Query 032955
Match_columns 130
No_of_seqs 142 out of 1561
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 08:00:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00176 RAN Ran (Ras-relate 99.9 2E-20 4.3E-25 131.3 13.6 126 1-126 74-199 (200)
2 PLN03071 GTP-binding nuclear p 99.9 2.6E-20 5.6E-25 132.2 14.2 127 1-127 92-218 (219)
3 KOG0078 GTP-binding protein SE 99.9 5.3E-21 1.2E-25 132.6 9.5 86 1-86 91-179 (207)
4 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 3.8E-21 8.2E-26 131.4 6.2 126 1-126 89-214 (216)
5 KOG0084 GTPase Rab1/YPT1, smal 99.8 6.8E-20 1.5E-24 125.8 9.7 92 1-92 88-183 (205)
6 cd04121 Rab40 Rab40 subfamily. 99.8 7.6E-19 1.7E-23 122.3 11.2 85 1-85 85-171 (189)
7 KOG0079 GTP-binding protein H- 99.8 1.4E-19 2.9E-24 119.7 6.9 84 1-84 87-172 (198)
8 cd04120 Rab12 Rab12 subfamily. 99.8 2.8E-19 6E-24 125.6 8.7 116 1-123 79-198 (202)
9 KOG0093 GTPase Rab3, small G p 99.8 1.2E-19 2.5E-24 119.9 5.8 87 1-87 100-189 (193)
10 KOG0092 GTPase Rab5/YPT51 and 99.8 3.9E-19 8.5E-24 121.7 8.5 88 1-88 84-174 (200)
11 KOG0098 GTPase Rab2, small G p 99.8 1.8E-19 3.9E-24 123.0 6.8 88 1-88 85-175 (216)
12 PTZ00132 GTP-binding nuclear p 99.8 2.1E-17 4.6E-22 116.6 15.2 127 1-127 88-214 (215)
13 cd04133 Rop_like Rop subfamily 99.8 5.5E-18 1.2E-22 116.7 9.9 81 1-81 79-173 (176)
14 cd01873 RhoBTB RhoBTB subfamil 99.8 4E-18 8.6E-23 119.1 9.3 79 1-79 94-194 (195)
15 KOG0394 Ras-related GTPase [Ge 99.8 4.1E-18 8.9E-23 116.1 9.0 86 1-86 88-183 (210)
16 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 5.9E-18 1.3E-22 117.1 9.7 82 1-82 83-181 (182)
17 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 1.7E-17 3.6E-22 118.9 11.3 83 1-83 91-190 (232)
18 cd04131 Rnd Rnd subfamily. Th 99.7 1.2E-17 2.6E-22 115.1 9.5 81 1-81 79-176 (178)
19 KOG0087 GTPase Rab11/YPT3, sma 99.7 5.9E-18 1.3E-22 117.5 7.7 83 1-83 93-178 (222)
20 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.7 1.9E-17 4.1E-22 113.9 8.2 86 1-86 101-190 (221)
21 KOG0088 GTPase Rab21, small G 99.7 2.4E-17 5.3E-22 110.2 7.9 84 1-84 92-178 (218)
22 KOG0081 GTPase Rab27, small G 99.7 1.9E-17 4.1E-22 110.8 7.2 85 1-85 97-185 (219)
23 PTZ00099 rab6; Provisional 99.7 1.2E-16 2.6E-21 110.1 11.0 86 1-86 59-147 (176)
24 cd01875 RhoG RhoG subfamily. 99.7 8.8E-17 1.9E-21 111.7 10.1 83 1-83 81-179 (191)
25 cd00877 Ran Ran (Ras-related n 99.7 1.3E-16 2.8E-21 108.5 10.5 85 1-85 79-163 (166)
26 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 9E-17 1.9E-21 109.9 9.7 84 1-84 80-167 (172)
27 KOG0091 GTPase Rab39, small G 99.7 4.6E-17 1E-21 109.3 7.9 86 1-86 88-178 (213)
28 cd04103 Centaurin_gamma Centau 99.7 1.2E-16 2.6E-21 108.1 8.6 79 1-79 72-157 (158)
29 KOG0086 GTPase Rab4, small G p 99.7 6.7E-17 1.5E-21 107.6 6.8 91 1-91 88-181 (214)
30 PF00071 Ras: Ras family; Int 99.7 4.6E-16 9.9E-21 104.6 10.4 81 1-81 78-161 (162)
31 cd04122 Rab14 Rab14 subfamily. 99.7 5.2E-16 1.1E-20 105.0 10.3 82 1-82 81-165 (166)
32 cd04134 Rho3 Rho3 subfamily. 99.7 5.9E-16 1.3E-20 107.3 10.5 83 1-83 78-176 (189)
33 KOG0080 GTPase Rab18, small G 99.7 1.2E-16 2.5E-21 107.1 6.5 88 1-88 90-181 (209)
34 cd01874 Cdc42 Cdc42 subfamily. 99.7 4.1E-16 8.9E-21 107.0 9.2 80 1-80 79-174 (175)
35 cd04117 Rab15 Rab15 subfamily. 99.7 5.5E-16 1.2E-20 104.8 9.7 79 1-79 79-160 (161)
36 cd04127 Rab27A Rab27a subfamil 99.7 6.6E-16 1.4E-20 105.6 10.1 83 1-83 93-179 (180)
37 KOG0395 Ras-related GTPase [Ge 99.7 5.4E-16 1.2E-20 108.5 9.7 82 1-82 81-166 (196)
38 cd04126 Rab20 Rab20 subfamily. 99.7 6.6E-16 1.4E-20 109.9 9.9 83 1-83 74-192 (220)
39 cd04128 Spg1 Spg1p. Spg1p (se 99.7 1E-15 2.3E-20 105.7 10.1 85 1-86 79-171 (182)
40 cd04110 Rab35 Rab35 subfamily. 99.7 1.1E-15 2.4E-20 106.8 9.9 88 1-88 85-174 (199)
41 cd01871 Rac1_like Rac1-like su 99.6 1.1E-15 2.3E-20 104.8 9.2 79 1-79 79-173 (174)
42 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 2.2E-15 4.7E-20 107.3 11.1 86 1-86 79-181 (222)
43 cd01865 Rab3 Rab3 subfamily. 99.6 2.5E-15 5.3E-20 101.7 10.5 82 1-82 80-164 (165)
44 KOG0083 GTPase Rab26/Rab37, sm 99.6 2.3E-16 5.1E-21 102.9 5.0 83 1-83 77-162 (192)
45 cd04144 Ras2 Ras2 subfamily. 99.6 3.4E-15 7.3E-20 103.5 11.0 86 1-86 77-168 (190)
46 smart00174 RHO Rho (Ras homolo 99.6 2.2E-15 4.8E-20 102.4 9.8 82 1-82 76-173 (174)
47 cd04109 Rab28 Rab28 subfamily. 99.6 2.8E-15 6E-20 106.0 10.2 83 1-83 80-168 (215)
48 cd04142 RRP22 RRP22 subfamily. 99.6 4E-15 8.7E-20 104.2 10.6 85 1-85 87-178 (198)
49 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 4E-15 8.7E-20 104.0 10.4 85 1-85 80-172 (201)
50 cd01867 Rab8_Rab10_Rab13_like 99.6 5.9E-15 1.3E-19 100.0 10.4 82 1-82 82-166 (167)
51 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 6.5E-15 1.4E-19 99.5 10.2 81 1-81 81-164 (166)
52 cd04140 ARHI_like ARHI subfami 99.6 4.8E-15 1.1E-19 100.3 9.5 79 1-79 79-163 (165)
53 cd04148 RGK RGK subfamily. Th 99.6 1.4E-14 3.1E-19 103.0 12.2 85 1-85 79-167 (221)
54 cd04125 RabA_like RabA-like su 99.6 9.3E-15 2E-19 101.0 11.0 86 1-86 79-167 (188)
55 cd04146 RERG_RasL11_like RERG/ 99.6 5.2E-15 1.1E-19 100.0 9.5 81 1-81 78-164 (165)
56 cd04175 Rap1 Rap1 subgroup. T 99.6 8.2E-15 1.8E-19 98.8 10.0 81 1-81 79-163 (164)
57 cd04106 Rab23_lke Rab23-like s 99.6 7.1E-15 1.5E-19 98.6 9.5 79 1-79 81-161 (162)
58 PTZ00369 Ras-like protein; Pro 99.6 7.5E-15 1.6E-19 101.7 9.8 84 1-84 83-170 (189)
59 cd04136 Rap_like Rap-like subf 99.6 7.9E-15 1.7E-19 98.4 9.6 80 1-80 79-162 (163)
60 cd04112 Rab26 Rab26 subfamily. 99.6 1.8E-14 3.9E-19 100.0 10.9 84 1-84 80-166 (191)
61 cd04111 Rab39 Rab39 subfamily. 99.6 1.4E-14 3E-19 102.3 10.3 84 1-84 82-169 (211)
62 cd04119 RJL RJL (RabJ-Like) su 99.6 1.7E-14 3.6E-19 96.9 10.0 81 1-81 79-167 (168)
63 cd04138 H_N_K_Ras_like H-Ras/N 99.6 1.8E-14 4E-19 96.2 10.0 80 1-80 79-161 (162)
64 cd04129 Rho2 Rho2 subfamily. 99.6 1.8E-14 3.9E-19 99.7 10.1 85 1-85 79-177 (187)
65 cd01868 Rab11_like Rab11-like. 99.6 2E-14 4.4E-19 96.9 10.0 80 1-80 82-164 (165)
66 cd04132 Rho4_like Rho4-like su 99.6 1.5E-14 3.3E-19 99.6 9.5 86 1-86 79-172 (187)
67 PLN03108 Rab family protein; P 99.6 2.5E-14 5.3E-19 100.9 10.7 85 1-85 85-172 (210)
68 cd04124 RabL2 RabL2 subfamily. 99.6 1.9E-14 4.1E-19 97.2 9.7 82 1-83 79-160 (161)
69 cd04101 RabL4 RabL4 (Rab-like4 99.6 2.6E-14 5.7E-19 96.2 10.1 80 1-80 82-163 (164)
70 smart00173 RAS Ras subfamily o 99.6 2.8E-14 6E-19 96.0 10.2 81 1-81 78-162 (164)
71 cd04116 Rab9 Rab9 subfamily. 99.6 2E-14 4.4E-19 97.4 9.6 79 1-79 84-169 (170)
72 KOG0097 GTPase Rab14, small G 99.6 8.5E-15 1.8E-19 96.6 7.2 88 1-88 90-180 (215)
73 cd04176 Rap2 Rap2 subgroup. T 99.6 2.2E-14 4.8E-19 96.5 9.5 80 1-80 79-162 (163)
74 PLN03110 Rab GTPase; Provision 99.6 2.5E-14 5.4E-19 101.3 9.8 83 1-83 91-176 (216)
75 cd04145 M_R_Ras_like M-Ras/R-R 99.6 3.4E-14 7.4E-19 95.4 9.9 80 1-80 80-163 (164)
76 cd01866 Rab2 Rab2 subfamily. 99.6 4.7E-14 1E-18 95.8 10.5 82 1-82 83-167 (168)
77 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 4.3E-14 9.2E-19 96.5 9.7 82 1-82 79-166 (170)
78 cd04118 Rab24 Rab24 subfamily. 99.6 7.2E-14 1.6E-18 96.7 10.9 85 1-85 80-170 (193)
79 cd04115 Rab33B_Rab33A Rab33B/R 99.5 5.2E-14 1.1E-18 95.7 9.6 80 1-80 82-168 (170)
80 cd04130 Wrch_1 Wrch-1 subfamil 99.5 4.9E-14 1.1E-18 96.1 9.2 78 1-78 78-171 (173)
81 cd04135 Tc10 TC10 subfamily. 99.5 6E-14 1.3E-18 95.3 9.4 80 1-80 78-173 (174)
82 cd04113 Rab4 Rab4 subfamily. 99.5 6.3E-14 1.4E-18 94.1 9.4 80 1-80 79-161 (161)
83 cd01864 Rab19 Rab19 subfamily. 99.5 1E-13 2.2E-18 93.6 9.8 79 1-79 82-164 (165)
84 smart00175 RAB Rab subfamily o 99.5 1.5E-13 3.3E-18 92.1 10.2 82 1-82 79-163 (164)
85 KOG0393 Ras-related small GTPa 99.5 6.5E-14 1.4E-18 97.4 7.7 85 1-85 83-183 (198)
86 cd04177 RSR1 RSR1 subgroup. R 99.5 2.7E-13 5.9E-18 91.9 10.0 81 1-81 79-164 (168)
87 cd04139 RalA_RalB RalA/RalB su 99.5 3.6E-13 7.8E-18 90.2 10.4 81 1-81 78-162 (164)
88 cd01863 Rab18 Rab18 subfamily. 99.5 3.5E-13 7.7E-18 90.4 9.8 79 1-79 79-160 (161)
89 cd01870 RhoA_like RhoA-like su 99.5 4.4E-13 9.5E-18 91.1 9.7 80 1-80 79-174 (175)
90 cd04143 Rhes_like Rhes_like su 99.5 4.7E-13 1E-17 96.7 9.9 80 1-80 78-170 (247)
91 cd04158 ARD1 ARD1 subfamily. 99.5 3E-13 6.6E-18 92.0 8.4 85 1-86 73-166 (169)
92 cd01893 Miro1 Miro1 subfamily. 99.5 5.4E-13 1.2E-17 90.3 9.4 82 1-82 77-165 (166)
93 KOG0095 GTPase Rab30, small G 99.5 7.2E-14 1.6E-18 92.9 4.8 82 1-82 86-170 (213)
94 cd04123 Rab21 Rab21 subfamily. 99.5 8.2E-13 1.8E-17 88.2 10.0 80 1-80 79-161 (162)
95 cd01860 Rab5_related Rab5-rela 99.5 9.1E-13 2E-17 88.4 10.1 80 1-80 80-162 (163)
96 cd01861 Rab6 Rab6 subfamily. 99.5 7E-13 1.5E-17 88.8 9.4 79 1-79 79-160 (161)
97 PLN03118 Rab family protein; P 99.4 1.5E-12 3.3E-17 91.6 10.9 84 1-84 92-180 (211)
98 cd04114 Rab30 Rab30 subfamily. 99.4 1.3E-12 2.9E-17 88.2 10.0 80 1-80 86-168 (169)
99 cd01862 Rab7 Rab7 subfamily. 99.4 1.7E-12 3.8E-17 87.7 10.4 83 1-83 79-169 (172)
100 cd01892 Miro2 Miro2 subfamily. 99.4 9.8E-13 2.1E-17 89.6 7.9 80 1-81 84-166 (169)
101 cd04149 Arf6 Arf6 subfamily. 99.4 7.4E-13 1.6E-17 90.2 7.2 78 1-78 83-167 (168)
102 cd00876 Ras Ras family. The R 99.4 2.9E-12 6.3E-17 85.3 9.5 80 1-80 77-160 (160)
103 PLN00223 ADP-ribosylation fact 99.4 2.8E-12 6E-17 88.5 8.4 80 1-83 91-180 (181)
104 cd04162 Arl9_Arfrp2_like Arl9/ 99.4 6.9E-13 1.5E-17 90.0 5.0 77 1-77 74-162 (164)
105 cd04147 Ras_dva Ras-dva subfam 99.4 2.2E-12 4.8E-17 89.9 7.6 81 1-81 77-163 (198)
106 cd04154 Arl2 Arl2 subfamily. 99.4 2.5E-12 5.4E-17 87.6 7.5 78 1-78 88-172 (173)
107 cd04137 RheB Rheb (Ras Homolog 99.4 1.2E-11 2.6E-16 84.6 10.9 85 1-85 79-167 (180)
108 cd04150 Arf1_5_like Arf1-Arf5- 99.3 3.9E-12 8.5E-17 85.8 7.2 78 1-78 74-158 (159)
109 cd01897 NOG NOG1 is a nucleola 99.3 4.2E-12 9.1E-17 85.7 7.3 79 1-80 86-167 (168)
110 cd00157 Rho Rho (Ras homology) 99.3 8.2E-12 1.8E-16 84.3 8.4 78 1-78 78-170 (171)
111 KOG4252 GTP-binding protein [S 99.3 1.4E-12 3E-17 89.1 4.4 83 1-83 99-183 (246)
112 PTZ00133 ADP-ribosylation fact 99.3 9.7E-12 2.1E-16 85.8 8.7 84 1-84 91-181 (182)
113 smart00177 ARF ARF-like small 99.3 9.6E-12 2.1E-16 85.2 8.6 80 1-80 87-173 (175)
114 cd00154 Rab Rab family. Rab G 99.3 1.9E-11 4.1E-16 80.8 9.1 77 1-77 79-158 (159)
115 TIGR00157 ribosome small subun 99.3 5.4E-12 1.2E-16 91.1 6.6 76 1-78 43-120 (245)
116 cd00879 Sar1 Sar1 subfamily. 99.3 1.7E-11 3.8E-16 84.5 7.5 78 1-79 93-189 (190)
117 cd04157 Arl6 Arl6 subfamily. 99.3 1.5E-11 3.4E-16 82.2 7.0 78 1-78 75-161 (162)
118 cd04156 ARLTS1 ARLTS1 subfamil 99.3 1.1E-11 2.3E-16 83.1 5.9 78 1-78 74-159 (160)
119 cd01898 Obg Obg subfamily. Th 99.3 3.2E-11 7E-16 81.4 8.0 79 1-79 85-169 (170)
120 PRK12299 obgE GTPase CgtA; Rev 99.2 3.2E-11 7E-16 90.7 8.3 82 1-82 243-329 (335)
121 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.2 3.7E-11 8E-16 82.8 7.8 81 1-82 82-171 (183)
122 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.2 3E-11 6.4E-16 82.6 7.2 78 1-78 89-173 (174)
123 TIGR02528 EutP ethanolamine ut 99.2 2.3E-11 5.1E-16 80.1 6.0 71 1-77 69-141 (142)
124 cd04160 Arfrp1 Arfrp1 subfamil 99.2 6.5E-11 1.4E-15 79.8 7.4 78 1-78 80-166 (167)
125 cd00878 Arf_Arl Arf (ADP-ribos 99.2 1.8E-10 3.9E-15 77.0 8.1 78 1-78 73-157 (158)
126 cd01890 LepA LepA subfamily. 99.2 1.4E-10 3.1E-15 79.0 7.5 77 1-80 97-176 (179)
127 cd04151 Arl1 Arl1 subfamily. 99.1 2.6E-10 5.6E-15 76.4 8.0 78 1-78 73-157 (158)
128 cd04161 Arl2l1_Arl13_like Arl2 99.1 1.1E-10 2.4E-15 79.3 5.3 78 1-78 73-166 (167)
129 TIGR02729 Obg_CgtA Obg family 99.1 3.9E-10 8.4E-15 84.7 8.3 80 1-80 242-328 (329)
130 cd01878 HflX HflX subfamily. 99.1 7.7E-10 1.7E-14 77.2 7.4 76 1-79 127-203 (204)
131 cd04102 RabL3 RabL3 (Rab-like3 99.0 9.4E-10 2E-14 77.4 7.1 67 1-67 84-176 (202)
132 cd04155 Arl3 Arl3 subfamily. 99.0 1.9E-09 4.2E-14 73.0 8.1 75 1-78 88-172 (173)
133 smart00178 SAR Sar1p-like memb 99.0 1.7E-09 3.7E-14 74.6 7.3 78 1-79 91-183 (184)
134 PRK15467 ethanolamine utilizat 99.0 1.8E-09 3.8E-14 73.0 5.9 76 1-82 71-148 (158)
135 cd04159 Arl10_like Arl10-like 99.0 4.8E-09 1E-13 69.2 7.9 78 1-78 74-158 (159)
136 PRK04213 GTP-binding protein; 99.0 1.7E-09 3.7E-14 75.2 5.9 57 25-83 129-194 (201)
137 PRK12297 obgE GTPase CgtA; Rev 98.9 8.1E-09 1.7E-13 79.9 9.7 82 1-84 243-330 (424)
138 cd01879 FeoB Ferrous iron tran 98.9 7.3E-09 1.6E-13 68.8 7.7 75 1-80 81-156 (158)
139 KOG3883 Ras family small GTPas 98.9 2.2E-08 4.7E-13 67.2 8.3 82 1-82 91-176 (198)
140 cd01881 Obg_like The Obg-like 98.9 7.9E-09 1.7E-13 69.8 6.3 79 1-79 81-175 (176)
141 TIGR03156 GTP_HflX GTP-binding 98.8 2.1E-08 4.6E-13 76.0 8.5 75 1-79 275-350 (351)
142 cd00882 Ras_like_GTPase Ras-li 98.8 5.1E-08 1.1E-12 63.0 8.5 77 1-77 75-156 (157)
143 cd01854 YjeQ_engC YjeQ/EngC. 98.8 1.4E-08 3.1E-13 74.9 6.3 76 1-78 85-161 (287)
144 PF00025 Arf: ADP-ribosylation 98.8 4E-08 8.6E-13 67.4 7.9 80 1-80 88-175 (175)
145 KOG4423 GTP-binding protein-li 98.8 1.8E-08 4E-13 69.4 6.0 84 1-84 105-197 (229)
146 PRK12298 obgE GTPase CgtA; Rev 98.8 1.4E-07 3.1E-12 72.4 11.3 83 1-83 244-335 (390)
147 PRK11058 GTPase HflX; Provisio 98.8 6.2E-08 1.3E-12 75.1 9.1 79 1-82 283-363 (426)
148 PRK12296 obgE GTPase CgtA; Rev 98.7 4.1E-08 9E-13 77.2 7.8 83 1-83 243-342 (500)
149 TIGR00436 era GTP-binding prot 98.7 6.4E-08 1.4E-12 70.7 8.2 79 1-83 86-166 (270)
150 PRK12289 GTPase RsgA; Reviewed 98.7 3.3E-08 7.2E-13 74.9 6.7 77 1-79 96-173 (352)
151 PRK12288 GTPase RsgA; Reviewed 98.7 5.3E-08 1.2E-12 73.7 7.7 77 1-79 127-206 (347)
152 PRK03003 GTP-binding protein D 98.7 3E-08 6.6E-13 77.7 6.6 78 1-81 300-382 (472)
153 PRK00098 GTPase RsgA; Reviewed 98.7 2.2E-08 4.7E-13 74.3 5.4 76 1-78 87-164 (298)
154 TIGR00231 small_GTP small GTP- 98.7 8.3E-08 1.8E-12 62.8 7.5 75 2-76 81-159 (161)
155 cd04171 SelB SelB subfamily. 98.7 9.3E-08 2E-12 63.8 7.7 52 27-78 105-163 (164)
156 TIGR00437 feoB ferrous iron tr 98.7 4.4E-08 9.6E-13 78.7 6.7 56 25-80 98-154 (591)
157 TIGR00450 mnmE_trmE_thdF tRNA 98.7 6E-08 1.3E-12 75.6 6.9 74 1-83 289-362 (442)
158 TIGR01393 lepA GTP-binding pro 98.7 8.2E-08 1.8E-12 77.3 7.4 79 1-82 100-181 (595)
159 PLN00023 GTP-binding protein; 98.7 7.6E-08 1.6E-12 72.1 6.5 56 1-56 113-189 (334)
160 cd01855 YqeH YqeH. YqeH is an 98.6 1E-07 2.2E-12 66.0 6.7 77 1-82 41-126 (190)
161 cd04164 trmE TrmE (MnmE, ThdF, 98.6 9.1E-08 2E-12 63.2 5.8 70 1-80 87-156 (157)
162 KOG1673 Ras GTPases [General f 98.6 2.1E-07 4.6E-12 62.6 7.4 83 1-83 99-188 (205)
163 cd01894 EngA1 EngA1 subfamily. 98.6 1.3E-07 2.8E-12 62.6 6.4 51 26-79 105-156 (157)
164 PRK05291 trmE tRNA modificatio 98.6 8.1E-08 1.7E-12 75.0 5.6 71 1-82 301-371 (449)
165 PRK15494 era GTPase Era; Provi 98.6 1.3E-07 2.9E-12 71.3 6.5 75 7-84 142-219 (339)
166 cd01895 EngA2 EngA2 subfamily. 98.6 3.8E-07 8.2E-12 61.0 7.4 76 1-79 91-173 (174)
167 KOG1707 Predicted Ras related/ 98.6 5.4E-08 1.2E-12 76.8 3.5 86 1-86 86-180 (625)
168 TIGR03597 GTPase_YqeH ribosome 98.5 2.1E-07 4.6E-12 70.7 6.5 66 14-79 78-151 (360)
169 PRK03003 GTP-binding protein D 98.5 3.5E-07 7.6E-12 71.8 7.3 76 1-82 124-200 (472)
170 TIGR03594 GTPase_EngA ribosome 98.5 5.1E-07 1.1E-11 69.8 7.9 78 1-81 261-344 (429)
171 cd01887 IF2_eIF5B IF2/eIF5B (i 98.5 1.1E-06 2.3E-11 58.9 8.2 57 25-81 101-166 (168)
172 cd01888 eIF2_gamma eIF2-gamma 98.5 7.2E-07 1.6E-11 62.5 7.4 56 27-82 138-200 (203)
173 cd01859 MJ1464 MJ1464. This f 98.5 4.9E-07 1.1E-11 60.7 6.3 58 25-82 40-97 (156)
174 COG1100 GTPase SAR1 and relate 98.5 1.5E-06 3.3E-11 61.0 8.8 84 1-84 84-188 (219)
175 cd01889 SelB_euk SelB subfamil 98.5 8.9E-07 1.9E-11 61.3 7.2 56 26-81 120-186 (192)
176 PF02421 FeoB_N: Ferrous iron 98.4 2.8E-07 6E-12 62.4 4.3 52 25-76 104-156 (156)
177 PRK05433 GTP-binding protein L 98.4 8.6E-07 1.9E-11 71.5 7.6 79 1-82 104-185 (600)
178 cd00881 GTP_translation_factor 98.4 2.6E-06 5.6E-11 58.0 7.6 56 25-80 113-186 (189)
179 cd00880 Era_like Era (E. coli 98.3 1.6E-06 3.6E-11 56.6 6.0 55 25-79 103-162 (163)
180 KOG0073 GTP-binding ADP-ribosy 98.3 4.2E-06 9.1E-11 56.7 7.8 82 1-82 90-179 (185)
181 cd01891 TypA_BipA TypA (tyrosi 98.3 2.4E-06 5.2E-11 59.2 6.9 69 1-72 95-173 (194)
182 PRK13796 GTPase YqeH; Provisio 98.3 2.7E-06 5.9E-11 64.9 7.0 66 14-79 84-157 (365)
183 PRK00454 engB GTP-binding prot 98.3 3.6E-06 7.8E-11 58.0 6.9 57 25-81 134-194 (196)
184 TIGR00475 selB selenocysteine- 98.3 4.4E-06 9.4E-11 67.3 7.8 77 1-83 80-168 (581)
185 PRK09518 bifunctional cytidyla 98.2 4.1E-06 8.9E-11 68.9 7.7 79 1-82 539-622 (712)
186 cd04163 Era Era subfamily. Er 98.2 4.9E-06 1.1E-10 55.0 6.6 54 26-79 111-167 (168)
187 PRK00089 era GTPase Era; Revie 98.2 5.9E-06 1.3E-10 60.9 7.6 59 25-83 112-173 (292)
188 cd01849 YlqF_related_GTPase Yl 98.2 4.1E-06 8.9E-11 56.2 5.9 78 1-80 6-84 (155)
189 KOG0076 GTP-binding ADP-ribosy 98.2 2.8E-06 6.2E-11 58.1 4.8 83 1-83 99-189 (197)
190 PRK00093 GTP-binding protein D 98.2 7.1E-06 1.5E-10 63.6 7.6 78 1-81 262-344 (435)
191 cd01876 YihA_EngB The YihA (En 98.2 1.1E-05 2.3E-10 53.5 7.0 54 26-79 110-169 (170)
192 cd01896 DRG The developmentall 98.2 7.5E-06 1.6E-10 58.7 6.6 51 25-80 175-225 (233)
193 PF00009 GTP_EFTU: Elongation 98.2 6.1E-06 1.3E-10 57.0 5.9 57 25-81 121-187 (188)
194 PRK00093 GTP-binding protein D 98.1 1.3E-05 2.8E-10 62.2 7.7 51 26-79 109-160 (435)
195 KOG0070 GTP-binding ADP-ribosy 98.1 9.9E-06 2.1E-10 55.7 6.2 82 1-82 91-179 (181)
196 COG2262 HflX GTPases [General 98.1 2.2E-05 4.8E-10 60.1 8.6 82 1-85 278-360 (411)
197 PRK09554 feoB ferrous iron tra 98.1 1.4E-05 3E-10 66.2 7.5 75 1-80 92-167 (772)
198 KOG1489 Predicted GTP-binding 98.1 1.9E-05 4E-10 58.9 7.0 77 1-78 281-364 (366)
199 TIGR03594 GTPase_EngA ribosome 98.0 2.9E-05 6.3E-10 60.0 8.1 54 26-82 107-161 (429)
200 PRK09518 bifunctional cytidyla 98.0 2.1E-05 4.5E-10 64.8 7.6 75 1-82 361-437 (712)
201 PF10662 PduV-EutP: Ethanolami 98.0 2.1E-05 4.5E-10 52.5 6.2 52 26-77 89-142 (143)
202 CHL00189 infB translation init 98.0 1.9E-05 4.2E-10 65.0 7.0 56 25-80 346-409 (742)
203 TIGR00487 IF-2 translation ini 98.0 2.4E-05 5.2E-10 63.1 7.2 53 25-78 186-247 (587)
204 cd01858 NGP_1 NGP-1. Autoanti 98.0 1.9E-05 4E-10 53.1 5.4 56 25-80 38-94 (157)
205 cd01857 HSR1_MMR1 HSR1/MMR1. 98.0 9.2E-06 2E-10 53.7 3.9 65 1-68 18-84 (141)
206 PRK04000 translation initiatio 97.9 7.9E-05 1.7E-09 57.7 8.8 55 27-81 140-201 (411)
207 TIGR03598 GTPase_YsxC ribosome 97.9 2.1E-05 4.6E-10 53.8 5.0 46 25-70 128-179 (179)
208 COG0481 LepA Membrane GTPase L 97.9 5.5E-05 1.2E-09 59.2 7.5 58 25-82 127-187 (603)
209 cd01856 YlqF YlqF. Proteins o 97.9 3E-05 6.5E-10 52.9 5.6 57 25-81 45-101 (171)
210 PRK05306 infB translation init 97.9 3.6E-05 7.7E-10 63.9 6.9 55 25-79 388-450 (787)
211 KOG0075 GTP-binding ADP-ribosy 97.9 6.2E-05 1.3E-09 50.4 6.6 77 1-80 95-181 (186)
212 smart00010 small_GTPase Small 97.9 2.4E-06 5.1E-11 54.4 -0.2 62 1-70 53-115 (124)
213 TIGR03680 eif2g_arch translati 97.9 6.2E-05 1.3E-09 58.2 7.0 55 27-81 135-196 (406)
214 TIGR00073 hypB hydrogenase acc 97.8 3.5E-05 7.7E-10 54.2 5.1 54 26-79 148-205 (207)
215 TIGR00101 ureG urease accessor 97.8 5.3E-05 1.2E-09 53.2 5.9 52 30-81 141-196 (199)
216 KOG0462 Elongation factor-type 97.8 5.5E-05 1.2E-09 59.9 6.3 57 25-81 176-235 (650)
217 TIGR00491 aIF-2 translation in 97.8 9.4E-05 2E-09 59.7 7.6 24 56-79 191-214 (590)
218 PRK10512 selenocysteinyl-tRNA- 97.8 0.00014 3E-09 59.1 8.3 56 26-81 103-166 (614)
219 TIGR00483 EF-1_alpha translati 97.8 4.2E-05 9E-10 59.4 5.2 74 1-74 115-200 (426)
220 COG1162 Predicted GTPases [Gen 97.7 0.00014 3.1E-09 53.9 6.9 77 2-80 87-166 (301)
221 TIGR03596 GTPase_YlqF ribosome 97.7 0.00011 2.5E-09 53.9 5.8 58 25-82 47-104 (276)
222 TIGR01394 TypA_BipA GTP-bindin 97.7 0.00011 2.5E-09 59.4 6.2 79 1-82 94-192 (594)
223 KOG0072 GTP-binding ADP-ribosy 97.7 0.00013 2.9E-09 48.7 5.4 82 1-82 92-180 (182)
224 PRK01889 GTPase RsgA; Reviewed 97.7 0.00018 4E-09 54.8 6.9 73 2-77 120-193 (356)
225 COG0536 Obg Predicted GTPase [ 97.6 0.00023 4.9E-09 53.6 6.8 75 10-84 256-336 (369)
226 PRK13768 GTPase; Provisional 97.6 0.00028 6E-09 51.3 7.1 59 25-83 161-249 (253)
227 cd04165 GTPBP1_like GTPBP1-lik 97.6 0.0003 6.5E-09 50.2 7.1 53 25-77 137-219 (224)
228 COG0532 InfB Translation initi 97.6 0.00034 7.4E-09 55.2 7.2 56 25-80 106-169 (509)
229 PRK12317 elongation factor 1-a 97.6 0.00012 2.6E-09 56.9 4.6 48 27-74 140-198 (425)
230 PRK09563 rbgA GTPase YlqF; Rev 97.5 0.00025 5.4E-09 52.4 5.5 57 26-82 51-107 (287)
231 PRK14845 translation initiatio 97.5 0.00051 1.1E-08 58.7 7.6 25 56-80 648-672 (1049)
232 PRK04004 translation initiatio 97.4 0.0009 2E-08 54.2 8.0 23 56-78 193-215 (586)
233 COG2229 Predicted GTPase [Gene 97.3 0.0013 2.9E-08 45.4 7.1 76 2-79 99-176 (187)
234 cd01883 EF1_alpha Eukaryotic e 97.3 0.00033 7.2E-09 49.6 4.1 45 26-70 137-194 (219)
235 cd04166 CysN_ATPS CysN_ATPS su 97.3 0.00069 1.5E-08 47.6 5.3 46 27-72 131-185 (208)
236 PRK09866 hypothetical protein; 97.2 0.002 4.4E-08 52.6 7.9 53 26-78 289-350 (741)
237 COG0370 FeoB Fe2+ transport sy 97.2 0.0013 2.8E-08 53.5 6.7 60 25-84 107-167 (653)
238 COG4917 EutP Ethanolamine util 97.2 0.0016 3.4E-08 42.7 5.7 52 27-79 91-144 (148)
239 PTZ00327 eukaryotic translatio 97.2 0.0019 4.2E-08 50.9 7.2 55 27-81 172-233 (460)
240 cd04105 SR_beta Signal recogni 97.2 0.0022 4.8E-08 44.9 6.8 40 1-40 79-123 (203)
241 KOG1707 Predicted Ras related/ 97.1 0.002 4.3E-08 51.6 6.8 79 1-81 502-583 (625)
242 COG0486 ThdF Predicted GTPase 97.1 0.0015 3.2E-08 51.0 6.0 56 25-83 323-378 (454)
243 COG0378 HypB Ni2+-binding GTPa 97.1 0.0012 2.5E-08 46.3 4.9 51 30-80 146-200 (202)
244 KOG0071 GTP-binding ADP-ribosy 97.1 0.00087 1.9E-08 44.7 3.8 79 2-80 92-177 (180)
245 KOG1145 Mitochondrial translat 97.0 0.005 1.1E-07 49.3 8.4 55 25-79 252-314 (683)
246 COG1159 Era GTPase [General fu 97.0 0.0027 5.8E-08 47.1 6.2 61 25-85 113-176 (298)
247 PRK10218 GTP-binding protein; 96.9 0.0048 1E-07 50.3 7.5 57 25-81 119-195 (607)
248 TIGR00750 lao LAO/AO transport 96.8 0.0042 9E-08 46.2 6.0 56 26-81 172-238 (300)
249 COG1160 Predicted GTPases [Gen 96.8 0.0073 1.6E-07 47.1 7.2 53 25-81 111-165 (444)
250 PRK10463 hydrogenase nickel in 96.8 0.0035 7.7E-08 46.5 5.3 53 27-79 231-287 (290)
251 PRK09435 membrane ATPase/prote 96.7 0.0041 8.9E-08 47.0 5.4 54 29-82 197-261 (332)
252 PLN00043 elongation factor 1-a 96.6 0.0011 2.3E-08 52.1 1.6 47 25-71 143-203 (447)
253 PRK12736 elongation factor Tu; 96.6 0.0093 2E-07 46.0 6.7 56 26-81 127-201 (394)
254 cd01884 EF_Tu EF-Tu subfamily. 96.5 0.016 3.5E-07 40.5 7.0 44 26-69 117-171 (195)
255 KOG1490 GTP-binding protein CR 96.5 0.011 2.3E-07 47.0 6.6 67 15-81 270-341 (620)
256 COG1160 Predicted GTPases [Gen 96.5 0.021 4.5E-07 44.7 8.1 57 25-81 288-351 (444)
257 KOG3905 Dynein light intermedi 96.5 0.0063 1.4E-07 46.1 5.0 57 26-82 222-291 (473)
258 PF06858 NOG1: Nucleolar GTP-b 96.4 0.0067 1.5E-07 34.2 3.7 36 2-37 21-58 (58)
259 KOG1532 GTPase XAB1, interacts 96.4 0.048 1E-06 40.5 8.9 58 25-82 180-265 (366)
260 KOG1423 Ras-like GTPase ERA [C 96.3 0.012 2.5E-07 44.3 5.6 26 58-83 248-273 (379)
261 COG1084 Predicted GTPase [Gene 96.1 0.022 4.9E-07 42.9 6.1 80 2-82 255-337 (346)
262 COG1163 DRG Predicted GTPase [ 96.1 0.035 7.7E-07 41.9 7.1 50 26-80 239-288 (365)
263 TIGR00485 EF-Tu translation el 96.0 0.027 5.8E-07 43.5 6.6 42 26-67 127-179 (394)
264 COG5257 GCD11 Translation init 96.0 0.011 2.4E-07 44.7 4.2 61 26-86 140-207 (415)
265 cd04104 p47_IIGP_like p47 (47- 95.9 0.04 8.6E-07 38.3 6.6 73 10-84 92-187 (197)
266 cd01899 Ygr210 Ygr210 subfamil 95.9 0.03 6.6E-07 42.1 6.4 60 25-86 213-274 (318)
267 cd04167 Snu114p Snu114p subfam 95.9 0.019 4.1E-07 40.4 4.9 36 1-39 101-136 (213)
268 PRK12740 elongation factor G; 95.9 0.032 6.9E-07 45.9 6.9 27 56-82 237-263 (668)
269 TIGR02034 CysN sulfate adenyly 95.9 0.022 4.7E-07 44.2 5.5 47 26-72 133-188 (406)
