HHHHHHHHHhCCCEEEEEe
Q 032954 21 LGR-LASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 21 lGR-LAs~VAk~L~~Gd~VvViN 42 (130)
.|+ +|..++++|..|+.|.|.-
T Consensus 81 wgk~lAe~~~~yL~KGs~V~VeG 103 (193)
T 3pgz_A 81 FNENLVKVVEQYLKKGSKIYIEG 103 (193)
T ss_dssp CCHHHHHHHHHHCCTTCEEEEEE
T ss_pred ECHHHHHHHHhhcCCCCEEEEEE
Confidence 464 9999999999999988864
No 37
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=28.35 E-value=44 Score=22.23 Aligned_cols=35 Identities=26% Similarity=0.569 Sum_probs=25.1
Q ss_pred CceeeeEEEEeCCCCchhhHHHHHHHHHh-CCCEEEEEecc
Q 032954 5 SGICAKRVVVDARHHMLGRLASIVAKELL-NGQKVVAVRCE 44 (130)
Q Consensus 5 ~~~~r~w~viDA~~~~lGRLAs~VAk~L~-~Gd~VvViNae 44 (130)
......++|+= .|+++..+|+.|. .|..|++|..+
T Consensus 4 ~~~~~~viIiG-----~G~~G~~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 4 VDICNHALLVG-----YGRVGSLLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp CCCCSCEEEEC-----CSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred ccCCCCEEEEC-----cCHHHHHHHHHHHHCCCCEEEEECC
Confidence 33444555553 4999999999886 68888888754
No 38
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}
Probab=26.36 E-value=79 Score=24.20 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=25.7
Q ss_pred eeeEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEe
Q 032954 8 CAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 8 ~r~w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
..++++|-+.| .+|.+|.++|+.+..|-+|+++-
T Consensus 170 ~g~~VlV~GaG-~vG~~aiqlak~~~~Ga~Vi~~~ 203 (344)
T 2h6e_A 170 AEPVVIVNGIG-GLAVYTIQILKALMKNITIVGIS 203 (344)
T ss_dssp SSCEEEEECCS-HHHHHHHHHHHHHCTTCEEEEEC
T ss_pred CCCEEEEECCC-HHHHHHHHHHHHhcCCCEEEEEe
Confidence 45677777776 99999999999764466777664
No 39
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=25.88 E-value=21 Score=27.36 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=19.3
Q ss_pred chhhHHHHHHHHHhCCCEEEEEe
Q 032954 20 MLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 20 ~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
..|++|..++++|..|+.|.|.-
T Consensus 58 ~~g~~Ae~~~~~l~KG~~V~V~G 80 (264)
T 2fxq_A 58 LLGRQAEMWGDLLEKGQLIFVEG 80 (264)
T ss_dssp EETHHHHHHTTTCCTTCEEEEEE
T ss_pred EEchHHHHHHHhCCCCCEEEEEE
Confidence 34789999999999999888764
No 40
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=25.63 E-value=46 Score=22.31 Aligned_cols=30 Identities=23% Similarity=0.168 Sum_probs=22.4
Q ss_pred eeEEEEeCCCCchhhHHHHHHHHHh-CCCEEEEEec
Q 032954 9 AKRVVVDARHHMLGRLASIVAKELL-NGQKVVAVRC 43 (130)
Q Consensus 9 r~w~viDA~~~~lGRLAs~VAk~L~-~Gd~VvViNa 43 (130)
++++|+ | .|++++.+|..|. .|..|++|.-
T Consensus 4 ~~vlI~---G--~G~vG~~la~~L~~~g~~V~vid~ 34 (153)
T 1id1_A 4 DHFIVC---G--HSILAINTILQLNQRGQNVTVISN 34 (153)
T ss_dssp SCEEEE---C--CSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CcEEEE---C--CCHHHHHHHHHHHHCCCCEEEEEC
Confidence 345666 4 3899999999886 6888888854
No 41
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=22.91 E-value=11 Score=26.66 Aligned_cols=23 Identities=9% Similarity=0.248 Sum_probs=19.8
Q ss_pred chhhHHHHHHHHHhCCCEEEEEe
Q 032954 20 MLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 20 ~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
..|++|..++++|..|+.|.|--
T Consensus 71 ~wGk~AE~~~~yl~KGs~V~VeG 93 (134)
T 1v1q_A 71 VSGHENQAITHSITVGSRITVQG 93 (134)
T ss_dssp EESTGGGGGGTTCCTTCEEEEEE
T ss_pred EEhHHHHHHHHhcCCCCEEEEEE
Confidence 46899999999999999988864
No 42
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=22.59 E-value=58 Score=21.30 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHh-CCCEEEEEecc
Q 032954 22 GRLASIVAKELL-NGQKVVAVRCE 44 (130)
Q Consensus 22 GRLAs~VAk~L~-~Gd~VvViNae 44 (130)
|++.+.+|..|. .|..|+++.-+
T Consensus 15 G~iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 15 EAAGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CHHHHHHHHHHHHCCCeEEEEECC
Confidence 888889998886 68888888643
No 43
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=22.14 E-value=32 Score=26.28 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHhCCCEEEEEe
Q 032954 21 LGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 21 lGRLAs~VAk~L~~Gd~VvViN 42 (130)
.|++|..++ +|..|+.|.|.-
T Consensus 179 wg~~Ae~~~-~l~KG~~V~V~G 199 (264)
T 2fxq_A 179 WRELAEWAS-ELRKGDGLLVIG 199 (264)
T ss_dssp EHHHHHHHT-TCCTTCEEEEEE
T ss_pred EChHHHHhh-hcCCCCEEEEEE
Confidence 489999999 999999998864
No 44
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=21.95 E-value=69 Score=22.78 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHh-CCCEEEEEec
Q 032954 21 LGRLASIVAKELL-NGQKVVAVRC 43 (130)
Q Consensus 21 lGRLAs~VAk~L~-~Gd~VvViNa 43 (130)
.|++++.+|+.|. .|..|+++..
