BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032955
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 198 bits (504), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 93/126 (73%), Positives = 103/126 (81%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+
Sbjct: 91 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYD 150
Query: 61 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPEVQ+D + P
Sbjct: 151 ISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMQQYQQEMEQATALP 210
Query: 121 LPDDDD 126
LPD+DD
Sbjct: 211 LPDEDD 216
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 192 bits (488), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 90/127 (70%), Positives = 101/127 (79%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 94 MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 153
Query: 61 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
ISAKSNYNFEKPFL+LARKL GDPNL FV PALAPPEV +D +
Sbjct: 154 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTA 213
Query: 121 LPDDDDD 127
LPD+DDD
Sbjct: 214 LPDEDDD 220
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 192 bits (488), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 90/127 (70%), Positives = 101/127 (79%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 94 MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 153
Query: 61 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
ISAKSNYNFEKPFL+LARKL GDPNL FV PALAPPEV +D +
Sbjct: 154 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTA 213
Query: 121 LPDDDDD 127
LPD+DDD
Sbjct: 214 LPDEDDD 220
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 192 bits (488), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 90/127 (70%), Positives = 101/127 (79%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 89 MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 148
Query: 61 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
ISAKSNYNFEKPFL+LARKL GDPNL FV PALAPPEV +D +
Sbjct: 149 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTA 208
Query: 121 LPDDDDD 127
LPD+DDD
Sbjct: 209 LPDEDDD 215
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 192 bits (488), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 90/127 (70%), Positives = 101/127 (79%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 89 MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 148
Query: 61 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
ISAKSNYNFEKPFL+LARKL GDPNL FV PALAPPEV +D +
Sbjct: 149 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTA 208
Query: 121 LPDDDDD 127
LPD+DDD
Sbjct: 209 LPDEDDD 215
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 192 bits (488), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 90/127 (70%), Positives = 101/127 (79%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 89 MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 148
Query: 61 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
ISAKSNYNFEKPFL+LARKL GDPNL FV PALAPPEV +D +
Sbjct: 149 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTA 208
Query: 121 LPDDDDD 127
LPD+DDD
Sbjct: 209 LPDEDDD 215
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 192 bits (488), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 90/127 (70%), Positives = 101/127 (79%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 89 MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 148
Query: 61 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
ISAKSNYNFEKPFL+LARKL GDPNL FV PALAPPEV +D +
Sbjct: 149 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTA 208
Query: 121 LPDDDDD 127
LPD+DDD
Sbjct: 209 LPDEDDD 215
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 192 bits (487), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 90/127 (70%), Positives = 101/127 (79%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 89 MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 148
Query: 61 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
ISAKSNYNFEKPFL+LARKL GDPNL FV PALAPPEV +D +
Sbjct: 149 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTA 208
Query: 121 LPDDDDD 127
LPD+DDD
Sbjct: 209 LPDEDDD 215
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 190 bits (483), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 89/127 (70%), Positives = 100/127 (78%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 89 MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 148
Query: 61 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
ISAKSNYNFEKPFL+LARKL GDPNL FV P LAPPEV +D +
Sbjct: 149 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPCLAPPEVVMDPALAAQYEHDLEVAQTTA 208
Query: 121 LPDDDDD 127
LPD+DDD
Sbjct: 209 LPDEDDD 215
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 189 bits (479), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 89/126 (70%), Positives = 99/126 (78%)
Query: 2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEI 61
FDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+I
Sbjct: 90 FDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDI 149
Query: 62 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPL 121
SAKSNYNFEKPFL+LARKL GDPNL FV PALAPPEV D + L
Sbjct: 150 SAKSNYNFEKPFLWLARKLIGDPNLEFVAXPALAPPEVVXDPALAAQYEHDLEVAQTTAL 209
Query: 122 PDDDDD 127
PD+DDD
Sbjct: 210 PDEDDD 215
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 185 bits (469), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 87/123 (70%), Positives = 97/123 (78%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 82 MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 141
Query: 61 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQP 120
ISAKSNYNFEKPFL+LARKL GDPNL FV PALAPPEV +D +
Sbjct: 142 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTA 201
Query: 121 LPD 123
LPD
Sbjct: 202 LPD 204
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 169 bits (427), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 76/92 (82%), Positives = 84/92 (91%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 91 MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 150
Query: 61 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESP 92
ISAKSNYNFEKPFL+LARKL GDPNL FV P
Sbjct: 151 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 182
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 168 bits (425), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 76/92 (82%), Positives = 84/92 (91%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 85 MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 144
Query: 61 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESP 92
ISAKSNYNFEKPFL+LARKL GDPNL FV P
Sbjct: 145 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 176
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 166 bits (421), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 76/89 (85%), Positives = 83/89 (93%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+
Sbjct: 83 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYD 142
Query: 61 ISAKSNYNFEKPFLYLARKLAGDPNLHFV 89
ISAKSNYNFEKPFL+LARKLAG+P L FV
Sbjct: 143 ISAKSNYNFEKPFLWLARKLAGNPQLEFV 171
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 166 bits (421), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 76/89 (85%), Positives = 83/89 (93%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+
Sbjct: 84 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYD 143
Query: 61 ISAKSNYNFEKPFLYLARKLAGDPNLHFV 89
ISAKSNYNFEKPFL+LARKLAG+P L FV
Sbjct: 144 ISAKSNYNFEKPFLWLARKLAGNPQLEFV 172
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 166 bits (420), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 75/89 (84%), Positives = 83/89 (93%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 89 MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 148
Query: 61 ISAKSNYNFEKPFLYLARKLAGDPNLHFV 89
ISAKSNYNFEKPFL+LARKL GDPNL FV
Sbjct: 149 ISAKSNYNFEKPFLWLARKLIGDPNLEFV 177