270 PRK12735 elongation factor Tu; 95.8 0.029 6.3E-07 43.3 6.0 56 25-80 126-202 (396)
271 PRK13351 elongation factor G; 95.7 0.046 1E-06 45.1 7.2 27 56-82 253-279 (687)
272 cd04168 TetM_like Tet(M)-like 95.7 0.079 1.7E-06 38.1 7.5 25 56-80 210-234 (237)
273 KOG0077 Vesicle coat complex C 95.5 0.023 5.1E-07 38.9 3.9 78 2-79 95-191 (193)
274 PRK05124 cysN sulfate adenylyl 95.4 0.02 4.3E-07 45.4 3.8 46 27-72 161-216 (474)
275 COG0218 Predicted GTPase [Gene 95.4 0.073 1.6E-06 37.4 6.1 57 25-81 134-197 (200)
276 PF05783 DLIC: Dynein light in 95.4 0.049 1.1E-06 43.2 5.9 58 26-83 196-266 (472)
277 PRK05506 bifunctional sulfate 95.1 0.058 1.3E-06 44.2 5.8 46 26-71 157-211 (632)
278 PRK00741 prfC peptide chain re 94.8 0.17 3.6E-06 40.8 7.4 27 56-82 249-275 (526)
279 PF03308 ArgK: ArgK protein; 94.8 0.044 9.6E-07 40.1 3.8 53 28-80 169-229 (266)
280 CHL00071 tufA elongation facto 94.5 0.15 3.2E-06 39.7 6.4 45 25-69 126-181 (409)
281 PF03029 ATP_bind_1: Conserved 94.3 0.058 1.3E-06 38.9 3.5 55 26-80 156-236 (238)
282 COG1703 ArgK Putative periplas 94.2 0.079 1.7E-06 39.7 4.1 56 27-82 190-255 (323)
283 PRK09602 translation-associate 94.0 0.13 2.7E-06 40.0 5.1 58 25-84 216-274 (396)
284 KOG0705 GTPase-activating prot 93.9 0.083 1.8E-06 42.7 3.8 82 1-82 102-190 (749)
285 PRK13505 formate--tetrahydrofo 93.7 0.81 1.8E-05 37.0 9.1 71 9-81 357-429 (557)
286 COG3276 SelB Selenocysteine-sp 93.5 0.23 4.9E-06 38.9 5.6 57 25-81 102-162 (447)
287 PRK00049 elongation factor Tu; 93.4 0.36 7.8E-06 37.4 6.6 55 25-79 126-201 (396)
288 KOG0074 GTP-binding ADP-ribosy 93.4 0.081 1.8E-06 35.5 2.6 79 1-79 92-177 (185)
289 cd01885 EF2 EF2 (for archaea a 93.3 0.097 2.1E-06 37.4 3.1 36 1-39 103-138 (222)
290 PLN03126 Elongation factor Tu; 93.1 0.23 4.9E-06 39.6 5.3 45 25-69 195-250 (478)
291 PF04670 Gtr1_RagA: Gtr1/RagA 93.1 0.47 1E-05 34.2 6.5 80 1-81 83-176 (232)
292 COG2895 CysN GTPases - Sulfate 92.5 0.14 3E-06 39.3 3.2 45 26-70 139-192 (431)
293 cd04169 RF3 RF3 subfamily. Pe 92.4 0.52 1.1E-05 34.6 6.0 16 25-40 122-137 (267)
294 PTZ00141 elongation factor 1- 92.2 0.25 5.3E-06 39.0 4.3 46 26-71 144-203 (446)
295 COG1161 Predicted GTPases [Gen 91.7 0.35 7.7E-06 36.4 4.5 49 25-73 60-109 (322)
296 PRK12739 elongation factor G; 91.6 1 2.2E-05 37.5 7.3 26 57-82 254-279 (691)
297 KOG0466 Translation initiation 91.5 0.16 3.6E-06 38.3 2.5 65 27-91 180-251 (466)
298 cd04170 EF-G_bact Elongation f 91.5 0.73 1.6E-05 33.5 5.9 57 25-81 115-173 (268)
299 cd04178 Nucleostemin_like Nucl 91.4 0.37 7.9E-06 33.0 4.0 16 25-40 29-44 (172)
300 cd00066 G-alpha G protein alph 91.3 1 2.2E-05 33.9 6.6 59 25-83 227-313 (317)
301 PLN03127 Elongation factor Tu; 90.8 1.1 2.5E-05 35.3 6.7 56 25-80 175-251 (447)
302 KOG0090 Signal recognition par 90.5 1.9 4.1E-05 31.0 6.9 23 56-79 215-237 (238)
303 KOG4273 Uncharacterized conser 90.2 0.45 9.8E-06 35.1 3.7 81 1-82 85-223 (418)
304 cd01850 CDC_Septin CDC/Septin. 89.9 0.48 1E-05 34.9 3.8 44 20-63 137-184 (276)
305 KOG1424 Predicted GTP-binding 89.7 0.44 9.4E-06 38.2 3.5 39 26-65 205-244 (562)
306 TIGR00484 EF-G translation elo 89.4 0.98 2.1E-05 37.5 5.5 16 25-40 126-141 (689)
307 smart00275 G_alpha G protein a 88.9 2.1 4.5E-05 32.6 6.6 27 56-82 309-335 (342)
308 cd01886 EF-G Elongation factor 88.3 1.5 3.4E-05 32.1 5.4 42 25-66 115-160 (270)
309 PF09439 SRPRB: Signal recogni 88.1 0.84 1.8E-05 31.7 3.7 39 2-40 83-126 (181)
310 KOG2423 Nucleolar GTPase [Gene 87.7 3.3 7.1E-05 32.7 7.0 59 21-79 239-298 (572)
311 KOG0463 GTP-binding protein GP 87.3 1.4 2.9E-05 34.5 4.7 48 26-73 273-350 (641)
312 COG1217 TypA Predicted membran 86.4 2 4.3E-05 34.4 5.2 58 25-82 119-196 (603)
313 KOG2485 Conserved ATP/GTP bind 86.1 1.4 3.1E-05 33.3 4.1 56 23-78 70-128 (335)
314 TIGR02836 spore_IV_A stage IV 84.9 4.1 8.8E-05 32.4 6.3 62 14-78 170-234 (492)
315 PF03193 DUF258: Protein of un 84.8 2.5 5.5E-05 28.8 4.6 31 48-78 5-35 (161)
316 KOG0410 Predicted GTP binding 84.5 1.9 4E-05 33.1 4.1 74 1-82 264-342 (410)
317 COG5258 GTPBP1 GTPase [General 84.0 2.2 4.7E-05 33.5 4.4 55 26-81 255-338 (527)
318 KOG1144 Translation initiation 83.5 1.5 3.2E-05 37.1 3.5 25 57-81 663-687 (1064)
319 COG5256 TEF1 Translation elong 83.4 1.7 3.7E-05 34.0 3.7 47 26-72 145-202 (428)
320 KOG0461 Selenocysteine-specifi 82.0 3.3 7.2E-05 32.1 4.7 56 27-82 123-194 (522)
321 PF09419 PGP_phosphatase: Mito 81.3 15 0.00032 25.2 8.5 66 11-76 62-127 (168)
322 KOG2484 GTPase [General functi 81.1 5.6 0.00012 31.2 5.7 42 25-66 176-218 (435)
323 PF08477 Miro: Miro-like prote 80.6 2.1 4.5E-05 26.5 2.8 22 1-22 80-101 (119)
324 KOG1191 Mitochondrial GTPase [ 80.5 2.1 4.5E-05 34.3 3.2 60 26-85 389-454 (531)
325 TIGR00503 prfC peptide chain r 80.2 3.3 7.1E-05 33.5 4.4 16 25-40 131-146 (527)
326 PRK00007 elongation factor G; 77.6 6.1 0.00013 33.0 5.3 42 25-66 126-171 (693)
327 cd00477 FTHFS Formyltetrahydro 73.7 45 0.00097 27.2 8.9 70 9-81 341-413 (524)
328 KOG0458 Elongation factor 1 al 73.5 4.3 9.2E-05 33.2 3.3 48 25-72 314-373 (603)
329 cd03110 Fer4_NifH_child This p 73.5 17 0.00037 24.3 6.0 49 9-60 128-176 (179)
330 KOG2486 Predicted GTPase [Gene 73.4 1.7 3.6E-05 32.5 1.0 54 25-78 247-313 (320)
331 COG1149 MinD superfamily P-loo 72.7 13 0.00028 27.7 5.4 45 9-59 199-243 (284)
332 PF14331 ImcF-related_N: ImcF- 71.7 13 0.00028 27.2 5.3 58 25-82 68-132 (266)
333 PRK13507 formate--tetrahydrofo 71.3 42 0.00092 27.6 8.3 70 10-81 387-458 (587)
334 cd01882 BMS1 Bms1. Bms1 is an 68.6 18 0.00038 25.7 5.3 44 26-69 132-184 (225)
335 PTZ00258 GTP-binding protein; 67.7 7.1 0.00015 30.4 3.3 43 25-67 219-266 (390)
336 COG2759 MIS1 Formyltetrahydrof 67.5 60 0.0013 26.2 8.3 71 9-82 354-427 (554)
337 cd04170 EF-G_bact Elongation f 67.2 5.6 0.00012 28.9 2.6 26 56-81 241-266 (268)
338 KOG1143 Predicted translation 65.5 13 0.00028 29.3 4.3 47 26-72 303-379 (591)
339 COG0050 TufB GTPases - transla 63.2 19 0.00042 27.4 4.7 39 26-64 127-176 (394)
340 COG0012 Predicted GTPase, prob 59.0 27 0.00058 27.1 5.0 41 25-65 205-248 (372)
341 cd01852 AIG1 AIG1 (avrRpt2-ind 58.5 56 0.0012 22.3 8.1 57 27-83 117-186 (196)
342 PF08438 MMR_HSR1_C: GTPase of 57.9 11 0.00023 24.0 2.3 30 32-64 1-32 (109)
343 PRK07560 elongation factor EF- 56.3 35 0.00075 28.8 5.6 14 26-39 139-152 (731)
344 PLN02759 Formate--tetrahydrofo 55.6 79 0.0017 26.4 7.3 69 10-81 436-508 (637)
345 PF01268 FTHFS: Formate--tetra 55.4 15 0.00031 30.1 3.1 70 9-80 356-427 (557)
346 PRK13506 formate--tetrahydrofo 54.6 1.2E+02 0.0027 25.0 9.1 70 10-81 379-451 (578)
347 PRK09601 GTP-binding protein Y 52.0 19 0.00041 27.9 3.2 42 25-66 198-242 (364)
348 KOG0085 G protein subunit Galp 51.0 58 0.0013 24.1 5.3 59 25-83 265-351 (359)
349 cd01886 EF-G Elongation factor 50.8 15 0.00032 27.0 2.4 26 56-81 243-268 (270)
350 cd04169 RF3 RF3 subfamily. Pe 50.0 15 0.00033 26.9 2.4 26 56-81 240-265 (267)
351 cd02067 B12-binding B12 bindin 46.3 29 0.00064 21.7 3.0 52 2-61 56-108 (119)
352 PTZ00386 formyl tetrahydrofola 44.8 1.9E+02 0.004 24.3 8.7 70 10-82 423-497 (625)
353 KOG3886 GTP-binding protein [S 44.2 42 0.00091 24.8 3.8 40 1-40 88-130 (295)
354 KOG1487 GTP-binding protein DR 43.8 44 0.00095 25.1 3.9 49 26-79 231-279 (358)
355 KOG0460 Mitochondrial translat 43.0 29 0.00064 27.0 3.0 37 27-63 171-217 (449)
356 KOG1486 GTP-binding protein DR 42.6 1.1E+02 0.0023 23.1 5.6 50 25-80 237-287 (364)
357 smart00053 DYNc Dynamin, GTPas 42.3 36 0.00077 24.7 3.3 15 26-40 192-206 (240)
358 KOG0082 G-protein alpha subuni 41.7 38 0.00081 26.2 3.4 59 25-83 261-346 (354)
359 PRK05264 transcriptional repre 41.5 26 0.00055 21.6 2.0 23 104-126 53-76 (105)
360 PLN00116 translation elongatio 41.0 26 0.00056 30.1 2.7 15 25-39 149-163 (843)
361 cd00490 Met_repressor_MetJ Met 40.8 28 0.0006 21.3 2.1 23 104-126 52-75 (103)
362 TIGR00490 aEF-2 translation el 40.5 23 0.00051 29.8 2.3 15 25-39 137-151 (720)
363 TIGR00503 prfC peptide chain r 39.8 29 0.00062 28.2 2.7 28 56-83 250-277 (527)
364 COG4502 5'(3')-deoxyribonucleo 39.3 34 0.00073 23.1 2.5 32 6-37 95-126 (180)
365 COG0523 Putative GTPases (G3E 38.2 63 0.0014 24.6 4.1 34 30-63 149-184 (323)
366 PRK10416 signal recognition pa 37.9 58 0.0013 24.6 3.9 42 28-73 261-302 (318)
367 COG1908 FrhD Coenzyme F420-red 37.9 84 0.0018 20.5 4.1 58 26-83 54-124 (132)
368 PF10881 DUF2726: Protein of u 37.5 81 0.0018 20.0 4.1 30 49-78 95-124 (126)
369 PF10161 DDDD: Putative mitoch 36.6 17 0.00037 21.7 0.7 18 111-128 61-78 (79)
370 PF07905 PucR: Purine cataboli 36.4 1.1E+02 0.0025 19.3 7.9 38 41-80 85-122 (123)
371 PRK05428 HPr kinase/phosphoryl 36.4 1.8E+02 0.004 22.0 6.3 52 25-81 81-132 (308)
372 PF02603 Hpr_kinase_N: HPr Ser 36.1 68 0.0015 20.6 3.6 35 25-64 80-114 (127)
373 cd03362 TOPRIM_TopoIA_TopoIII 35.7 67 0.0014 21.2 3.6 51 25-75 97-150 (151)
374 PTZ00416 elongation factor 2; 35.6 29 0.00062 29.9 2.1 15 25-39 143-157 (836)
375 PF11111 CENP-M: Centromere pr 34.6 1.6E+02 0.0034 20.5 7.0 80 1-80 71-152 (176)
376 PF03709 OKR_DC_1_N: Orn/Lys/A 33.1 89 0.0019 19.6 3.7 28 9-36 50-77 (115)
377 COG2179 Predicted hydrolase of 33.1 1.1E+02 0.0023 21.2 4.2 46 7-61 45-90 (175)
378 COG4359 Uncharacterized conser 32.8 87 0.0019 22.2 3.8 32 47-78 81-112 (220)
379 cd03363 TOPRIM_TopoIA_TopoI TO 32.6 67 0.0015 20.6 3.1 51 25-75 71-122 (123)
380 PRK14974 cell division protein 32.3 86 0.0019 24.0 4.1 42 29-74 282-323 (336)
381 PF01340 MetJ: Met Apo-repress 31.4 30 0.00066 21.2 1.2 23 104-126 52-75 (104)
382 PF07764 Omega_Repress: Omega 31.2 33 0.00072 19.5 1.3 20 62-81 44-63 (71)
383 PRK04017 hypothetical protein; 30.0 1.2E+02 0.0027 19.9 4.0 32 7-38 3-34 (132)
384 COG0480 FusA Translation elong 29.4 1.2E+02 0.0027 25.7 4.8 16 25-40 127-142 (697)
385 cd01900 YchF YchF subfamily. 29.1 48 0.001 24.5 2.2 42 26-67 195-239 (274)
386 cd01028 TOPRIM_TopoIA TOPRIM_T 29.0 84 0.0018 20.5 3.2 51 25-75 89-141 (142)
387 KOG4271 Rho-GTPase activating 28.9 65 0.0014 28.3 3.1 31 55-85 3-33 (1100)
388 KOG4542 Predicted membrane pro 27.9 29 0.00063 21.1 0.7 7 122-128 89-95 (96)
389 TIGR00064 ftsY signal recognit 26.7 1.2E+02 0.0026 22.2 4.0 42 28-73 219-260 (272)
390 KOG0468 U5 snRNP-specific prot 26.5 38 0.00083 28.8 1.4 14 25-38 248-261 (971)
391 KOG2961 Predicted hydrolase (H 26.2 2.2E+02 0.0049 19.6 7.0 59 20-78 73-132 (190)
392 PF00205 TPP_enzyme_M: Thiamin 26.2 88 0.0019 19.9 2.9 37 25-63 11-47 (137)
393 KOG3929 Uncharacterized conser 26.0 33 0.00071 25.8 0.8 13 26-38 190-202 (363)
394 cd03361 TOPRIM_TopoIA_RevGyr T 25.1 1.1E+02 0.0023 20.9 3.2 59 16-74 108-168 (170)
395 PF09547 Spore_IV_A: Stage IV 24.2 3.9E+02 0.0085 21.7 6.6 55 8-65 163-219 (492)
396 KOG0459 Polypeptide release fa 23.9 1.1E+02 0.0024 24.5 3.4 49 26-74 217-279 (501)
397 COG4109 Predicted transcriptio 23.0 1.3E+02 0.0028 23.6 3.5 60 20-80 108-181 (432)
398 PHA02763 hypothetical protein; 22.8 1.2E+02 0.0025 18.6 2.6 17 8-24 65-81 (102)
399 PF01939 DUF91: Protein of unk 22.0 2.9E+02 0.0063 20.0 5.0 50 6-62 160-211 (228)
400 PRK12727 flagellar biosynthesi 21.7 4E+02 0.0086 22.2 6.2 39 27-69 485-523 (559)
401 PF00503 G-alpha: G-protein al 21.3 50 0.0011 25.4 1.1 24 57-80 366-389 (389)
402 TIGR01303 IMP_DH_rel_1 IMP deh 21.0 4.5E+02 0.0098 21.2 6.6 63 1-72 242-314 (475)
403 TIGR00484 EF-G translation elo 20.6 82 0.0018 26.4 2.3 27 56-82 254-280 (689)
404 PRK00007 elongation factor G; 20.6 84 0.0018 26.4 2.3 27 56-82 255-281 (693)
405 cd02033 BchX Chlorophyllide re 20.3 4E+02 0.0086 20.3 8.3 65 13-82 193-274 (329)
No 1
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.86 E-value=2e-20 Score=131.26 Aligned_cols=126 Identities=78% Similarity=1.241 Sum_probs=103.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
|||++++.||..+..|+.++.+.+.++|+++||||+|+..+.+..+...++...++.||+|||++|.||.++|.+|++.+
T Consensus 74 V~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 74 MFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999988789999999999999776666555577888889999999999999999999999999
Q ss_pred hcCCCCCCcCCCCCCCCccCcCHHHHHHHHHHHHHHcCCCCCCCCC
Q 032955 81 AGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDD 126 (130)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 126 (130)
.+..+......+...++....+....++....+..+..--.|+.+|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (200)
T smart00176 154 IGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAATTALPDEDD 199 (200)
T ss_pred HhcccceeccCcccCCcccccChhhhhhhhHHHHHHHHhcCCCCCC
Confidence 8887776777777778777777777777776555554333344443
No 2
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.85 E-value=2.6e-20 Score=132.21 Aligned_cols=127 Identities=99% Similarity=1.484 Sum_probs=111.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
|||+++++||..+..|+..+.+.+.++|+++||||+|+.++.+..+...++...++.||+|||++|.||+++|.+|++.+
T Consensus 92 vfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999887789999999999999766665543477777889999999999999999999999999
Q ss_pred hcCCCCCCcCCCCCCCCccCcCHHHHHHHHHHHHHHcCCCCCCCCCC
Q 032955 81 AGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDD 127 (130)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 127 (130)
.+.........+...++...++....++....+..+....+++.+++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (219)
T PLN03071 172 AGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAAQPLPDDDDD 218 (219)
T ss_pred HcCcchhcccccccCCcccCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 88877777778888888889999999999999999998877776654
No 3
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=5.3e-21 Score=132.57 Aligned_cols=86 Identities=29% Similarity=0.601 Sum_probs=79.9
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||+++..||+++..|+..+.++. .++|++|||||+|+.. |.|+.+ ++++|.++|+.|+|||||+|.||+++|..|+
T Consensus 91 vyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La 170 (207)
T KOG0078|consen 91 VYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLA 170 (207)
T ss_pred EEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHH
Confidence 799999999999999999999986 4999999999999987 888877 8999999999999999999999999999999
Q ss_pred HHHhcCCCC
Q 032955 78 RKLAGDPNL 86 (130)
Q Consensus 78 ~~i~~~~~~ 86 (130)
+.+..+...
T Consensus 171 ~~i~~k~~~ 179 (207)
T KOG0078|consen 171 RDILQKLED 179 (207)
T ss_pred HHHHhhcch
Confidence 999875544
No 4
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=3.8e-21 Score=131.37 Aligned_cols=126 Identities=75% Similarity=1.209 Sum_probs=118.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
+||++.+-++.++.+|...+.+.+.++|||++|||.|..++.+......+-...++.|+++||+++.|.+..|.++++.+
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl 168 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKL 168 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccccccceeeecccceeEEeecccccccccchHHHhhhh
Confidence 59999999999999999999999999999999999999887765555566667789999999999999999999999999
Q ss_pred hcCCCCCCcCCCCCCCCccCcCHHHHHHHHHHHHHHcCCCCCCCCC
Q 032955 81 AGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDD 126 (130)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 126 (130)
...+.++++..+.+.|++.++|...+++++.-+..+++.|+|++||
T Consensus 169 ~G~p~Lefva~paLaPpev~~d~~~~~q~e~dl~~a~t~~lp~ed~ 214 (216)
T KOG0096|consen 169 TGDPSLEFVAMPALAPPEVIMDYWLQRQHEHDLAEAQTTALPDEDD 214 (216)
T ss_pred cCCCCeEEEeccccCCCeeeccchhhHHHHHHHHHHhccCCCcccc
Confidence 9999999999999999999999999999999999999999999988
No 5
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=6.8e-20 Score=125.84 Aligned_cols=92 Identities=34% Similarity=0.574 Sum_probs=83.1
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCc-EEEeccCCCCChHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQ-YYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~-~~e~Sak~~~~v~~lf~~l 76 (130)
|||+|+.+||.++..|+.++.++. .++|.+|||||+|+.+ +.|+.+ ++.|+.+++++ |++||||++.||+++|..|
T Consensus 88 vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~l 167 (205)
T KOG0084|consen 88 VYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTL 167 (205)
T ss_pred EEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHH
Confidence 799999999999999999999985 6889999999999987 777766 88999999999 9999999999999999999
Q ss_pred HHHHhcCCCCCCcCCC
Q 032955 77 ARKLAGDPNLHFVESP 92 (130)
Q Consensus 77 ~~~i~~~~~~~~~~~~ 92 (130)
+..+..+.......+.
T Consensus 168 a~~lk~~~~~~~~~~~ 183 (205)
T KOG0084|consen 168 AKELKQRKGLHVKWST 183 (205)
T ss_pred HHHHHHhcccCCCCCc
Confidence 9999887776666654
No 6
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.80 E-value=7.6e-19 Score=122.25 Aligned_cols=85 Identities=22% Similarity=0.545 Sum_probs=76.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
|||++++.||+.+..|+.++.+..+++|+||||||+||.+ +.++.+ +..+++..++.||+|||++|.||+++|.+|++
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence 7999999999999999999988778999999999999975 566655 78899999999999999999999999999999
Q ss_pred HHhcCCC
Q 032955 79 KLAGDPN 85 (130)
Q Consensus 79 ~i~~~~~ 85 (130)
.+.....
T Consensus 165 ~i~~~~~ 171 (189)
T cd04121 165 IVLMRHG 171 (189)
T ss_pred HHHHhcC
Confidence 8875433
No 7
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.80 E-value=1.4e-19 Score=119.71 Aligned_cols=84 Identities=30% Similarity=0.547 Sum_probs=76.9
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc-cCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
|||+||.+||.++.+|+++++.+++.+|-||||||.|+++|. |..+ +..||.+.|+.+||+|||++.|++.+|..|++
T Consensus 87 VYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~ 166 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITK 166 (198)
T ss_pred EEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHH
Confidence 799999999999999999999999999999999999999844 4444 88999999999999999999999999999999
Q ss_pred HHhcCC
Q 032955 79 KLAGDP 84 (130)
Q Consensus 79 ~i~~~~ 84 (130)
++....
T Consensus 167 qvl~~k 172 (198)
T KOG0079|consen 167 QVLQAK 172 (198)
T ss_pred HHHHHH
Confidence 887644
No 8
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.80 E-value=2.8e-19 Score=125.65 Aligned_cols=116 Identities=24% Similarity=0.496 Sum_probs=85.9
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhc-CCcEEEeccCCCCChHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~-~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||+++++||+.+..|+..+.+.. .++|+++||||+||.. +.++.. +..++++. ++.||+|||++|.||+++|.+|
T Consensus 79 VfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l 158 (202)
T cd04120 79 VYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 158 (202)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHH
Confidence 799999999999999999887764 5899999999999964 666654 67788775 7889999999999999999999
Q ss_pred HHHHhcCCCCCCcCCCCCCCCccCcCHHHHHHHHHHHHHHcCCCCCC
Q 032955 77 ARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPD 123 (130)
Q Consensus 77 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 123 (130)
++.+............. -++...-+.+.++++.-++|.||
T Consensus 159 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 198 (202)
T cd04120 159 VDDILKKMPLDILRNEL-------SNSILSLQPEPEIPPELPPPRPH 198 (202)
T ss_pred HHHHHHhCccccccccc-------cchhhccCCCCCCCcCCCCCCCC
Confidence 99887653332222111 11122233345566666667665
No 9
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.2e-19 Score=119.89 Aligned_cols=87 Identities=23% Similarity=0.452 Sum_probs=79.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++|.+||..+..|.-.++.++ .++|+|+|||||||.+ |.++.+ +..++.++|+.|||+|||.+.||.++|.+++
T Consensus 100 myDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv 179 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLV 179 (193)
T ss_pred EEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHH
Confidence 699999999999999999998885 6999999999999986 777777 8899999999999999999999999999999
Q ss_pred HHHhcCCCCC
Q 032955 78 RKLAGDPNLH 87 (130)
Q Consensus 78 ~~i~~~~~~~ 87 (130)
..|+.++..+
T Consensus 180 ~~Ic~kmses 189 (193)
T KOG0093|consen 180 DIICDKMSES 189 (193)
T ss_pred HHHHHHhhhh
Confidence 9998876543
No 10
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=3.9e-19 Score=121.71 Aligned_cols=88 Identities=28% Similarity=0.488 Sum_probs=79.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||+|+.+||..+..|+.++++.. +++.+.|||||+||.+ |.|..+ +..+|.+.|+.|||+|||||.||+++|..|+
T Consensus 84 vYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia 163 (200)
T KOG0092|consen 84 VYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIA 163 (200)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHH
Confidence 799999999999999999999874 5788889999999988 888765 8899999999999999999999999999999
Q ss_pred HHHhcCCCCCC
Q 032955 78 RKLAGDPNLHF 88 (130)
Q Consensus 78 ~~i~~~~~~~~ 88 (130)
+.+........
T Consensus 164 ~~lp~~~~~~~ 174 (200)
T KOG0092|consen 164 EKLPCSDPQER 174 (200)
T ss_pred HhccCcccccc
Confidence 99987655443
No 11
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.8e-19 Score=122.97 Aligned_cols=88 Identities=30% Similarity=0.507 Sum_probs=80.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||+++++||.++..|+..++++. +++.++|+|||+||.. |.|+.+ +..||++.|+.|+++||+++.||+++|..++
T Consensus 85 Vydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta 164 (216)
T KOG0098|consen 85 VYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTA 164 (216)
T ss_pred EEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHH
Confidence 799999999999999999999984 8999999999999987 778776 8999999999999999999999999999999
Q ss_pred HHHhcCCCCCC
Q 032955 78 RKLAGDPNLHF 88 (130)
Q Consensus 78 ~~i~~~~~~~~ 88 (130)
..|.++.+...
T Consensus 165 ~~Iy~~~q~g~ 175 (216)
T KOG0098|consen 165 KEIYRKIQDGV 175 (216)
T ss_pred HHHHHHHHhcc
Confidence 99988655433
No 12
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.78 E-value=2.1e-17 Score=116.61 Aligned_cols=127 Identities=77% Similarity=1.217 Sum_probs=109.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
|||+++..||..+..|+..+.....++|+++||||+|+.++.+......++...++.++++||++|.|++++|.+|++.+
T Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 88 MFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998877778999999999999765555444566777788999999999999999999999999
Q ss_pred hcCCCCCCcCCCCCCCCccCcCHHHHHHHHHHHHHHcCCCCCCCCCC
Q 032955 81 AGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDD 127 (130)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 127 (130)
...+..-...++...+....+|....+.....+.+.+..|+|+|+|+
T Consensus 168 ~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (215)
T PTZ00132 168 TNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAANVPLPDDDDD 214 (215)
T ss_pred hhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhhCCCCCCcCC
Confidence 98877777777776666688899999999999999999999998865
No 13
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.76 E-value=5.5e-18 Score=116.71 Aligned_cols=81 Identities=26% Similarity=0.486 Sum_probs=70.9
Q ss_pred CeecCcHHHHHhH-HHHHHHHHHhCCCCcEEEEecCCCCCCc-----------ccCHH-HHHHHHhcCC-cEEEeccCCC
Q 032955 1 MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-----------QVKAK-QVTFHRKKNL-QYYEISAKSN 66 (130)
Q Consensus 1 V~d~~~~~s~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~-----------~v~~~-~~~~~~~~~~-~~~e~Sak~~ 66 (130)
|||+++++||+.+ ..|+.++.+..+++|++|||||+||.++ .++.+ +..+++.+++ .|+||||++|
T Consensus 79 vyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~ 158 (176)
T cd04133 79 AFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQ 158 (176)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcc
Confidence 7999999999998 6899999887778999999999999652 25554 7789998887 5999999999
Q ss_pred CChHHHHHHHHHHHh
Q 032955 67 YNFEKPFLYLARKLA 81 (130)
Q Consensus 67 ~~v~~lf~~l~~~i~ 81 (130)
.||+++|..+++.+.