T Consensus 8 ~G~~G~~la~~L~~~g~~v~vid~ 31 (218)
T 3l4b_C 8 GETTAYYLARSMLSRKYGVVIINK 31 (218)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCHHHHHHHHHHHhCCCeEEEEEC
Confidence 4999999999886 6888888873
No 45
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=21.57 E-value=1.1e+02 Score=23.44 Aligned_cols=31 Identities=26% Similarity=0.253 Sum_probs=23.8
Q ss_pred eeEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEe
Q 032954 9 AKRVVVDARHHMLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 9 r~w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
.++++|-+.| .+|.+|.++|+.+ |-+|+++-
T Consensus 177 g~~VlV~GaG-~vG~~a~qla~~~--Ga~Vi~~~ 207 (348)
T 3two_A 177 GTKVGVAGFG-GLGSMAVKYAVAM--GAEVSVFA 207 (348)
T ss_dssp TCEEEEESCS-HHHHHHHHHHHHT--TCEEEEEC
T ss_pred CCEEEEECCc-HHHHHHHHHHHHC--CCeEEEEe
Confidence 4677887875 8999999999954 66777753
No 46
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=21.55 E-value=1.8e+02 Score=19.59 Aligned_cols=36 Identities=25% Similarity=0.275 Sum_probs=28.4
Q ss_pred eeeEEEEeCCCCchhhHHHHHHHHHh-CCCEEEEEecc
Q 032954 8 CAKRVVVDARHHMLGRLASIVAKELL-NGQKVVAVRCE 44 (130)
Q Consensus 8 ~r~w~viDA~~~~lGRLAs~VAk~L~-~Gd~VvViNae 44 (130)
.+.+-||=|++. .|+++..+++.|+ .|..|.-||-+
T Consensus 13 p~~vaVvGas~~-~g~~G~~~~~~l~~~G~~v~~vnp~ 49 (140)
T 1iuk_A 13 AKTIAVLGAHKD-PSRPAHYVPRYLREQGYRVLPVNPR 49 (140)
T ss_dssp CCEEEEETCCSS-TTSHHHHHHHHHHHTTCEEEEECGG
T ss_pred CCEEEEECCCCC-CCChHHHHHHHHHHCCCEEEEeCCC
Confidence 456778876654 4899999999887 68889889987
No 47
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=21.14 E-value=2e+02 Score=19.42 Aligned_cols=43 Identities=26% Similarity=0.280 Sum_probs=31.8
Q ss_pred eeeEEEEeCCCCchhhHHHHHHHHHh-CCCEEEEEeccceeecCc
Q 032954 8 CAKRVVVDARHHMLGRLASIVAKELL-NGQKVVAVRCEEICMSGG 51 (130)
Q Consensus 8 ~r~w~viDA~~~~lGRLAs~VAk~L~-~Gd~VvViNaeki~~tG~ 51 (130)
.+++-||=|++ -.|+++..+++.|+ .|..|..+|-+.-.+-|-
T Consensus 14 p~~IavIGaS~-~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i~G~ 57 (138)
T 1y81_A 14 FRKIALVGASK-NPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGL 57 (138)
T ss_dssp CCEEEEETCCS-CTTSHHHHHHHHHHHTTCEEEEECTTCSEETTE
T ss_pred CCeEEEEeecC-CCCCHHHHHHHHHHHCCCEEEEeCCCCCeECCe
Confidence 45667776665 46999999999887 688899999876555443
No 48
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=21.03 E-value=1.4e+02 Score=22.74 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=24.0
Q ss_pred eeEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEe
Q 032954 9 AKRVVVDARHHMLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 9 r~w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
.++++|-+.| .+|.+|.++|+.+ |-+|+++-
T Consensus 167 g~~VlV~GaG-~vG~~a~qla~~~--Ga~Vi~~~ 197 (340)
T 3s2e_A 167 GQWVVISGIG-GLGHVAVQYARAM--GLRVAAVD 197 (340)
T ss_dssp TSEEEEECCS-TTHHHHHHHHHHT--TCEEEEEE