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 164 bits (416), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 74/88 (84%), Positives = 82/88 (93%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
MFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+
Sbjct: 89 MFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD 148
Query: 61 ISAKSNYNFEKPFLYLARKLAGDPNLHF 88
ISAKSNYNFEKPFL+LARKL GDPNL F
Sbjct: 149 ISAKSNYNFEKPFLWLARKLIGDPNLEF 176
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 68/105 (64%), Gaps = 3/105 (2%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQVKAKQVTFH--RKKNLQ 57
FDVT+R+T +N+ W ++ V N PIV+C NK+D+KNRQ +K++ + KN +
Sbjct: 91 FFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYE 150
Query: 58 YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 102
Y+EISAK+ +NF PFL+LAR G P+L FV + L P EV D
Sbjct: 151 YFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTEVNYD 195
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 1 MFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTFHRK 53
+FDVTA T+K + +W + R EN P V+ GNK+D++NRQV K Q + K
Sbjct: 87 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSK 146
Query: 54 KNLQYYEISAKSNYNFEKPFLYLAR 78
N+ Y+E SAK N E+ F +AR
Sbjct: 147 NNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 1 MFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTFHRK 53
+FDVTA T+K + +W + R EN P V+ GNK+D++NRQV K Q + K
Sbjct: 87 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSK 146
Query: 54 KNLQYYEISAKSNYNFEKPFLYLAR 78
N+ Y+E SAK N E+ F +AR
Sbjct: 147 NNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 1 MFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTFHRK 53
+FDVTA T+K + +W + R EN P V+ GNK+D++NRQV K Q + K
Sbjct: 87 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSK 146
Query: 54 KNLQYYEISAKSNYNFEKPFLYLAR 78
N+ Y+E SAK N E+ F +AR
Sbjct: 147 NNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 1 MFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAK--QVTFHRK 53
+FDVTA T+K + +W + R EN P V+ GNK+D +NRQV K Q + K
Sbjct: 87 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDFENRQVATKRAQAWCYSK 146
Query: 54 KNLQYYEISAKSNYNFEKPFLYLAR 78
N+ Y+E SAK N E+ F +AR
Sbjct: 147 NNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 8/102 (7%)
Query: 1 MFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQ 57
++D+T+R TY + W D +NI I+LCGNK D+ +R+V + + F ++ L
Sbjct: 89 VYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELM 148
Query: 58 YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEV 99
+ E SA + N E+ F+ ARK+ L+ +ES L P +
Sbjct: 149 FLETSALTGENVEEAFVQCARKI-----LNKIESGELDPERM 185
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-NRQVKAKQVT-FHRKKNLQ 57
++D+T+R TY ++ W D + NI ++LCGNK D+ R+V + + F ++ L
Sbjct: 104 VYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELM 163
Query: 58 YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEV 99
+ E SA + N E+ FL AR + L+ ++S L P +
Sbjct: 164 FLETSALTGENVEEAFLKCARTI-----LNKIDSGELDPERM 200
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 2 FDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQY 58
+D+T +++ +P W R++ + N + VL GNK+D+ R+ ++Q F +++ Y
Sbjct: 106 YDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYY 165
Query: 59 YEISAKSNYNFEKPFLYLARKLAGDP 84
E SAK + N EK FL LA +L +
Sbjct: 166 LETSAKESDNVEKLFLDLACRLISEA 191
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQ 57
++D+T+R TY + W D +NI I+LCGNK D+ +R+V + + F ++ L
Sbjct: 90 VYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELM 149
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SA + + E+ F+ ARK+
Sbjct: 150 FLETSALTGEDVEEAFVQCARKI 172
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDV-KNRQVKAKQVT-FHRKKNLQ 57
++D+T+R TY + W D +NI I+LCGNK D+ +R+V + + F ++ L
Sbjct: 87 VYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELM 146
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SA + + E+ F+ ARK+
Sbjct: 147 FLETSALTGEDVEEAFVQCARKI 169
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
++D+T R T+ ++ TW D + N+ I+L GNK D+++ R+VK ++ F R+ L
Sbjct: 89 VYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLI 148
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SAK+ N E+ F+ A+++
Sbjct: 149 FMETSAKTASNVEEAFINTAKEI 171
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 1 MFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDV-KNRQVKAKQV-TFHRKKNL 56
MFD+T++ ++ NV W L CEN IVL GNK D+ R+V +Q K +
Sbjct: 100 MFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGI 159
Query: 57 QYYEISAKSNYNFEKP 72
Y+E SA + N EK
Sbjct: 160 PYFETSAATGQNVEKS 175
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 1 MFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDV-KNRQVKAKQV-TFHRKKNL 56
MFD+T++ ++ NV W L CEN IVL GNK D+ R+V +Q K +
Sbjct: 100 MFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGI 159
Query: 57 QYYEISAKSNYNFEKP 72
Y+E SA + N EK
Sbjct: 160 PYFETSAATGQNVEKS 175
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-NRQV---KAKQVTFHRKKN 55
++D+T R TY ++ +W D + N I+L GNK D++ R V +AKQ F +
Sbjct: 94 VYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ--FAEENG 151
Query: 56 LQYYEISAKSNYNFEKPFLYLARKL 80
L + E SAK+ N E FL A+K+
Sbjct: 152 LLFLEASAKTGENVEDAFLEAAKKI 176
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-NRQV---KAKQVTFHRKKN 55
++D+T R TY ++ +W D + N I+L GNK D++ R V +AKQ F +
Sbjct: 109 VYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ--FAEENG 166
Query: 56 LQYYEISAKSNYNFEKPFLYLARKL 80
L + E SAK+ N E FL A+K+
Sbjct: 167 LLFLEASAKTGENVEDAFLEAAKKI 191
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIV--LCGNKVDVKNRQV-KAKQVTFHRKKNLQ 57
++DVT R T+ + W +L C IV L GNK+D +NR+V + + + F RK +
Sbjct: 94 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKENREVDRNEGLKFARKHSXL 153
Query: 58 YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPP 97
+ E SAK+ + F L K+ P L E+ P
Sbjct: 154 FIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNSGPS 193
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 1 MFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDV-KNRQVKAKQV-TFHRKKNL 56
MFD+T++ ++ NV W L CEN IVL GNK D+ R+V +Q K +
Sbjct: 114 MFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGI 173
Query: 57 QYYEISAKSNYNFEK 71
Y+E SA + N EK
Sbjct: 174 PYFETSAATGQNVEK 188
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQ 57
++D+T + T+ TW ++L R +I I L GNK D+ N R V+ ++ + N L
Sbjct: 87 VYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLL 146
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SAK+ N FL +A+KL
Sbjct: 147 FMETSAKTAMNVNDLFLAIAKKL 169
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQ-VKAKQV-TFHRKKNLQ 57
++D+T R T+ ++ +W D + N+ I+L GNK D+++R+ VK ++ F R+ L
Sbjct: 100 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLI 159
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SAK+ N E+ F+ A+++
Sbjct: 160 FMETSAKTACNVEEAFINTAKEI 182
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
++D+ LTY+NV W ++L NI I+L GNK D+++ R V + F K NL
Sbjct: 84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLS 143
Query: 58 YYEISAKSNYNFEKPF 73
+ E SA + N E+ F
Sbjct: 144 FIETSALDSTNVEEAF 159
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 2 FDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDV-KNRQVKAKQV-TFHRKKNLQ 57
FD+T++ ++ NV W L CEN IVL GNK D+ R+V +Q K +
Sbjct: 101 FDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIP 160
Query: 58 YYEISAKSNYNFEKP 72
Y+E SA + N EK
Sbjct: 161 YFETSAATGQNVEKS 175
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 2 FDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDV-KNRQVKAKQV-TFHRKKNLQ 57
FD+T++ ++ NV W L CEN IVL GNK D+ R+V +Q K +
Sbjct: 101 FDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIP 160
Query: 58 YYEISAKSNYNFEKP 72
Y+E SA + N EK
Sbjct: 161 YFETSAATGQNVEKS 175
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
++D+ LTY+NV W ++L NI I+L GNK D+++ R V + F K L
Sbjct: 108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLS 167
Query: 58 YYEISAKSNYNFEKPF 73
+ E SA + N E F
Sbjct: 168 FIETSALDSTNVEAAF 183
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
++D+ LTY+NV W ++L NI I+L GNK D+++ R V + F K L