T Consensus 159 ~nV~~~F~~~~~~~~ 173 (176)
T cd04133 159 QNVKAVFDAAIKVVL 173 (176)
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999998764
No 14
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.76 E-value=4e-18 Score=119.15 Aligned_cols=79 Identities=20% Similarity=0.489 Sum_probs=70.1
Q ss_pred CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCC--------------------cccCHH-HHHHHHhcCCcE
Q 032955 1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN--------------------RQVKAK-QVTFHRKKNLQY 58 (130)
Q Consensus 1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~--------------------~~v~~~-~~~~~~~~~~~~ 58 (130)
|||++++.||+.+. .|+..+....+++|+++||||+||.+ +.++.+ +..++++++++|
T Consensus 94 v~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~ 173 (195)
T cd01873 94 CFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPY 173 (195)
T ss_pred EEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEE
Confidence 79999999999997 59999888777899999999999863 456654 889999999999
Q ss_pred EEeccCCCCChHHHHHHHHHH
Q 032955 59 YEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 59 ~e~Sak~~~~v~~lf~~l~~~ 79 (130)
|||||++|.||+++|..+++.
T Consensus 174 ~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 174 YETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred EEcCCCCCCCHHHHHHHHHHh
Confidence 999999999999999999864
No 15
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.76 E-value=4.1e-18 Score=116.12 Aligned_cols=86 Identities=31% Similarity=0.608 Sum_probs=76.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-----CCCcEEEEecCCCCCC---cccCHH-HHHHHHhcC-CcEEEeccCCCCChH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN---RQVKAK-QVTFHRKKN-LQYYEISAKSNYNFE 70 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-----~~~piilv~NK~Dl~~---~~v~~~-~~~~~~~~~-~~~~e~Sak~~~~v~ 70 (130)
|||+++++||+++..|.+++.... ..-|+|++|||+|+.+ ++|+.. ++.||.+.| ++|||+|||.+.||+
T Consensus 88 vydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~ 167 (210)
T KOG0394|consen 88 VYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVD 167 (210)
T ss_pred EeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHH
Confidence 689999999999999999988764 3679999999999976 788876 889999875 899999999999999
Q ss_pred HHHHHHHHHHhcCCCC
Q 032955 71 KPFLYLARKLAGDPNL 86 (130)
Q Consensus 71 ~lf~~l~~~i~~~~~~ 86 (130)
++|..+++.++.....
T Consensus 168 ~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 168 EAFEEIARRALANEDR 183 (210)
T ss_pred HHHHHHHHHHHhccch
Confidence 9999999998876653
No 16
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.76 E-value=5.9e-18 Score=117.11 Aligned_cols=82 Identities=22% Similarity=0.365 Sum_probs=71.9
Q ss_pred CeecCcHHHHHhH-HHHHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcCC-cEEEeccC
Q 032955 1 MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKNL-QYYEISAK 64 (130)
Q Consensus 1 V~d~~~~~s~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~~-~~~e~Sak 64 (130)
|||++++.||+.+ ..|+..+.+..+++|++|||||+||.+ +.++.+ +..+|+++++ +|+||||+
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk 162 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 162 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcC
Confidence 7999999999998 789999988888999999999999863 246654 8899999995 89999999
Q ss_pred CCCC-hHHHHHHHHHHHhc
Q 032955 65 SNYN-FEKPFLYLARKLAG 82 (130)
Q Consensus 65 ~~~~-v~~lf~~l~~~i~~ 82 (130)
+|.| |+++|..+++.++.
T Consensus 163 ~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 163 QSENSVRDIFHVATLACVN 181 (182)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9998 99999999986543
No 17
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.75 E-value=1.7e-17 Score=118.87 Aligned_cols=83 Identities=18% Similarity=0.313 Sum_probs=73.2
Q ss_pred CeecCcHHHHHhH-HHHHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcCC-cEEEeccC
Q 032955 1 MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKNL-QYYEISAK 64 (130)
Q Consensus 1 V~d~~~~~s~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~~-~~~e~Sak 64 (130)
|||+++++||+++ ..|+.++.+..+++|+||||||+||.+ +.|+.+ +.++|+++++ .||||||+
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAk 170 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAF 170 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCC
Confidence 7999999999985 789999998778899999999999963 456655 8899999998 69999999
Q ss_pred CCC-ChHHHHHHHHHHHhcC
Q 032955 65 SNY-NFEKPFLYLARKLAGD 83 (130)
Q Consensus 65 ~~~-~v~~lf~~l~~~i~~~ 83 (130)
+|. ||+++|..++..+.+.
T Consensus 171 tg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 171 TSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred cCCcCHHHHHHHHHHHHHHh
Confidence 997 8999999999988765
No 18
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.75 E-value=1.2e-17 Score=115.06 Aligned_cols=81 Identities=21% Similarity=0.353 Sum_probs=71.0
Q ss_pred CeecCcHHHHHhH-HHHHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcCC-cEEEeccC
Q 032955 1 MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKNL-QYYEISAK 64 (130)
Q Consensus 1 V~d~~~~~s~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~~-~~~e~Sak 64 (130)
|||+++++||+++ ..|+..+++.++++|++|||||+||.+ +.++.+ +.++++++++ .||||||+
T Consensus 79 vfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 79 CFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 7999999999996 789999998888999999999999953 236554 8899999996 79999999
Q ss_pred CCCC-hHHHHHHHHHHHh
Q 032955 65 SNYN-FEKPFLYLARKLA 81 (130)
Q Consensus 65 ~~~~-v~~lf~~l~~~i~ 81 (130)
+|.| |+++|..+++.++
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998655
No 19
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=5.9e-18 Score=117.46 Aligned_cols=83 Identities=34% Similarity=0.518 Sum_probs=76.8
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||+|.+.||+++.+|+.+++.+. ++++++|||||+||.+ |.|+.+ +..++...++.|+++||.++.||+.+|..++
T Consensus 93 VYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l 172 (222)
T KOG0087|consen 93 VYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVL 172 (222)
T ss_pred EEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHH
Confidence 799999999999999999999986 6999999999999987 777766 8899999999999999999999999999999
Q ss_pred HHHhcC
Q 032955 78 RKLAGD 83 (130)
Q Consensus 78 ~~i~~~ 83 (130)
..|.+.
T Consensus 173 ~~I~~~ 178 (222)
T KOG0087|consen 173 TEIYKI 178 (222)
T ss_pred HHHHHH
Confidence 988764
No 20
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.9e-17 Score=113.86 Aligned_cols=86 Identities=31% Similarity=0.499 Sum_probs=76.9
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||+++..||++..+|++.++... .++-|+|||||.||.+ ++++.+ +...|++++..|+++||++|.||..+|.+|
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrI 180 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRI 180 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHH
Confidence 799999999999999999998875 3588999999999987 777765 778899999999999999999999999999
Q ss_pred HHHHhcCCCC
Q 032955 77 ARKLAGDPNL 86 (130)
Q Consensus 77 ~~~i~~~~~~ 86 (130)
+..+.+....
T Consensus 181 aa~l~~~~~~ 190 (221)
T KOG0094|consen 181 AAALPGMEVL 190 (221)
T ss_pred HHhccCcccc
Confidence 9988876553
No 21
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.72 E-value=2.4e-17 Score=110.21 Aligned_cols=84 Identities=27% Similarity=0.503 Sum_probs=75.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||+|+++||..+..|..+++... ..+.+++||||+||++ +.|+.. +..++..-|..|+++||+.+.||.++|..|.
T Consensus 92 VyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt 171 (218)
T KOG0088|consen 92 VYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLT 171 (218)
T ss_pred EEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHH
Confidence 799999999999999999998875 4788999999999986 778765 8899999999999999999999999999999
Q ss_pred HHHhcCC
Q 032955 78 RKLAGDP 84 (130)
Q Consensus 78 ~~i~~~~ 84 (130)
..+.+..
T Consensus 172 ~~MiE~~ 178 (218)
T KOG0088|consen 172 AKMIEHS 178 (218)
T ss_pred HHHHHHh
Confidence 8776643
No 22
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.9e-17 Score=110.79 Aligned_cols=85 Identities=35% Similarity=0.559 Sum_probs=75.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
+||+|+..||-++..|+..++-+ +.++-||++|||+||++ +.|+.. +..+|.++++||||+||.+|.||++..+.|
T Consensus 97 iFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~L 176 (219)
T KOG0081|consen 97 IFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELL 176 (219)
T ss_pred EEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHH
Confidence 58999999999999999998865 58999999999999998 667665 778999999999999999999999999999
Q ss_pred HHHHhcCCC
Q 032955 77 ARKLAGDPN 85 (130)
Q Consensus 77 ~~~i~~~~~ 85 (130)
...+++.++
T Consensus 177 ldlvM~Rie 185 (219)
T KOG0081|consen 177 LDLVMKRIE 185 (219)
T ss_pred HHHHHHHHH
Confidence 888877543
No 23
>PTZ00099 rab6; Provisional
Probab=99.72 E-value=1.2e-16 Score=110.05 Aligned_cols=86 Identities=29% Similarity=0.447 Sum_probs=73.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.||+.+..|+..+.... .++|++|||||+||.+ +.++.. +..++..++..|+++||++|.||+++|.+|+
T Consensus 59 v~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~ 138 (176)
T PTZ00099 59 VYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIA 138 (176)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 799999999999999999887654 5789999999999975 556554 6677888888899999999999999999999
Q ss_pred HHHhcCCCC
Q 032955 78 RKLAGDPNL 86 (130)
Q Consensus 78 ~~i~~~~~~ 86 (130)
+.+......
T Consensus 139 ~~l~~~~~~ 147 (176)
T PTZ00099 139 AKLPNLDNS 147 (176)
T ss_pred HHHHhcccc
Confidence 998775543
No 24
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.71 E-value=8.8e-17 Score=111.73 Aligned_cols=83 Identities=27% Similarity=0.579 Sum_probs=70.7
Q ss_pred CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCc-------------ccCH-HHHHHHHhcC-CcEEEeccC
Q 032955 1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKN-LQYYEISAK 64 (130)
Q Consensus 1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~-------------~v~~-~~~~~~~~~~-~~~~e~Sak 64 (130)
|||+++++||+.+. .|...+....+++|+++||||+||.+. .++. ++..++++++ +.||++||+
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 69999999999997 699888776678999999999999642 2343 3678888888 589999999
Q ss_pred CCCChHHHHHHHHHHHhcC
Q 032955 65 SNYNFEKPFLYLARKLAGD 83 (130)
Q Consensus 65 ~~~~v~~lf~~l~~~i~~~ 83 (130)
+|.||+++|..|++.+...
T Consensus 161 ~g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 9999999999999988653
No 25
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.71 E-value=1.3e-16 Score=108.46 Aligned_cols=85 Identities=86% Similarity=1.421 Sum_probs=74.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
|||+++++||..+..|+..+.....++|+++||||+|+.++.+......++...++.+|++||++|.||+++|.+|++.+
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 79 MFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 79999999999999999999888778999999999999765555555567777778999999999999999999999998
Q ss_pred hcCCC
Q 032955 81 AGDPN 85 (130)
Q Consensus 81 ~~~~~ 85 (130)
.+.++
T Consensus 159 ~~~~~ 163 (166)
T cd00877 159 LGNPN 163 (166)
T ss_pred Hhccc
Confidence 76554
No 26
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.71 E-value=9e-17 Score=109.95 Aligned_cols=84 Identities=31% Similarity=0.530 Sum_probs=72.8
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||++++.||..+..|...+.+. ..++|+++||||+|+.+ +.++.+ +..+++..+++|++|||++|.||+++|.+|
T Consensus 80 v~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l 159 (172)
T cd04141 80 CYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGL 159 (172)
T ss_pred EEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence 69999999999999998888765 25899999999999965 556654 778888889999999999999999999999
Q ss_pred HHHHhcCC
Q 032955 77 ARKLAGDP 84 (130)
Q Consensus 77 ~~~i~~~~ 84 (130)
++.+.++.
T Consensus 160 ~~~~~~~~ 167 (172)
T cd04141 160 VREIRRKE 167 (172)
T ss_pred HHHHHHhc
Confidence 99887543
No 27
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.71 E-value=4.6e-17 Score=109.33 Aligned_cols=86 Identities=26% Similarity=0.474 Sum_probs=75.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--C-CCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--E-NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLY 75 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~-~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~ 75 (130)
|||++|++||+++..|+.+...+. + .+.+.|||.|+||.. |+|+.+ ++.++...|+.|+||||++|.||++.|..
T Consensus 88 vyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~m 167 (213)
T KOG0091|consen 88 VYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDM 167 (213)
T ss_pred EEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHH
Confidence 699999999999999999988764 3 456679999999986 888876 88999999999999999999999999999
Q ss_pred HHHHHhcCCCC
Q 032955 76 LARKLAGDPNL 86 (130)
Q Consensus 76 l~~~i~~~~~~ 86 (130)
|++.+......
T Consensus 168 laqeIf~~i~q 178 (213)
T KOG0091|consen 168 LAQEIFQAIQQ 178 (213)
T ss_pred HHHHHHHHHhc
Confidence 99988765443
No 28
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.69 E-value=1.2e-16 Score=108.11 Aligned_cols=79 Identities=22% Similarity=0.370 Sum_probs=67.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCC---CcccCHH-HHHHHHhc-CCcEEEeccCCCCChHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK---NRQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~---~~~v~~~-~~~~~~~~-~~~~~e~Sak~~~~v~~lf 73 (130)
|||+++++||..+..|+..+.... .++|+++||||.|+. .+.++.+ +..++++. ++.|++|||++|.||+++|
T Consensus 72 v~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f 151 (158)
T cd04103 72 VFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVF 151 (158)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHH
Confidence 799999999999999999988764 578999999999985 2556654 66788776 4899999999999999999
Q ss_pred HHHHHH
Q 032955 74 LYLARK 79 (130)
Q Consensus 74 ~~l~~~ 79 (130)
..+++.
T Consensus 152 ~~~~~~ 157 (158)
T cd04103 152 QEAAQK 157 (158)
T ss_pred HHHHhh
Confidence 999864
No 29
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=6.7e-17 Score=107.57 Aligned_cols=91 Identities=29% Similarity=0.508 Sum_probs=81.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||+++++||+.+..|+..++... +++.+|++|||.||.+ |+|+.. +..||+++.+.++|+||++|.||++.|-..+
T Consensus 88 VYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~ 167 (214)
T KOG0086|consen 88 VYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCA 167 (214)
T ss_pred EEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHH
Confidence 799999999999999999998874 6999999999999987 778765 7899999999999999999999999999999
Q ss_pred HHHhcCCCCCCcCC
Q 032955 78 RKLAGDPNLHFVES 91 (130)
Q Consensus 78 ~~i~~~~~~~~~~~ 91 (130)
+.|+.+.+......
T Consensus 168 ~tIl~kIE~GElDP 181 (214)
T KOG0086|consen 168 RTILNKIESGELDP 181 (214)
T ss_pred HHHHHHHhhcCCCH
Confidence 99988777655443
No 30
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.68 E-value=4.6e-16 Score=104.57 Aligned_cols=81 Identities=32% Similarity=0.626 Sum_probs=74.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCC-CCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~-~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||+++++||+.+..|+..+....+ ++|+++||||.|+.+ +.++.+ +..++++++.+|+++||+++.||.++|..++
T Consensus 78 ~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i 157 (162)
T PF00071_consen 78 VFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELI 157 (162)
T ss_dssp EEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHH
Confidence 6999999999999999999999876 799999999999986 777765 7889999999999999999999999999999
Q ss_pred HHHh
Q 032955 78 RKLA 81 (130)
Q Consensus 78 ~~i~ 81 (130)
+.+.
T Consensus 158 ~~i~ 161 (162)
T PF00071_consen 158 RKIL 161 (162)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
No 31
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.68 E-value=5.2e-16 Score=105.04 Aligned_cols=82 Identities=34% Similarity=0.544 Sum_probs=71.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||+++++||+.+..|+..+.... ++.|+++||||+|+.+ +.++.+ +..+++..+++|+++||++|.||+++|..++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~ 160 (166)
T cd04122 81 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA 160 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 799999999999999999887764 5789999999999976 455544 6788888889999999999999999999999
Q ss_pred HHHhc
Q 032955 78 RKLAG 82 (130)
Q Consensus 78 ~~i~~ 82 (130)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T cd04122 161 KKIYQ 165 (166)
T ss_pred HHHhh
Confidence 88754
No 32
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.68 E-value=5.9e-16 Score=107.31 Aligned_cols=83 Identities=25% Similarity=0.410 Sum_probs=69.3
Q ss_pred CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCc-------------ccCHH-HHHHHHhcC-CcEEEeccC
Q 032955 1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKKN-LQYYEISAK 64 (130)
Q Consensus 1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~-------------~v~~~-~~~~~~~~~-~~~~e~Sak 64 (130)
|||+++++||+.+. .|+..+....+++|+++||||+|+.+. .+..+ +..++...+ +.||+|||+
T Consensus 78 v~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 157 (189)
T cd04134 78 CFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAK 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCC
Confidence 69999999999996 599998877779999999999999652 13333 556777766 689999999
Q ss_pred CCCChHHHHHHHHHHHhcC
Q 032955 65 SNYNFEKPFLYLARKLAGD 83 (130)
Q Consensus 65 ~~~~v~~lf~~l~~~i~~~ 83 (130)
+|.||+++|.+|++.+...
T Consensus 158 ~~~~v~e~f~~l~~~~~~~ 176 (189)
T cd04134 158 LNRGVNEAFTEAARVALNV 176 (189)
T ss_pred cCCCHHHHHHHHHHHHhcc
Confidence 9999999999999988753
No 33
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.68 E-value=1.2e-16 Score=107.15 Aligned_cols=88 Identities=32% Similarity=0.464 Sum_probs=79.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCC-CcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK-NRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~-~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||+|.+++|..+..|.+++.-++ +++-.++||||+|.. +|.|+.+ +.+||+++++-|+|+|||+..||...|+.|
T Consensus 90 VYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Feel 169 (209)
T KOG0080|consen 90 VYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEEL 169 (209)
T ss_pred EEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHH
Confidence 799999999999999999999886 477788999999987 4888876 899999999999999999999999999999
Q ss_pred HHHHhcCCCCCC
Q 032955 77 ARKLAGDPNLHF 88 (130)
Q Consensus 77 ~~~i~~~~~~~~ 88 (130)
+..|.+.+....
T Consensus 170 veKIi~tp~l~~ 181 (209)
T KOG0080|consen 170 VEKIIETPSLWE 181 (209)
T ss_pred HHHHhcCcchhh
Confidence 999988766543
No 34
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.67 E-value=4.1e-16 Score=107.01 Aligned_cols=80 Identities=20% Similarity=0.451 Sum_probs=67.7
Q ss_pred CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcC-CcEEEeccC
Q 032955 1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKN-LQYYEISAK 64 (130)
Q Consensus 1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~-~~~~e~Sak 64 (130)
|||+++++||+.+. .|+..+....+++|+++||||+|+.+ +.++.+ +..++++.+ ..||++||+
T Consensus 79 v~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 79 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 69999999999997 59998887767899999999999854 234444 667887777 689999999
Q ss_pred CCCChHHHHHHHHHHH
Q 032955 65 SNYNFEKPFLYLARKL 80 (130)
Q Consensus 65 ~~~~v~~lf~~l~~~i 80 (130)
+|.||+++|..++..+
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998864
No 35
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.67 E-value=5.5e-16 Score=104.77 Aligned_cols=79 Identities=25% Similarity=0.506 Sum_probs=69.1
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||+++++||+.+..|+..+.... .++|+++||||.|+.+ +.+..+ +..+++.++.+|+++||++|.||+++|.+|+
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 158 (161)
T cd04117 79 VYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLT 158 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 699999999999999999988765 4799999999999965 555544 7788888889999999999999999999998
Q ss_pred HH
Q 032955 78 RK 79 (130)
Q Consensus 78 ~~ 79 (130)
+.
T Consensus 159 ~~ 160 (161)
T cd04117 159 EL 160 (161)
T ss_pred hh
Confidence 64
No 36
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.67 E-value=6.6e-16 Score=105.63 Aligned_cols=83 Identities=35% Similarity=0.542 Sum_probs=72.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||+++++||..+..|+..+.... .++|+++||||+|+.+ +.++.+ ...++++.+++++++||++|.|++++|..|
T Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l 172 (180)
T cd04127 93 IFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERL 172 (180)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 799999999999999999987753 5889999999999975 555544 678888899999999999999999999999
Q ss_pred HHHHhcC
Q 032955 77 ARKLAGD 83 (130)
Q Consensus 77 ~~~i~~~ 83 (130)
++.+.++
T Consensus 173 ~~~~~~~ 179 (180)
T cd04127 173 LDLVMKR 179 (180)
T ss_pred HHHHHhh
Confidence 9887643
No 37
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.67 E-value=5.4e-16 Score=108.50 Aligned_cols=82 Identities=30% Similarity=0.545 Sum_probs=74.6
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
||+++++.||+.+..|+..+.+. ...+|+++||||+|+.. +.|+.+ +..++..++++|+|+||+.+.+|+++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 79999999999999999988554 25789999999999987 888876 889999999999999999999999999999
Q ss_pred HHHHhc
Q 032955 77 ARKLAG 82 (130)
Q Consensus 77 ~~~i~~ 82 (130)
++.+..
T Consensus 161 ~r~~~~ 166 (196)
T KOG0395|consen 161 VREIRL 166 (196)
T ss_pred HHHHHh
Confidence 999876
No 38
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.67 E-value=6.6e-16 Score=109.86 Aligned_cols=83 Identities=27% Similarity=0.390 Sum_probs=69.6
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh-CCCCcEEEEecCCCCCC--------------------cccCHH-HHHHHHhcC---
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN--------------------RQVKAK-QVTFHRKKN--- 55 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~--------------------~~v~~~-~~~~~~~~~--- 55 (130)
|||+++++||..+..|+..+.+. ..++|+|+||||+||.+ +.++.+ +..++.+.+
T Consensus 74 V~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~ 153 (220)
T cd04126 74 TYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYK 153 (220)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccc
Confidence 79999999999999887776654 35799999999999864 455554 778888776
Q ss_pred -----------CcEEEeccCCCCChHHHHHHHHHHHhcC
Q 032955 56 -----------LQYYEISAKSNYNFEKPFLYLARKLAGD 83 (130)
Q Consensus 56 -----------~~~~e~Sak~~~~v~~lf~~l~~~i~~~ 83 (130)
++||||||++|.||+++|..+++.+...
T Consensus 154 ~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~ 192 (220)
T cd04126 154 MLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPL 192 (220)
T ss_pred cccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 6799999999999999999999887653
No 39
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.66 E-value=1e-15 Score=105.72 Aligned_cols=85 Identities=22% Similarity=0.337 Sum_probs=69.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCC-CCcEEEEecCCCCCC-------cccCHHHHHHHHhcCCcEEEeccCCCCChHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-------RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP 72 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~-~~piilv~NK~Dl~~-------~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~l 72 (130)
|||+++++||..+..|+..+.+..+ .+| ++||||+|+.. +.+..++..+++.+++++|++||++|.||+++
T Consensus 79 v~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 79 MFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 6999999999999999999887643 456 68999999842 11223356788888899999999999999999
Q ss_pred HHHHHHHHhcCCCC
Q 032955 73 FLYLARKLAGDPNL 86 (130)
Q Consensus 73 f~~l~~~i~~~~~~ 86 (130)
|.++++.+.+.+..
T Consensus 158 f~~l~~~l~~~~~~ 171 (182)
T cd04128 158 FKIVLAKAFDLPLT 171 (182)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999988765443
No 40
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.65 E-value=1.1e-15 Score=106.81 Aligned_cols=88 Identities=26% Similarity=0.455 Sum_probs=75.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
|||+++++||..+..|+..+......+|+++||||+|+.+ +.+... ...++...+.+||++||++|.||+++|.+|++
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~ 164 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITE 164 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHH
Confidence 6999999999999999999888778899999999999976 344433 66778888899999999999999999999999
Q ss_pred HHhcCCCCCC
Q 032955 79 KLAGDPNLHF 88 (130)
Q Consensus 79 ~i~~~~~~~~ 88 (130)
.++.......
T Consensus 165 ~~~~~~~~~~ 174 (199)
T cd04110 165 LVLRAKKDNL 174 (199)
T ss_pred HHHHhhhccC
Confidence 9887544443
No 41
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.65 E-value=1.1e-15 Score=104.84 Aligned_cols=79 Identities=23% Similarity=0.486 Sum_probs=67.1
Q ss_pred CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCc-------------ccCHH-HHHHHHhcC-CcEEEeccC
Q 032955 1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKKN-LQYYEISAK 64 (130)
Q Consensus 1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~-------------~v~~~-~~~~~~~~~-~~~~e~Sak 64 (130)
|||+++++||..+. .|+..+....+++|+++||||+|+.+. .++.+ +..++.+++ +.|++|||+
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 79 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 69999999999996 699888776678999999999999542 24444 678888888 489999999
Q ss_pred CCCChHHHHHHHHHH
Q 032955 65 SNYNFEKPFLYLARK 79 (130)
Q Consensus 65 ~~~~v~~lf~~l~~~ 79 (130)
+|.||+++|..+++.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999999864
No 42
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.65 E-value=2.2e-15 Score=107.33 Aligned_cols=86 Identities=22% Similarity=0.377 Sum_probs=71.8
Q ss_pred CeecCcHHHHHhH-HHHHHHHHHhCCCCcEEEEecCCCCCCc-------------ccCHH-HHHHHHhcCC-cEEEeccC
Q 032955 1 MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKKNL-QYYEISAK 64 (130)
Q Consensus 1 V~d~~~~~s~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~-------------~v~~~-~~~~~~~~~~-~~~e~Sak 64 (130)
|||+++++||+.+ ..|..++...++++|+||||||+||.+. .++.+ +..++++.+. .||||||+
T Consensus 79 vfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 79 CFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 7999999999999 5698888777789999999999999541 24544 7789999985 89999999
Q ss_pred CCCC-hHHHHHHHHHHHhcCCCC
Q 032955 65 SNYN-FEKPFLYLARKLAGDPNL 86 (130)
Q Consensus 65 ~~~~-v~~lf~~l~~~i~~~~~~ 86 (130)
++.| |+++|..+++.++.....
T Consensus 159 ~~~~~V~~~F~~~~~~~~~~~~~ 181 (222)
T cd04173 159 SSERSVRDVFHVATVASLGRGHR 181 (222)
T ss_pred cCCcCHHHHHHHHHHHHHhccCC
Confidence 9985 999999999987765443
No 43
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.64 E-value=2.5e-15 Score=101.71 Aligned_cols=82 Identities=26% Similarity=0.515 Sum_probs=70.6
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++++|+.+..|+..+.+.. ..+|+++||||+|+.+ +.+..+ ..+++..+++++|++||++|.|++++|.+++
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (165)
T cd01865 80 MYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLV 159 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999988765 5789999999999975 444443 5677788889999999999999999999999
Q ss_pred HHHhc
Q 032955 78 RKLAG 82 (130)
Q Consensus 78 ~~i~~ 82 (130)
+.+..
T Consensus 160 ~~~~~ 164 (165)
T cd01865 160 DIICD 164 (165)
T ss_pred HHHHh
Confidence 88764
No 44
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.64 E-value=2.3e-16 Score=102.93 Aligned_cols=83 Identities=25% Similarity=0.528 Sum_probs=74.8
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
+||++|..||+++..|+.++.++. ..+-++++|||+|+.. +.|..+ +..++..+++||.++|||+|.||+..|-.|+
T Consensus 77 lydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia 156 (192)
T KOG0083|consen 77 LYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIA 156 (192)
T ss_pred eeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHH
Confidence 699999999999999999999885 5788999999999954 777765 8899999999999999999999999999999
Q ss_pred HHHhcC
Q 032955 78 RKLAGD 83 (130)
Q Consensus 78 ~~i~~~ 83 (130)
+.+.+.
T Consensus 157 ~~l~k~ 162 (192)
T KOG0083|consen 157 EELKKL 162 (192)
T ss_pred HHHHHh
Confidence 887653
No 45
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.64 E-value=3.4e-15 Score=103.52 Aligned_cols=86 Identities=30% Similarity=0.523 Sum_probs=72.6
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC----CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFL 74 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~----~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~ 74 (130)
|||+++++||+.+..|+..+.... .++|+++||||+|+.+ +.++.. +..+++.++++|+++||++|.||+++|.
T Consensus 77 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~ 156 (190)
T cd04144 77 VYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFY 156 (190)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHH
Confidence 689999999999999998887652 4789999999999964 555544 5677888888999999999999999999
Q ss_pred HHHHHHhcCCCC
Q 032955 75 YLARKLAGDPNL 86 (130)
Q Consensus 75 ~l~~~i~~~~~~ 86 (130)
++++.+..+...
T Consensus 157 ~l~~~l~~~~~~ 168 (190)
T cd04144 157 TLVRALRQQRQG 168 (190)
T ss_pred HHHHHHHHhhcc
Confidence 999988755544
No 46
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.64 E-value=2.2e-15 Score=102.40 Aligned_cols=82 Identities=24% Similarity=0.454 Sum_probs=69.6
Q ss_pred CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCc-------------ccCHH-HHHHHHhcCC-cEEEeccC
Q 032955 1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKKNL-QYYEISAK 64 (130)
Q Consensus 1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~-------------~v~~~-~~~~~~~~~~-~~~e~Sak 64 (130)
|||+++++||+.+. .|+..+....+++|+++||||+|+... .++.+ +..+++..+. .|+++||+
T Consensus 76 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 155 (174)
T smart00174 76 CFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSAL 155 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCC
Confidence 68999999999996 599998887789999999999998641 14433 5678888886 89999999
Q ss_pred CCCChHHHHHHHHHHHhc
Q 032955 65 SNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 65 ~~~~v~~lf~~l~~~i~~ 82 (130)
+|.||+++|..+++.+++
T Consensus 156 ~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 156 TQEGVREVFEEAIRAALN 173 (174)
T ss_pred CCCCHHHHHHHHHHHhcC
Confidence 999999999999988754
No 47
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.63 E-value=2.8e-15 Score=105.98 Aligned_cols=83 Identities=29% Similarity=0.460 Sum_probs=72.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC----CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFL 74 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~----~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~ 74 (130)
|||+++++||+.+..|+..+.+.. .++|+++||||+|+.+ +.+..+ ...+++.++++++++||++|.||+++|.
T Consensus 80 V~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~ 159 (215)
T cd04109 80 VYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQ 159 (215)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 799999999999999999988764 3578999999999974 566654 6678888889999999999999999999
Q ss_pred HHHHHHhcC
Q 032955 75 YLARKLAGD 83 (130)
Q Consensus 75 ~l~~~i~~~ 83 (130)
+|++.+...
T Consensus 160 ~l~~~l~~~ 168 (215)
T cd04109 160 QLAAELLGV 168 (215)
T ss_pred HHHHHHHhc
Confidence 999988764
No 48
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.63 E-value=4e-15 Score=104.16 Aligned_cols=85 Identities=22% Similarity=0.273 Sum_probs=70.1
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC----CCCcEEEEecCCCCCC-cccCHH-HHHHHH-hcCCcEEEeccCCCCChHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKAK-QVTFHR-KKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~----~~~piilv~NK~Dl~~-~~v~~~-~~~~~~-~~~~~~~e~Sak~~~~v~~lf 73 (130)
|||+++++||+.+..|+..+.+.. .++|+++||||+|+.. +.++.+ ...++. .++++||+|||++|.||+++|
T Consensus 87 v~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf 166 (198)
T cd04142 87 VYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLF 166 (198)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHH
Confidence 799999999999999998887652 5799999999999965 444444 445544 568899999999999999999
Q ss_pred HHHHHHHhcCCC
Q 032955 74 LYLARKLAGDPN 85 (130)
Q Consensus 74 ~~l~~~i~~~~~ 85 (130)
..+++.+.....
T Consensus 167 ~~i~~~~~~~~~ 178 (198)
T cd04142 167 KELLISATTRGR 178 (198)
T ss_pred HHHHHHhhccCC
Confidence 999998875443
No 49
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.63 E-value=4e-15 Score=103.98 Aligned_cols=85 Identities=29% Similarity=0.517 Sum_probs=72.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-----CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcC-CcEEEeccCCCCChHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKP 72 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-----~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~-~~~~e~Sak~~~~v~~l 72 (130)
|||+++++||+.+..|+..+.... .++|+++||||+|+.. +.++.+ ...+++..+ ..||++||++|.||+++
T Consensus 80 v~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~ 159 (201)
T cd04107 80 VFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA 159 (201)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence 699999999999999998887531 5789999999999974 445544 678888888 68999999999999999
Q ss_pred HHHHHHHHhcCCC
Q 032955 73 FLYLARKLAGDPN 85 (130)
Q Consensus 73 f~~l~~~i~~~~~ 85 (130)
|.+|++.+.....
T Consensus 160 f~~l~~~l~~~~~ 172 (201)
T cd04107 160 MRFLVKNILANDK 172 (201)
T ss_pred HHHHHHHHHHhch
Confidence 9999998876543
No 50
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.62 E-value=5.9e-15 Score=100.04 Aligned_cols=82 Identities=28% Similarity=0.563 Sum_probs=71.1
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.||..+..|+..+.+.. .++|+++||||+|+.+ +.+..+ ...++..++++++++||++|.||+++|.+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 161 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA 161 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 689999999999999999988764 5799999999999975 444443 6677888889999999999999999999999
Q ss_pred HHHhc
Q 032955 78 RKLAG 82 (130)
Q Consensus 78 ~~i~~ 82 (130)
+.+..
