RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 032954
(130 letters)
>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 142
Score = 113 bits (283), Expect = 7e-34
Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 6/121 (4%)
Query: 10 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNT 69
V+VDAR ++GR+AS VA++ L+G+ V V E ++G ++ + + KR++
Sbjct: 5 ADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITG----REEQIVEKYEKRVDI 60
Query: 70 KPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDAL 129
+G + + P IF RT+RGM+PHK +RG A ++ Y G PYD+ ++ +L
Sbjct: 61 GNDNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLG--NPYDEDGEVLDGTSL 118
Query: 130 K 130
Sbjct: 119 D 119
>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 142
Score = 108 bits (272), Expect = 3e-32
Identities = 45/116 (38%), Positives = 64/116 (55%)
Query: 13 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPS 72
+++A +LGRLAS VAK LL G++VV V E+ ++G KY + R T P
Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
Query: 73 HGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDKVKRMVIPDA 128
GP + + +I RT+RGM+P KT RG A RLK Y G+P + + I +A
Sbjct: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEA 118
>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli
[TaxId: 562]}
Length = 140
Score = 83.5 bits (206), Expect = 3e-22
Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 13/126 (10%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQK------------VVAVRCEEICMSGGLVRQKMKY 59
VVDA LGRLA+ +A+ L K ++ + +++ ++G K+ Y
Sbjct: 16 YVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYY 75
Query: 60 MRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDK 119
+ + + R P ++ V+GM+P K G A +LK Y G +
Sbjct: 76 HHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLP-KGPLGRAMFRKLKVYAGNEHNHAA 134
Query: 120 VKRMVI 125
+ V+
Sbjct: 135 QQPQVL 140
>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus
thermophilus [TaxId: 274]}
Length = 139
Score = 83.2 bits (205), Expect = 3e-22
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 13/126 (10%)
Query: 12 VVVDARHHMLGRLASIVAKELLNGQK------------VVAVRCEEICMSGGLVRQKMKY 59
V++DA LGRLA+ +A L + VV V ++I ++G + QK+
Sbjct: 14 VLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYT 73
Query: 60 MRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDK 119
K + P ++ V+GM+P K G RLK Y G P+
Sbjct: 74 RYSGYPGGLKKIPLEKMLATHPERVLEHAVKGMLP-KGPLGRRLFKRLKVYAGPDHPHQA 132
Query: 120 VKRMVI 125
+ +
Sbjct: 133 QRPEKL 138
>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 142
Score = 82.7 bits (204), Expect = 5e-22
Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 13/126 (10%)
Query: 12 VVVDARHHMLGRLASIVAKELL------------NGQKVVAVRCEEICMSGGLVRQKMKY 59
VVVDA LGRLA+++A + G VV + ++ ++G + K+
Sbjct: 13 VVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYT 72
Query: 60 MRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAPYDK 119
+ + + P ++ V GM+P K ++G A RLK Y G P+
Sbjct: 73 RYTGYQGGLKTETAREALSKHPERVIEHAVFGMLP-KGRQGRAMHTRLKVYAGETHPHSA 131
Query: 120 VKRMVI 125
K V+
Sbjct: 132 QKPQVL 137
>d1zbra1 d.126.1.6 (A:3-341) Putative peptidyl-arginine deiminase
{Porphyromonas gingivalis [TaxId: 837]}
Length = 339
Score = 25.8 bits (56), Expect = 1.6
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 7 ICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGG 51
I V+V L +A V + L ++V+ + C + G
Sbjct: 280 IINGAVLVPTYDSHLDAVALSVMQGLFPDREVIGIDCRPLVKQHG 324
>d2btva_ e.28.1.1 (A:) BTV vp3 {Bluetongue virus, strain 1 [TaxId:
40051]}
Length = 845
Score = 25.2 bits (55), Expect = 3.6
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 57 MKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTKRGAAALARLKAYEGVPAP 116
+ YM R ++N P+ P+ F+ + V T G A + PAP
Sbjct: 350 LLYMYNTRVQVNYGPTGEPLDFQIGRNQYDCNVFRADF-ATGTGYNGWATIDVEYRDPAP 408
Query: 117 YDKVKRMV 124
Y +R +
Sbjct: 409 YVHAQRYI 416
>d1xkna_ d.126.1.6 (A:) Putative peptidyl-arginine deiminase
{Chlorobium tepidum [TaxId: 1097]}
Length = 353
Score = 25.1 bits (54), Expect = 3.7
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 30 KELLNGQKVVAVRCEEICMSGG 51
++ ++VV + C ++ G
Sbjct: 313 QQCFPKREVVGIDCSDLIWGLG 334
>d2ewoa1 d.126.1.6 (A:2-370) Agmatine iminohydrolase {Streptococcus
mutans [TaxId: 1309]}
Length = 369
Score = 24.3 bits (52), Expect = 5.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 30 KELLNGQKVVAVRCEEICMSGG 51
+E+ +KVV VR EEI GG
Sbjct: 335 QEMFPDRKVVGVRTEEIAYGGG 356
>d2jera1 d.126.1.6 (A:2-365) Agmatine iminohydrolase {Enterococcus
faecalis [TaxId: 1351]}
Length = 364
Score = 23.9 bits (51), Expect = 7.0
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 30 KELLNGQKVVAVRCEEICMSGG 51
+ + +K+V V E+ GG
Sbjct: 331 QTMFPDKKIVGVNTVEVVYGGG 352
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.138 0.417
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 510,105
Number of extensions: 22184
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 20
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (22.4 bits)