Sbjct: 108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLS 167
Query: 58 YYEISAKSNYNFEKPF 73
+ E SA + N E F
Sbjct: 168 FIETSALDSTNVEAAF 183
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 1 MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN 55
++DVT + +Y NV W +++ R EN+ +L GNK D+ ++V AK+ F
Sbjct: 88 VYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKE--FADSLG 145
Query: 56 LQYYEISAKSNYNFEKPFLYLARKL 80
+ + E SAK+ N E+ F+ +A ++
Sbjct: 146 IPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 1 MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN 55
++DVT + +Y NV W +++ R EN+ +L GNK D+ ++V AK+ F
Sbjct: 88 VYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKE--FADSLG 145
Query: 56 LQYYEISAKSNYNFEKPFLYLARKL 80
+ + E SAK+ N E+ F+ +A ++
Sbjct: 146 IPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAGRTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQY 58
++DVT+ ++ NV W ++ + C+++ +L GNK D R+V + F + +Q
Sbjct: 88 VYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQL 147
Query: 59 YEISAKSNYNFEKPF 73
+E SAK N N E+ F
Sbjct: 148 FETSAKENVNVEEMF 162
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
++D+ LTY+NV W ++L NI I+L GNK D+++ R V + F K L
Sbjct: 87 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLS 146
Query: 58 YYEISAKSNYNFEKPF 73
+ E SA + N E F
Sbjct: 147 FIETSALDSTNVEAAF 162
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQ 57
++D+T ++ W ++L R NI I L GNK D+ N R V ++ + N L
Sbjct: 85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL 144
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SAK++ N + F+ +A+KL
Sbjct: 145 FMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
++D+ LTY+NV W ++L NI I+L GNK D+++ R V + F K L
Sbjct: 99 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLS 158
Query: 58 YYEISAKSNYNFEKPF 73
+ E SA + N E F
Sbjct: 159 FIETSALDSTNVEAAF 174
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQ 57
++D+T ++ W ++L R NI I L GNK D+ N R V ++ + N L
Sbjct: 86 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL 145
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SAK++ N + F+ +A+KL
Sbjct: 146 FMETSAKTSMNVNEIFMAIAKKL 168
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQ 57
++D+T ++ W ++L R NI I L GNK D+ N R V ++ + N L
Sbjct: 85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL 144
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SAK++ N + F+ +A+KL
Sbjct: 145 FMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQ 57
++D+T ++ W ++L R NI I L GNK D+ N R V ++ + N L
Sbjct: 85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL 144
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SAK++ N + F+ +A+KL
Sbjct: 145 FMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQ 57
++D+T ++ W ++L R NI I L GNK D+ N R V ++ + N L
Sbjct: 85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL 144
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SAK++ N + F+ +A+KL
Sbjct: 145 FMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQ 57
++D+T ++ W ++L R NI I L GNK D+ N R V ++ + N L
Sbjct: 85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL 144
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SAK++ N + F+ +A+KL
Sbjct: 145 FMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NL 56
+F +T ++ + + RV E N+P +L GNK D+++ RQV ++ ++ N+
Sbjct: 84 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV 143
Query: 57 QYYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ N +K F L R++
Sbjct: 144 NYVETSAKTRANVDKVFFDLMREI 167
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQ 57
++D+T ++ W ++L R NI I L GNK D+ N R V ++ + N L
Sbjct: 85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL 144
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SAK++ N + F+ +A+KL
Sbjct: 145 FMETSAKTSMNVNEIFMAIAKKL 167
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQ 57
++D+T ++ W ++L R NI I L GNK D+ N R V ++ + N L
Sbjct: 84 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL 143
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SAK++ N + F+ +A+KL
Sbjct: 144 FMETSAKTSMNVNEIFMAIAKKL 166
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NL 56
+F +T ++ + + RV E N+P +L GNK D+++ RQV ++ ++ N+
Sbjct: 96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV 155
Query: 57 QYYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ N +K F L R++
Sbjct: 156 NYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NL 56
+F +T ++ + + RV E N+P +L GNK D+++ RQV ++ ++ N+
Sbjct: 84 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV 143
Query: 57 QYYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ N +K F L R++
Sbjct: 144 NYVETSAKTRANVDKVFFDLMREI 167
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 87 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 146
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 147 YIETSAKTRQGVEDAFYTLVREI 169
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
++D+ LTY+NV W ++L NI I L GNK D+++ R V + F K L
Sbjct: 90 VYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLS 149
Query: 58 YYEISAKSNYNFEKPF 73
+ E SA + N E F
Sbjct: 150 FIETSALDSTNVEAAF 165
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 1 MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN 55
++DVT + ++ NV W +++ R EN+ +L GNK D+ ++V AK+ F
Sbjct: 95 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLG 152
Query: 56 LQYYEISAKSNYNFEKPFLYLARKL 80
+ + E SAK+ N E+ F+ +A ++
Sbjct: 153 IPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 88 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 147
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 148 YIETSAKTRQGVEDAFYTLVREI 170
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 86 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 145
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 146 YIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 86 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 145
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 146 YIETSAKTRQGVEDAFYTLVREI 168
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
++D+ LTY+NV W ++L NI I L GNK D+++ R V + F K L
Sbjct: 84 VYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLS 143
Query: 58 YYEISAKSNYNFEKPF 73
+ E SA + N E F
Sbjct: 144 FIETSALDSTNVEAAF 159
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 2 FDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 56
F V +++N+ W ++ E+ P V+ GNK D+K RQV ++ K N
Sbjct: 91 FSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKERQVSTEEAQAWCKDNG 150
Query: 57 Q--YYEISAKSNYNFEKPFLYLARKL 80
Y+E SAK + N F R++
Sbjct: 151 DYPYFETSAKDSTNVAAAFEEAVRRI 176
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 86 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 145
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 146 YIETSAKTRQGVEDAFYTLVREI 168
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NL 56
+F +T ++ + + RV E N+P +L GNK D+++ RQV ++ ++ N+
Sbjct: 92 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV 151
Query: 57 QYYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ N +K F L R++
Sbjct: 152 NYVETSAKTRANVDKVFFDLMREI 175
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NL 56
+F +T ++ + + RV E N+P +L GNK D+++ RQV ++ + N+
Sbjct: 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNV 141
Query: 57 QYYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ N +K F L R++
Sbjct: 142 NYVETSAKTRANVDKVFFDLMREI 165
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKA--KQVTFHRKKNLQ 57
++DVT R ++ NV W +++ R EN+ +L GNK D+ +++V + ++
Sbjct: 88 VYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSKRVVTSDEGRELADSHGIK 147
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SAK+ YN E+ F +A ++
Sbjct: 148 FIETSAKNAYNVEQAFHTMAGEI 170
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQ 57
++D+T T+ W ++L R NI I L GNK D+ + R V+ ++ + N L
Sbjct: 84 VYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLL 143
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SAK+ N + F+ +A+KL
Sbjct: 144 FMETSAKTAMNVNEIFMAIAKKL 166
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQ 57