T Consensus 162 ~~~~~ 166 (167)
T cd01867 162 KDIKK 166 (167)
T ss_pred HHHHh
Confidence 98764
No 51
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.62 E-value=6.5e-15 Score=99.49 Aligned_cols=81 Identities=32% Similarity=0.585 Sum_probs=70.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||+++++||..+..|+..+.... .+.|+++||||+|+.. +.+... +..++..++++++++||++|.||+++|..|+
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 81 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence 689999999999999999988765 5799999999999865 445544 6678888899999999999999999999999
Q ss_pred HHHh
Q 032955 78 RKLA 81 (130)
Q Consensus 78 ~~i~ 81 (130)
+.+.
T Consensus 161 ~~~~ 164 (166)
T cd01869 161 REIK 164 (166)
T ss_pred HHHH
Confidence 8775
No 52
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.62 E-value=4.8e-15 Score=100.27 Aligned_cols=79 Identities=29% Similarity=0.454 Sum_probs=66.9
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC----CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFL 74 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~----~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~ 74 (130)
|||+++++||+.+..|+..+.+.. .++|+++||||+|+.. +.+... +..++..+++.|+++||++|.||+++|+
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~ 158 (165)
T cd04140 79 VYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQ 158 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHH
Confidence 699999999999999988777642 5799999999999975 555544 5677777888999999999999999999
Q ss_pred HHHHH
Q 032955 75 YLARK 79 (130)
Q Consensus 75 ~l~~~ 79 (130)
+|+..
T Consensus 159 ~l~~~ 163 (165)
T cd04140 159 ELLNL 163 (165)
T ss_pred HHHhc
Confidence 98753
No 53
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.62 E-value=1.4e-14 Score=102.95 Aligned_cols=85 Identities=24% Similarity=0.331 Sum_probs=72.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||++++.||+.+..|+..+.... .++|+++|+||+|+.+ +.++.+ +..++..++++|+++||++|.||+++|..+
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 699999999999999999887753 5899999999999865 555544 667788888999999999999999999999
Q ss_pred HHHHhcCCC
Q 032955 77 ARKLAGDPN 85 (130)
Q Consensus 77 ~~~i~~~~~ 85 (130)
++.+.....
T Consensus 159 ~~~~~~~~~ 167 (221)
T cd04148 159 VRQIRLRRD 167 (221)
T ss_pred HHHHHhhhc
Confidence 998864433
No 54
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.61 E-value=9.3e-15 Score=100.96 Aligned_cols=86 Identities=28% Similarity=0.509 Sum_probs=73.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||+++++||..+..|+..+.... ..+|+++||||+|+.+ +.++.. +..++...+++++++||++|.||+++|..|+
T Consensus 79 v~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~ 158 (188)
T cd04125 79 VYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLV 158 (188)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 699999999999999999988764 4689999999999975 555544 5677777888999999999999999999999
Q ss_pred HHHhcCCCC
Q 032955 78 RKLAGDPNL 86 (130)
Q Consensus 78 ~~i~~~~~~ 86 (130)
+.+..+...
T Consensus 159 ~~~~~~~~~ 167 (188)
T cd04125 159 KLIIKRLEE 167 (188)
T ss_pred HHHHHHhhc
Confidence 998765443
No 55
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.61 E-value=5.2e-15 Score=99.96 Aligned_cols=81 Identities=23% Similarity=0.493 Sum_probs=69.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC---CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCC-ChHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNY-NFEKPFL 74 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~-~v~~lf~ 74 (130)
|||++++.||+.+..|+..+.... .++|+++||||+|+.+ +.++.+ +..++...+.+||++||++|. ||+++|.
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~ 157 (165)
T cd04146 78 VYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFH 157 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHH
Confidence 699999999999999998887753 4899999999999864 555554 667888888999999999995 9999999
Q ss_pred HHHHHHh
Q 032955 75 YLARKLA 81 (130)
Q Consensus 75 ~l~~~i~ 81 (130)
.|++.+.
T Consensus 158 ~l~~~~~ 164 (165)
T cd04146 158 ELCREVR 164 (165)
T ss_pred HHHHHHh
Confidence 9998764
No 56
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.61 E-value=8.2e-15 Score=98.81 Aligned_cols=81 Identities=28% Similarity=0.539 Sum_probs=68.8
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||++++.||+.+..|...+... ..++|+++||||+|+.+ +.++.. ...+++.++++|+++||++|.||+++|.++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 158 (164)
T cd04175 79 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDL 158 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 68999999999999999988764 36899999999999975 444444 557777888999999999999999999999
Q ss_pred HHHHh
Q 032955 77 ARKLA 81 (130)
Q Consensus 77 ~~~i~ 81 (130)
++.+.
T Consensus 159 ~~~l~ 163 (164)
T cd04175 159 VRQIN 163 (164)
T ss_pred HHHhh
Confidence 98764
No 57
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.61 E-value=7.1e-15 Score=98.64 Aligned_cols=79 Identities=25% Similarity=0.574 Sum_probs=69.1
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
|||+++++||..+..|+..+.....++|+++|+||+|+.. +.++.+ +..++...++++|++||++|.|++++|..|+.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999887778999999999999865 455544 66788888999999999999999999999875
Q ss_pred H
Q 032955 79 K 79 (130)
Q Consensus 79 ~ 79 (130)
.
T Consensus 161 ~ 161 (162)
T cd04106 161 K 161 (162)
T ss_pred h
Confidence 4
No 58
>PTZ00369 Ras-like protein; Provisional
Probab=99.61 E-value=7.5e-15 Score=101.71 Aligned_cols=84 Identities=25% Similarity=0.525 Sum_probs=71.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||+++++||+.+..|+..+.+.. .++|+++||||+|+.+ +.++.. +..++...+.++|++||++|.||+++|.+|
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 699999999999999999887753 4899999999999865 555543 567777778899999999999999999999
Q ss_pred HHHHhcCC
Q 032955 77 ARKLAGDP 84 (130)
Q Consensus 77 ~~~i~~~~ 84 (130)
++.+.+..
T Consensus 163 ~~~l~~~~ 170 (189)
T PTZ00369 163 VREIRKYL 170 (189)
T ss_pred HHHHHHHh
Confidence 99887543
No 59
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.60 E-value=7.9e-15 Score=98.42 Aligned_cols=80 Identities=31% Similarity=0.583 Sum_probs=67.9
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||+++++||+.+..|...+.+.. .++|+++||||+|+.+ +.+... ...+++.++.+++++||++|.||.++|.++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04136 79 VYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADL 158 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 689999999999999999887753 5799999999999965 445443 556777778899999999999999999999
Q ss_pred HHHH
Q 032955 77 ARKL 80 (130)
Q Consensus 77 ~~~i 80 (130)
++.+
T Consensus 159 ~~~~ 162 (163)
T cd04136 159 VRQI 162 (163)
T ss_pred HHhc
Confidence 8765
No 60
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.59 E-value=1.8e-14 Score=99.97 Aligned_cols=84 Identities=27% Similarity=0.524 Sum_probs=72.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||+++++||+++..|+..+.... .++|+++||||+|+.. +.+... ...++..++.+|+++||++|.|++++|..|+
T Consensus 80 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~ 159 (191)
T cd04112 80 LYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVA 159 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 699999999999999999988775 4899999999999964 555443 5677778889999999999999999999999
Q ss_pred HHHhcCC
Q 032955 78 RKLAGDP 84 (130)
Q Consensus 78 ~~i~~~~ 84 (130)
+.+....
T Consensus 160 ~~~~~~~ 166 (191)
T cd04112 160 KELKHRK 166 (191)
T ss_pred HHHHHhc
Confidence 9987664
No 61
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.59 E-value=1.4e-14 Score=102.33 Aligned_cols=84 Identities=25% Similarity=0.457 Sum_probs=72.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||+++++||+.+..|+..+.... ..+|+++||||+|+.+ +.+..+ ...+++.++++|+++||++|.||+++|..|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 699999999999999999987753 3678999999999975 455544 678888889999999999999999999999
Q ss_pred HHHHhcCC
Q 032955 77 ARKLAGDP 84 (130)
Q Consensus 77 ~~~i~~~~ 84 (130)
++.+.+..
T Consensus 162 ~~~~~~~~ 169 (211)
T cd04111 162 TQEIYERI 169 (211)
T ss_pred HHHHHHHh
Confidence 99887653
No 62
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.59 E-value=1.7e-14 Score=96.94 Aligned_cols=81 Identities=27% Similarity=0.546 Sum_probs=69.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC------CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC------ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKP 72 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~------~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~l 72 (130)
|||++++.+|..+..|+..+.+.. .+.|+++|+||+|+.+ +.+..+ ...++.+.++++|++||++|.||+++
T Consensus 79 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 158 (168)
T cd04119 79 VYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEM 158 (168)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 689999999999999999988764 3689999999999963 444444 55678888899999999999999999
Q ss_pred HHHHHHHHh
Q 032955 73 FLYLARKLA 81 (130)
Q Consensus 73 f~~l~~~i~ 81 (130)
|..|++.+.
T Consensus 159 ~~~l~~~l~ 167 (168)
T cd04119 159 FQTLFSSIV 167 (168)
T ss_pred HHHHHHHHh
Confidence 999998875
No 63
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.59 E-value=1.8e-14 Score=96.22 Aligned_cols=80 Identities=29% Similarity=0.593 Sum_probs=68.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|..+..|...+.+.. .+.|+++|+||+|+.++.+... ...++...+++++++||++|.||+++|.+|+
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 79 VFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 689999999999999998888763 5899999999999977555443 5677777888999999999999999999998
Q ss_pred HHH
Q 032955 78 RKL 80 (130)
Q Consensus 78 ~~i 80 (130)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 754
No 64
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.58 E-value=1.8e-14 Score=99.65 Aligned_cols=85 Identities=25% Similarity=0.372 Sum_probs=69.9
Q ss_pred CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCC-----------cccCHH-HHHHHHhcCC-cEEEeccCCC
Q 032955 1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-----------RQVKAK-QVTFHRKKNL-QYYEISAKSN 66 (130)
Q Consensus 1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~-----------~~v~~~-~~~~~~~~~~-~~~e~Sak~~ 66 (130)
|||++++++|..+. .|+..+....+++|+++||||+|+.+ +.+... +..++++++. .||+|||++|
T Consensus 79 v~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 79 GFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 58999999999996 59999987777899999999999853 223333 5677888884 7999999999
Q ss_pred CChHHHHHHHHHHHhcCCC
Q 032955 67 YNFEKPFLYLARKLAGDPN 85 (130)
Q Consensus 67 ~~v~~lf~~l~~~i~~~~~ 85 (130)
.||+++|..+++.+.....
T Consensus 159 ~~v~~~f~~l~~~~~~~~~ 177 (187)
T cd04129 159 EGVDDVFEAATRAALLVRK 177 (187)
T ss_pred CCHHHHHHHHHHHHhcccC
Confidence 9999999999988765433
No 65
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.58 E-value=2e-14 Score=96.86 Aligned_cols=80 Identities=34% Similarity=0.595 Sum_probs=68.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCC-CCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~-~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|..+..|+..+.+... ++|+++||||+|+.. +.+..+ ...++...++.++++||++|.|++++|+.|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 6899999999999999999888764 699999999999975 444443 5677777788999999999999999999998
Q ss_pred HHH
Q 032955 78 RKL 80 (130)
Q Consensus 78 ~~i 80 (130)
..+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 765
No 66
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.58 E-value=1.5e-14 Score=99.60 Aligned_cols=86 Identities=24% Similarity=0.396 Sum_probs=71.9
Q ss_pred CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCc-----ccCHH-HHHHHHhcCC-cEEEeccCCCCChHHH
Q 032955 1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-----QVKAK-QVTFHRKKNL-QYYEISAKSNYNFEKP 72 (130)
Q Consensus 1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~-----~v~~~-~~~~~~~~~~-~~~e~Sak~~~~v~~l 72 (130)
|||+++++||+.+. .|+..+....+++|+++||||+|+... .+... +..++..++. ++|++||++|.||+++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 79 CYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 69999999999996 599888776678999999999998642 24443 6678888887 8999999999999999
Q ss_pred HHHHHHHHhcCCCC
Q 032955 73 FLYLARKLAGDPNL 86 (130)
Q Consensus 73 f~~l~~~i~~~~~~ 86 (130)
|..+++.+......
T Consensus 159 f~~l~~~~~~~~~~ 172 (187)
T cd04132 159 FDTAIEEALKKEGK 172 (187)
T ss_pred HHHHHHHHHhhhhh
Confidence 99999998765543
No 67
>PLN03108 Rab family protein; Provisional
Probab=99.58 E-value=2.5e-14 Score=100.87 Aligned_cols=85 Identities=31% Similarity=0.530 Sum_probs=73.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.||..+..|+..+.... .++|+++|+||+|+.+ +.++.+ +..++++++++|+++||+++.||+++|.+++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~ 164 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 689999999999999998877654 5899999999999976 455544 6788888899999999999999999999999
Q ss_pred HHHhcCCC
Q 032955 78 RKLAGDPN 85 (130)
Q Consensus 78 ~~i~~~~~ 85 (130)
+.+.++..
T Consensus 165 ~~~~~~~~ 172 (210)
T PLN03108 165 AKIYKKIQ 172 (210)
T ss_pred HHHHHHhh
Confidence 98876543
No 68
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.58 E-value=1.9e-14 Score=97.15 Aligned_cols=82 Identities=33% Similarity=0.523 Sum_probs=69.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
|||++++.+|..+..|+..+++..+++|+++|+||+|+... +..+...++...++++|++||++|.|++++|..+++.+
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 79 VFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS-VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh-HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999887778999999999998532 22334566667788999999999999999999999887
Q ss_pred hcC
Q 032955 81 AGD 83 (130)
Q Consensus 81 ~~~ 83 (130)
...
T Consensus 158 ~~~ 160 (161)
T cd04124 158 VSY 160 (161)
T ss_pred Hhc
Confidence 653
No 69
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.58 E-value=2.6e-14 Score=96.15 Aligned_cols=80 Identities=28% Similarity=0.597 Sum_probs=68.1
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
|||+++++||..+..|+..+.....++|+++||||+|+.+ +.+... ...++..++++++++||++|.|++++|..|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 161 (164)
T cd04101 82 VYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLAR 161 (164)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHH
Confidence 6899999999999999999887766899999999999965 444443 45666677889999999999999999999988
Q ss_pred HH
Q 032955 79 KL 80 (130)
Q Consensus 79 ~i 80 (130)
.+
T Consensus 162 ~~ 163 (164)
T cd04101 162 AF 163 (164)
T ss_pred Hh
Confidence 65
No 70
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.58 E-value=2.8e-14 Score=96.02 Aligned_cols=81 Identities=28% Similarity=0.562 Sum_probs=68.8
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||++++++|+.+..|...+.+.. .++|+++||||+|+.. +.++.+ ...+++..+.+|+++||++|.|++++|.+|
T Consensus 78 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 157 (164)
T smart00173 78 VYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDL 157 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHH
Confidence 689999999999999988877653 4789999999999975 444544 567778888999999999999999999999
Q ss_pred HHHHh
Q 032955 77 ARKLA 81 (130)
Q Consensus 77 ~~~i~ 81 (130)
++.+.
T Consensus 158 ~~~~~ 162 (164)
T smart00173 158 VREIR 162 (164)
T ss_pred HHHHh
Confidence 98764
No 71
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.58 E-value=2e-14 Score=97.39 Aligned_cols=79 Identities=29% Similarity=0.559 Sum_probs=67.6
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-----CCCcEEEEecCCCCCCcccCHH-HHHHHHhcC-CcEEEeccCCCCChHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-----~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~-~~~~e~Sak~~~~v~~lf 73 (130)
|||+++++||+.+..|+..+.... .++|+++||||+|+..+.+... ..+++.+++ .+++++||++|.||.++|
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~ 163 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAF 163 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHH
Confidence 689999999999999999887643 4689999999999976666544 678888887 479999999999999999
Q ss_pred HHHHHH
Q 032955 74 LYLARK 79 (130)
Q Consensus 74 ~~l~~~ 79 (130)
..+++.
T Consensus 164 ~~~~~~ 169 (170)
T cd04116 164 EEAVRR 169 (170)
T ss_pred HHHHhh
Confidence 999875
No 72
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=8.5e-15 Score=96.57 Aligned_cols=88 Identities=32% Similarity=0.486 Sum_probs=78.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh-CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++.+.++.++..|+...+.. .++..++++|||.||+. +.|..+ +..|+.++|+.|+++|||+|.||++.|...+
T Consensus 90 vyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~a 169 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETA 169 (215)
T ss_pred EEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHH
Confidence 79999999999999999988776 47889999999999987 667766 7899999999999999999999999999999
Q ss_pred HHHhcCCCCCC
Q 032955 78 RKLAGDPNLHF 88 (130)
Q Consensus 78 ~~i~~~~~~~~ 88 (130)
+.|.+......
T Consensus 170 kkiyqniqdgs 180 (215)
T KOG0097|consen 170 KKIYQNIQDGS 180 (215)
T ss_pred HHHHHhhhcCc
Confidence 99988655433
No 73
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.57 E-value=2.2e-14 Score=96.50 Aligned_cols=80 Identities=26% Similarity=0.494 Sum_probs=67.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||++++.||..+..|+..+.+.. .++|+++||||+|+.. +.+... ...++..++.+++++||++|.|++++|.++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04176 79 VYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEI 158 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence 689999999999999998887753 5899999999999864 444433 566777778899999999999999999999
Q ss_pred HHHH
Q 032955 77 ARKL 80 (130)
Q Consensus 77 ~~~i 80 (130)
++.+
T Consensus 159 ~~~l 162 (163)
T cd04176 159 VRQM 162 (163)
T ss_pred HHhc
Confidence 8754
No 74
>PLN03110 Rab GTPase; Provisional
Probab=99.57 E-value=2.5e-14 Score=101.31 Aligned_cols=83 Identities=33% Similarity=0.512 Sum_probs=72.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.||+.+..|+..+.... .++|+++||||+|+.+ +.++.+ ...++...+++++++||++|.||+++|..|+
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~ 170 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTIL 170 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 689999999999999999988764 4799999999999865 555554 6677778889999999999999999999999
Q ss_pred HHHhcC
Q 032955 78 RKLAGD 83 (130)
Q Consensus 78 ~~i~~~ 83 (130)
..+.+.
T Consensus 171 ~~i~~~ 176 (216)
T PLN03110 171 LEIYHI 176 (216)
T ss_pred HHHHHH
Confidence 988663
No 75
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.57 E-value=3.4e-14 Score=95.41 Aligned_cols=80 Identities=35% Similarity=0.615 Sum_probs=68.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||++++.+|..+..|+..+.+. ..++|+++|+||+|+.. +.+... ...++...+++++++||++|.||+++|+.|
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 68999999999999999888765 25899999999999975 444443 567777788899999999999999999999
Q ss_pred HHHH
Q 032955 77 ARKL 80 (130)
Q Consensus 77 ~~~i 80 (130)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 8764
No 76
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.56 E-value=4.7e-14 Score=95.75 Aligned_cols=82 Identities=30% Similarity=0.566 Sum_probs=70.8
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.||..+..|+..++... +++|+++||||+|+.+ +.++.+ ...++.+.++.++++||++|.||+++|..++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~ 162 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTA 162 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 699999999999999999987763 6899999999999974 445544 5677888889999999999999999999999
Q ss_pred HHHhc
Q 032955 78 RKLAG 82 (130)
Q Consensus 78 ~~i~~ 82 (130)
+.+.+
T Consensus 163 ~~~~~ 167 (168)
T cd01866 163 KEIYE 167 (168)
T ss_pred HHHHh
Confidence 88754
No 77
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.55 E-value=4.3e-14 Score=96.51 Aligned_cols=82 Identities=21% Similarity=0.343 Sum_probs=67.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-ccc--CH-HHHHHHHhcCCcEEEeccCCCCChHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQV--KA-KQVTFHRKKNLQYYEISAKSNYNFEKPFL 74 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v--~~-~~~~~~~~~~~~~~e~Sak~~~~v~~lf~ 74 (130)
|||+++++||..+..|+..+++.. ..+|+++||||+|+.+ +.. .. ++..++.+++.+|+++||++|.||+++|.
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~ 158 (170)
T cd04108 79 VFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFF 158 (170)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 689999999999999999886642 3578999999999864 222 22 35677788888999999999999999999
Q ss_pred HHHHHHhc
Q 032955 75 YLARKLAG 82 (130)
Q Consensus 75 ~l~~~i~~ 82 (130)
.|++.+.+
T Consensus 159 ~l~~~~~~ 166 (170)
T cd04108 159 RVAALTFE 166 (170)
T ss_pred HHHHHHHH
Confidence 99998754
No 78
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.55 E-value=7.2e-14 Score=96.72 Aligned_cols=85 Identities=27% Similarity=0.460 Sum_probs=71.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-----cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-----RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFL 74 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-----~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~ 74 (130)
|||++++.||+.+..|+..+.....++|+++|+||+|+.+ +.+... ...++..++.+++++||++|.||+++|.
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 80 CYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 6899999999999999999887666899999999999853 233333 5567777888999999999999999999
Q ss_pred HHHHHHhcCCC
Q 032955 75 YLARKLAGDPN 85 (130)
Q Consensus 75 ~l~~~i~~~~~ 85 (130)
.|++.+.+...
T Consensus 160 ~i~~~~~~~~~ 170 (193)
T cd04118 160 KVAEDFVSRAN 170 (193)
T ss_pred HHHHHHHHhcc
Confidence 99998876544
No 79
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.55 E-value=5.2e-14 Score=95.68 Aligned_cols=80 Identities=31% Similarity=0.573 Sum_probs=69.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCC---CCChHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKS---NYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~---~~~v~~lf 73 (130)
|||+++++||..+..|+..+.... .++|+++|+||+|+.+ +.++.. +..++...+++|+++||++ +.||+++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 699999999999999999888753 5799999999999875 555544 6678888889999999999 89999999
Q ss_pred HHHHHHH
Q 032955 74 LYLARKL 80 (130)
Q Consensus 74 ~~l~~~i 80 (130)
..+++.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9999866
No 80
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.54 E-value=4.9e-14 Score=96.06 Aligned_cols=78 Identities=22% Similarity=0.411 Sum_probs=65.3
Q ss_pred CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCC-------------cccCHH-HHHHHHhcCC-cEEEeccC
Q 032955 1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKAK-QVTFHRKKNL-QYYEISAK 64 (130)
Q Consensus 1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~-------------~~v~~~-~~~~~~~~~~-~~~e~Sak 64 (130)
|||+++++||+.+. .|+..+....+++|+++||||+|+.. +.+..+ +..++.+.+. .|+++||+
T Consensus 78 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~ 157 (173)
T cd04130 78 CFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSAL 157 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCC
Confidence 68999999999985 69988876656899999999999853 344444 6778888887 89999999
Q ss_pred CCCChHHHHHHHHH
Q 032955 65 SNYNFEKPFLYLAR 78 (130)
Q Consensus 65 ~~~~v~~lf~~l~~ 78 (130)
+|.||+++|..++.
T Consensus 158 ~~~~v~~lf~~~~~ 171 (173)
T cd04130 158 TQKNLKEVFDTAIL 171 (173)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999988764
No 81
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.54 E-value=6e-14 Score=95.32 Aligned_cols=80 Identities=21% Similarity=0.390 Sum_probs=66.7
Q ss_pred CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCc-------------ccCHH-HHHHHHhcCC-cEEEeccC
Q 032955 1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKKNL-QYYEISAK 64 (130)
Q Consensus 1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~-------------~v~~~-~~~~~~~~~~-~~~e~Sak 64 (130)
|||++++.||+.+. .|+..+....++.|+++||||+|+.+. .++.+ +..+++..+. .||++||+
T Consensus 78 v~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 157 (174)
T cd04135 78 CFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSAL 157 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCC
Confidence 68999999999996 698888766678999999999998542 34433 6677888875 69999999
Q ss_pred CCCChHHHHHHHHHHH
Q 032955 65 SNYNFEKPFLYLARKL 80 (130)
Q Consensus 65 ~~~~v~~lf~~l~~~i 80 (130)
+|.||+++|..++..+
T Consensus 158 ~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 158 TQKGLKTVFDEAILAI 173 (174)
T ss_pred cCCCHHHHHHHHHHHh
Confidence 9999999999999875
No 82
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.54 E-value=6.3e-14 Score=94.11 Aligned_cols=80 Identities=34% Similarity=0.600 Sum_probs=68.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|..+..|+..++... +++|+++|+||+|+.. +.+..+ ...++...++.++++||++|.|++++|.+++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~ 158 (161)
T cd04113 79 VYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCA 158 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 699999999999999999887654 6899999999999975 444444 6677888889999999999999999999998
Q ss_pred HHH
Q 032955 78 RKL 80 (130)
Q Consensus 78 ~~i 80 (130)
+.+
T Consensus 159 ~~~ 161 (161)
T cd04113 159 RSI 161 (161)
T ss_pred HhC
Confidence 753
No 83
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.53 E-value=1e-13 Score=93.63 Aligned_cols=79 Identities=32% Similarity=0.580 Sum_probs=66.6
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCC-cEEEeccCCCCChHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNL-QYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l 76 (130)
|||++++.||..+..|+..+.... .++|+++|+||+|+.+ +.+... +..+++..+. .++++||++|.|++++|..+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 689999999999999999988754 5899999999999965 444443 6677777775 68999999999999999999
Q ss_pred HHH
Q 032955 77 ARK 79 (130)
Q Consensus 77 ~~~ 79 (130)
++.
T Consensus 162 ~~~ 164 (165)
T cd01864 162 ATE 164 (165)
T ss_pred HHh
Confidence 865
No 84
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.52 E-value=1.5e-13 Score=92.10 Aligned_cols=82 Identities=35% Similarity=0.643 Sum_probs=71.1
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|+.+..|+..+..+. +++|+++|+||+|+.. +.+..+ ...++...+++++++||++|.|++++|..|+
T Consensus 79 v~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~ 158 (164)
T smart00175 79 VYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELA 158 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 689999999999999999988775 6899999999999875 445544 6677888889999999999999999999999
Q ss_pred HHHhc
Q 032955 78 RKLAG 82 (130)
Q Consensus 78 ~~i~~ 82 (130)
+.+.+
T Consensus 159 ~~~~~ 163 (164)
T smart00175 159 REILK 163 (164)
T ss_pred HHHhh
Confidence 88754
No 85
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.51 E-value=6.5e-14 Score=97.39 Aligned_cols=85 Identities=25% Similarity=0.483 Sum_probs=73.8
Q ss_pred CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCc-------------ccCHH-HHHHHHhcC-CcEEEeccC
Q 032955 1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKKN-LQYYEISAK 64 (130)
Q Consensus 1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~-------------~v~~~-~~~~~~~~~-~~~~e~Sak 64 (130)
||++.+++||+++. +|+.++.++++++|+||||+|.||... .++.+ +..++++.| ..|+|+||+
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~ 162 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSAL 162 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhh
Confidence 58999999999985 599999999999999999999999741 23433 678889988 679999999
Q ss_pred CCCChHHHHHHHHHHHhcCCC
Q 032955 65 SNYNFEKPFLYLARKLAGDPN 85 (130)
Q Consensus 65 ~~~~v~~lf~~l~~~i~~~~~ 85 (130)
+..|+.++|+..++.++....
T Consensus 163 tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 163 TQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhCCcHHHHHHHHHHHhcccc
Confidence 999999999999999877654
No 86
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.50 E-value=2.7e-13 Score=91.91 Aligned_cols=81 Identities=28% Similarity=0.587 Sum_probs=67.8
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcC-CcEEEeccCCCCChHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKPFLY 75 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~-~~~~e~Sak~~~~v~~lf~~ 75 (130)
|||++++++|+.+..|...+.+. ..+.|+++|+||.|+.+ +.+..+ ...+++.++ .+++++||++|.||+++|.+
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~ 158 (168)
T cd04177 79 VYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFID 158 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHH
Confidence 68999999999999999988764 35899999999999865 444443 556777777 78999999999999999999
Q ss_pred HHHHHh
Q 032955 76 LARKLA 81 (130)
Q Consensus 76 l~~~i~ 81 (130)
+++.+.
T Consensus 159 i~~~~~ 164 (168)
T cd04177 159 LVRQII 164 (168)
T ss_pred HHHHHh
Confidence 997653
No 87
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.50 E-value=3.6e-13 Score=90.18 Aligned_cols=81 Identities=32% Similarity=0.587 Sum_probs=68.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||++++.+|..+..|...+.... .++|+++|+||+|+.+ +..... ...++++++.+++++||++|.|++++|..+
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 157 (164)
T cd04139 78 VFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDL 157 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHH
Confidence 589999999999999998888763 5899999999999975 334433 456777788999999999999999999999
Q ss_pred HHHHh
Q 032955 77 ARKLA 81 (130)
Q Consensus 77 ~~~i~ 81 (130)
+..+.
T Consensus 158 ~~~~~ 162 (164)
T cd04139 158 VREIR 162 (164)
T ss_pred HHHHH
Confidence 98764
No 88
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.49 E-value=3.5e-13 Score=90.36 Aligned_cols=79 Identities=37% Similarity=0.590 Sum_probs=68.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.||..+..|+..+.... .++|+++||||+|+....+..+ ...++...+++++++||++|.|++++|..+.
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~ 158 (161)
T cd01863 79 VYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELV 158 (161)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence 689999999999999999988764 5899999999999976554443 5677788889999999999999999999987
Q ss_pred HH
Q 032955 78 RK 79 (130)
Q Consensus 78 ~~ 79 (130)
+.
T Consensus 159 ~~ 160 (161)
T cd01863 159 EK 160 (161)
T ss_pred Hh
Confidence 64
No 89
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.48 E-value=4.4e-13 Score=91.13 Aligned_cols=80 Identities=30% Similarity=0.553 Sum_probs=64.7
Q ss_pred CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCc-------------ccCH-HHHHHHHhcC-CcEEEeccC
Q 032955 1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKN-LQYYEISAK 64 (130)
Q Consensus 1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~-------------~v~~-~~~~~~~~~~-~~~~e~Sak 64 (130)
|||+++++||+.+. .|...+.+...+.|+++|+||+|+... .+.. .+..++...+ ..+++|||+
T Consensus 79 v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 79 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 58999999999995 599888876678999999999998542 1222 2556676666 479999999
Q ss_pred CCCChHHHHHHHHHHH
Q 032955 65 SNYNFEKPFLYLARKL 80 (130)
Q Consensus 65 ~~~~v~~lf~~l~~~i 80 (130)
+|.||+++|.+|++.+
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998765
No 90
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.47 E-value=4.7e-13 Score=96.72 Aligned_cols=80 Identities=29% Similarity=0.473 Sum_probs=65.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh----------CCCCcEEEEecCCCCCC-cccCHH-HHHHHHh-cCCcEEEeccCCCC
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV----------CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRK-KNLQYYEISAKSNY 67 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~----------~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~-~~~~~~e~Sak~~~ 67 (130)
|||+++++||+.+..|..++... ..++|+|+||||+|+.. +.+... ...++.. .++.++++||++|.
T Consensus 78 Vfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~ 157 (247)
T cd04143 78 VFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNS 157 (247)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCC
Confidence 79999999999999999888653 14799999999999975 555544 4455443 35789999999999
Q ss_pred ChHHHHHHHHHHH
Q 032955 68 NFEKPFLYLARKL 80 (130)
Q Consensus 68 ~v~~lf~~l~~~i 80 (130)
||+++|..|+..+
T Consensus 158 gI~elf~~L~~~~ 170 (247)
T cd04143 158 NLDEMFRALFSLA 170 (247)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999999865
No 91
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.47 E-value=3e-13 Score=91.96 Aligned_cols=85 Identities=15% Similarity=0.155 Sum_probs=65.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHH-HHHHHHhcC------CcEEEeccCCCCChHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKN------LQYYEISAKSNYNFEK 71 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~------~~~~e~Sak~~~~v~~ 71 (130)
|||++++++|..+..|+..+.+. ..+.|+++|+||+|+... ++.+ ...++...+ +.++++||++|.||++
T Consensus 73 V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 151 (169)
T cd04158 73 VVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA-LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYE 151 (169)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC-CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHH
Confidence 68999999999999998887653 246899999999999643 3333 444443221 3588999999999999
Q ss_pred HHHHHHHHHhcCCCC
Q 032955 72 PFLYLARKLAGDPNL 86 (130)
Q Consensus 72 lf~~l~~~i~~~~~~ 86 (130)
+|.+|++.+......
T Consensus 152 ~f~~l~~~~~~~~~~ 166 (169)
T cd04158 152 GLDWLSRQLVAAGVL 166 (169)
T ss_pred HHHHHHHHHhhcccc
Confidence 999999888765543
No 92
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.47 E-value=5.4e-13 Score=90.35 Aligned_cols=82 Identities=22% Similarity=0.378 Sum_probs=64.3
Q ss_pred CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCcccC----HHHHHHHHhcC--CcEEEeccCCCCChHHHH
Q 032955 1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFHRKKN--LQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~~v~----~~~~~~~~~~~--~~~~e~Sak~~~~v~~lf 73 (130)
|||++++.||+.+. .|+..++....++|+++|+||+|+.+.... .....++..++ ..++++||++|.|++++|
T Consensus 77 v~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 156 (166)
T cd01893 77 VYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVF 156 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHH
Confidence 68999999999985 698888776678999999999999763321 11223333333 379999999999999999
Q ss_pred HHHHHHHhc
Q 032955 74 LYLARKLAG 82 (130)
Q Consensus 74 ~~l~~~i~~ 82 (130)
..+.+.+.+
T Consensus 157 ~~~~~~~~~ 165 (166)
T cd01893 157 YYAQKAVLH 165 (166)
T ss_pred HHHHHHhcC
Confidence 999988765
No 93
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=7.2e-14 Score=92.88 Aligned_cols=82 Identities=29% Similarity=0.579 Sum_probs=71.6
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++-..||+.+..|+.++.++. ..+-.|+||||+|+.+ +.++.. +.+|.....+.|+++||++..||+.+|..++
T Consensus 86 vydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a 165 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLA 165 (213)
T ss_pred EEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHH
Confidence 699999999999999999999985 5788899999999987 577766 7788777677899999999999999999998
Q ss_pred HHHhc
Q 032955 78 RKLAG 82 (130)
Q Consensus 78 ~~i~~ 82 (130)
..+..