T ss_pred CCEEEEECCC-HHHHHHHHHHHHC--CCeEEEEe
Confidence 4677887776 5899999999954 76877763
No 49
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=20.42 E-value=90 Score=19.80 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=21.2
Q ss_pred eEEEEeCCCCchhhHHHHHHHHHh-CCCEEEEEec
Q 032954 10 KRVVVDARHHMLGRLASIVAKELL-NGQKVVAVRC 43 (130)
Q Consensus 10 ~w~viDA~~~~lGRLAs~VAk~L~-~Gd~VvViNa 43 (130)
+..|+ | .|++++.+|..|. .|..|+++.-
T Consensus 6 ~i~Ii---G--~G~iG~~~a~~L~~~g~~v~~~d~ 35 (140)
T 1lss_A 6 YIIIA---G--IGRVGYTLAKSLSEKGHDIVLIDI 35 (140)
T ss_dssp EEEEE---C--CSHHHHHHHHHHHHTTCEEEEEES
T ss_pred EEEEE---C--CCHHHHHHHHHHHhCCCeEEEEEC
Confidence 45666 3 2888888888876 6888888864
No 50
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=20.38 E-value=40 Score=26.56 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=17.5
Q ss_pred chhhHHHHHHHH-HhCCCEEEEE
Q 032954 20 MLGRLASIVAKE-LLNGQKVVAV 41 (130)
Q Consensus 20 ~lGRLAs~VAk~-L~~Gd~VvVi 41 (130)
+.|++|..++++ |..|+.|.|.
T Consensus 58 ~~g~~Ae~~~~~~l~KG~~V~Ve 80 (301)
T 1se8_A 58 ILGKPAEWQAERNLKGGDAVVVE 80 (301)
T ss_dssp EESHHHHHHHHTCCCTTCEEEEE
T ss_pred EEcHHHHHHHhhCCCCCCEEEEE
Confidence 347899999999 9878766664
No 51
>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} SCOP: c.131.1.1
Probab=20.36 E-value=1.8e+02 Score=19.48 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=18.3
Q ss_pred eeeEEEEeCC-CCchhhHHHHHHHHH
Q 032954 8 CAKRVVVDAR-HHMLGRLASIVAKEL 32 (130)
Q Consensus 8 ~r~w~viDA~-~~~lGRLAs~VAk~L 32 (130)
.+..+||..+ +...|.+|+++|..-
T Consensus 3 ~K~vivvr~dL~m~~GKiaAQ~~HAa 28 (117)
T 1q7s_A 3 YKMILVVRNDLKMGKGKVAAQCSHAA 28 (117)
T ss_dssp EEEEEEEEGGGCCCHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCcCHhHHHHHHHHHH
Confidence 3556677654 578999999988754
No 52
>1tul_A TLP20; telokin-like protein; 2.20A {Autographa californica nucleopolyhedroorganism_taxid} SCOP: b.85.5.1
Probab=20.22 E-value=46 Score=22.88 Aligned_cols=12 Identities=17% Similarity=0.028 Sum_probs=10.3
Q ss_pred CCCEEEEEeccc
Q 032954 34 NGQKVVAVRCEE 45 (130)
Q Consensus 34 ~Gd~VvViNaek 45 (130)
|||++|+.|+-.
T Consensus 66 cgdy~V~~N~~~ 77 (108)
T 1tul_A 66 CGNYGVLCNLVQ 77 (108)
T ss_dssp SSSEEEEEECCS
T ss_pred cCCEEEEEEccc
Confidence 899999999844
No 53
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=20.08 E-value=1.2e+02 Score=23.24 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=23.5
Q ss_pred eeEEEEeCCCCchhhHHHHHHHHHhCCCEEEEEe
Q 032954 9 AKRVVVDARHHMLGRLASIVAKELLNGQKVVAVR 42 (130)
Q Consensus 9 r~w~viDA~~~~lGRLAs~VAk~L~~Gd~VvViN 42 (130)
.++++|-+.| .+|.+|.++|+.+ |-.|+++-
T Consensus 169 g~~VlV~GaG-~vG~~a~qla~~~--Ga~Vi~~~ 199 (352)
T 1e3j_A 169 GTTVLVIGAG-PIGLVSVLAAKAY--GAFVVCTA 199 (352)
T ss_dssp TCEEEEECCS-HHHHHHHHHHHHT--TCEEEEEE
T ss_pred CCEEEEECCC-HHHHHHHHHHHHc--CCEEEEEc
Confidence 3577888865 7999999999953 76776663
Done!