++D+T T+ W ++L R NI I L GNK D+ + R V+ ++ + N L
Sbjct: 84 VYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLL 143
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SAK+ N + F+ +A+KL
Sbjct: 144 FMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQ 57
++D+T T+ W ++L R NI I L GNK D+ + R V+ ++ + N L
Sbjct: 82 VYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLL 141
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SAK+ N + F+ +A+KL
Sbjct: 142 FMETSAKTAMNVNEIFMAIAKKL 164
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 1 MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN 55
++DVT + ++ NV W +++ R EN+ +L GNK D+ ++V AK+ F
Sbjct: 95 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLG 152
Query: 56 LQYYEISAKSNYNFEKPFLYLARKL 80
+ + E SAK+ N E+ F+ +A ++
Sbjct: 153 IPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
+FDVT + +++ W ++L + N+ + L GNK D+ + R+V A+ T+ ++ L
Sbjct: 91 VFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLF 150
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SAK+ N ++ F +AR+L
Sbjct: 151 FMETSAKTATNVKEIFYEIARRL 173
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 1 MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN 55
++DVT + ++ NV W +++ R EN+ +L GNK D+ ++V AK+ F
Sbjct: 104 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLG 161
Query: 56 LQYYEISAKSNYNFEKPFLYLARKL 80
+ + E SAK+ N E+ F+ +A ++
Sbjct: 162 IPFLETSAKNATNVEQSFMTMAAEI 186
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 1 MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN 55
++DVT + ++ NV W +++ R EN+ +L GNK D+ ++V AK+ F
Sbjct: 85 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLG 142
Query: 56 LQYYEISAKSNYNFEKPFLYLARKL 80
+ + E SAK+ N E+ F+ +A ++
Sbjct: 143 IPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 1 MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN 55
++DVT + ++ NV W +++ R EN+ +L GNK D+ ++V AK+ F
Sbjct: 78 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLG 135
Query: 56 LQYYEISAKSNYNFEKPFLYLARKL 80
+ + E SAK+ N E+ F+ +A ++
Sbjct: 136 IPFLETSAKNATNVEQSFMTMAAEI 160
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 1 MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN 55
++DVT + ++ NV W +++ R EN+ +L GNK D+ ++V AK+ F
Sbjct: 85 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLG 142
Query: 56 LQYYEISAKSNYNFEKPFLYLARKL 80
+ + E SAK+ N E+ F+ +A ++
Sbjct: 143 IPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GNK D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R+
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREF 163
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQ 57
++D+T ++ W ++L R NI I L GNK D+ N R V ++ + N L
Sbjct: 86 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL 145
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SAK++ N + F +A+KL
Sbjct: 146 FXETSAKTSXNVNEIFXAIAKKL 168
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 1 MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--- 56
++D+T ++ N+ W R++ ++ ++ GNK DV ++ +QV+ R + L
Sbjct: 85 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK----RQVSKERGEKLALD 140
Query: 57 ---QYYEISAKSNYNFEKPFLYLARKL 80
++ E SAK+N N E F LAR +
Sbjct: 141 YGIKFMETSAKANINVENAFFTLARDI 167
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK---N 55
++ +TA+ T+ ++ + RV E++P++L GNK D+++ +V K+ + + N
Sbjct: 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCN 140
Query: 56 LQYYEISAKSNYNFEKPFLYLARKL 80
+ E SAKS N + F L R++
Sbjct: 141 CAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV +++P+VL GN+ D+ R V+++Q R +
Sbjct: 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLAARTVESRQAQDLARSYGIP 140
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK+ E F L R++
Sbjct: 141 YIETSAKTRQGVEDAFYTLVREI 163
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 11/87 (12%)
Query: 1 MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--- 56
++D+T ++ N+ W R++ ++ ++ GNK DV ++ +QV+ R + L
Sbjct: 87 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK----RQVSKERGEKLALD 142
Query: 57 ---QYYEISAKSNYNFEKPFLYLARKL 80
++ E SAK+N N E F LAR +
Sbjct: 143 YGIKFMETSAKANINVENAFFTLARDI 169
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK---N 55
++ +TA+ T+ ++ + RV E++P++L GNK D+++ +V K+ + + N
Sbjct: 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCN 140
Query: 56 LQYYEISAKSNYNFEKPFLYLARKL 80
+ E SAKS N + F L R++
Sbjct: 141 CAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNL 56
+F VT R +++ + + R + RV + P++L GNK D+ + RQV ++ R+ +
Sbjct: 83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKV 142
Query: 57 QYYEISAKSNYNFEKPFLYLAR 78
Y E SAK N ++ F L R
Sbjct: 143 TYMEASAKIRMNVDQAFHELVR 164
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV E++P+VL GNK D+ +R V KQ R +
Sbjct: 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIP 141
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SAK+ + F L R++
Sbjct: 142 FIETSAKTRQGVDDAFYTLVREI 164
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNL 56
+F + R ++ V + RV + + P+VL GNK D+++ RQV +++ F ++
Sbjct: 87 VFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHV 146
Query: 57 QYYEISAKSNYNFEKPFLYLARKL 80
Y+E SAK N ++ F L R +
Sbjct: 147 AYFEASAKLRLNVDEAFEQLVRAV 170
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 50/85 (58%), Gaps = 14/85 (16%)
Query: 1 MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK-NRQVK-------AKQVTFH 51
++D+T + T+ ++P W + + + E+ ++L GNK+D + +R++ A+Q+T
Sbjct: 105 VYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQIT-- 162
Query: 52 RKKNLQYYEISAKSNYNFEKPFLYL 76
+++ E SAK N+N ++ FL L
Sbjct: 163 ---GMRFCEASAKDNFNVDEIFLKL 184
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD------VKNRQVKAKQVTFHRKK 54
+F T R +++ + +W + +IP L NK+D +KN + + ++
Sbjct: 84 VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEG----LAKRL 139
Query: 55 NLQYYEISAKSNYNFEKPFLYLARK 79
L++Y S K + N + F YLA K
Sbjct: 140 KLRFYRTSVKEDLNVSEVFKYLAEK 164
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV E++P+VL GNK D+ +R V KQ R +
Sbjct: 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIP 141
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SAK+ + F L R++
Sbjct: 142 FIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV E++P+VL GNK D+ +R V KQ R +
Sbjct: 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIP 141
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SAK+ + F L R++
Sbjct: 142 FIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV E++P+VL GNK D+ +R V KQ R +
Sbjct: 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIP 141
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SAK+ + F L R++
Sbjct: 142 FIETSAKTRQGVDDAFYTLVREI 164
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKN 55
++ +TA+ T+ ++ + RV +++P++L GNK D+++ +V K Q + N
Sbjct: 83 VYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNN 142
Query: 56 LQYYEISAKSNYNFEKPFLYLARKL 80
+ E SAKS N + F L R++
Sbjct: 143 CAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKN 55
++ +TA+ T+ ++ + RV +++P++L GNK D+++ +V K Q + N
Sbjct: 81 VYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNN 140
Query: 56 LQYYEISAKSNYNFEKPFLYLARKL 80
+ E SAKS N + F L R++
Sbjct: 141 CAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQ 57
+F + +++++ + + RV E++P+VL GNK D+ +R V KQ R +
Sbjct: 99 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIP 158
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SAK+ + F L R++
Sbjct: 159 FIETSAKTRQGVDDAFYTLVREI 181
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 12/87 (13%)
Query: 2 FDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYY 59
+D+T R ++ +VP W D+ + NI +L GNK D+ + ++V+ ++L ++Y
Sbjct: 109 YDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS----ELREVSLAEAQSLAEHY 164
Query: 60 EI------SAKSNYNFEKPFLYLARKL 80
+I SAK + N E+ FL +A +L
Sbjct: 165 DILCAIETSAKDSSNVEEAFLRVATEL 191
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 2 FDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 56
F V +++N+ W ++ E+ P V+ GNK+D+ RQV ++ + N