T Consensus 166 ~rli~ 170 (213)
T KOG0095|consen 166 CRLIS 170 (213)
T ss_pred HHHHH
Confidence 76544
No 94
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.46 E-value=8.2e-13 Score=88.18 Aligned_cols=80 Identities=29% Similarity=0.574 Sum_probs=67.9
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++++|+.+..|+..+.... .++|+++|+||+|+.. +.+... ...++...+..++++||++|.|++++|++|+
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~ 158 (162)
T cd04123 79 VYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLA 158 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 689999999999999999888764 3799999999999875 444443 5567777889999999999999999999998
Q ss_pred HHH
Q 032955 78 RKL 80 (130)
Q Consensus 78 ~~i 80 (130)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04123 159 KRM 161 (162)
T ss_pred HHh
Confidence 765
No 95
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.46 E-value=9.1e-13 Score=88.43 Aligned_cols=80 Identities=33% Similarity=0.602 Sum_probs=68.6
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++++|..+..|+..+.... .++|+++|+||+|+.. +.+... ...++...+..++++||++|.|+.++|.+|+
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd01860 80 VYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIA 159 (163)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999988765 6799999999999874 444443 5567777888999999999999999999999
Q ss_pred HHH
Q 032955 78 RKL 80 (130)
Q Consensus 78 ~~i 80 (130)
+.+
T Consensus 160 ~~l 162 (163)
T cd01860 160 KKL 162 (163)
T ss_pred HHh
Confidence 875
No 96
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.46 E-value=7e-13 Score=88.82 Aligned_cols=79 Identities=30% Similarity=0.482 Sum_probs=66.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||+++++||..+..|+..+.... .++|+++|+||+|+.+ +.+..+ ...++...+..++++||++|.|++++|.+|+
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 158 (161)
T cd01861 79 VYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIA 158 (161)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHH
Confidence 689999999999999999887654 3699999999999954 444444 5566777789999999999999999999998
Q ss_pred HH
Q 032955 78 RK 79 (130)
Q Consensus 78 ~~ 79 (130)
+.
T Consensus 159 ~~ 160 (161)
T cd01861 159 SA 160 (161)
T ss_pred Hh
Confidence 64
No 97
>PLN03118 Rab family protein; Provisional
Probab=99.45 E-value=1.5e-12 Score=91.64 Aligned_cols=84 Identities=31% Similarity=0.483 Sum_probs=69.0
Q ss_pred CeecCcHHHHHhHHH-HHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHH
Q 032955 1 MFDVTARLTYKNVPT-WHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLY 75 (130)
Q Consensus 1 V~d~~~~~s~~~~~~-~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~ 75 (130)
|||+++++||..+.. |...+.... .+.|+++||||+|+.. +.+... ...++.+.++.||++||++|.|++++|..
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~ 171 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEE 171 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 699999999999976 777665543 4689999999999965 445443 56777788899999999999999999999
Q ss_pred HHHHHhcCC
Q 032955 76 LARKLAGDP 84 (130)
Q Consensus 76 l~~~i~~~~ 84 (130)
|+..+....
T Consensus 172 l~~~~~~~~ 180 (211)
T PLN03118 172 LALKIMEVP 180 (211)
T ss_pred HHHHHHhhh
Confidence 999887653
No 98
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.44 E-value=1.3e-12 Score=88.19 Aligned_cols=80 Identities=33% Similarity=0.612 Sum_probs=66.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|..+..|+..+.... .++|+++|+||+|+.+ +.+... ...+.......++++||++|.|++++|..|+
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence 689999999999999998887764 4799999999999864 455544 4556666667899999999999999999999
Q ss_pred HHH
Q 032955 78 RKL 80 (130)
Q Consensus 78 ~~i 80 (130)
+.+
T Consensus 166 ~~~ 168 (169)
T cd04114 166 CRL 168 (169)
T ss_pred HHh
Confidence 764
No 99
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.44 E-value=1.7e-12 Score=87.68 Aligned_cols=83 Identities=31% Similarity=0.596 Sum_probs=68.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCC-----CCcEEEEecCCCCCC-cccCHH-HHHHHHhcC-CcEEEeccCCCCChHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKP 72 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~-----~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~-~~~~e~Sak~~~~v~~l 72 (130)
|||++++.+|..+..|...+..... ++|+++|+||+|+.. +.+..+ ...++...+ .++|++||++|.|++++
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 158 (172)
T cd01862 79 VYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQA 158 (172)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHH
Confidence 6899999999999999988766543 799999999999973 333333 456677776 78999999999999999
Q ss_pred HHHHHHHHhcC
Q 032955 73 FLYLARKLAGD 83 (130)
Q Consensus 73 f~~l~~~i~~~ 83 (130)
|..+.+.+.+.
T Consensus 159 ~~~i~~~~~~~ 169 (172)
T cd01862 159 FETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHhc
Confidence 99999988765
No 100
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.41 E-value=9.8e-13 Score=89.64 Aligned_cols=80 Identities=19% Similarity=0.243 Sum_probs=64.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCH-HHHHHHHhcCC-cEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~-~~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|+.+..|+..+... .++|+++|+||+|+.+ +.+.. ....++..+++ .++++||++|.|++++|..|+
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~ 162 (169)
T cd01892 84 VYDSSDPKSFSYCAEVYKKYFML-GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLA 162 (169)
T ss_pred EEeCCCHHHHHHHHHHHHHhccC-CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHH
Confidence 68999999999999999866432 4799999999999964 33322 24567777776 479999999999999999999
Q ss_pred HHHh
Q 032955 78 RKLA 81 (130)
Q Consensus 78 ~~i~ 81 (130)
+.+.
T Consensus 163 ~~~~ 166 (169)
T cd01892 163 TAAQ 166 (169)
T ss_pred HHhh
Confidence 8875
No 101
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.41 E-value=7.4e-13 Score=90.20 Aligned_cols=78 Identities=12% Similarity=0.068 Sum_probs=58.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHHHH-----hcCCcEEEeccCCCCChHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~~-----~~~~~~~e~Sak~~~~v~~lf 73 (130)
|||++++.+|..+..|+..+... ..++|++||+||+|+.+.....+...++. ...+.+|++||++|.||+++|
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~ 162 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGL 162 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHH
Confidence 79999999999998887766542 25799999999999965321222333321 123468999999999999999
Q ss_pred HHHHH
Q 032955 74 LYLAR 78 (130)
Q Consensus 74 ~~l~~ 78 (130)
.+|++
T Consensus 163 ~~l~~ 167 (168)
T cd04149 163 TWLSS 167 (168)
T ss_pred HHHhc
Confidence 99864
No 102
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.40 E-value=2.9e-12 Score=85.34 Aligned_cols=80 Identities=33% Similarity=0.598 Sum_probs=67.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCC--CCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~--~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||+++++++..+..|...+..... .+|+++|+||+|+.. +.+..+ +..++..++.+++++||++|.|++++|+.|
T Consensus 77 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l 156 (160)
T cd00876 77 VYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLL 156 (160)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHH
Confidence 6899999999999999888877654 899999999999876 444443 567777778899999999999999999999
Q ss_pred HHHH
Q 032955 77 ARKL 80 (130)
Q Consensus 77 ~~~i 80 (130)
++.+
T Consensus 157 ~~~i 160 (160)
T cd00876 157 VREI 160 (160)
T ss_pred HhhC
Confidence 8753
No 103
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.38 E-value=2.8e-12 Score=88.50 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=60.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHHHHhcCC--------cEEEeccCCCCChH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--------QYYEISAKSNYNFE 70 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~--------~~~e~Sak~~~~v~ 70 (130)
|||++++++|..+..|+..+... ..++|+++|+||+|+.+.. +. .++...+++ .++++||++|+||.
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~-~~--~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NA--AEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC-CH--HHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 78999999999988877766432 2589999999999997532 22 222223332 35689999999999
Q ss_pred HHHHHHHHHHhcC
Q 032955 71 KPFLYLARKLAGD 83 (130)
Q Consensus 71 ~lf~~l~~~i~~~ 83 (130)
++|.+|+..+.++
T Consensus 168 e~~~~l~~~~~~~ 180 (181)
T PLN00223 168 EGLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999887653
No 104
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.37 E-value=6.9e-13 Score=89.99 Aligned_cols=77 Identities=16% Similarity=0.127 Sum_probs=62.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCH-----HHHHHHHhcCCcEEEeccCC------CCC
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKA-----KQVTFHRKKNLQYYEISAKS------NYN 68 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~-----~~~~~~~~~~~~~~e~Sak~------~~~ 68 (130)
|||.+++.+|..+..|+..+.....++|+++||||+|+.. +.++. .+..++++.++.+|++||++ ++|
T Consensus 74 V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~ 153 (164)
T cd04162 74 VVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEA 153 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHH
Confidence 6899999999999999888865557899999999999875 32221 12355666778899999998 999
Q ss_pred hHHHHHHHH
Q 032955 69 FEKPFLYLA 77 (130)
Q Consensus 69 v~~lf~~l~ 77 (130)
|.++|..++
T Consensus 154 v~~~~~~~~ 162 (164)
T cd04162 154 VKDLLSQLI 162 (164)
T ss_pred HHHHHHHHh
Confidence 999999875
No 105
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.37 E-value=2.2e-12 Score=89.94 Aligned_cols=81 Identities=31% Similarity=0.399 Sum_probs=64.9
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC--cccCHH-HHHHHH-hcCCcEEEeccCCCCChHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN--RQVKAK-QVTFHR-KKNLQYYEISAKSNYNFEKPFL 74 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~--~~v~~~-~~~~~~-~~~~~~~e~Sak~~~~v~~lf~ 74 (130)
|||++++.+|+.+..|+..+.... .++|+++|+||.|+.. +.+... ...... .++..++++||++|.||+++|.
T Consensus 77 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 77 VYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHH
Confidence 689999999999999998887764 4799999999999854 334332 233332 4467899999999999999999
Q ss_pred HHHHHHh
Q 032955 75 YLARKLA 81 (130)
Q Consensus 75 ~l~~~i~ 81 (130)
++++.+.
T Consensus 157 ~l~~~~~ 163 (198)
T cd04147 157 ELLRQAN 163 (198)
T ss_pred HHHHHhh
Confidence 9999775
No 106
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.37 E-value=2.5e-12 Score=87.62 Aligned_cols=78 Identities=13% Similarity=0.136 Sum_probs=59.6
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHHHH-----hcCCcEEEeccCCCCChHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~~-----~~~~~~~e~Sak~~~~v~~lf 73 (130)
|||++++.+|..+..|+..+... ..++|+++|+||+|+.+.....+...++. ..++++|++||++|.|++++|
T Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 167 (173)
T cd04154 88 VVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGI 167 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHH
Confidence 68999999999998888776543 26899999999999965322222333332 335689999999999999999
Q ss_pred HHHHH
Q 032955 74 LYLAR 78 (130)
Q Consensus 74 ~~l~~ 78 (130)
.+|+.
T Consensus 168 ~~l~~ 172 (173)
T cd04154 168 DWLVD 172 (173)
T ss_pred HHHhc
Confidence 98864
No 107
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.37 E-value=1.2e-11 Score=84.55 Aligned_cols=85 Identities=29% Similarity=0.440 Sum_probs=69.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
|||+++..+|..+..|...+.+.. .+.|+++|+||+|+.. +.+... ...++..++.+++++||++|.|+.++|.++
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 158 (180)
T cd04137 79 VYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELL 158 (180)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 689999999999999887776643 4789999999999864 334433 456677778889999999999999999999
Q ss_pred HHHHhcCCC
Q 032955 77 ARKLAGDPN 85 (130)
Q Consensus 77 ~~~i~~~~~ 85 (130)
.+.+.+...
T Consensus 159 ~~~~~~~~~ 167 (180)
T cd04137 159 IEEIEKVEN 167 (180)
T ss_pred HHHHHHhcC
Confidence 998876543
No 108
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.34 E-value=3.9e-12 Score=85.81 Aligned_cols=78 Identities=15% Similarity=0.148 Sum_probs=56.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHH-HHHHH----HhcCCcEEEeccCCCCChHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK-QVTFH----RKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~-~~~~~----~~~~~~~~e~Sak~~~~v~~lf 73 (130)
|||++++.+|..+..|+..+... ..++|+++|+||+|+.+.....+ ...+. ...++.++++||++|.||+++|
T Consensus 74 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 74 VVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 68999999999998877766542 24789999999999965322122 22221 1223457899999999999999
Q ss_pred HHHHH
Q 032955 74 LYLAR 78 (130)
Q Consensus 74 ~~l~~ 78 (130)
++|+.
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 109
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.34 E-value=4.2e-12 Score=85.67 Aligned_cols=79 Identities=14% Similarity=0.193 Sum_probs=59.5
Q ss_pred CeecCcHHHH--HhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|+|++++.+| +....|+..+.....+.|+++|+||+|+.+ +.+.. ...+....+.++|++||++|.|++++|+++.
T Consensus 86 v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (168)
T cd01897 86 LFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE-IEEEEELEGEEVLKISTLTEEGVDEVKNKAC 164 (168)
T ss_pred EEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH-HHHhhhhccCceEEEEecccCCHHHHHHHHH
Confidence 5788876543 556678888776556899999999999865 22221 3344444567899999999999999999998
Q ss_pred HHH
Q 032955 78 RKL 80 (130)
Q Consensus 78 ~~i 80 (130)
+.+
T Consensus 165 ~~~ 167 (168)
T cd01897 165 ELL 167 (168)
T ss_pred HHh
Confidence 875
No 110
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.33 E-value=8.2e-12 Score=84.30 Aligned_cols=78 Identities=24% Similarity=0.513 Sum_probs=63.4
Q ss_pred CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCcc------------cCHH-HHHHHHhcCC-cEEEeccCC
Q 032955 1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------------VKAK-QVTFHRKKNL-QYYEISAKS 65 (130)
Q Consensus 1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~~------------v~~~-~~~~~~~~~~-~~~e~Sak~ 65 (130)
|||++++.+|.... .|+..+.....++|+++||||+|+.... +... +..++...+. +|+++||++
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (171)
T cd00157 78 CFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALT 157 (171)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCC
Confidence 68999999998875 4888887776789999999999986522 2222 4567777776 899999999
Q ss_pred CCChHHHHHHHHH
Q 032955 66 NYNFEKPFLYLAR 78 (130)
Q Consensus 66 ~~~v~~lf~~l~~ 78 (130)
|.|++++|..|++
T Consensus 158 ~~gi~~l~~~i~~ 170 (171)
T cd00157 158 QEGVKEVFEEAIR 170 (171)
T ss_pred CCCHHHHHHHHhh
Confidence 9999999998875
No 111
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.33 E-value=1.4e-12 Score=89.14 Aligned_cols=83 Identities=28% Similarity=0.492 Sum_probs=72.6
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
||+.+++.||+.+..|++.+...+..+|.++|.||+||.+ ..+... .+.+++..+..++.+|++...||..+|..|+.
T Consensus 99 VFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLae 178 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAE 178 (246)
T ss_pred EEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 6899999999999999999999889999999999999976 333333 56778888889999999999999999999998
Q ss_pred HHhcC
Q 032955 79 KLAGD 83 (130)
Q Consensus 79 ~i~~~ 83 (130)
.+.++
T Consensus 179 K~~q~ 183 (246)
T KOG4252|consen 179 KLTQQ 183 (246)
T ss_pred HHHHH
Confidence 76553
No 112
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.33 E-value=9.7e-12 Score=85.80 Aligned_cols=84 Identities=12% Similarity=0.107 Sum_probs=60.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHH-----HHhcCCcEEEeccCCCCChHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~-----~~~~~~~~~e~Sak~~~~v~~lf 73 (130)
|||++++++|..+..|+..+... ..++|+++|+||.|+.+.....+.... +....+.++++||++|.||+++|
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~ 170 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGL 170 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHH
Confidence 68999999999998877766432 247899999999998642211121111 11122346799999999999999
Q ss_pred HHHHHHHhcCC
Q 032955 74 LYLARKLAGDP 84 (130)
Q Consensus 74 ~~l~~~i~~~~ 84 (130)
.+|++.+.+++
T Consensus 171 ~~l~~~i~~~~ 181 (182)
T PTZ00133 171 DWLSANIKKSM 181 (182)
T ss_pred HHHHHHHHHhc
Confidence 99999887654
No 113
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.33 E-value=9.6e-12 Score=85.17 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=58.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHHH-----HhcCCcEEEeccCCCCChHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~-----~~~~~~~~e~Sak~~~~v~~lf 73 (130)
|||++++++|+.+..|+..+... ..++|+++||||+|+.+.....+..... ....+.++++||++|.||+++|
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~ 166 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGL 166 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHH
Confidence 68999999999999888776542 2579999999999996522111111111 1122347789999999999999
Q ss_pred HHHHHHH
Q 032955 74 LYLARKL 80 (130)
Q Consensus 74 ~~l~~~i 80 (130)
.+|...+
T Consensus 167 ~~l~~~~ 173 (175)
T smart00177 167 TWLSNNL 173 (175)
T ss_pred HHHHHHh
Confidence 9998765
No 114
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.31 E-value=1.9e-11 Score=80.79 Aligned_cols=77 Identities=39% Similarity=0.721 Sum_probs=65.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCC-CcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK-NRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~-~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||.++++++..+..|+..+.... .+.|+++|+||+|+. ......+ ...++...+.+++++||++|.|++++|..|+
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 79 VYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 689999999999999999888875 689999999999996 3333333 5677777889999999999999999999876
No 115
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.31 E-value=5.4e-12 Score=91.12 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=60.3
Q ss_pred CeecCcHH-HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955 1 MFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 1 V~d~~~~~-s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
|||++++. ||..+.+|+..+.. .++|+++|+||+||.+ +.+..+.......+++++|++||++|.||+++|..+..
T Consensus 43 V~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 43 VSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHhhhcC
Confidence 68999887 99999999976654 6899999999999964 33332322333457889999999999999999988764
No 116
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.27 E-value=1.7e-11 Score=84.49 Aligned_cols=78 Identities=15% Similarity=0.265 Sum_probs=59.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHH-HHHHHHh----------------cCCcEEEe
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHRK----------------KNLQYYEI 61 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~-~~~~~~~----------------~~~~~~e~ 61 (130)
|||+++..+|.....|+..+.+.. .+.|+++|+||+|+.. .+... ...++.. ..+.+++|
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG-AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMC 171 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC-CcCHHHHHHHhCcccccccccccccccCceeEEEEEe
Confidence 689999999998888888776532 4799999999999864 33333 3444321 22468999
Q ss_pred ccCCCCChHHHHHHHHHH
Q 032955 62 SAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 62 Sak~~~~v~~lf~~l~~~ 79 (130)
||++|.||+++|.+|++.
T Consensus 172 Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 172 SVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EecCCCChHHHHHHHHhh
Confidence 999999999999999864
No 117
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.27 E-value=1.5e-11 Score=82.24 Aligned_cols=78 Identities=18% Similarity=0.244 Sum_probs=57.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC----CCCcEEEEecCCCCCCcccCHHHHHHH-----HhcCCcEEEeccCCCCChHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEK 71 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~----~~~piilv~NK~Dl~~~~v~~~~~~~~-----~~~~~~~~e~Sak~~~~v~~ 71 (130)
|||.+++.+|..+..|+..+.+.. .++|+++|+||+|+.+.....+..... ....+.+|++||++|.|+++
T Consensus 75 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 75 VIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 689999999999988888776531 479999999999986532111111111 11234589999999999999
Q ss_pred HHHHHHH
Q 032955 72 PFLYLAR 78 (130)
Q Consensus 72 lf~~l~~ 78 (130)
+|.+|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.27 E-value=1.1e-11 Score=83.06 Aligned_cols=78 Identities=15% Similarity=0.212 Sum_probs=57.6
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHHHH------HHHHhcCCcEEEeccCCCCChHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKNLQYYEISAKSNYNFEKP 72 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~~~------~~~~~~~~~~~e~Sak~~~~v~~l 72 (130)
|||.+++.+|..+..|+..+.+.. .+.|+++|+||+|+.......+.. .++.+.++++++|||++|.||+++
T Consensus 74 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 153 (160)
T cd04156 74 VVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEA 153 (160)
T ss_pred EEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHH
Confidence 689999999999998888776532 589999999999986421111111 122223456899999999999999
Q ss_pred HHHHHH
Q 032955 73 FLYLAR 78 (130)
Q Consensus 73 f~~l~~ 78 (130)
|++|++
T Consensus 154 ~~~i~~ 159 (160)
T cd04156 154 FRKLAS 159 (160)
T ss_pred HHHHhc
Confidence 999864
No 119
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.26 E-value=3.2e-11 Score=81.37 Aligned_cols=79 Identities=15% Similarity=0.136 Sum_probs=62.2
Q ss_pred CeecCcH-HHHHhHHHHHHHHHHhC---CCCcEEEEecCCCCCCccc-CHHHHHHHHh-cCCcEEEeccCCCCChHHHHH
Q 032955 1 MFDVTAR-LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQV-KAKQVTFHRK-KNLQYYEISAKSNYNFEKPFL 74 (130)
Q Consensus 1 V~d~~~~-~s~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~v-~~~~~~~~~~-~~~~~~e~Sak~~~~v~~lf~ 74 (130)
|||++++ +++..+..|.+.+.... .+.|+++|+||+|+..+.. ......+... .+.+++++||+++.|++++|.
T Consensus 85 v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 164 (170)
T cd01898 85 VIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGLDELLR 164 (170)
T ss_pred EEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHH
Confidence 6899988 79999999999887654 3789999999999865332 2223344444 367899999999999999999
Q ss_pred HHHHH
Q 032955 75 YLARK 79 (130)
Q Consensus 75 ~l~~~ 79 (130)
++++.
T Consensus 165 ~i~~~ 169 (170)
T cd01898 165 KLAEL 169 (170)
T ss_pred HHHhh
Confidence 98864
No 120
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.25 E-value=3.2e-11 Score=90.65 Aligned_cols=82 Identities=18% Similarity=0.172 Sum_probs=65.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC---CCCcEEEEecCCCCCCc-ccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLY 75 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~-~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~ 75 (130)
|+|+++.++++.+..|..++..+. .+.|+++|+||+|+.+. .+... ...++...+.++|++||+++.||+++|.+
T Consensus 243 ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~ 322 (335)
T PRK12299 243 LVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRA 322 (335)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 689998778999999999988764 37899999999998652 22222 33344556688999999999999999999
Q ss_pred HHHHHhc
Q 032955 76 LARKLAG 82 (130)
Q Consensus 76 l~~~i~~ 82 (130)
|.+.+..
T Consensus 323 L~~~l~~ 329 (335)
T PRK12299 323 LWELLEE 329 (335)
T ss_pred HHHHHHh
Confidence 9988764
No 121
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.24 E-value=3.7e-11 Score=82.81 Aligned_cols=81 Identities=12% Similarity=0.128 Sum_probs=61.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHH-HHHHHH--hc----CCcEEEeccCCCCChHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHR--KK----NLQYYEISAKSNYNFEK 71 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~-~~~~~~--~~----~~~~~e~Sak~~~~v~~ 71 (130)
|||.+++.+|..+..|+.++.... .+.|+++|+||+|+.+. +... ...++. +. +.+++++||++|.||++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~ 160 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA-LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQE 160 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc-CCHHHHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence 689999999999999988877643 47999999999998642 2222 222221 11 24588999999999999
Q ss_pred HHHHHHHHHhc
Q 032955 72 PFLYLARKLAG 82 (130)
Q Consensus 72 lf~~l~~~i~~ 82 (130)
+|.+|++.+.+
T Consensus 161 l~~~l~~~l~~ 171 (183)
T cd04152 161 GLEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHHH
Confidence 99999988864
No 122
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.24 E-value=3e-11 Score=82.57 Aligned_cols=78 Identities=14% Similarity=0.114 Sum_probs=57.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHH-HHHHH----HhcCCcEEEeccCCCCChHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFH----RKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~-~~~~~----~~~~~~~~e~Sak~~~~v~~lf 73 (130)
|||++++++|..+..|+..+.+.. .++|+++++||+|+.+..-..+ ...+. ...+++++++||++|.||+++|
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~ 168 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGL 168 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHH
Confidence 689999999998888777665432 4799999999999865221112 12221 2334579999999999999999
Q ss_pred HHHHH
Q 032955 74 LYLAR 78 (130)
Q Consensus 74 ~~l~~ 78 (130)
++|++
T Consensus 169 ~~l~~ 173 (174)
T cd04153 169 DWIAS 173 (174)
T ss_pred HHHhc
Confidence 99874
No 123
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.23 E-value=2.3e-11 Score=80.10 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=53.9
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-HHHHHHhcCC-cEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNL-QYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||++++.+|.. ..|...+ ..|+++|+||+|+.++....+ ...+++..+. ++|++||++|.|++++|..++
T Consensus 69 v~d~~~~~s~~~-~~~~~~~-----~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 69 VQSATDPESRFP-PGFASIF-----VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred EecCCCCCcCCC-hhHHHhc-----cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 689999988765 3455432 249999999999975444433 4566777665 799999999999999999874
No 124
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.21 E-value=6.5e-11 Score=79.75 Aligned_cols=78 Identities=15% Similarity=0.237 Sum_probs=58.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHHHHh-------cCCcEEEeccCCCCChHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-------KNLQYYEISAKSNYNFEK 71 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~~~-------~~~~~~e~Sak~~~~v~~ 71 (130)
|||.++++++.....|+..+.+. ..++|+++|+||+|+.......+...+... .+.+++++||++|.|+++
T Consensus 80 vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 159 (167)
T cd04160 80 VIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVRE 159 (167)
T ss_pred EEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHH
Confidence 68888888999888888877653 258999999999998653221222333221 235799999999999999
Q ss_pred HHHHHHH
Q 032955 72 PFLYLAR 78 (130)
Q Consensus 72 lf~~l~~ 78 (130)
+|++|++
T Consensus 160 ~~~~l~~ 166 (167)
T cd04160 160 GIEWLVE 166 (167)
T ss_pred HHHHHhc
Confidence 9999874
No 125
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.17 E-value=1.8e-10 Score=76.97 Aligned_cols=78 Identities=13% Similarity=0.162 Sum_probs=58.9
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHHH-----HhcCCcEEEeccCCCCChHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~-----~~~~~~~~e~Sak~~~~v~~lf 73 (130)
|||++++++|.....|+..+... ..+.|+++|+||+|+.......+..... .....+++++||++|.|++++|
T Consensus 73 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 152 (158)
T cd00878 73 VVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGL 152 (158)
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHH
Confidence 68999999999998888776654 2589999999999986533111222221 2234579999999999999999
Q ss_pred HHHHH
Q 032955 74 LYLAR 78 (130)
Q Consensus 74 ~~l~~ 78 (130)
..|+.
T Consensus 153 ~~l~~ 157 (158)
T cd00878 153 DWLLQ 157 (158)
T ss_pred HHHhh
Confidence 99875
No 126
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.16 E-value=1.4e-10 Score=78.95 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=55.9
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCC---cEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~---~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||+++..++.....|..... .++|+++|+||+|+.+.........+++.+++ .+|++||++|.||+++|.+|+
T Consensus 97 v~D~~~~~~~~~~~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (179)
T cd01890 97 LVDATQGVEAQTLANFYLALE---NNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIV 173 (179)
T ss_pred EEECCCCccHhhHHHHHHHHH---cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHH
Confidence 688888767776666654322 47899999999998642211113355555565 389999999999999999998
Q ss_pred HHH
Q 032955 78 RKL 80 (130)
Q Consensus 78 ~~i 80 (130)
+.+
T Consensus 174 ~~~ 176 (179)
T cd01890 174 ERI 176 (179)
T ss_pred hhC
Confidence 765
No 127
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.15 E-value=2.6e-10 Score=76.45 Aligned_cols=78 Identities=13% Similarity=0.162 Sum_probs=54.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHH-HHH----HhcCCcEEEeccCCCCChHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFH----RKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~-~~~----~~~~~~~~e~Sak~~~~v~~lf 73 (130)
|||++++.+|.....|+..+.+. ..+.|+++|+||+|+.+.....+.. .+. ...+.++|++||++|.||+++|
T Consensus 73 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 152 (158)
T cd04151 73 VVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGM 152 (158)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHH
Confidence 68999988888777766544332 2579999999999986422111111 111 1123469999999999999999
Q ss_pred HHHHH
Q 032955 74 LYLAR 78 (130)
Q Consensus 74 ~~l~~ 78 (130)
++|++
T Consensus 153 ~~l~~ 157 (158)
T cd04151 153 DWLVN 157 (158)
T ss_pred HHHhc
Confidence 99875
No 128
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.12 E-value=1.1e-10 Score=79.29 Aligned_cols=78 Identities=19% Similarity=0.166 Sum_probs=58.6
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHH------HHHHHHhcC--CcEEEeccCCC----
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK------QVTFHRKKN--LQYYEISAKSN---- 66 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~------~~~~~~~~~--~~~~e~Sak~~---- 66 (130)
|||.+++.+|..+..|+..+.+.. .++|+++|+||+|+.+.....+ ...++.+.+ +.+++|||++|
T Consensus 73 V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~ 152 (167)
T cd04161 73 VVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKK 152 (167)
T ss_pred EEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCc
Confidence 689999999999999998887643 4899999999999976221111 112333333 45788999998
Q ss_pred --CChHHHHHHHHH
Q 032955 67 --YNFEKPFLYLAR 78 (130)
Q Consensus 67 --~~v~~lf~~l~~ 78 (130)
.|+.+.|+||..
T Consensus 153 ~~~g~~~~~~wl~~ 166 (167)
T cd04161 153 IDPSIVEGLRWLLA 166 (167)
T ss_pred cccCHHHHHHHHhc
Confidence 899999999974
No 129
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.11 E-value=3.9e-10 Score=84.69 Aligned_cols=80 Identities=16% Similarity=0.229 Sum_probs=62.2
Q ss_pred CeecCcH---HHHHhHHHHHHHHHHhC---CCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHH
Q 032955 1 MFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~---~s~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf 73 (130)
|+|+++. ++++.+..|.+++..+. .+.|+++|+||+|+.+...... ...+++..+.+++++||+++.||+++|
T Consensus 242 VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~ 321 (329)
T TIGR02729 242 LIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGEGLDELL 321 (329)
T ss_pred EEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHH
Confidence 5788876 68888888888887653 4789999999999965322122 345556667889999999999999999
Q ss_pred HHHHHHH
Q 032955 74 LYLARKL 80 (130)
Q Consensus 74 ~~l~~~i 80 (130)
..|.+.+
T Consensus 322 ~~I~~~l 328 (329)
T TIGR02729 322 YALAELL 328 (329)
T ss_pred HHHHHHh
Confidence 9998754
No 130
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.05 E-value=7.7e-10 Score=77.25 Aligned_cols=76 Identities=18% Similarity=0.169 Sum_probs=58.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
|+|.+++.++..+..|...+.... .++|+++|+||+|+.+... ...++...+.+++++||++|.|++++|.+|...
T Consensus 127 v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~---~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 127 VVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEE---LEERLEAGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred EEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHH---HHHHhhcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 578888888888888887766543 4789999999999864221 113334455789999999999999999998764
No 131
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.03 E-value=9.4e-10 Score=77.38 Aligned_cols=67 Identities=16% Similarity=0.318 Sum_probs=53.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--------------------CCCcEEEEecCCCCCC-cccCHH-----HHHHHHhc
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--------------------ENIPIVLCGNKVDVKN-RQVKAK-----QVTFHRKK 54 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--------------------~~~piilv~NK~Dl~~-~~v~~~-----~~~~~~~~ 54 (130)
|||+++++||+++..|+.++.... .++|++|||||+|+.+ +.++.. ...++.+.
T Consensus 84 VyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~ 163 (202)
T cd04102 84 VHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQG 163 (202)
T ss_pred EEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhc
Confidence 799999999999999999987631 3689999999999965 444432 22467889
Q ss_pred CCcEEEeccCCCC
Q 032955 55 NLQYYEISAKSNY 67 (130)
Q Consensus 55 ~~~~~e~Sak~~~ 67 (130)
+++.++.+++++.
T Consensus 164 ~~~~i~~~c~~~~ 176 (202)
T cd04102 164 NAEEINLNCTNGR 176 (202)
T ss_pred CCceEEEecCCcc
Confidence 9999998887553
No 132
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.02 E-value=1.9e-09 Score=72.98 Aligned_cols=75 Identities=13% Similarity=0.204 Sum_probs=55.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHHHHhcC--------CcEEEeccCCCCChH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--------LQYYEISAKSNYNFE 70 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~--------~~~~e~Sak~~~~v~ 70 (130)
|||+++..+|.....|+..+... ..++|+++++||+|+.+.. . ...+....+ ..++++||++|.|++
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~--~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~ 164 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA-P--AEEIAEALNLHDLRDRTWHIQACSAKTGEGLQ 164 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC-C--HHHHHHHcCCcccCCCeEEEEEeECCCCCCHH
Confidence 68899888998888777666543 2479999999999985422 1 122222333 247899999999999
Q ss_pred HHHHHHHH
Q 032955 71 KPFLYLAR 78 (130)
Q Consensus 71 ~lf~~l~~ 78 (130)
++|++|++
T Consensus 165 ~~~~~l~~ 172 (173)
T cd04155 165 EGMNWVCK 172 (173)
T ss_pred HHHHHHhc
Confidence 99999975
No 133
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.00 E-value=1.7e-09 Score=74.61 Aligned_cols=78 Identities=14% Similarity=0.223 Sum_probs=57.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHH-HHHHHH--h----------cCCcEEEeccCC
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK-QVTFHR--K----------KNLQYYEISAKS 65 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~-~~~~~~--~----------~~~~~~e~Sak~ 65 (130)
|||.+++++|.....|+..+.+. ..++|+++|+||+|+... ++.+ ...... + ....+|.|||++
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~-~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~ 169 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA-ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVR 169 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC-CCHHHHHHHcCCCcccccccccCCceeEEEEeeccc
Confidence 68999999999998888776543 258999999999998642 2222 222211 0 123589999999
Q ss_pred CCChHHHHHHHHHH
Q 032955 66 NYNFEKPFLYLARK 79 (130)
Q Consensus 66 ~~~v~~lf~~l~~~ 79 (130)
|.|+++++++|...