Sbjct: 87 FSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNG 146
Query: 57 Q--YYEISAKSNYNFEKPFLYLARKL 80
Y+E SAK N F R++
Sbjct: 147 DYPYFETSAKDATNVAAAFEEAVRRV 172
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 15/73 (20%)
Query: 16 WHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVTFHRKKNL-------QYYE 60
W ++ C+ +PI+L G KVD++N RQ + VT +++ YYE
Sbjct: 104 WIAEVLHFCQGVPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYE 163
Query: 61 ISAKSNYNFEKPF 73
SAK+ Y + F
Sbjct: 164 CSAKTGYGVREVF 176
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 2 FDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 56
F V +++N+ W ++ E+ P V+ GNK+D+ RQV ++ + N
Sbjct: 89 FSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNG 148
Query: 57 Q--YYEISAKSNYNFEKPFLYLARKL 80
Y+E SAK N F R++
Sbjct: 149 DYPYFETSAKDATNVAAAFEEAVRRV 174
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQ 57
++D+T +++ W D+ ++ I+L GNK D+ + RQV ++ K+ N+
Sbjct: 95 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM 154
Query: 58 YYEISAKSNYNFEKPFLYLARKLAG 82
+ E SAK+ YN ++ F +A L G
Sbjct: 155 FIETSAKAGYNVKQLFRRVAAALPG 179
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQ 57
++D+T ++ W D+ ++ I+L GNK D+ + RQV ++ K+ N+
Sbjct: 93 VYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM 152
Query: 58 YYEISAKSNYNFEKPFLYLARKLAG 82
+ E SAK+ YN ++ F +A L G
Sbjct: 153 FIETSAKAGYNVKQLFRRVAAALPG 177
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 1 MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN 55
++DVT + ++ NV W +++ R EN+ +L GNK D+ ++V AK+ F
Sbjct: 112 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKE--FADSLG 169
Query: 56 LQYYEISAKSNYNFEKPFLYLARKL 80
+ + E SAK+ N E+ F A ++
Sbjct: 170 IPFLETSAKNATNVEQSFXTXAAEI 194
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQ 57
++D+T +++ W D+ ++ I+L GNK D+ + RQV ++ K+ N+
Sbjct: 92 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM 151
Query: 58 YYEISAKSNYNFEKPFLYLARKLAG 82
+ E SAK+ YN ++ F +A L G
Sbjct: 152 FIETSAKAGYNVKQLFRRVAAALPG 176
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 1 MFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNL 56
+FD+T ++ NV W L EN IVLCGNK D+++ R VK ++ K +
Sbjct: 100 LFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGI 159
Query: 57 QYYEISAKSNYN 68
Y+E SA + N
Sbjct: 160 PYFETSAANGTN 171
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 38.9 bits (89), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 2 FDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL 56
F V R +++N+ W ++ E+ P V+ GNKVD ++RQV ++ +N
Sbjct: 87 FSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDKEDRQVTTEEAQTWCMENG 146
Query: 57 Q--YYEISAKSNYNFEKPFLYLARKL 80
Y E SAK + N F R++
Sbjct: 147 DYPYLETSAKDDTNVTVAFEEAVRQV 172
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQ 57
++D+T +++ W D+ ++ I+L GNK D+ + RQV ++ K+ N+
Sbjct: 85 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM 144
Query: 58 YYEISAKSNYNFEKPFLYLARKLAG 82
+ E SAK+ YN ++ F +A L G
Sbjct: 145 FIETSAKAGYNVKQLFRRVAAALPG 169
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNR-QVKAKQVTFHRKK-N 55
+F +T ++ + + RV + IP+++ GNK D++ R QV ++ ++
Sbjct: 85 VFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWG 144
Query: 56 LQYYEISAKSNYNFEKPFLYLARKL 80
+QY E SAK+ N +K F L R++
Sbjct: 145 VQYVETSAKTRANVDKVFFDLMREI 169
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNR-QVKAKQVTFHRKK-N 55
+F +T ++ + + RV + IP+++ GNK D++ R QV ++ ++
Sbjct: 81 VFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWG 140
Query: 56 LQYYEISAKSNYNFEKPFLYLARKL 80
+QY E SAK+ N +K F L R++
Sbjct: 141 VQYVETSAKTRANVDKVFFDLMREI 165
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 1 MFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQVT----FHRKK 54
++DVT ++ N+ W D+ E +PI+L GNK D+++ Q F K
Sbjct: 107 LYDVTCEKSFLNIREWV-DMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKL 165
Query: 55 NLQYY----EISAKSNYNFEKPFLYLARKL 80
+ Y E SAK N + L+LAR++
Sbjct: 166 AMTYGALFCETSAKDGSNIVEAVLHLAREV 195
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQ 57
++D+T +++ W D+ ++ I+L GNK D+ + RQV ++ K+ N+
Sbjct: 85 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM 144
Query: 58 YYEISAKSNYNFEKPFLYLARKLAG 82
+ E SAK+ YN ++ F +A L G
Sbjct: 145 FIETSAKAGYNVKQLFRRVAAALPG 169
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN 55
++D+T + +++N+ W ++L + NI I+L GNK D+K+ +V A Q + +K+
Sbjct: 87 VYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKHLRVINDNDATQ--YAKKEK 144
Query: 56 LQYYEISAKSNYNFEKPF 73
L + E SA N E F
Sbjct: 145 LAFIETSALEATNVELAF 162
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 1 MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQY 58
++DVT T+ N+ W + + + ++L GNK D++ R V A Q ++ + +
Sbjct: 86 VYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPF 145
Query: 59 YEISAKSNYNFEKPFLYLAR 78
E SAK++ N + F LA+
Sbjct: 146 IESSAKNDDNVNEIFFTLAK 165
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 1 MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQY 58
++DVT T+ N+ W + + + ++L GNK D++ R V A Q ++ + +
Sbjct: 99 VYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPF 158
Query: 59 YEISAKSNYNFEKPFLYLAR 78
E SAK++ N + F LA+
Sbjct: 159 IESSAKNDDNVNEIFFTLAK 178
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQ 57
+F + ++ ++ + + RV +++P+VL GNK D+ R V KQ + +
Sbjct: 99 VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIP 158
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SAK+ E F L R++
Sbjct: 159 FIETSAKTRQGVEDAFYTLVREI 181
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKN 55
++ +T+R + + + + +C + E+IPI+L GNK D +R+V++ + R
Sbjct: 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWK 140
Query: 56 LQYYEISAKSNYNFEKPF 73
+ E SAK N+N ++ F
Sbjct: 141 CAFMETSAKLNHNVKELF 158
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQYY 59
+FD++ T TW L ++ N I+L NK+D QV +V + + NL +
Sbjct: 123 VFDISNSNTLDRAKTWVNQL-KISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFI 181
Query: 60 EISAKSNYNFEKPFLYLARKL 80
+ SAK+ N + F LA ++
Sbjct: 182 QTSAKTGTNIKNIFYMLAEEI 202
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 1 MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQY 58
++DVT T+ N+ W + + + ++L GNK D + R V A Q ++ + +
Sbjct: 82 VYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETRVVTADQGEALAKELGIPF 141
Query: 59 YEISAKSNYNFEKPFLYLAR 78
E SAK++ N + F LA+
Sbjct: 142 IESSAKNDDNVNEIFFTLAK 161
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNL 56
+F VT++ + + + ++ + ++ E+IP++L GNK D R+V ++ ++
Sbjct: 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKC 145
Query: 57 QYYEISAKSNYNFEKPFLYL 76
+ E SAK NYN ++ F L
Sbjct: 146 AFMETSAKMNYNVKELFQEL 165
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 1 MFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN 55
M+D+T ++ V W + +N ++L GNK D+++ +V + +Q+ H
Sbjct: 84 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHL--G 141
Query: 56 LQYYEISAKSNYNFEKPF 73
+++E SAK N N ++ F
Sbjct: 142 FEFFEASAKDNINVKQTF 159
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQ 57
++D+T +++ W D+ ++ I+L GNK D+ + RQV ++ K+ N+
Sbjct: 80 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM 139
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SAK+ YN ++ F +A L
Sbjct: 140 FIETSAKAGYNVKQLFRRVAAAL 162
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 1 MFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDV-----KNRQVKAKQVTFHRKK 54
++DVT ++ W ++L + ++I I L GNK+D + + + + +K
Sbjct: 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEK 141
Query: 55 NLQYYEISAKSNYNFEKPFLYLARKL 80
L ++E SAK+ N FL + K+
Sbjct: 142 GLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNL 56
++ VT + ++++V +H+ + RV E+ P++L NKVD+ + R+V Q K N+
Sbjct: 96 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNI 155
Query: 57 QYYEISAKS-NYNFEKPFLYLAR 78
Y E SAK N +K F L R
Sbjct: 156 PYIETSAKDPPLNVDKTFHDLVR 178
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNL 56
++ VT + ++++V +H+ + RV E+ P++L NKVD+ + R+V Q K N+
Sbjct: 96 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNI 155
Query: 57 QYYEISAKS-NYNFEKPFLYLAR 78
Y E SAK N +K F L R
Sbjct: 156 PYIETSAKDPPLNVDKTFHDLVR 178
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAKQVT-FHRKKNL 56
++ VT + ++++V +H+ + RV E+ P++L NKVD+ + R+V Q K N+
Sbjct: 96 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNI 155
Query: 57 QYYEISAKS-NYNFEKPFLYLAR 78
Y E SAK N +K F L R
Sbjct: 156 PYIETSAKDPPLNVDKTFHDLVR 178
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQ 57
+FD+T TY V W ++L E I ++L GNK D+ R+V ++ F L
Sbjct: 104 VFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLL 163
Query: 58 YYEISAKSNYNFEKPF 73
+ E SA + N E F
Sbjct: 164 FLETSALDSTNVELAF 179
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAKQVT-FHRKKNL 56
++ VT + ++++V +H+ + RV E+ P++L NKVD+ + R+V Q K N+
Sbjct: 91 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNI 150
Query: 57 QYYEISAKS-NYNFEKPFLYLAR 78
Y E SAK N +K F L R
Sbjct: 151 PYIETSAKDPPLNVDKTFHDLVR 173
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 1 MFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQVTF----HRKKN 55
++D+T +++ W D+ ++ I+L GNK D+ ++ +Q+T R K
Sbjct: 81 VYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK----RQITIEEGEQRAKE 136
Query: 56 LQ--YYEISAKSNYNFEKPFLYLARKL 80
L + E SAK+ YN ++ F +A L
Sbjct: 137 LSVMFIETSAKTGYNVKQLFRRVASAL 163
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 1 MFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVD-VKNRQV-----KAKQVTFHR 52
++ +T R +++ L R E+IPI+L GNK D V+ R+V +A V F
Sbjct: 87 VYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDX 146
Query: 53 KKNLQYYEISAKSNYNFEKPFLYLARKL 80
K + E SA +N ++ F + R++
Sbjct: 147 K----FIETSAAVQHNVKELFEGIVRQV 170
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDV-KNRQVKAKQV-TFHRKKNLQ 57
+FD+T TY V W ++L E I ++L GNK D+ + R+V ++ F L
Sbjct: 89 VFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLL 148
Query: 58 YYEISAKSNYNFEKPF 73
+ E SA + N E F
Sbjct: 149 FLETSALDSTNVELAF 164
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 16/93 (17%)
Query: 2 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT----------- 49
F + + + +N+P W ++ C N+PI+L GNK D++N + A+++
Sbjct: 84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTARELAKMKQEPVKPAE 143
Query: 50 ----FHRKKNLQYYEISAKSNYNFEKPFLYLAR 78
+R Y E SAK+ + F R
Sbjct: 144 GRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 16/88 (18%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVTFHR 52
FDVT+ ++ N+ W+ ++ C+ +PI++ G K D++ R+ + VT+HR
Sbjct: 113 FDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHR 172
Query: 53 KKNL-------QYYEISAKSNYNFEKPF 73
+ + Y E SA+ + N F
Sbjct: 173 GQEMARSVGAVAYLECSARLHDNVHAVF 200
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Query: 1 MFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVD-VKNRQV-----KAKQVTFHR 52
++ +T R +++ L R E+IPI+L GNK D V+ R+V +A V F
Sbjct: 87 VYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVF-- 144
Query: 53 KKNLQYYEISAKSNYNFEKPFLYLARKL 80
+ ++ E SA +N ++ F + R++
Sbjct: 145 --DCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 2 FDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNL 56
+D+T ++ V W + +N ++L GNK D ++ +V + +Q+ H
Sbjct: 88 YDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDERVVSSERGRQLADHL--GF 145
Query: 57 QYYEISAKSNYNFEKPF 73
+++E SAK N N ++ F
Sbjct: 146 EFFEASAKDNINVKQTF 162
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 17/92 (18%)
Query: 1 MFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDVKNRQVKAKQV------TFH 51
++D+T ++ ++P W + C+ + +IP +L GNK D+++ A QV F
Sbjct: 100 VYDMTNMASFHSLPAWIEE-CKQHLLANDIPRILVGNKCDLRS----AIQVPTDLAQKFA 154
Query: 52 RKKNLQYYEISAKS---NYNFEKPFLYLARKL 80
++ +E SAK+ N + E F+ LA KL
Sbjct: 155 DTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ---------VKAKQVTFH 51
F + ++ +Y+NV W +L R N+PIVL G K+D+++ + + + Q
Sbjct: 88 FSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEEL 147
Query: 52 RKK--NLQYYEISAKSNYNFEKPF 73
RK+ Y E S+K+ N + F
Sbjct: 148 RKQIGAAAYIECSSKTQQNVKAVF 171
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 2 FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ------VKAKQV------ 48
F + + + +N+P W ++ C N+PI+L GNK D++N + K KQ
Sbjct: 87 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEE 146
Query: 49 ---TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78
+R Y E SAK+ + F R
Sbjct: 147 GRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 2 FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ------VKAKQV------ 48
F + + + +N+P W ++ C N+PI+L GNK D++N + K KQ
Sbjct: 88 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEE 147
Query: 49 ---TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78
+R Y E SAK+ + F R
Sbjct: 148 GRDMANRIGAFGYMECSAKTKDGVREVFEMATR 180
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 2 FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ------VKAKQV------ 48
F + + + +N+P W ++ C N+PI+L GNK D++N + K KQ
Sbjct: 86 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEE 145
Query: 49 ---TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78
+R Y E SAK+ + F R
Sbjct: 146 GRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 33.1 bits (74), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 2 FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ------VKAKQV------ 48
F + + + +N+P W ++ C N+PI+L GNK D++N + K KQ
Sbjct: 85 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEE 144
Query: 49 ---TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78
+R Y E SAK+ + F R
Sbjct: 145 GRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 33.1 bits (74), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 2 FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ------VKAKQV------ 48
F + + + +N+P W ++ C N+PI+L GNK D++N + K KQ
Sbjct: 82 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEE 141
Query: 49 ---TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78
+R Y E SAK+ + F R
Sbjct: 142 GRDMANRIGAFGYMECSAKTKDGVREVFEMATR 174
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 33.1 bits (74), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 2 FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ------VKAKQV------ 48
F + + + +N+P W ++ C N+PI+L GNK D++N + K KQ
Sbjct: 84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEE 143
Query: 49 ---TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78
+R Y E SAK+ + F R
Sbjct: 144 GRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 2 FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ------VKAKQV------ 48
F + + + +N+P W ++ C N+PI+L GNK D++N + K KQ
Sbjct: 82 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEE 141
Query: 49 ---TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78
+R Y E SAK+ + F R
Sbjct: 142 GRDMANRIGAFGYMECSAKTKDGVREVFEMATR 174
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 2 FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ------VKAKQV------ 48
F + + + +N+P W ++ C N+PI+L GNK D++N + K KQ
Sbjct: 85 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEE 144
Query: 49 ---TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78
+R Y E SAK+ + F R
Sbjct: 145 GRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 2 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------VKAKQV------ 48
F + + + +N+P W ++ C N+PI+L GNK D++N + K KQ
Sbjct: 86 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEE 145
Query: 49 ---TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78
+R Y E SAK+ + F R
Sbjct: 146 GRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 11/88 (12%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVCENI------PIVLCGNKVDV-KNRQVKAKQVTFHRK 53
++DVT +++N+ +W RD V N+ P V+ GNK+D +++++ +++
Sbjct: 88 VYDVTNASSFENIKSW-RDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELA 146
Query: 54 KNLQ---YYEISAKSNYNFEKPFLYLAR 78
K+L + SAK+ N + F +AR
Sbjct: 147 KSLGDIPLFLTSAKNAINVDTAFEEIAR 174
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 2 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------VKAKQV------ 48
F + + + +N+P W ++ C N+PI+L GNK D++N + K KQ