T Consensus 170 ~~g~~~~~~wl~~~ 183 (184)
T smart00178 170 RMGYGEGFKWLSQY 183 (184)
T ss_pred CCChHHHHHHHHhh
Confidence 99999999999754
No 134
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.96 E-value=1.8e-09 Score=73.04 Aligned_cols=76 Identities=12% Similarity=0.122 Sum_probs=55.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCC--cEEEeccCCCCChHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--QYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~--~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
|||.++..++ +..|+..+ ..+.|+++++||+|+.+.. ......++.+.++ ++|++||++|.||+++|..+.+
T Consensus 71 v~d~~~~~s~--~~~~~~~~---~~~~~ii~v~nK~Dl~~~~-~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~ 144 (158)
T PRK15467 71 VHGANDPESR--LPAGLLDI---GVSKRQIAVISKTDMPDAD-VAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLAS 144 (158)
T ss_pred EEeCCCcccc--cCHHHHhc---cCCCCeEEEEEccccCccc-HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHH
Confidence 5788877665 33455443 2467999999999986421 1224566666764 8999999999999999999988
Q ss_pred HHhc
Q 032955 79 KLAG 82 (130)
Q Consensus 79 ~i~~ 82 (130)
.+..
T Consensus 145 ~~~~ 148 (158)
T PRK15467 145 LTKQ 148 (158)
T ss_pred hchh
Confidence 7644
No 135
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.96 E-value=4.8e-09 Score=69.23 Aligned_cols=78 Identities=22% Similarity=0.323 Sum_probs=56.1
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHH-----HHhcCCcEEEeccCCCCChHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~-----~~~~~~~~~e~Sak~~~~v~~lf 73 (130)
|||+++..+|.....|+..+... ..++|+++|+||+|+.+.......... ......+++++||++|.|++++|
T Consensus 74 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (159)
T cd04159 74 VVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVL 153 (159)
T ss_pred EEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHH
Confidence 68899988998888877766542 257899999999998653211111111 11223578999999999999999
Q ss_pred HHHHH
Q 032955 74 LYLAR 78 (130)
Q Consensus 74 ~~l~~ 78 (130)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04159 154 DWLIK 158 (159)
T ss_pred HHHhh
Confidence 99875
No 136
>PRK04213 GTP-binding protein; Provisional
Probab=98.95 E-value=1.7e-09 Score=75.25 Aligned_cols=57 Identities=21% Similarity=0.194 Sum_probs=43.1
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHHHhcCC---------cEEEeccCCCCChHHHHHHHHHHHhcC
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---------QYYEISAKSNYNFEKPFLYLARKLAGD 83 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~---------~~~e~Sak~~~~v~~lf~~l~~~i~~~ 83 (130)
.++|+++|+||+|+.+.. .....+++..+++ +++++||++| ||+++|.+|++.+...
T Consensus 129 ~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 129 LGIPPIVAVNKMDKIKNR-DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred cCCCeEEEEECccccCcH-HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 489999999999986432 1123445555554 4799999999 9999999999887543
No 137
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.94 E-value=8.1e-09 Score=79.89 Aligned_cols=82 Identities=17% Similarity=0.265 Sum_probs=63.3
Q ss_pred CeecCcH---HHHHhHHHHHHHHHHhC---CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHH
Q 032955 1 MFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 74 (130)
Q Consensus 1 V~d~~~~---~s~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~ 74 (130)
|+|+++. ++++.+..|..++..+. .+.|+++|+||+|+.+. ......+++.++.++|.+||+++.|+++++.
T Consensus 243 VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~ 320 (424)
T PRK12297 243 VIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKEKLGPKVFPISALTGQGLDELLY 320 (424)
T ss_pred EEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHHHhCCcEEEEeCCCCCCHHHHHH
Confidence 5788754 67888888888887764 37899999999998532 1223455666667899999999999999999
Q ss_pred HHHHHHhcCC
Q 032955 75 YLARKLAGDP 84 (130)
Q Consensus 75 ~l~~~i~~~~ 84 (130)
.|.+.+....
T Consensus 321 ~L~~~l~~~~ 330 (424)
T PRK12297 321 AVAELLEETP 330 (424)
T ss_pred HHHHHHHhCc
Confidence 9998876543
No 138
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.91 E-value=7.3e-09 Score=68.84 Aligned_cols=75 Identities=16% Similarity=0.103 Sum_probs=53.6
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
|+|.+++++. ..|...+.. .++|+++|+||+|+.+ ..+......++..++.+++++||++|.|+.++|..|.+.
T Consensus 81 v~d~~~~~~~---~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 81 VVDATNLERN---LYLTLQLLE--LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred EeeCCcchhH---HHHHHHHHH--cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHH
Confidence 4666654432 234444433 4789999999999965 233333445666778899999999999999999998876
Q ss_pred H
Q 032955 80 L 80 (130)
Q Consensus 80 i 80 (130)
+
T Consensus 156 ~ 156 (158)
T cd01879 156 A 156 (158)
T ss_pred h
Confidence 3
No 139
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.86 E-value=2.2e-08 Score=67.15 Aligned_cols=82 Identities=21% Similarity=0.443 Sum_probs=69.0
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCC-cccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
||+..+++||..+.....+|.+.. ..+||++++||+|+.+ +.+... +..||++-.+..++++|.+...+-+.|..|
T Consensus 91 VYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l 170 (198)
T KOG3883|consen 91 VYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYL 170 (198)
T ss_pred EecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHHHHH
Confidence 689999999999887666666543 5899999999999976 555555 789999888999999999999999999999
Q ss_pred HHHHhc
Q 032955 77 ARKLAG 82 (130)
Q Consensus 77 ~~~i~~ 82 (130)
+..+..
T Consensus 171 ~~rl~~ 176 (198)
T KOG3883|consen 171 ASRLHQ 176 (198)
T ss_pred HHhccC
Confidence 887654
No 140
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.86 E-value=7.9e-09 Score=69.82 Aligned_cols=79 Identities=13% Similarity=0.174 Sum_probs=56.8
Q ss_pred CeecCcH------HHHHhHHHHHHHHHHhC--------CCCcEEEEecCCCCCCcc-cCHH-HHHHHHhcCCcEEEeccC
Q 032955 1 MFDVTAR------LTYKNVPTWHRDLCRVC--------ENIPIVLCGNKVDVKNRQ-VKAK-QVTFHRKKNLQYYEISAK 64 (130)
Q Consensus 1 V~d~~~~------~s~~~~~~~~~~~~~~~--------~~~piilv~NK~Dl~~~~-v~~~-~~~~~~~~~~~~~e~Sak 64 (130)
|+|.++. .++..+..|...+.... .+.|+++|+||+|+.... .... ........+..++++||+
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAK 160 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehh
Confidence 5777776 57888877877776442 378999999999986422 1111 123333445779999999
Q ss_pred CCCChHHHHHHHHHH
Q 032955 65 SNYNFEKPFLYLARK 79 (130)
Q Consensus 65 ~~~~v~~lf~~l~~~ 79 (130)
++.|++++++.+...
T Consensus 161 ~~~gl~~l~~~l~~~ 175 (176)
T cd01881 161 TEEGLDELIRAIYEL 175 (176)
T ss_pred hhcCHHHHHHHHHhh
Confidence 999999999988754
No 141
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.83 E-value=2.1e-08 Score=75.96 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=55.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
|||++++.+++.+..|...+.... .+.|+++|+||+|+... .....+. ....+++.+||++|.|+++++..|...
T Consensus 275 VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~---~~v~~~~-~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 275 VVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE---PRIERLE-EGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred EEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh---HhHHHHH-hCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 689999888888877776665543 47899999999998541 1111111 222468999999999999999988764
No 142
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.80 E-value=5.1e-08 Score=62.99 Aligned_cols=77 Identities=36% Similarity=0.601 Sum_probs=56.5
Q ss_pred CeecCcHHHHHhHHHHHHH--HHHhCCCCcEEEEecCCCCCCcccCHH---HHHHHHhcCCcEEEeccCCCCChHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRD--LCRVCENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLY 75 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~--~~~~~~~~piilv~NK~Dl~~~~v~~~---~~~~~~~~~~~~~e~Sak~~~~v~~lf~~ 75 (130)
|||++++.++.....|... ......++|+++|+||+|+........ ........+.+++++|++.+.|+.+++.+
T Consensus 75 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 154 (157)
T cd00882 75 VYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEE 154 (157)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHH
Confidence 6889999999988887322 222346899999999999865322221 22334445688999999999999999998
Q ss_pred HH
Q 032955 76 LA 77 (130)
Q Consensus 76 l~ 77 (130)
|.
T Consensus 155 l~ 156 (157)
T cd00882 155 LA 156 (157)
T ss_pred Hh
Confidence 75
No 143
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.79 E-value=1.4e-08 Score=74.89 Aligned_cols=76 Identities=12% Similarity=0.101 Sum_probs=57.8
Q ss_pred CeecCcHH-HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955 1 MFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 1 V~d~~~~~-s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
|+|++++. ++..+.+|+..+.. .++|+++|+||+||.+.........++...+++++.+||+++.|+++++..|..
T Consensus 85 V~d~~~p~~s~~~ldr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 85 VVSLNEPFFNPRLLDRYLVAAEA--AGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHH--cCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHHHHHhhhcc
Confidence 57888887 88889999877654 579999999999996431111122334557889999999999999999987764
No 144
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.78 E-value=4e-08 Score=67.41 Aligned_cols=80 Identities=16% Similarity=0.279 Sum_probs=58.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHHH--H----hcCCcEEEeccCCCCChHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH--R----KKNLQYYEISAKSNYNFEKP 72 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~--~----~~~~~~~e~Sak~~~~v~~l 72 (130)
|+|.++.+.+......+..+... ..++|+++++||.|+.+..-..+..... . ...+.++.|||++|.|+.+.
T Consensus 88 VvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~ 167 (175)
T PF00025_consen 88 VVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEG 167 (175)
T ss_dssp EEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHH
T ss_pred EEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHH
Confidence 57888888888887777666553 2589999999999987522112222221 1 23356899999999999999
Q ss_pred HHHHHHHH
Q 032955 73 FLYLARKL 80 (130)
Q Consensus 73 f~~l~~~i 80 (130)
|+||...|
T Consensus 168 l~WL~~~~ 175 (175)
T PF00025_consen 168 LEWLIEQI 175 (175)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999865
No 145
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.78 E-value=1.8e-08 Score=69.43 Aligned_cols=84 Identities=30% Similarity=0.435 Sum_probs=67.8
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-----CCCcEEEEecCCCCCCcccCH---HHHHHHHhcCC-cEEEeccCCCCChHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA---KQVTFHRKKNL-QYYEISAKSNYNFEK 71 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-----~~~piilv~NK~Dl~~~~v~~---~~~~~~~~~~~-~~~e~Sak~~~~v~~ 71 (130)
|||+|+.-+|+.+..|.+++-.-. ..+|+|+..||||........ ....+.+++|+ .++++|+|.+.|+++
T Consensus 105 Vfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~E 184 (229)
T KOG4423|consen 105 VFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPE 184 (229)
T ss_pred EEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhH
Confidence 799999999999999998876431 378999999999987644332 23367778885 599999999999999
Q ss_pred HHHHHHHHHhcCC
Q 032955 72 PFLYLARKLAGDP 84 (130)
Q Consensus 72 lf~~l~~~i~~~~ 84 (130)
+-..|++.+..+.
T Consensus 185 a~r~lVe~~lvnd 197 (229)
T KOG4423|consen 185 AQRELVEKILVND 197 (229)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999876654
No 146
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.77 E-value=1.4e-07 Score=72.38 Aligned_cols=83 Identities=17% Similarity=0.171 Sum_probs=60.5
Q ss_pred CeecC---cHHHHHhHHHHHHHHHHhC---CCCcEEEEecCCCCCCcc-cCHHHHHHHHhcC--CcEEEeccCCCCChHH
Q 032955 1 MFDVT---ARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKN--LQYYEISAKSNYNFEK 71 (130)
Q Consensus 1 V~d~~---~~~s~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~-v~~~~~~~~~~~~--~~~~e~Sak~~~~v~~ 71 (130)
|+|++ +.+.++.+..|..++..+. .+.|+++|+||+|+.+.. +......+...++ ..++.+||+++.||++
T Consensus 244 VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIde 323 (390)
T PRK12298 244 LIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKE 323 (390)
T ss_pred EeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHH
Confidence 45666 4567788888888887754 368999999999986522 2122234444444 3689999999999999
Q ss_pred HHHHHHHHHhcC
Q 032955 72 PFLYLARKLAGD 83 (130)
Q Consensus 72 lf~~l~~~i~~~ 83 (130)
++..|...+...
T Consensus 324 Ll~~I~~~L~~~ 335 (390)
T PRK12298 324 LCWDLMTFIEEN 335 (390)
T ss_pred HHHHHHHHhhhC
Confidence 999999888654
No 147
>PRK11058 GTPase HflX; Provisional
Probab=98.76 E-value=6.2e-08 Score=75.14 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=56.9
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCc-EEEeccCCCCChHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~-~~e~Sak~~~~v~~lf~~l~~ 78 (130)
|+|++++.+++.+..|...+.... .++|+++|+||+|+...... ... ....+.+ ++.+||++|.|+++++..|..
T Consensus 283 VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~--~~~-~~~~~~~~~v~ISAktG~GIdeL~e~I~~ 359 (426)
T PRK11058 283 VVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP--RID-RDEENKPIRVWLSAQTGAGIPLLFQALTE 359 (426)
T ss_pred EEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH--HHH-HHhcCCCceEEEeCCCCCCHHHHHHHHHH
Confidence 689999888888766655544432 47999999999998642111 111 1123455 589999999999999999998
Q ss_pred HHhc
Q 032955 79 KLAG 82 (130)
Q Consensus 79 ~i~~ 82 (130)
.+..
T Consensus 360 ~l~~ 363 (426)
T PRK11058 360 RLSG 363 (426)
T ss_pred Hhhh
Confidence 8754
No 148
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.74 E-value=4.1e-08 Score=77.22 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=57.6
Q ss_pred CeecCc----HHHHHhHHHHHHHHHHhC------------CCCcEEEEecCCCCCCc-ccCHHHHHHHHhcCCcEEEecc
Q 032955 1 MFDVTA----RLTYKNVPTWHRDLCRVC------------ENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISA 63 (130)
Q Consensus 1 V~d~~~----~~s~~~~~~~~~~~~~~~------------~~~piilv~NK~Dl~~~-~v~~~~~~~~~~~~~~~~e~Sa 63 (130)
|+|+++ ++.+..+..|..++..+. .+.|+|+|+||+|+.+. .............++++|.+||
T Consensus 243 VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA 322 (500)
T PRK12296 243 VVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPVFEVSA 322 (500)
T ss_pred EECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeEEEEEC
Confidence 567764 235556666666665442 36899999999999642 2111222233445788999999
Q ss_pred CCCCChHHHHHHHHHHHhcC
Q 032955 64 KSNYNFEKPFLYLARKLAGD 83 (130)
Q Consensus 64 k~~~~v~~lf~~l~~~i~~~ 83 (130)
+++.|+++++.+|.+.+...
T Consensus 323 ~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 323 ASREGLRELSFALAELVEEA 342 (500)
T ss_pred CCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999887553
No 149
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.74 E-value=6.4e-08 Score=70.73 Aligned_cols=79 Identities=18% Similarity=0.085 Sum_probs=53.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCccc-CHHHHHHHHhcCC-cEEEeccCCCCChHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v-~~~~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
|+|.++..++. ..|...+.. .+.|+++|+||+|+.+... ......++...+. ++|.+||++|.|+++++..|..
T Consensus 86 VvD~~~~~~~~--~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~ 161 (270)
T TIGR00436 86 VVDSDQWNGDG--EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEV 161 (270)
T ss_pred EEECCCCCchH--HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHH
Confidence 46777665553 334444433 4789999999999864221 1122344444444 7899999999999999999988
Q ss_pred HHhcC
Q 032955 79 KLAGD 83 (130)
Q Consensus 79 ~i~~~ 83 (130)
.+...
T Consensus 162 ~l~~~ 166 (270)
T TIGR00436 162 HLPEG 166 (270)
T ss_pred hCCCC
Confidence 87543
No 150
>PRK12289 GTPase RsgA; Reviewed
Probab=98.73 E-value=3.3e-08 Score=74.89 Aligned_cols=77 Identities=18% Similarity=0.158 Sum_probs=55.9
Q ss_pred CeecCcHH-HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955 1 MFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 1 V~d~~~~~-s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
|||++++. ++..+.+|+..+.. .++|+++|+||+||............+..+|+.+|.+||++|.|+++++..|...
T Consensus 96 V~d~~~p~~~~~~LdR~L~~a~~--~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 96 VFALAEPPLDPWQLSRFLVKAES--TGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHhhhhccc
Confidence 67887765 55567888865533 5899999999999964211111123345678899999999999999999888653
No 151
>PRK12288 GTPase RsgA; Reviewed
Probab=98.73 E-value=5.3e-08 Score=73.67 Aligned_cols=77 Identities=14% Similarity=0.134 Sum_probs=57.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCccc---CHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v---~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
||+++...+|..+.+|+..+.. .++|+++|+||+||..... .......+...++++|.+||+++.|+++++..|.
T Consensus 127 V~s~~p~~s~~~Ldr~L~~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~GideL~~~L~ 204 (347)
T PRK12288 127 VSAVLPELSLNIIDRYLVACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGLEELEAALT 204 (347)
T ss_pred EEeCCCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCHHHHHHHHh
Confidence 5677766799999999875543 5799999999999964221 1112233456788999999999999999999887
Q ss_pred HH
Q 032955 78 RK 79 (130)
Q Consensus 78 ~~ 79 (130)
..
T Consensus 205 ~k 206 (347)
T PRK12288 205 GR 206 (347)
T ss_pred hC
Confidence 53
No 152
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.72 E-value=3e-08 Score=77.73 Aligned_cols=78 Identities=17% Similarity=0.141 Sum_probs=53.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc----cCHHHH-HHHHhcCCcEEEeccCCCCChHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ----VKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY 75 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~----v~~~~~-~~~~~~~~~~~e~Sak~~~~v~~lf~~ 75 (130)
|||+++..++..+. |+..+.. .+.|+|+|+||+|+.+.. +..+.. .+......+++++||++|.||+++|..
T Consensus 300 V~Da~~~~s~~~~~-~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~ 376 (472)
T PRK03003 300 LIDASEPISEQDQR-VLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPA 376 (472)
T ss_pred EEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHH
Confidence 67888877777664 4444433 589999999999996421 111111 122222367999999999999999999
Q ss_pred HHHHHh
Q 032955 76 LARKLA 81 (130)
Q Consensus 76 l~~~i~ 81 (130)
+++.+.
T Consensus 377 i~~~~~ 382 (472)
T PRK03003 377 LETALE 382 (472)
T ss_pred HHHHHH
Confidence 988764
No 153
>PRK00098 GTPase RsgA; Reviewed
Probab=98.72 E-value=2.2e-08 Score=74.31 Aligned_cols=76 Identities=16% Similarity=0.122 Sum_probs=55.3
Q ss_pred CeecCcHHHHH-hHHHHHHHHHHhCCCCcEEEEecCCCCCCc-ccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955 1 MFDVTARLTYK-NVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 1 V~d~~~~~s~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
|+|++++.++. .+.+|+..+.. .++|+++|+||+||.+. ........++...+++++.+||+++.|+++++..+..
T Consensus 87 V~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 87 VFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGLDELKPLLAG 164 (298)
T ss_pred EEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHhhccC
Confidence 57888776544 45788876654 58999999999999632 1111223445567889999999999999999987754
No 154
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.71 E-value=8.3e-08 Score=62.78 Aligned_cols=75 Identities=24% Similarity=0.481 Sum_probs=51.6
Q ss_pred eecCcH-HHHHhHH-HHHHHHHHhCC-CCcEEEEecCCCCCCcccCHHH-HHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955 2 FDVTAR-LTYKNVP-TWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 2 ~d~~~~-~s~~~~~-~~~~~~~~~~~-~~piilv~NK~Dl~~~~v~~~~-~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
+|+... .++.... .|...+..... +.|+++|+||+|+......... ..+......+++++||++|.|+.++|..|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 455444 4555554 57666666544 8999999999999654333332 22333335679999999999999999876
No 155
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.71 E-value=9.3e-08 Score=63.77 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=37.7
Q ss_pred CcEEEEecCCCCCCcc-c---CHHHHHHHHh---cCCcEEEeccCCCCChHHHHHHHHH
Q 032955 27 IPIVLCGNKVDVKNRQ-V---KAKQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 27 ~piilv~NK~Dl~~~~-v---~~~~~~~~~~---~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
.|+++|+||+|+.+.. . ..+..+++.. .+.+++++||++|.|++++|..+.+
T Consensus 105 ~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 105 KRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred CcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 4999999999996521 1 1122233333 3578999999999999999998764
No 156
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.69 E-value=4.4e-08 Score=78.74 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=46.6
Q ss_pred CCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955 25 ENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
.++|+++|+||+|+.+ +.+......+.+.++++++++||++|.|++++|+.+.+..
T Consensus 98 ~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 98 LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4899999999999864 3343345667778899999999999999999999998764
No 157
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.68 E-value=6e-08 Score=75.56 Aligned_cols=74 Identities=26% Similarity=0.294 Sum_probs=57.1
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
|||.+++.+++.. |+..+.. .++|+++|+||+|+... ....++..++.+++++||++ .||+++|..|.+.+
T Consensus 289 V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~~~----~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 289 VLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLKIN----SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred EEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCCCc----chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHH
Confidence 6889888777765 7665543 47899999999998543 22345566778899999998 69999999999987
Q ss_pred hcC
Q 032955 81 AGD 83 (130)
Q Consensus 81 ~~~ 83 (130)
...
T Consensus 360 ~~~ 362 (442)
T TIGR00450 360 NAF 362 (442)
T ss_pred HHH
Confidence 654
No 158
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.66 E-value=8.2e-08 Score=77.27 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=55.9
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCC---cEEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~---~~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||+++..++.....|...+. .++|+++|+||+|+.+........++...+++ .++++||++|.||+++|+.|+
T Consensus 100 VvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~ 176 (595)
T TIGR01393 100 LVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIV 176 (595)
T ss_pred EecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHH
Confidence 578887656666666654332 37899999999998642211112345555555 389999999999999999999
Q ss_pred HHHhc
Q 032955 78 RKLAG 82 (130)
Q Consensus 78 ~~i~~ 82 (130)
+.+..
T Consensus 177 ~~lp~ 181 (595)
T TIGR01393 177 KRVPP 181 (595)
T ss_pred HhCCC
Confidence 87743
No 159
>PLN00023 GTP-binding protein; Provisional
Probab=98.65 E-value=7.6e-08 Score=72.06 Aligned_cols=56 Identities=20% Similarity=0.411 Sum_probs=44.8
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-------------CCCcEEEEecCCCCCCc----cc---CHH-HHHHHHhcCC
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-------------ENIPIVLCGNKVDVKNR----QV---KAK-QVTFHRKKNL 56 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-------------~~~piilv~NK~Dl~~~----~v---~~~-~~~~~~~~~~ 56 (130)
|||++++.||+++..|++.+.... .++|++|||||+||..+ .+ ..+ +..||.+.++
T Consensus 113 VyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 113 VHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHHHHHHHHHcCC
Confidence 799999999999999999998752 15899999999999652 22 233 7788888773
No 160
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.65 E-value=1e-07 Score=66.01 Aligned_cols=77 Identities=19% Similarity=0.192 Sum_probs=50.1
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-HHHHH-----HhcCC---cEEEeccCCCCChHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFH-----RKKNL---QYYEISAKSNYNFEK 71 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~~~~~-----~~~~~---~~~e~Sak~~~~v~~ 71 (130)
|+|++++. ..|...+.....+.|+++|+||+|+........ ...+. ...+. .+|.+||++|.|+++
T Consensus 41 VvD~~~~~-----~~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~e 115 (190)
T cd01855 41 VVDIFDFP-----GSLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEE 115 (190)
T ss_pred EEECccCC-----CccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHH
Confidence 46776542 123333322235789999999999865333222 22333 22333 589999999999999
Q ss_pred HHHHHHHHHhc
Q 032955 72 PFLYLARKLAG 82 (130)
Q Consensus 72 lf~~l~~~i~~ 82 (130)
++..|.+.+..
T Consensus 116 L~~~l~~~l~~ 126 (190)
T cd01855 116 LINAIKKLAKK 126 (190)
T ss_pred HHHHHHHHhhc
Confidence 99999987753
No 161
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.63 E-value=9.1e-08 Score=63.19 Aligned_cols=70 Identities=17% Similarity=0.122 Sum_probs=50.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
|+|++++.+......|.. ..+.|+++|+||+|+.+.... .....+.+++++||+++.|+++++.+|...+
T Consensus 87 v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 87 VIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred EEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 467776666555544432 357999999999998652211 2334467899999999999999999988754
No 162
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.63 E-value=2.1e-07 Score=62.59 Aligned_cols=83 Identities=23% Similarity=0.316 Sum_probs=66.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-------cccCHHHHHHHHhcCCcEEEeccCCCCChHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-------RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-------~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf 73 (130)
+||++.+.++.++..|+...+......--|+||+|.|+-- ..+...++.+|+-++.+.|.+|+....||..+|
T Consensus 99 mFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIF 178 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIF 178 (205)
T ss_pred EEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHH
Confidence 5999999999999999998877654444467899999521 122344667888899999999999999999999
Q ss_pred HHHHHHHhcC
Q 032955 74 LYLARKLAGD 83 (130)
Q Consensus 74 ~~l~~~i~~~ 83 (130)
.-+...+...
T Consensus 179 K~vlAklFnL 188 (205)
T KOG1673|consen 179 KIVLAKLFNL 188 (205)
T ss_pred HHHHHHHhCC
Confidence 9888887654
No 163
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.62 E-value=1.3e-07 Score=62.57 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=39.5
Q ss_pred CCcEEEEecCCCCCCcccCHHHHHHHHhcCC-cEEEeccCCCCChHHHHHHHHHH
Q 032955 26 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
+.|+++|+||+|+.+.... ...+...+. +++++||++|.|++++|..|++.
T Consensus 105 ~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 105 KKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred CCCEEEEEECcccCChHHH---HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 6999999999998652211 222334555 78999999999999999999875
No 164
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.60 E-value=8.1e-08 Score=74.98 Aligned_cols=71 Identities=17% Similarity=0.181 Sum_probs=54.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
|||.+++.+++....|.. ..+.|+++|+||+|+.+... .. ...+.+++++||++|.|+++++..|.+.+
T Consensus 301 VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~~~~~---~~---~~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 301 VLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLTGEID---LE---EENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred EecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhccccch---hh---hccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 688888877776655553 35789999999999864211 11 23456799999999999999999999987
Q ss_pred hc
Q 032955 81 AG 82 (130)
Q Consensus 81 ~~ 82 (130)
..
T Consensus 370 ~~ 371 (449)
T PRK05291 370 FG 371 (449)
T ss_pred hh
Confidence 54
No 165
>PRK15494 era GTPase Era; Provisional
Probab=98.59 E-value=1.3e-07 Score=71.33 Aligned_cols=75 Identities=20% Similarity=0.257 Sum_probs=51.6
Q ss_pred HHHHHhHHH-HHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcC--CcEEEeccCCCCChHHHHHHHHHHHhcC
Q 032955 7 RLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGD 83 (130)
Q Consensus 7 ~~s~~~~~~-~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~--~~~~e~Sak~~~~v~~lf~~l~~~i~~~ 83 (130)
..+|..... |+..+.. .+.|.++|+||+|+.+.. ......++...+ ..+|.+||++|.|++++|.+|...+...
T Consensus 142 ~~s~~~~~~~il~~l~~--~~~p~IlViNKiDl~~~~-~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 142 LKSFDDITHNILDKLRS--LNIVPIFLLNKIDIESKY-LNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKIS 218 (339)
T ss_pred CCCCCHHHHHHHHHHHh--cCCCEEEEEEhhcCcccc-HHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCC
Confidence 345666644 5554443 356778999999986432 122344444443 5699999999999999999999887654
Q ss_pred C
Q 032955 84 P 84 (130)
Q Consensus 84 ~ 84 (130)
+
T Consensus 219 ~ 219 (339)
T PRK15494 219 P 219 (339)
T ss_pred C
Confidence 3
No 166
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.56 E-value=3.8e-07 Score=61.03 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=48.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc-cCH-H-HHHHHHhc----CCcEEEeccCCCCChHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA-K-QVTFHRKK----NLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-v~~-~-~~~~~~~~----~~~~~e~Sak~~~~v~~lf 73 (130)
|+|++++.++.... +...+.. .+.|+++|+||+|+.+.. ... . .....+.+ ..+++.+||+++.|+++++
T Consensus 91 v~d~~~~~~~~~~~-~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 167 (174)
T cd01895 91 VIDATEGITEQDLR-IAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLF 167 (174)
T ss_pred EEeCCCCcchhHHH-HHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHH
Confidence 46666665544332 2222222 478999999999986531 111 1 12222333 3679999999999999999
Q ss_pred HHHHHH
Q 032955 74 LYLARK 79 (130)
Q Consensus 74 ~~l~~~ 79 (130)
..+.+.
T Consensus 168 ~~l~~~ 173 (174)
T cd01895 168 DAIDEV 173 (174)
T ss_pred HHHHHh
Confidence 988764
No 167
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.55 E-value=5.4e-08 Score=76.76 Aligned_cols=86 Identities=17% Similarity=0.293 Sum_probs=64.3
Q ss_pred CeecCcHHHHHhHH-HHHHHHHHhC---CCCcEEEEecCCCCCCccc---CHHHHHHHHhcC-C-cEEEeccCCCCChHH
Q 032955 1 MFDVTARLTYKNVP-TWHRDLCRVC---ENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKN-L-QYYEISAKSNYNFEK 71 (130)
Q Consensus 1 V~d~~~~~s~~~~~-~~~~~~~~~~---~~~piilv~NK~Dl~~~~v---~~~~~~~~~~~~-~-~~~e~Sak~~~~v~~ 71 (130)
||++++++|++.+. .|+..+++.. -++||||||||+|+..... +.....++.++. + ..|+|||++..++.+
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e 165 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSE 165 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHh
Confidence 68999999999996 5999999876 5899999999999865221 112223333332 2 369999999999999
Q ss_pred HHHHHHHHHhcCCCC
Q 032955 72 PFLYLARKLAGDPNL 86 (130)
Q Consensus 72 lf~~l~~~i~~~~~~ 86 (130)
+|...-+.+..-..+
T Consensus 166 ~fYyaqKaVihPt~P 180 (625)
T KOG1707|consen 166 LFYYAQKAVIHPTSP 180 (625)
T ss_pred hhhhhhheeeccCcc
Confidence 999877777654443
No 168
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.54 E-value=2.1e-07 Score=70.74 Aligned_cols=66 Identities=20% Similarity=0.271 Sum_probs=48.8
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-HH----HHHHhcCC---cEEEeccCCCCChHHHHHHHHHH
Q 032955 14 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QV----TFHRKKNL---QYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 14 ~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~~----~~~~~~~~---~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
..|..++.+...+.|+++|+||+|+..+.+..+ .. .++.+.++ .++.+||++|.|++++|..|.+.
T Consensus 78 ~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 78 GSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred CCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 346666666656789999999999975444322 22 34566665 48999999999999999988764
No 169
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.52 E-value=3.5e-07 Score=71.80 Aligned_cols=76 Identities=22% Similarity=0.221 Sum_probs=50.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCC-cEEEeccCCCCChHHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
|||+++..++.. ..|...+.. .+.|+++|+||+|+.... .+...+. ..++ ..+++||++|.|++++|..|+..
T Consensus 124 VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~~~~--~~~~~~~-~~g~~~~~~iSA~~g~gi~eL~~~i~~~ 197 (472)
T PRK03003 124 VVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDERGE--ADAAALW-SLGLGEPHPVSALHGRGVGDLLDAVLAA 197 (472)
T ss_pred EEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCCccc--hhhHHHH-hcCCCCeEEEEcCCCCCcHHHHHHHHhh
Confidence 678887644332 234433333 479999999999985421 1212221 2333 35799999999999999999988
Q ss_pred Hhc
Q 032955 80 LAG 82 (130)
Q Consensus 80 i~~ 82 (130)
+..
T Consensus 198 l~~ 200 (472)
T PRK03003 198 LPE 200 (472)
T ss_pred ccc
Confidence 765
No 170
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.51 E-value=5.1e-07 Score=69.77 Aligned_cols=78 Identities=17% Similarity=0.131 Sum_probs=50.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCH-HH-HHHHHh----cCCcEEEeccCCCCChHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQ-VTFHRK----KNLQYYEISAKSNYNFEKPFL 74 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~-~~-~~~~~~----~~~~~~e~Sak~~~~v~~lf~ 74 (130)
|+|+++..+..... +...+.. .+.|+++|+||+|+.+..... .. ...... ...+++++||++|.|++++|.
T Consensus 261 V~D~~~~~~~~~~~-~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~ 337 (429)
T TIGR03594 261 VLDATEGITEQDLR-IAGLILE--AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLD 337 (429)
T ss_pred EEECCCCccHHHHH-HHHHHHH--cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHH
Confidence 56777665554433 2333322 479999999999986211111 11 122222 236899999999999999999
Q ss_pred HHHHHHh
Q 032955 75 YLARKLA 81 (130)
Q Consensus 75 ~l~~~i~ 81 (130)
.+.+...