Sbjct: 84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEE 143
Query: 49 ---TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78
+R Y E SAK+ + F R
Sbjct: 144 GRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 32.7 bits (73), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 2 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------VKAKQV------ 48
F + + + +N+P W ++ C N+PI+L GNK D++N + K KQ
Sbjct: 87 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEE 146
Query: 49 ---TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78
+R Y E SAK+ + F R
Sbjct: 147 GRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 32.7 bits (73), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 2 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------VKAKQV------ 48
F + + + +N+P W ++ C N+PI+L GNK D++N + K KQ
Sbjct: 84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEE 143
Query: 49 ---TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78
+R Y E SAK+ + F R
Sbjct: 144 GRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 32.7 bits (73), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 2 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------VKAKQV------ 48
F + + + +N+P W ++ C N+PI+L GNK D++N + K KQ
Sbjct: 86 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEE 145
Query: 49 ---TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78
+R Y E SAK+ + F R
Sbjct: 146 GRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 32.7 bits (73), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 2 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------VKAKQV------ 48
F + + + +N+P W ++ C N+PI+L GNK D++N + K KQ
Sbjct: 84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEE 143
Query: 49 ---TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78
+R Y E SAK+ + F R
Sbjct: 144 GRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Query: 1 MFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVD-VKNRQV-----KAKQVTFHR 52
++ +T R +++ L R E+IPI+L GNK D V+ R+V +A V F
Sbjct: 118 VYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF-- 175
Query: 53 KKNLQYYEISAKSNYNFEKPFLYLARKL 80
+ ++ E SA +N ++ F + R++
Sbjct: 176 --DCKFIETSAAVQHNVKELFEGIVRQV 201
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 12/88 (13%)
Query: 1 MFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVD-VKNRQV-----KAKQVTFHR 52
++ +T R +++ L R E+IPI+L GNK D V+ R+V +A V F
Sbjct: 87 VYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF-- 144
Query: 53 KKNLQYYEISAKSNYNFEKPFLYLARKL 80
+ ++ E SA +N ++ F + R++
Sbjct: 145 --DCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--Q 57
M+D+ + ++ V W + +N ++L GNK D+++ +V + +L +
Sbjct: 101 MYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFE 160
Query: 58 YYEISAKSNYNFEKPF 73
++E SAK N N ++ F
Sbjct: 161 FFEASAKENINVKQVF 176
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 16/93 (17%)
Query: 2 FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ------VKAKQV------ 48
F + + + +N+P W ++ C N+PI+L GNK D++ + K KQ
Sbjct: 104 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEE 163
Query: 49 ---TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78
+R Y E SAK+ + F R
Sbjct: 164 GRDMANRISAFGYLECSAKTKEGVREVFEMATR 196
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 1 MFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-- 56
+F VT R ++ VP L R ++P++L GNK D+ ++++V+ ++L
Sbjct: 103 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL----ARSREVSLEEGRHLAG 158
Query: 57 ----QYYEISAKSNYNFEKPFLYLARKL 80
++ E SA ++N + F R++
Sbjct: 159 TLSCKHIETSAALHHNTRELFEGAVRQI 186
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQVT-FHRKKNLQ 57
++D+T T+ + W R+L + +I + + GNK D+ + R+V + + +
Sbjct: 84 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAI 143
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SAK+ N + F+ ++R++
Sbjct: 144 FVETSAKNAININELFIEISRRI 166
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQVT-FHRKKNLQ 57
++D+T T+ + W R+L + +I + + GNK D+ + R+V + + +
Sbjct: 85 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAI 144
Query: 58 YYEISAKSNYNFEKPFLYLARKL 80
+ E SAK+ N + F+ ++R++
Sbjct: 145 FVETSAKNAININELFIEISRRI 167
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 12/88 (13%)
Query: 1 MFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVD-VKNRQV-----KAKQVTFHR 52
++ VT + +++ L R +++PI+L GNK D V++R+V +A V F
Sbjct: 84 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF-- 141
Query: 53 KKNLQYYEISAKSNYNFEKPFLYLARKL 80
+ ++ E SA ++N + F + R++
Sbjct: 142 --DCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 12/88 (13%)
Query: 1 MFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVD-VKNRQV-----KAKQVTFHR 52
++ VT + +++ L R +++PI+L GNK D V++R+V +A V F
Sbjct: 84 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF-- 141
Query: 53 KKNLQYYEISAKSNYNFEKPFLYLARKL 80
+ ++ E SA ++N + F + R++
Sbjct: 142 --DCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 1 MFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-- 56
+F VT R ++ VP L R ++P++L GNK D+ ++++V+ ++L
Sbjct: 92 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL----ARSREVSLEEGRHLAG 147
Query: 57 ----QYYEISAKSNYNFEKPFLYLARKL 80
++ E SA ++N + F R++
Sbjct: 148 TLSCKHIETSAALHHNTRELFEGAVRQI 175
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 1 MFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-- 56
+F VT R ++ VP L R ++P++L GNK D+ ++++V+ ++L
Sbjct: 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL----ARSREVSLEEGRHLAG 137
Query: 57 ----QYYEISAKSNYNFEKPFLYLARKL 80
++ E SA ++N + F R++
Sbjct: 138 TLSCKHIETSAALHHNTRELFEGAVRQI 165
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 16/93 (17%)
Query: 2 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------VKAKQV------ 48
F + + + +N+P W ++ C N+PI+L GNK D++ + K KQ
Sbjct: 84 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEE 143
Query: 49 ---TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78
+R Y E SAK+ + F R
Sbjct: 144 GRDMANRISAFGYLECSAKTKEGVREVFEMATR 176
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 10/66 (15%)
Query: 21 CRVCENIPIVLCGNKVD-VKNRQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 74
R +++PI+L GNK D V++R+V +A V F + ++ E SA ++N + F
Sbjct: 101 ARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF----DCKFIETSAALHHNVQALFE 156
Query: 75 YLARKL 80
+ R++
Sbjct: 157 GVVRQI 162
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 14/86 (16%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQV------KAKQVTFHRKK 54
F + ++ +Y+N+ W +L IPIVL G K+D+++ + A +T + +
Sbjct: 85 FSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDDKQFLKDHPGAASITTAQGE 144
Query: 55 NL-------QYYEISAKSNYNFEKPF 73
L +Y E S+K+ N + F
Sbjct: 145 ELRKMIGAVRYLECSSKTQQNVKAVF 170
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 17/92 (18%)
Query: 1 MFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDVKNRQVKAKQV------TFH 51
++D T ++ ++P W + C+ + +IP +L GNK D+++ A QV F
Sbjct: 109 VYDXTNXASFHSLPAWIEE-CKQHLLANDIPRILVGNKCDLRS----AIQVPTDLAQKFA 163
Query: 52 RKKNLQYYEISAKS---NYNFEKPFLYLARKL 80
+ +E SAK+ N + E F LA KL
Sbjct: 164 DTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 14/86 (16%)
Query: 2 FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ---------VKAKQVTFH 51
F + ++ +Y+NV W +L +PIVL G K+D+++ + V V
Sbjct: 87 FSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGE 146
Query: 52 RKKNL----QYYEISAKSNYNFEKPF 73
K L Y E S+KS N + F
Sbjct: 147 ELKKLIGAPAYIECSSKSQENVKGVF 172
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 2 FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQV------KAKQVTFHRKK 54
F + ++ +Y+NV W +L +PI+L G K+D+++ + A +T ++ +
Sbjct: 85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGE 144
Query: 55 NLQ-------YYEISAKSNYNFEKPF 73
L+ Y E S+K+ N + F
Sbjct: 145 ELKKLIGSPIYIECSSKTQQNVKAVF 170
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 49
F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 109 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 162
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 49