T Consensus 338 ~i~~~~~ 344 (429)
T TIGR03594 338 AIDEVYE 344 (429)
T ss_pred HHHHHHH
Confidence 9988654
No 171
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.49 E-value=1.1e-06 Score=58.94 Aligned_cols=57 Identities=18% Similarity=0.192 Sum_probs=39.7
Q ss_pred CCCcEEEEecCCCCCCcccCH---HHHHHHH----hc--CCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955 25 ENIPIVLCGNKVDVKNRQVKA---KQVTFHR----KK--NLQYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~---~~~~~~~----~~--~~~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
.++|+++|+||+|+.+..... ....+.. .+ +.+++++||++|.|++++|.+|.+...
T Consensus 101 ~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 101 ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 478999999999986422111 1111111 11 357999999999999999999987653
No 172
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.48 E-value=7.2e-07 Score=62.53 Aligned_cols=56 Identities=23% Similarity=0.392 Sum_probs=39.6
Q ss_pred CcEEEEecCCCCCCcc-cC---HHHHHHHHh---cCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955 27 IPIVLCGNKVDVKNRQ-VK---AKQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 27 ~piilv~NK~Dl~~~~-v~---~~~~~~~~~---~~~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
.|+++|+||+|+.+.. .. .....++.. .+.++|.+||++|.|++++|..|.+.+..
T Consensus 138 ~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 138 KHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred CcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 5799999999986421 11 112233332 25679999999999999999999876643
No 173
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.48 E-value=4.9e-07 Score=60.65 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=42.0
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
.+.|+++|+||+|+...........+....+.+++.+||++|.|+++++..+.+.+..
T Consensus 40 ~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 40 LGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred CCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccHHHHHHHHHHHHhh
Confidence 3789999999999853211111112333456788999999999999999999887753
No 174
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.47 E-value=1.5e-06 Score=60.98 Aligned_cols=84 Identities=27% Similarity=0.362 Sum_probs=61.3
Q ss_pred CeecCc-HHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCCccc-------------CHH-HHHHHH---hcCCcEEEe
Q 032955 1 MFDVTA-RLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV-------------KAK-QVTFHR---KKNLQYYEI 61 (130)
Q Consensus 1 V~d~~~-~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~~~v-------------~~~-~~~~~~---~~~~~~~e~ 61 (130)
|||.++ ..+++....|...+.... ...|+++|+||+|+..... ... ....+. .....++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 578888 456777788999988877 4799999999999976321 111 111111 123348999
Q ss_pred ccC--CCCChHHHHHHHHHHHhcCC
Q 032955 62 SAK--SNYNFEKPFLYLARKLAGDP 84 (130)
Q Consensus 62 Sak--~~~~v~~lf~~l~~~i~~~~ 84 (130)
|++ ++.+|.++|..+++.+....
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHhh
Confidence 999 99999999999999886543
No 175
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.45 E-value=8.9e-07 Score=61.31 Aligned_cols=56 Identities=18% Similarity=0.106 Sum_probs=39.9
Q ss_pred CCcEEEEecCCCCCCcc-cC---HHHHH-HHH------hcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955 26 NIPIVLCGNKVDVKNRQ-VK---AKQVT-FHR------KKNLQYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~~-v~---~~~~~-~~~------~~~~~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
+.|+++|+||+|+.... .. .+..+ +.. ..+++++.+||++|.|+++++..|...+.
T Consensus 120 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 120 CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 67999999999986311 11 11111 111 13578999999999999999999988764
No 176
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.44 E-value=2.8e-07 Score=62.41 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=40.3
Q ss_pred CCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955 25 ENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
-++|+++|.||+|+.. +........+.+.+|++++.+||+++.|+++++..+
T Consensus 104 ~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 104 LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 3899999999999754 222223456677789999999999999999998764
No 177
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.43 E-value=8.6e-07 Score=71.50 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=53.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCc---EEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---YYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~---~~e~Sak~~~~v~~lf~~l~ 77 (130)
|+|.++.........|..... .++|+++|+||+|+.+........++...+++. ++.+||++|.||+++++.|.
T Consensus 104 VVDas~gv~~qt~~~~~~~~~---~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~ 180 (600)
T PRK05433 104 VVDASQGVEAQTLANVYLALE---NDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIV 180 (600)
T ss_pred EEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHH
Confidence 577776544444445543322 478999999999986422211123344445543 89999999999999999999
Q ss_pred HHHhc
Q 032955 78 RKLAG 82 (130)
Q Consensus 78 ~~i~~ 82 (130)
..+..
T Consensus 181 ~~lp~ 185 (600)
T PRK05433 181 ERIPP 185 (600)
T ss_pred HhCcc
Confidence 87753
No 178
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.36 E-value=2.6e-06 Score=57.98 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=41.0
Q ss_pred CCCcEEEEecCCCCCC-cccC---HHHHHHHHh--------------cCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955 25 ENIPIVLCGNKVDVKN-RQVK---AKQVTFHRK--------------KNLQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~-~~v~---~~~~~~~~~--------------~~~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
.+.|+++|+||+|+.. .... .......+. ...+++++||++|.|++++|..|.+.+
T Consensus 113 ~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 113 GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 5899999999999864 2111 112222222 346799999999999999999998876
No 179
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.34 E-value=1.6e-06 Score=56.56 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=39.9
Q ss_pred CCCcEEEEecCCCCCCcccCHHH-----HHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAKQ-----VTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~-----~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
.+.|+++|+||+|+......... .......+.+++++||+++.|+.+++..+.+.
T Consensus 103 ~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 103 RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 58999999999998652211111 12223345789999999999999999998765
No 180
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.33 E-value=4.2e-06 Score=56.72 Aligned_cols=82 Identities=13% Similarity=0.215 Sum_probs=61.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC----cccCHH--HHHHHHhcCCcEEEeccCCCCChHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN----RQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKP 72 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~----~~v~~~--~~~~~~~~~~~~~e~Sak~~~~v~~l 72 (130)
|||.+++..|+....-+..+... -.+.|+++++||.|+.. ..+... ...++....++.+.|||-+|.++.+.
T Consensus 90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~g 169 (185)
T KOG0073|consen 90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEG 169 (185)
T ss_pred EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHH
Confidence 68888888888877655554432 24789999999999974 122211 23455667789999999999999999
Q ss_pred HHHHHHHHhc
Q 032955 73 FLYLARKLAG 82 (130)
Q Consensus 73 f~~l~~~i~~ 82 (130)
|.+|+..+..
T Consensus 170 idWL~~~l~~ 179 (185)
T KOG0073|consen 170 IDWLCDDLMS 179 (185)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 181
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.32 E-value=2.4e-06 Score=59.22 Aligned_cols=69 Identities=10% Similarity=0.086 Sum_probs=41.9
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccC---HHHHHHHH-------hcCCcEEEeccCCCCChH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTFHR-------KKNLQYYEISAKSNYNFE 70 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~---~~~~~~~~-------~~~~~~~e~Sak~~~~v~ 70 (130)
|||+++. .+.....|+..+.. .++|+++|+||+|+.+.... .+...++. ..+++++.+||++|.|+.
T Consensus 95 V~d~~~~-~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~ 171 (194)
T cd01891 95 LVDASEG-PMPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASL 171 (194)
T ss_pred EEECCCC-ccHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccc
Confidence 5777753 23333344444333 47899999999999642211 12233332 236789999999998874
Q ss_pred HH
Q 032955 71 KP 72 (130)
Q Consensus 71 ~l 72 (130)
++
T Consensus 172 ~~ 173 (194)
T cd01891 172 NL 173 (194)
T ss_pred cc
Confidence 33
No 182
>PRK13796 GTPase YqeH; Provisional
Probab=98.29 E-value=2.7e-06 Score=64.86 Aligned_cols=66 Identities=24% Similarity=0.345 Sum_probs=48.0
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-H----HHHHHhcCC---cEEEeccCCCCChHHHHHHHHHH
Q 032955 14 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-Q----VTFHRKKNL---QYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 14 ~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~----~~~~~~~~~---~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
..|...+.+...+.|+++|+||+||..+.+..+ . ..+++..++ .++.+||++|.|+++++..|.+.
T Consensus 84 ~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 84 GSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 346666666556889999999999965433222 2 233555565 58999999999999999998765
No 183
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.28 E-value=3.6e-06 Score=58.00 Aligned_cols=57 Identities=18% Similarity=0.126 Sum_probs=41.1
Q ss_pred CCCcEEEEecCCCCCCc-ccC---HHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955 25 ENIPIVLCGNKVDVKNR-QVK---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~-~v~---~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
.+.|+++++||+|+.+. ... .....+.......++.+||++|.|++++|..|...+.
T Consensus 134 ~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 134 YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 37899999999998642 111 1122333333578999999999999999998887654
No 184
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.26 E-value=4.4e-06 Score=67.28 Aligned_cols=77 Identities=17% Similarity=0.103 Sum_probs=52.0
Q ss_pred CeecCc---HHHHHhHHHHHHHHHHhCCCCc-EEEEecCCCCCCcc-c---CHHHHHHHHhc----CCcEEEeccCCCCC
Q 032955 1 MFDVTA---RLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ-V---KAKQVTFHRKK----NLQYYEISAKSNYN 68 (130)
Q Consensus 1 V~d~~~---~~s~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-v---~~~~~~~~~~~----~~~~~e~Sak~~~~ 68 (130)
|+|+++ +.+++++. +. .. .++| +++|+||+|+.+.. + ..+...++... +.+++.+||++|.|
T Consensus 80 VVDa~~G~~~qT~ehl~-il---~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~G 153 (581)
T TIGR00475 80 VVDADEGVMTQTGEHLA-VL---DL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQG 153 (581)
T ss_pred EEECCCCCcHHHHHHHH-HH---HH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCC
Confidence 567776 55665543 22 21 3677 99999999996522 1 11233444443 46899999999999
Q ss_pred hHHHHHHHHHHHhcC
Q 032955 69 FEKPFLYLARKLAGD 83 (130)
Q Consensus 69 v~~lf~~l~~~i~~~ 83 (130)
+++++..|...+...
T Consensus 154 I~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 154 IGELKKELKNLLESL 168 (581)
T ss_pred chhHHHHHHHHHHhC
Confidence 999999888776543
No 185
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.25 E-value=4.1e-06 Score=68.86 Aligned_cols=79 Identities=14% Similarity=0.174 Sum_probs=52.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHH-HHHHhc----CCcEEEeccCCCCChHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKK----NLQYYEISAKSNYNFEKPFLY 75 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~-~~~~~~----~~~~~e~Sak~~~~v~~lf~~ 75 (130)
|+|.++..++..+..| ..+.. .++|+++|+||+|+.+........ .+...+ ..+.+.+||++|.||+++|..
T Consensus 539 ViDat~~~s~~~~~i~-~~~~~--~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~ 615 (712)
T PRK09518 539 LFDASQPISEQDLKVM-SMAVD--AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPA 615 (712)
T ss_pred EEECCCCCCHHHHHHH-HHHHH--cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHH
Confidence 5788777666665433 33333 479999999999996421111111 122221 245789999999999999999
Q ss_pred HHHHHhc
Q 032955 76 LARKLAG 82 (130)
Q Consensus 76 l~~~i~~ 82 (130)
+.+.+..
T Consensus 616 i~~~~~~ 622 (712)
T PRK09518 616 MQEALES 622 (712)
T ss_pred HHHHHHH
Confidence 9887754
No 186
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.24 E-value=4.9e-06 Score=55.00 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=39.5
Q ss_pred CCcEEEEecCCCCCC-cccCHH-HHHHHHhcC-CcEEEeccCCCCChHHHHHHHHHH
Q 032955 26 NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 26 ~~piilv~NK~Dl~~-~~v~~~-~~~~~~~~~-~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
+.|+++|+||+|+.. ...... ...+....+ .+++++|++++.|++++|..|.+.
T Consensus 111 ~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 111 KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 689999999999863 211122 233334443 679999999999999999998764
No 187
>PRK00089 era GTPase Era; Reviewed
Probab=98.24 E-value=5.9e-06 Score=60.89 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=43.3
Q ss_pred CCCcEEEEecCCCCCC-ccc-CHHHHHHHHhcC-CcEEEeccCCCCChHHHHHHHHHHHhcC
Q 032955 25 ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGD 83 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~-~~v-~~~~~~~~~~~~-~~~~e~Sak~~~~v~~lf~~l~~~i~~~ 83 (130)
.+.|+++|+||+|+.. ... ......+....+ ..+|.+||++|.|+++++..|...+...
T Consensus 112 ~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~ 173 (292)
T PRK00089 112 VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEG 173 (292)
T ss_pred cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCC
Confidence 3689999999999963 121 112334444344 5699999999999999999999987643
No 188
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.22 E-value=4.1e-06 Score=56.23 Aligned_cols=78 Identities=14% Similarity=0.120 Sum_probs=47.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc-cCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
|+|++++.+.. ..|+........+.|+++|.||+|+.... +......+....+..++.+||++|.|+++++..+...
T Consensus 6 VvD~~~p~~~~--~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i~~~ 83 (155)
T cd01849 6 VLDARDPLGTR--SPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAFTKQ 83 (155)
T ss_pred EEeccCCcccc--CHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHHHHH
Confidence 46776664433 22333111112579999999999985421 1111112322334568999999999999999988764
Q ss_pred H
Q 032955 80 L 80 (130)
Q Consensus 80 i 80 (130)
.
T Consensus 84 ~ 84 (155)
T cd01849 84 T 84 (155)
T ss_pred h
Confidence 3
No 189
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=2.8e-06 Score=58.05 Aligned_cols=83 Identities=19% Similarity=0.279 Sum_probs=61.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHHHH---HHHHh---cCCcEEEeccCCCCChHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV---TFHRK---KNLQYYEISAKSNYNFEKP 72 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~~~---~~~~~---~~~~~~e~Sak~~~~v~~l 72 (130)
|+|.++++.|+....-.+.+.... .++|+++..||.|+.+.....+.. ..+.. ...++..+||.+|.||++.
T Consensus 99 viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~eg 178 (197)
T KOG0076|consen 99 VIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEG 178 (197)
T ss_pred eecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHH
Confidence 578888899988877555554432 699999999999997633222211 12222 2367999999999999999
Q ss_pred HHHHHHHHhcC
Q 032955 73 FLYLARKLAGD 83 (130)
Q Consensus 73 f~~l~~~i~~~ 83 (130)
..++++.+.++
T Consensus 179 i~w~v~~~~kn 189 (197)
T KOG0076|consen 179 IEWLVKKLEKN 189 (197)
T ss_pred HHHHHHHHhhc
Confidence 99999998765
No 190
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.20 E-value=7.1e-06 Score=63.63 Aligned_cols=78 Identities=15% Similarity=0.153 Sum_probs=49.1
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-HHHHHHh----cCCcEEEeccCCCCChHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRK----KNLQYYEISAKSNYNFEKPFLY 75 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~~~~~~~----~~~~~~e~Sak~~~~v~~lf~~ 75 (130)
|+|+++..+..... +...+.. .+.|+++|+||+|+.+.....+ ....... ...+++++||++|.|++++|..
T Consensus 262 ViD~~~~~~~~~~~-i~~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~ 338 (435)
T PRK00093 262 VIDATEGITEQDLR-IAGLALE--AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEA 338 (435)
T ss_pred EEeCCCCCCHHHHH-HHHHHHH--cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHH
Confidence 46666654444332 2222322 4789999999999864221111 1122222 2468999999999999999998
Q ss_pred HHHHHh
Q 032955 76 LARKLA 81 (130)
Q Consensus 76 l~~~i~ 81 (130)
+.+...
T Consensus 339 i~~~~~ 344 (435)
T PRK00093 339 IDEAYE 344 (435)
T ss_pred HHHHHH
Confidence 887553
No 191
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.16 E-value=1.1e-05 Score=53.54 Aligned_cols=54 Identities=9% Similarity=0.079 Sum_probs=38.0
Q ss_pred CCcEEEEecCCCCCCcc-cC---HHHHHHHH--hcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955 26 NIPIVLCGNKVDVKNRQ-VK---AKQVTFHR--KKNLQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~~-v~---~~~~~~~~--~~~~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
+.|+++|+||+|+.... .. ......+. ....+++.+||+++.|+.+++..|.+.
T Consensus 110 ~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 110 GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 58999999999985311 11 11122222 233579999999999999999998765
No 192
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.16 E-value=7.5e-06 Score=58.74 Aligned_cols=51 Identities=24% Similarity=0.201 Sum_probs=38.7
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
..+|+++|+||+|+.. ..+...++.. ..++++||++|.|++++|..+.+.+
T Consensus 175 ~y~p~iiV~NK~Dl~~---~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 175 VYIPCLYVYNKIDLIS---IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred eEeeEEEEEECccCCC---HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 3579999999999853 1223344432 4589999999999999999988754
No 193
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.15 E-value=6.1e-06 Score=57.03 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=39.4
Q ss_pred CCCcEEEEecCCCCCCcccCH---HHH-HHHHhc------CCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955 25 ENIPIVLCGNKVDVKNRQVKA---KQV-TFHRKK------NLQYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~---~~~-~~~~~~------~~~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
.++|+++|.||+|+....... +.. .+.+.. ..+++.+||++|.|++++++.|.+.++
T Consensus 121 ~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 121 LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 478999999999986322111 111 233333 246999999999999999999988764
No 194
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.12 E-value=1.3e-05 Score=62.21 Aligned_cols=51 Identities=27% Similarity=0.328 Sum_probs=38.4
Q ss_pred CCcEEEEecCCCCCCcccCHHHHHHHHhcCCc-EEEeccCCCCChHHHHHHHHHH
Q 032955 26 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~-~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
+.|+++|+||+|+.+.. ....++ ..+++. ++++||++|.|++++|+.+...
T Consensus 109 ~~piilv~NK~D~~~~~--~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~~ 160 (435)
T PRK00093 109 NKPVILVVNKVDGPDEE--ADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILEE 160 (435)
T ss_pred CCcEEEEEECccCccch--hhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHhh
Confidence 78999999999975421 112222 345654 8999999999999999999874
No 195
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=9.9e-06 Score=55.70 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=58.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHHHHHHH-----HhcCCcEEEeccCCCCChHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~~~~~~-----~~~~~~~~e~Sak~~~~v~~lf 73 (130)
|+|-++++.+.....-+..+.... .++|+++.+||.|+++..-..+..... ......+..|+|.+|.|+.+.+
T Consensus 91 VvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl 170 (181)
T KOG0070|consen 91 VVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGL 170 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHH
Confidence 578888888888877666665543 589999999999997622212211111 1223457889999999999999
Q ss_pred HHHHHHHhc
Q 032955 74 LYLARKLAG 82 (130)
Q Consensus 74 ~~l~~~i~~ 82 (130)
++|...+..
T Consensus 171 ~wl~~~~~~ 179 (181)
T KOG0070|consen 171 DWLSNNLKK 179 (181)
T ss_pred HHHHHHHhc
Confidence 999988754
No 196
>COG2262 HflX GTPases [General function prediction only]
Probab=98.12 E-value=2.2e-05 Score=60.09 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=57.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh-CCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
|+|.+++...+++..-...+... ...+|+|+|.||+|+..... .........-..+.+||++|.|++.++..|...
T Consensus 278 VVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~ 354 (411)
T COG2262 278 VVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELERGSPNPVFISAKTGEGLDLLRERIIEL 354 (411)
T ss_pred EeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh---hhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHH
Confidence 67899987777766655555554 35799999999999754221 111111111158999999999999999999998
Q ss_pred HhcCCC
Q 032955 80 LAGDPN 85 (130)
Q Consensus 80 i~~~~~ 85 (130)
+.....
T Consensus 355 l~~~~~ 360 (411)
T COG2262 355 LSGLRT 360 (411)
T ss_pred hhhccc
Confidence 875543
No 197
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.08 E-value=1.4e-05 Score=66.24 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=54.5
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
|+|.++.+ ....|..++.+ .++|+++|.||+|+.+ +.+......+.+.+|++++.+||++|.|++++++.+...
T Consensus 92 VvDat~le---r~l~l~~ql~e--~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 92 VVDASNLE---RNLYLTLQLLE--LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRH 166 (772)
T ss_pred EecCCcch---hhHHHHHHHHH--cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHh
Confidence 45665533 22334444444 3799999999999864 444444556777889999999999999999999888765
Q ss_pred H
Q 032955 80 L 80 (130)
Q Consensus 80 i 80 (130)
.
T Consensus 167 ~ 167 (772)
T PRK09554 167 Q 167 (772)
T ss_pred h
Confidence 4
No 198
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.06 E-value=1.9e-05 Score=58.88 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=54.4
Q ss_pred CeecCcH---HHHHhHHHHHHHHHHhC---CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCc-EEEeccCCCCChHHHH
Q 032955 1 MFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~---~s~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~-~~e~Sak~~~~v~~lf 73 (130)
|+|++.. +.++++.....++..+. .+.|.++|+||+|+++.+- ....+++....-+ +|.+||++++|+.++.
T Consensus 281 VvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~-~~l~~L~~~lq~~~V~pvsA~~~egl~~ll 359 (366)
T KOG1489|consen 281 VVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK-NLLSSLAKRLQNPHVVPVSAKSGEGLEELL 359 (366)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH-HHHHHHHHHcCCCcEEEeeeccccchHHHH
Confidence 5677777 67777777666666553 5889999999999853110 1124556555433 8999999999999998
Q ss_pred HHHHH
Q 032955 74 LYLAR 78 (130)
Q Consensus 74 ~~l~~ 78 (130)
..|..
T Consensus 360 ~~lr~ 364 (366)
T KOG1489|consen 360 NGLRE 364 (366)
T ss_pred HHHhh
Confidence 76643
No 199
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.03 E-value=2.9e-05 Score=60.03 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=41.7
Q ss_pred CCcEEEEecCCCCCCcccCHHHHHHHHhcCC-cEEEeccCCCCChHHHHHHHHHHHhc
Q 032955 26 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
+.|+++|+||+|+.+... ...+ +.++++ .+|.+||++|.|+.++++.+...+..
T Consensus 107 ~~piilVvNK~D~~~~~~--~~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 107 GKPVILVANKIDGKKEDA--VAAE-FYSLGFGEPIPISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred CCCEEEEEECccCCcccc--cHHH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCc
Confidence 789999999999864221 1122 335665 69999999999999999999988754
No 200
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.03 E-value=2.1e-05 Score=64.80 Aligned_cols=75 Identities=24% Similarity=0.211 Sum_probs=49.0
Q ss_pred CeecCcHHHHHhHH-HHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCC-cEEEeccCCCCChHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 1 V~d~~~~~s~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
|+|.++. +.... .|...+.. .+.|+++|+||+|+.... .....+. ..+. ..|++||++|.||+++|.+|+.
T Consensus 361 VvDa~~~--~~~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~--~~~~~~~-~lg~~~~~~iSA~~g~GI~eLl~~i~~ 433 (712)
T PRK09518 361 VVDGQVG--LTSTDERIVRMLRR--AGKPVVLAVNKIDDQASE--YDAAEFW-KLGLGEPYPISAMHGRGVGDLLDEALD 433 (712)
T ss_pred EEECCCC--CCHHHHHHHHHHHh--cCCCEEEEEECcccccch--hhHHHHH-HcCCCCeEEEECCCCCCchHHHHHHHH
Confidence 4666542 22222 35554443 589999999999985421 1112221 2332 3678999999999999999999
Q ss_pred HHhc
Q 032955 79 KLAG 82 (130)
Q Consensus 79 ~i~~ 82 (130)
.+..
T Consensus 434 ~l~~ 437 (712)
T PRK09518 434 SLKV 437 (712)
T ss_pred hccc
Confidence 8755
No 201
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.03 E-value=2.1e-05 Score=52.47 Aligned_cols=52 Identities=19% Similarity=0.326 Sum_probs=39.9
Q ss_pred CCcEEEEecCCCCCCcccCHH-HHHHHHhcCC-cEEEeccCCCCChHHHHHHHH
Q 032955 26 NIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNL-QYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l~ 77 (130)
+.|+|-|.||+|+.......+ +.+++...|+ ..|++|+.+|.||++|..+|-
T Consensus 89 ~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 89 NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 689999999999973222222 4566677775 379999999999999998763
No 202
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.01 E-value=1.9e-05 Score=65.02 Aligned_cols=56 Identities=23% Similarity=0.253 Sum_probs=39.8
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHH------HHhcC--CcEEEeccCCCCChHHHHHHHHHHH
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAKQVTF------HRKKN--LQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~------~~~~~--~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
.++|+|+|+||+|+.+.........+ ...++ ++++++||++|.||+++|..|....
T Consensus 346 ~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 346 ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred cCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 47899999999998652211111111 22233 6799999999999999999888754
No 203
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.00 E-value=2.4e-05 Score=63.11 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=37.7
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHHH-------hcC--CcEEEeccCCCCChHHHHHHHHH
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAKQVTFHR-------KKN--LQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~-------~~~--~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
.++|+++++||+|+.+... ......+. .++ .+++++||++|.|++++|..|..
T Consensus 186 ~~vPiIVviNKiDl~~~~~-e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 186 ANVPIIVAINKIDKPEANP-DRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred cCCCEEEEEECcccccCCH-HHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 4799999999999864211 11122222 222 46999999999999999998874
No 204
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.98 E-value=1.9e-05 Score=53.09 Aligned_cols=56 Identities=9% Similarity=0.020 Sum_probs=37.1
Q ss_pred CCCcEEEEecCCCCCCcc-cCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955 25 ENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~-v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
.+.|+++|.||+|+..+. .......+.+.+....+.+||+.+.|++++...+....
T Consensus 38 ~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 38 PHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred CCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccccHHHHHHHHHHHH
Confidence 468999999999985422 11111222222223357899999999999998887654
No 205
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.98 E-value=9.2e-06 Score=53.72 Aligned_cols=65 Identities=14% Similarity=0.226 Sum_probs=41.0
Q ss_pred CeecCcHHHHH--hHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCC
Q 032955 1 MFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN 68 (130)
Q Consensus 1 V~d~~~~~s~~--~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~ 68 (130)
|+|++++.+.. .+..|+... ..+.|+++|.||+|+.++..-.....+++..+..++.+||+++.+
T Consensus 18 ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~~ 84 (141)
T cd01857 18 IVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKENA 84 (141)
T ss_pred EEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCCc
Confidence 46777665433 344454432 247899999999998542211122344555667899999998764
No 206
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=97.93 E-value=7.9e-05 Score=57.75 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=39.1
Q ss_pred CcEEEEecCCCCCCcccC----HHHHHHHHh---cCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955 27 IPIVLCGNKVDVKNRQVK----AKQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 27 ~piilv~NK~Dl~~~~v~----~~~~~~~~~---~~~~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
.|+++|+||+|+.+.... .+...++.. .+.+++.+||++|.|++++++.|...+.
T Consensus 140 ~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 140 KNIVIVQNKIDLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred CcEEEEEEeeccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 468999999998652111 112233332 1467999999999999999999988664
No 207
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.92 E-value=2.1e-05 Score=53.80 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=31.6
Q ss_pred CCCcEEEEecCCCCCCc-ccC---HHHHHHHHhcC--CcEEEeccCCCCChH
Q 032955 25 ENIPIVLCGNKVDVKNR-QVK---AKQVTFHRKKN--LQYYEISAKSNYNFE 70 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~-~v~---~~~~~~~~~~~--~~~~e~Sak~~~~v~ 70 (130)
.+.|+++|+||+|+... ... .+....+...+ ..+|.+||++|.||+
T Consensus 128 ~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 128 RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 37899999999998641 111 12233444443 479999999999974
No 208
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.91 E-value=5.5e-05 Score=59.20 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=44.0
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHHHhcCC---cEEEeccCCCCChHHHHHHHHHHHhc
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~---~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
.+..+|.|.||+||+.-.+..-..+.-.-.|+ ..+.+|||+|.||+++++.++..++-
T Consensus 127 ~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 127 NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence 48899999999999874433323333344554 37899999999999999999988854
No 209
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.91 E-value=3e-05 Score=52.86 Aligned_cols=57 Identities=21% Similarity=0.234 Sum_probs=40.0
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
.+.|+++|.||+|+.+.........+.+..+..++.+||+++.|++++...+...+.
T Consensus 45 ~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 45 GNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred cCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 367999999999985421111111233333456899999999999999999888753
No 210
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.91 E-value=3.6e-05 Score=63.91 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=39.2
Q ss_pred CCCcEEEEecCCCCCCcc---cCHHHH---HHHHhcC--CcEEEeccCCCCChHHHHHHHHHH
Q 032955 25 ENIPIVLCGNKVDVKNRQ---VKAKQV---TFHRKKN--LQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~---v~~~~~---~~~~~~~--~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
.++|+|+++||+|+.+.. +..+.. .++..++ +++|++||++|.||+++|..|...
T Consensus 388 ~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 388 AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 479999999999996421 111111 1123333 679999999999999999988753
No 211
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=97.90 E-value=6.2e-05 Score=50.43 Aligned_cols=77 Identities=18% Similarity=0.270 Sum_probs=51.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHHHHhcC--------CcEEEeccCCCCChH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--------LQYYEISAKSNYNFE 70 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~--------~~~~e~Sak~~~~v~ 70 (130)
|+|..+++.+...+.-++.+... ..++|+++.|||.|+++-- +.. .+..++| +..|.+|+++..||+
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL-~~~--~li~rmgL~sitdREvcC~siScke~~Nid 171 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL-SKI--ALIERMGLSSITDREVCCFSISCKEKVNID 171 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc-cHH--HHHHHhCccccccceEEEEEEEEcCCccHH
Confidence 35666666665555444333322 2589999999999986522 221 2222333 458999999999999
Q ss_pred HHHHHHHHHH
Q 032955 71 KPFLYLARKL 80 (130)
Q Consensus 71 ~lf~~l~~~i 80 (130)
.+..+|.+..
T Consensus 172 ~~~~Wli~hs 181 (186)
T KOG0075|consen 172 ITLDWLIEHS 181 (186)
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 212
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.89 E-value=2.4e-06 Score=54.44 Aligned_cols=62 Identities=21% Similarity=0.257 Sum_probs=44.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE 70 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~ 70 (130)
||+.++..||+.+ |...+.... .++|.++++||.|+.+.. .++.+.+..|+++|+++|.|+.
T Consensus 53 v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~------~~~~~~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 53 CWRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEER------QVATEEGLEFAETSAKTPEEGE 115 (124)
T ss_pred EEEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhC------cCCHHHHHHHHHHhCCCcchhh
Confidence 5899999999766 887766543 468899999999984311 1122223357789999999984
No 213
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=97.85 E-value=6.2e-05 Score=58.19 Aligned_cols=55 Identities=20% Similarity=0.263 Sum_probs=39.2
Q ss_pred CcEEEEecCCCCCCcc-cC---HHHHHHHHhc---CCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955 27 IPIVLCGNKVDVKNRQ-VK---AKQVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 27 ~piilv~NK~Dl~~~~-v~---~~~~~~~~~~---~~~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
.|+++|+||+|+.+.. .. .+...+.... +++++.+||++|.|++++++.|...+.
T Consensus 135 ~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 135 KNIVIVQNKIDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred CeEEEEEEccccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 4689999999986521 11 1122333322 568999999999999999999988654
No 214
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.84 E-value=3.5e-05 Score=54.15 Aligned_cols=54 Identities=17% Similarity=0.145 Sum_probs=38.9
Q ss_pred CCcEEEEecCCCCCCcc-cCH-HHHHHHHhcC--CcEEEeccCCCCChHHHHHHHHHH
Q 032955 26 NIPIVLCGNKVDVKNRQ-VKA-KQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~~-v~~-~~~~~~~~~~--~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
..+.++++||+|+.+.. ... ......++.+ .+++++||++|.|++++|+++.+.
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999996421 111 2223333333 789999999999999999999874
No 215
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.84 E-value=5.3e-05 Score=53.17 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=37.2
Q ss_pred EEEecCCCCCCc-ccCHH-HHHHHHh--cCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955 30 VLCGNKVDVKNR-QVKAK-QVTFHRK--KNLQYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 30 ilv~NK~Dl~~~-~v~~~-~~~~~~~--~~~~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
++++||+|+.+. ....+ ....++. .+.++|++||++|.|++++|+++.+.+.
T Consensus 141 ~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 141 LLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred EEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 889999999631 11111 2233333 3478999999999999999999987654
No 216
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=5.5e-05 Score=59.95 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=42.7
Q ss_pred CCCcEEEEecCCCCCCccc---CHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955 25 ENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v---~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
.+.-+|.|.||+|++.... ......+....+.+.+.+|||+|.|+++++..+++.+.
T Consensus 176 ~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 176 AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCC
Confidence 4889999999999986322 22223333333456899999999999999999998874
No 217
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.81 E-value=9.4e-05 Score=59.74 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=21.2
Q ss_pred CcEEEeccCCCCChHHHHHHHHHH
Q 032955 56 LQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 56 ~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
.+++.+||++|.|++++...|...
T Consensus 191 v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 191 VAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred ceEEEeecCCCCChhHHHHHHHHH
Confidence 579999999999999999888653
No 218
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.79 E-value=0.00014 Score=59.12 Aligned_cols=56 Identities=11% Similarity=0.101 Sum_probs=39.5
Q ss_pred CCc-EEEEecCCCCCCc-ccC---HHHHHHHHhcC---CcEEEeccCCCCChHHHHHHHHHHHh
Q 032955 26 NIP-IVLCGNKVDVKNR-QVK---AKQVTFHRKKN---LQYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 26 ~~p-iilv~NK~Dl~~~-~v~---~~~~~~~~~~~---~~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
++| +++|+||+|+.+. .+. .+...++...+ .++|.+||++|.|+++++..|.....