F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 109 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 162
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 49
F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 109 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 162
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 49
F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 92 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 145
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 49
F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 89 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 142
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 49
F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 101 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 154
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 49
F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 103 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 156
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 49
F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 85 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 138
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 49
F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 82 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 28.9 bits (63), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 49
F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 86 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 139
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 28.9 bits (63), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 49
F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 84 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 137
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 28.9 bits (63), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 49
F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 82 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 28.9 bits (63), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 49
F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 82 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 49
F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 82 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 49
F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 82 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 49
F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 82 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 49
F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 82 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 49
F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 82 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 49
F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 82 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 49
F + + +++NV W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 82 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 135
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human Grlf1
(P190rhogap)
Length = 255
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 28 PIVLCGNKVDVK-NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78
PIV+ K D R ++ KKNLQ E SA+SN N + F L +
Sbjct: 200 PIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ 251
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 2 FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 40
F V + + +N+P W ++ C N+PI+L NK D+++
Sbjct: 104 FSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRS 143
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
Query: 16 WHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 49
W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 249 WYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 287
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
Query: 16 WHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 49
W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 249 WYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 287
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 40
F + + +Y+NV W ++ C + PI+L G K+D+++
Sbjct: 89 FSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 128
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
Query: 16 WHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAKQVT 49
W+ ++ C N PI+L G K+D+++ ++K K++T
Sbjct: 249 WYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 287
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 16/93 (17%)
Query: 2 FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ------VKAKQV------ 48
F + + + +N+P W ++ N+PI+L GNK D++ + K KQ
Sbjct: 104 FSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEE 163
Query: 49 ---TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78
+R Y E SAK+ + F R
Sbjct: 164 GRDMANRISAFGYLECSAKTKEGVREVFEMATR 196
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 40
F + + +Y+NV W ++ C + PI+L G K+D+++
Sbjct: 82 FSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 121
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 40
F + + +Y+NV W ++ C + PI+L G K+D+++
Sbjct: 88 FSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 127
>pdb|2Z07|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
pdb|2Z07|B Chain B, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
Length = 420
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 19/82 (23%)
Query: 12 NVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 70
N P W + L RV EN+P + R VK ++ E K +Y+
Sbjct: 166 NSPAWDKPLSRVPVENLP--------PYERRDVK----------HVNPEERPRKEDYDRY 207
Query: 71 KPFLYLARKLAGDPNLHFVESP 92
LYL R+L DP + +SP
Sbjct: 208 LSLLYLFRRLEYDPREIYRQSP 229
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVTFHR 52
F + + +++NV W+ ++ C + PI+L G K+D+++ R K +T+ +
Sbjct: 83 FSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQ 142
Query: 53 K-------KNLQYYEISAKSNYNFEKPFLYLARKLAG 82
+++Y E SA + + F R + G
Sbjct: 143 GLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLG 179
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVTFHR 52
F + + +++NV W+ ++ C + PI+L G K+D+++ R K +T+ +
Sbjct: 83 FSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQ 142
Query: 53 K-------KNLQYYEISAKSNYNFEKPFLYLARKLAG 82
+++Y E SA + + F R + G
Sbjct: 143 GLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLG 179
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 22 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHR 52
R CEN + G K+ + + + K FHR
Sbjct: 31 RTCENFRALCTGEKIGSRGKNLHYKNSIFHR 61
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 22 RVCENIPIVLCGNKVDVKNRQVKAKQVTFHR 52
R CEN + G K+ + + + K FHR
Sbjct: 31 RTCENFRALCTGEKIGSRGKNLHYKNSIFHR 61
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV--TFHRKKNL 56
++ + + +++++ + RV E +P++L GNKVD+++ + + +
Sbjct: 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGC 140
Query: 57 QYYEISAKSNYNFEKPFLYLARKL 80
+ E SAKS ++ F + R++
Sbjct: 141 PFMETSAKSKTMVDELFAEIVRQM 164
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 2 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVTFHR 52
F + + +++NV W+ ++ C + PI+L G K+D+++ R K +T+ +
Sbjct: 82 FSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQ 141
Query: 53 K-------KNLQYYEISAKSNYNFEKPF 73
+++Y E SA + + F
Sbjct: 142 GLAMAREIGSVKYLECSALTQRGLKTVF 169
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 10/55 (18%)
Query: 25 ENIPIVLCGNKVDV-KNRQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 73
+++PI+L GNK D+ + R+V +A V F + ++ E SA +N + F
Sbjct: 110 DHVPIILVGNKADLARCREVSVEEGRACAVVF----DCKFIETSATLQHNVAELF 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,595,839
Number of Sequences: 62578
Number of extensions: 118027
Number of successful extensions: 581
Number of sequences better than 100.0: 243
Number of HSP's better than 100.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 113
Number of HSP's that attempted gapping in prelim test: 361
Number of HSP's gapped (non-prelim): 245
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)