T Consensus 103 gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 103 GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 455 5799999998642 111 12233444443 57999999999999999999887553
No 219
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.79 E-value=4.2e-05 Score=59.41 Aligned_cols=74 Identities=22% Similarity=0.116 Sum_probs=43.7
Q ss_pred CeecCcHHHHHhHHH-HHHHHHHhCCCCcEEEEecCCCCCC-cc--c---CHHHHHHHHhcC-----CcEEEeccCCCCC
Q 032955 1 MFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN-RQ--V---KAKQVTFHRKKN-----LQYYEISAKSNYN 68 (130)
Q Consensus 1 V~d~~~~~s~~~~~~-~~~~~~~~~~~~piilv~NK~Dl~~-~~--v---~~~~~~~~~~~~-----~~~~e~Sak~~~~ 68 (130)
|||+++.+++..... +...+.......++++|+||+|+.+ .. . ..+...++...+ ++++++||++|.|
T Consensus 115 VvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~n 194 (426)
T TIGR00483 115 VVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDN 194 (426)
T ss_pred EEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccc
Confidence 577777653321111 1111222233457999999999963 11 1 122334555554 5799999999999
Q ss_pred hHHHHH
Q 032955 69 FEKPFL 74 (130)
Q Consensus 69 v~~lf~ 74 (130)
|.+++.
T Consensus 195 i~~~~~ 200 (426)
T TIGR00483 195 VIKKSE 200 (426)
T ss_pred cccccc
Confidence 987553
No 220
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.73 E-value=0.00014 Score=53.93 Aligned_cols=77 Identities=17% Similarity=0.081 Sum_probs=55.2
Q ss_pred eecCcHH-HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCH--HHHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955 2 FDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 2 ~d~~~~~-s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~--~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
++..+|+ +...+.+++-.. ...++.-|+|.||+||.+..-.. +........|++.+.+|++++.+++++...+..
T Consensus 87 vs~~~P~~~~~~ldR~Lv~a--e~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 87 VSLVDPDFNTNLLDRYLVLA--EAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEELAELLAG 164 (301)
T ss_pred EeccCCCCCHHHHHHHHHHH--HHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHHHHHhcC
Confidence 4455554 666777766433 33688888999999997633222 234556678999999999999999999887766
Q ss_pred HH
Q 032955 79 KL 80 (130)
Q Consensus 79 ~i 80 (130)
.+
T Consensus 165 ~~ 166 (301)
T COG1162 165 KI 166 (301)
T ss_pred Ce
Confidence 43
No 221
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.68 E-value=0.00011 Score=53.92 Aligned_cols=58 Identities=21% Similarity=0.268 Sum_probs=40.6
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
.+.|+++|.||+|+.+.........+..+.+..++.+||+++.|++++...+...+..
T Consensus 47 ~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 47 GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 3689999999999954211111112233345678999999999999999888877644
No 222
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.67 E-value=0.00011 Score=59.37 Aligned_cols=79 Identities=11% Similarity=0.166 Sum_probs=50.9
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc---cCHHHHHHHH-------hcCCcEEEeccCCCC---
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---VKAKQVTFHR-------KKNLQYYEISAKSNY--- 67 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---v~~~~~~~~~-------~~~~~~~e~Sak~~~--- 67 (130)
|+|.++. .+.....|+..+.. .++|+++|+||+|+.+.. +..+...+.. +..++++.+||++|.
T Consensus 94 VVDa~~G-~~~qT~~~l~~a~~--~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~ 170 (594)
T TIGR01394 94 LVDASEG-PMPQTRFVLKKALE--LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASL 170 (594)
T ss_pred EEeCCCC-CcHHHHHHHHHHHH--CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccc
Confidence 3555432 23334455555544 478999999999986522 1122223322 235689999999996
Q ss_pred -------ChHHHHHHHHHHHhc
Q 032955 68 -------NFEKPFLYLARKLAG 82 (130)
Q Consensus 68 -------~v~~lf~~l~~~i~~ 82 (130)
|+..+|+.++..+..
T Consensus 171 ~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 171 DLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred cCcccccCHHHHHHHHHHhCCC
Confidence 799999998887753
No 223
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.00013 Score=48.72 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=52.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHH-h-CCCCcEEEEecCCCCCCcccCHHH-----HHHHHhcCCcEEEeccCCCCChHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCR-V-CENIPIVLCGNKVDVKNRQVKAKQ-----VTFHRKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~-~-~~~~piilv~NK~Dl~~~~v~~~~-----~~~~~~~~~~~~e~Sak~~~~v~~lf 73 (130)
|+|.+|.+........+..+.+ . -.+..++++.||.|...+....+. ....+......|++||-+|.|++.++
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~ 171 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM 171 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence 4566666544433332222222 1 146889999999998664332221 12223333679999999999999999
Q ss_pred HHHHHHHhc
Q 032955 74 LYLARKLAG 82 (130)
Q Consensus 74 ~~l~~~i~~ 82 (130)
+||.+.+..
T Consensus 172 DWL~~~l~~ 180 (182)
T KOG0072|consen 172 DWLQRPLKS 180 (182)
T ss_pred HHHHHHHhc
Confidence 999987754
No 224
>PRK01889 GTPase RsgA; Reviewed
Probab=97.66 E-value=0.00018 Score=54.76 Aligned_cols=73 Identities=10% Similarity=0.111 Sum_probs=47.0
Q ss_pred eecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHH-hcCCcEEEeccCCCCChHHHHHHHH
Q 032955 2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR-KKNLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 2 ~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~-~~~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
+++...-+...+++++..+.. .+++.++|.||+||.+.. ......+.. ..++++|.+|+++|.|++++...|.
T Consensus 120 ~s~~p~~~~~~ldr~L~~a~~--~~i~piIVLNK~DL~~~~-~~~~~~~~~~~~g~~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 120 CSLNHDFNLRRIERYLALAWE--SGAEPVIVLTKADLCEDA-EEKIAEVEALAPGVPVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred EecCCCCChhHHHHHHHHHHH--cCCCEEEEEEChhcCCCH-HHHHHHHHHhCCCCcEEEEECCCCccHHHHHHHhh
Confidence 344322244456666654443 578889999999996421 111112211 3467899999999999999888774
No 225
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.63 E-value=0.00023 Score=53.63 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=49.3
Q ss_pred HHhHHHHHHHHHHhC---CCCcEEEEecCCCCCCcccC-HH-HHHHHHhcCCcEEE-eccCCCCChHHHHHHHHHHHhcC
Q 032955 10 YKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVK-AK-QVTFHRKKNLQYYE-ISAKSNYNFEKPFLYLARKLAGD 83 (130)
Q Consensus 10 ~~~~~~~~~~~~~~~---~~~piilv~NK~Dl~~~~v~-~~-~~~~~~~~~~~~~e-~Sak~~~~v~~lf~~l~~~i~~~ 83 (130)
.+.......++..+. .+.|.++|.||+|+...... .. ...+....+...+. +||.++.|++++...+.+.+...
T Consensus 256 ~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 256 IEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred HHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 555555566666664 48899999999996432111 11 22333344433222 99999999999999998887665
Q ss_pred C
Q 032955 84 P 84 (130)
Q Consensus 84 ~ 84 (130)
.
T Consensus 336 ~ 336 (369)
T COG0536 336 K 336 (369)
T ss_pred h
Confidence 4
No 226
>PRK13768 GTPase; Provisional
Probab=97.63 E-value=0.00028 Score=51.32 Aligned_cols=59 Identities=15% Similarity=0.261 Sum_probs=41.5
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHH----------------------------HHHhcC--CcEEEeccCCCCChHHHHH
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAKQVT----------------------------FHRKKN--LQYYEISAKSNYNFEKPFL 74 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~----------------------------~~~~~~--~~~~e~Sak~~~~v~~lf~ 74 (130)
.+.|+++|.||+|+........... .....+ .+++.+|++++.|++++..
T Consensus 161 ~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~ 240 (253)
T PRK13768 161 LGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYA 240 (253)
T ss_pred cCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHH
Confidence 4899999999999864221111111 112333 5789999999999999999
Q ss_pred HHHHHHhcC
Q 032955 75 YLARKLAGD 83 (130)
Q Consensus 75 ~l~~~i~~~ 83 (130)
.|.+.+...
T Consensus 241 ~I~~~l~~~ 249 (253)
T PRK13768 241 AIQEVFCGG 249 (253)
T ss_pred HHHHHcCCC
Confidence 998887543
No 227
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.62 E-value=0.0003 Score=50.24 Aligned_cols=53 Identities=13% Similarity=0.285 Sum_probs=35.1
Q ss_pred CCCcEEEEecCCCCCCc-ccCHH---HHHHHH--------------------------hcCCcEEEeccCCCCChHHHHH
Q 032955 25 ENIPIVLCGNKVDVKNR-QVKAK---QVTFHR--------------------------KKNLQYYEISAKSNYNFEKPFL 74 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~-~v~~~---~~~~~~--------------------------~~~~~~~e~Sak~~~~v~~lf~ 74 (130)
.++|+++|.||+|+.++ ..... ...+.. ....++|.+||.+|.|++++..
T Consensus 137 ~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~ 216 (224)
T cd04165 137 LNIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHA 216 (224)
T ss_pred cCCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHH
Confidence 37899999999998542 11111 111221 0124799999999999999887
Q ss_pred HHH
Q 032955 75 YLA 77 (130)
Q Consensus 75 ~l~ 77 (130)
.|.
T Consensus 217 ~L~ 219 (224)
T cd04165 217 FLN 219 (224)
T ss_pred HHH
Confidence 553
No 228
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00034 Score=55.20 Aligned_cols=56 Identities=16% Similarity=0.225 Sum_probs=39.5
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHH------HHhcC--CcEEEeccCCCCChHHHHHHHHHHH
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAKQVTF------HRKKN--LQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~------~~~~~--~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
.++|+++..||+|..+........++ ...|+ ..++.+||++|.|+++|+..++...
T Consensus 106 a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 106 AGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred CCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence 58999999999998752211111111 12333 4699999999999999998877644
No 229
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.56 E-value=0.00012 Score=56.86 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=32.7
Q ss_pred CcEEEEecCCCCCCc-c--c---CHHHHHHHHhcC-----CcEEEeccCCCCChHHHHH
Q 032955 27 IPIVLCGNKVDVKNR-Q--V---KAKQVTFHRKKN-----LQYYEISAKSNYNFEKPFL 74 (130)
Q Consensus 27 ~piilv~NK~Dl~~~-~--v---~~~~~~~~~~~~-----~~~~e~Sak~~~~v~~lf~ 74 (130)
.++++|+||+|+.+. . . ..+...++...+ .+++.+||++|.|+++++.
T Consensus 140 ~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 140 NQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred CeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 469999999998641 1 1 112234444444 4699999999999987653
No 230
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.50 E-value=0.00025 Score=52.41 Aligned_cols=57 Identities=23% Similarity=0.297 Sum_probs=40.4
Q ss_pred CCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955 26 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
+.|+++|.||+|+.+.........+..+.+..++.+||+++.|++++...+...+..
T Consensus 51 ~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 51 NKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred CCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 689999999999854211111122233445678999999999999999888776644
No 231
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.47 E-value=0.00051 Score=58.69 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=21.2
Q ss_pred CcEEEeccCCCCChHHHHHHHHHHH
Q 032955 56 LQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 56 ~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
.+++.+||++|.||+++...|....
T Consensus 648 v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 648 VAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 5789999999999999998776543
No 232
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.41 E-value=0.0009 Score=54.16 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.3
Q ss_pred CcEEEeccCCCCChHHHHHHHHH
Q 032955 56 LQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 56 ~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
.+++.+||++|.|+++++..+..
T Consensus 193 v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 193 VAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred ceEeeccCCCCCChHHHHHHHHH
Confidence 56899999999999999988764
No 233
>COG2229 Predicted GTPase [General function prediction only]
Probab=97.35 E-value=0.0013 Score=45.40 Aligned_cols=76 Identities=20% Similarity=0.156 Sum_probs=50.7
Q ss_pred eecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHH-h-cCCcEEEeccCCCCChHHHHHHHHHH
Q 032955 2 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR-K-KNLQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 2 ~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~-~-~~~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
+|.+.+..| +....+..+... ..+|+++..||.||.+..-.....++.. . .+.+.++++|.++.++.+....+...
T Consensus 99 VDss~~~~~-~a~~ii~f~~~~-~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 99 VDSSRPITF-HAEEIIDFLTSR-NPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred EecCCCcch-HHHHHHHHHhhc-cCCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence 455666666 333444433332 2399999999999987443333333333 3 37899999999999998887776654
No 234
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.31 E-value=0.00033 Score=49.62 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=29.8
Q ss_pred CCcEEEEecCCCCCCcccC--------HHHHHHHHhcC-----CcEEEeccCCCCChH
Q 032955 26 NIPIVLCGNKVDVKNRQVK--------AKQVTFHRKKN-----LQYYEISAKSNYNFE 70 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~~v~--------~~~~~~~~~~~-----~~~~e~Sak~~~~v~ 70 (130)
..|+++|.||+|+.....+ .....+....+ .+++.+||++|.||+
T Consensus 137 ~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 137 VKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred CCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 4689999999998631111 11112333433 569999999999987
No 235
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.27 E-value=0.00069 Score=47.59 Aligned_cols=46 Identities=24% Similarity=0.260 Sum_probs=30.3
Q ss_pred CcEEEEecCCCCCCccc------CHHHHHHHHhcC---CcEEEeccCCCCChHHH
Q 032955 27 IPIVLCGNKVDVKNRQV------KAKQVTFHRKKN---LQYYEISAKSNYNFEKP 72 (130)
Q Consensus 27 ~piilv~NK~Dl~~~~v------~~~~~~~~~~~~---~~~~e~Sak~~~~v~~l 72 (130)
.++|+|.||+|+.+..- ..+...++..++ .+++.+||++|.|+.+.
T Consensus 131 ~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 131 RHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred CcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 45788999999864110 111233445555 34899999999998743
No 236
>PRK09866 hypothetical protein; Provisional
Probab=97.21 E-value=0.002 Score=52.58 Aligned_cols=53 Identities=23% Similarity=0.253 Sum_probs=36.1
Q ss_pred CCcEEEEecCCCCCCccc-CHH-HHHHH----HhcC---CcEEEeccCCCCChHHHHHHHHH
Q 032955 26 NIPIVLCGNKVDVKNRQV-KAK-QVTFH----RKKN---LQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~~v-~~~-~~~~~----~~~~---~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
+.|+++|.||+|+.++.- ..+ ...+. .+.+ ..+|.+||+.|.|++.++..|..
T Consensus 289 ~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 289 SVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 369999999999854221 111 22222 1222 24899999999999999987775
No 237
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.0013 Score=53.47 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=48.8
Q ss_pred CCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHhcCC
Q 032955 25 ENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 84 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~~~ 84 (130)
-+.|++++.|++|..+ +.+......+.+..|++++.+||++|.|++++...+.+....+.
T Consensus 107 ~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 107 LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhccccc
Confidence 4889999999999865 44444456677889999999999999999999998887665544
No 238
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.18 E-value=0.0016 Score=42.68 Aligned_cols=52 Identities=21% Similarity=0.220 Sum_probs=39.8
Q ss_pred CcEEEEecCCCCCC-cccCHHHHHHHHhcC-CcEEEeccCCCCChHHHHHHHHHH
Q 032955 27 IPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 27 ~piilv~NK~Dl~~-~~v~~~~~~~~~~~~-~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
.|+|-|.+|+||.+ ..++. ...|..+.| -++|++|+.++.||++++..|...
T Consensus 91 k~vIgvVTK~DLaed~dI~~-~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 91 KKVIGVVTKADLAEDADISL-VKRWLREAGAEPIFETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred cceEEEEecccccchHhHHH-HHHHHHHcCCcceEEEeccCcccHHHHHHHHHhh
Confidence 45999999999985 22221 346667777 469999999999999999988653
No 239
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.16 E-value=0.0019 Score=50.85 Aligned_cols=55 Identities=22% Similarity=0.379 Sum_probs=38.0
Q ss_pred CcEEEEecCCCCCCcc-cC---HHHHHHHHh---cCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955 27 IPIVLCGNKVDVKNRQ-VK---AKQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 27 ~piilv~NK~Dl~~~~-v~---~~~~~~~~~---~~~~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
.++|+|.||+|+.+.. .. .+...+... .+.++|.+||++|.|++.|++.|...+.
T Consensus 172 ~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 172 KHIIILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred CcEEEEEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 4689999999986411 11 111222222 2468999999999999999998886553
No 240
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.15 E-value=0.0022 Score=44.95 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=29.4
Q ss_pred CeecCcH-HHHHhHHHHHHHHHHh----CCCCcEEEEecCCCCCC
Q 032955 1 MFDVTAR-LTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKN 40 (130)
Q Consensus 1 V~d~~~~-~s~~~~~~~~~~~~~~----~~~~piilv~NK~Dl~~ 40 (130)
|+|.++. .++..+..|+..+... ..++|+++|+||+|+..
T Consensus 79 VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 79 VVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred EEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 5788776 6777777766554332 25899999999999854
No 241
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.11 E-value=0.002 Score=51.62 Aligned_cols=79 Identities=18% Similarity=0.267 Sum_probs=57.3
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc--cCHHHHHHHHhcCCc-EEEeccCCCCChHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--v~~~~~~~~~~~~~~-~~e~Sak~~~~v~~lf~~l~ 77 (130)
|||.+++.||..+....+..... ...|+++|+.|+|+.+.. .+....+++.+++++ .+.+|.++... .++|..|+
T Consensus 502 ~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL~ 579 (625)
T KOG1707|consen 502 VYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIKLA 579 (625)
T ss_pred ecccCCchHHHHHHHHHHHhhhc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHHHH
Confidence 69999999999887755443322 689999999999997622 332336788888865 45666665223 78999998
Q ss_pred HHHh
Q 032955 78 RKLA 81 (130)
Q Consensus 78 ~~i~ 81 (130)
..+.
T Consensus 580 ~~A~ 583 (625)
T KOG1707|consen 580 TMAQ 583 (625)
T ss_pred Hhhh
Confidence 8764
No 242
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=97.10 E-value=0.0015 Score=50.99 Aligned_cols=56 Identities=16% Similarity=0.177 Sum_probs=41.9
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHhcC
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 83 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~~ 83 (130)
.+.|+++|.||+||......... ++ ..+.+++.+||++|.|++.+...|...+...
T Consensus 323 ~~~~~i~v~NK~DL~~~~~~~~~-~~--~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 323 KKKPIIVVLNKADLVSKIELESE-KL--ANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred cCCCEEEEEechhcccccccchh-hc--cCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 57899999999999753321111 11 2245689999999999999999998887655
No 243
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.10 E-value=0.0012 Score=46.27 Aligned_cols=51 Identities=10% Similarity=0.072 Sum_probs=36.2
Q ss_pred EEEecCCCCCCcc-cCHH-HHHHHHhc--CCcEEEeccCCCCChHHHHHHHHHHH
Q 032955 30 VLCGNKVDVKNRQ-VKAK-QVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 30 ilv~NK~Dl~~~~-v~~~-~~~~~~~~--~~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
++|.||.||.... .+-+ ...-+++. +.+++++|+++|.|+++++.++....
T Consensus 146 llVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 146 LLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred EEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 7899999996521 1222 22333443 37899999999999999998887654
No 244
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.00087 Score=44.68 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=50.2
Q ss_pred eecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCCcccCHHHHHH-----HHhcCCcEEEeccCCCCChHHHHH
Q 032955 2 FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPFL 74 (130)
Q Consensus 2 ~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~~~v~~~~~~~-----~~~~~~~~~e~Sak~~~~v~~lf~ 74 (130)
.|..+++..+..+.-+..+... -.+.++++.+||.|+++-.-..+...+ ++.....+..+||.+|.|+.+-|.
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~egls 171 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLS 171 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHHHH
Confidence 3444444455444433333222 148999999999999873323333322 233345578999999999999999
Q ss_pred HHHHHH
Q 032955 75 YLARKL 80 (130)
Q Consensus 75 ~l~~~i 80 (130)
+|...+
T Consensus 172 wlsnn~ 177 (180)
T KOG0071|consen 172 WLSNNL 177 (180)
T ss_pred HHHhhc
Confidence 998765
No 245
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.005 Score=49.29 Aligned_cols=55 Identities=22% Similarity=0.178 Sum_probs=39.9
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHH------HhcC--CcEEEeccCCCCChHHHHHHHHHH
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAKQVTFH------RKKN--LQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~------~~~~--~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
.++|+|+..||+|.++.....-..++. ..+| .+.+.+||++|.|++.|-+.++..
T Consensus 252 A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 252 ANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLL 314 (683)
T ss_pred cCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHH
Confidence 589999999999976532222223332 2344 568999999999999998887754
No 246
>COG1159 Era GTPase [General function prediction only]
Probab=96.99 E-value=0.0027 Score=47.06 Aligned_cols=61 Identities=23% Similarity=0.278 Sum_probs=42.8
Q ss_pred CCCcEEEEecCCCCCCcccC-HHHHHHHHh-cC-CcEEEeccCCCCChHHHHHHHHHHHhcCCC
Q 032955 25 ENIPIVLCGNKVDVKNRQVK-AKQVTFHRK-KN-LQYYEISAKSNYNFEKPFLYLARKLAGDPN 85 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~-~~~~~~~~~-~~-~~~~e~Sak~~~~v~~lf~~l~~~i~~~~~ 85 (130)
.+.|++++.||+|....... .....++.. .. ...+.+||+.|.|++.+...+...+.+.+.
T Consensus 113 ~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~ 176 (298)
T COG1159 113 TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPW 176 (298)
T ss_pred cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCC
Confidence 36799999999997653321 122222222 22 358999999999999999988888875544
No 247
>PRK10218 GTP-binding protein; Provisional
Probab=96.90 E-value=0.0048 Score=50.25 Aligned_cols=57 Identities=11% Similarity=0.110 Sum_probs=38.6
Q ss_pred CCCcEEEEecCCCCCCcccC---HHHHHHHH-------hcCCcEEEeccCCCC----------ChHHHHHHHHHHHh
Q 032955 25 ENIPIVLCGNKVDVKNRQVK---AKQVTFHR-------KKNLQYYEISAKSNY----------NFEKPFLYLARKLA 81 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~---~~~~~~~~-------~~~~~~~e~Sak~~~----------~v~~lf~~l~~~i~ 81 (130)
.++|+++|.||+|+.+.... .+...+.. ...++++.+||++|. |+..+++.++..+.
T Consensus 119 ~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 119 YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 47899999999998652211 12222221 234679999999998 57778877777664
No 248
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.80 E-value=0.0042 Score=46.22 Aligned_cols=56 Identities=13% Similarity=0.040 Sum_probs=38.1
Q ss_pred CCcEEEEecCCCCCCccc-CH---H---H-HHHHH---hcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955 26 NIPIVLCGNKVDVKNRQV-KA---K---Q-VTFHR---KKNLQYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~~v-~~---~---~-~~~~~---~~~~~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
..|.++|.||+|+..... .. . . ..+.. .+..+++.+||++|.|+++++.++.+...
T Consensus 172 ~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 172 EIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred hhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 578899999999865221 00 0 0 01111 12346899999999999999999988743
No 249
>COG1160 Predicted GTPases [General function prediction only]
Probab=96.76 E-value=0.0073 Score=47.15 Aligned_cols=53 Identities=19% Similarity=0.207 Sum_probs=40.1
Q ss_pred CCCcEEEEecCCCCCCcccCHH-HHHHHHhcCC-cEEEeccCCCCChHHHHHHHHHHHh
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~-~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
.+.|++||.||+|-.. ... .-+| .++|+ ..+.+||.-|.|+.+|.+.++..+.
T Consensus 111 ~~kpviLvvNK~D~~~---~e~~~~ef-yslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 111 SKKPVILVVNKIDNLK---AEELAYEF-YSLGFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred cCCCEEEEEEcccCch---hhhhHHHH-HhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 4799999999999531 111 2233 34564 4899999999999999999999874
No 250
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.75 E-value=0.0035 Score=46.51 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=37.1
Q ss_pred CcEEEEecCCCCCCcc-cCHH-HHHHHHhc--CCcEEEeccCCCCChHHHHHHHHHH
Q 032955 27 IPIVLCGNKVDVKNRQ-VKAK-QVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 27 ~piilv~NK~Dl~~~~-v~~~-~~~~~~~~--~~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
..-++|.||+|+.... ...+ .....+.. ..++|.+||++|.|++++..+|...
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 5668999999996421 1111 22223332 3679999999999999999998764
No 251
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.70 E-value=0.0041 Score=47.04 Aligned_cols=54 Identities=15% Similarity=0.073 Sum_probs=37.0
Q ss_pred EEEEecCCCCCCccc-CH---HHHHHHH-------hcCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955 29 IVLCGNKVDVKNRQV-KA---KQVTFHR-------KKNLQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 29 iilv~NK~Dl~~~~v-~~---~~~~~~~-------~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
-++|.||+|+..... .. +...... .+..+++.+||++|.||++++..|.+....
T Consensus 197 DIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 197 DLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA 261 (332)
T ss_pred heEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 489999999865221 11 1111111 123579999999999999999999987763
No 252
>PLN00043 elongation factor 1-alpha; Provisional
Probab=96.57 E-value=0.0011 Score=52.10 Aligned_cols=47 Identities=17% Similarity=0.319 Sum_probs=32.2
Q ss_pred CCC-cEEEEecCCCCCCccc--------CHHHHHHHHhcC-----CcEEEeccCCCCChHH
Q 032955 25 ENI-PIVLCGNKVDVKNRQV--------KAKQVTFHRKKN-----LQYYEISAKSNYNFEK 71 (130)
Q Consensus 25 ~~~-piilv~NK~Dl~~~~v--------~~~~~~~~~~~~-----~~~~e~Sak~~~~v~~ 71 (130)
.++ ++|++.||+|+..... ..+...++.+.| ++|+.+||++|.|+.+
T Consensus 143 ~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 143 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred cCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 367 4788999999862111 122345566655 5699999999999853
No 253
>PRK12736 elongation factor Tu; Reviewed
Probab=96.57 E-value=0.0093 Score=46.05 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=35.8
Q ss_pred CCc-EEEEecCCCCCC-cccC----HHHHHHHHhcC-----CcEEEeccCCCC--------ChHHHHHHHHHHHh
Q 032955 26 NIP-IVLCGNKVDVKN-RQVK----AKQVTFHRKKN-----LQYYEISAKSNY--------NFEKPFLYLARKLA 81 (130)
Q Consensus 26 ~~p-iilv~NK~Dl~~-~~v~----~~~~~~~~~~~-----~~~~e~Sak~~~--------~v~~lf~~l~~~i~ 81 (130)
++| +|+|.||+|+.+ .... .+...++...+ .+++.+||++|. ++..+++.|...+.
T Consensus 127 g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 127 GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 677 678999999864 1111 12233444443 579999999983 46677766665543
No 254
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=96.50 E-value=0.016 Score=40.50 Aligned_cols=44 Identities=20% Similarity=0.176 Sum_probs=28.8
Q ss_pred CCc-EEEEecCCCCCC-ccc----CHHHHHHHHhcC-----CcEEEeccCCCCCh
Q 032955 26 NIP-IVLCGNKVDVKN-RQV----KAKQVTFHRKKN-----LQYYEISAKSNYNF 69 (130)
Q Consensus 26 ~~p-iilv~NK~Dl~~-~~v----~~~~~~~~~~~~-----~~~~e~Sak~~~~v 69 (130)
++| +|+|.||+|+.. ... ..+...+....+ .+++.+||++|.|+
T Consensus 117 ~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 117 GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 566 789999999853 111 112233444433 57999999999985
No 255
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=96.50 E-value=0.011 Score=47.02 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=46.9
Q ss_pred HHHHHHHHhCCCCcEEEEecCCCCCC-cccCHHHH----HHHHhcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955 15 TWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV----TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 15 ~~~~~~~~~~~~~piilv~NK~Dl~~-~~v~~~~~----~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
+.++.++-...+.|.|+|.||+|+.. ..++.+-+ ......+++++++|+.+..||-++....+..++
T Consensus 270 kLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 270 KLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALL 341 (620)
T ss_pred HHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHH
Confidence 34444555557999999999999865 33343322 333444588999999999999988877666544
No 256
>COG1160 Predicted GTPases [General function prediction only]
Probab=96.49 E-value=0.021 Score=44.69 Aligned_cols=57 Identities=18% Similarity=0.112 Sum_probs=39.7
Q ss_pred CCCcEEEEecCCCCCCc-ccCHH-H-HHHH---HhcC-CcEEEeccCCCCChHHHHHHHHHHHh
Q 032955 25 ENIPIVLCGNKVDVKNR-QVKAK-Q-VTFH---RKKN-LQYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~-~v~~~-~-~~~~---~~~~-~~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
.+.++|+|.||-|+.+. ....+ . ..+- ...+ .+.+.+||++|.|+..+|+.+.....
T Consensus 288 ~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 288 AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence 48899999999998653 12211 1 1222 2222 57899999999999999998876543
No 257
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=96.49 E-value=0.0063 Score=46.06 Aligned_cols=57 Identities=18% Similarity=0.306 Sum_probs=45.3
Q ss_pred CCcEEEEecCCCCCC-----cc-----c---CHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955 26 NIPIVLCGNKVDVKN-----RQ-----V---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 26 ~~piilv~NK~Dl~~-----~~-----v---~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
++|+++|.+|+|... .. + ....+.||=++|...|.+|+|+..|++-+..+|+..+..
T Consensus 222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYG 291 (473)
T ss_pred CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcC
Confidence 689999999999721 11 1 122456787889999999999999999999999987765
No 258
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.40 E-value=0.0067 Score=34.15 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=22.5
Q ss_pred eecCcH--HHHHhHHHHHHHHHHhCCCCcEEEEecCCC
Q 032955 2 FDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVD 37 (130)
Q Consensus 2 ~d~~~~--~s~~~~~~~~~~~~~~~~~~piilv~NK~D 37 (130)
+|++.. .|.+.--..+++++...++.|+++|.||+|
T Consensus 21 ~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 21 IDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp E-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred EcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 455543 356666667777887778999999999998
No 259
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.37 E-value=0.048 Score=40.52 Aligned_cols=58 Identities=16% Similarity=0.325 Sum_probs=40.2
Q ss_pred CCCcEEEEecCCCCCCcccCH------HHH----H---------HH-------Hh--cCCcEEEeccCCCCChHHHHHHH
Q 032955 25 ENIPIVLCGNKVDVKNRQVKA------KQV----T---------FH-------RK--KNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~------~~~----~---------~~-------~~--~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
...|.|+|.||+|+.+..+.. +.. . +. .+ .++..+.+|+.+|.|.+++|..+
T Consensus 180 tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av 259 (366)
T KOG1532|consen 180 TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAV 259 (366)
T ss_pred ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHH
Confidence 589999999999987633210 100 0 00 01 23568999999999999999988
Q ss_pred HHHHhc
Q 032955 77 ARKLAG 82 (130)
Q Consensus 77 ~~~i~~ 82 (130)
...+-+
T Consensus 260 ~~~vdE 265 (366)
T KOG1532|consen 260 DESVDE 265 (366)
T ss_pred HHHHHH
Confidence 876654
No 260
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=96.32 E-value=0.012 Score=44.25 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=23.4
Q ss_pred EEEeccCCCCChHHHHHHHHHHHhcC
Q 032955 58 YYEISAKSNYNFEKPFLYLARKLAGD 83 (130)
Q Consensus 58 ~~e~Sak~~~~v~~lf~~l~~~i~~~ 83 (130)
+|.+||++|.||+++.++|+..+...
T Consensus 248 vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 248 VFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred EEEEecccccCHHHHHHHHHhcCCCC
Confidence 89999999999999999999887543
No 261
>COG1084 Predicted GTPase [General function prediction only]
Probab=96.09 E-value=0.022 Score=42.90 Aligned_cols=80 Identities=15% Similarity=0.234 Sum_probs=51.3
Q ss_pred eecCcH--HHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcc-cCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955 2 FDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 2 ~d~~~~--~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
||.+.. -+.+.-.+.+++++.... .|+++|.||+|+.+.. ............+.....+++..+.+++.+...+..
T Consensus 255 ~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~ 333 (346)
T COG1084 255 FDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRK 333 (346)
T ss_pred EcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccchhHHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHH
Confidence 455432 244555556666766554 8999999999986422 222122233333455788899999999988888877
Q ss_pred HHhc
Q 032955 79 KLAG 82 (130)
Q Consensus 79 ~i~~ 82 (130)
..++
T Consensus 334 ~a~~ 337 (346)
T COG1084 334 TALE 337 (346)
T ss_pred Hhhc
Confidence 6554
No 262
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=96.07 E-value=0.035 Score=41.91 Aligned_cols=50 Identities=24% Similarity=0.212 Sum_probs=37.7
Q ss_pred CCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955 26 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
-+|.+.|.||+|+.. ......+.+.. .++.+||+++.|++++.+.|-+.+
T Consensus 239 Y~p~l~v~NKiD~~~---~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 239 YKPALYVVNKIDLPG---LEELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred eeeeEEEEecccccC---HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 579999999999864 11223333322 789999999999999999888765
No 263
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=96.02 E-value=0.027 Score=43.46 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=27.4
Q ss_pred CCcEE-EEecCCCCCCc-ccC----HHHHHHHHhcC-----CcEEEeccCCCC
Q 032955 26 NIPIV-LCGNKVDVKNR-QVK----AKQVTFHRKKN-----LQYYEISAKSNY 67 (130)
Q Consensus 26 ~~pii-lv~NK~Dl~~~-~v~----~~~~~~~~~~~-----~~~~e~Sak~~~ 67 (130)
++|.+ +|.||+|+.+. ... .+...++...+ ++++.+||++|.
T Consensus 127 gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 127 GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 67755 68999998642 111 12334555544 689999999885
No 264
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.00 E-value=0.011 Score=44.66 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=43.3
Q ss_pred CCcEEEEecCCCCCCcccC---H-HHHHHHHh---cCCcEEEeccCCCCChHHHHHHHHHHHhcCCCC
Q 032955 26 NIPIVLCGNKVDVKNRQVK---A-KQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL 86 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~~v~---~-~~~~~~~~---~~~~~~e~Sak~~~~v~~lf~~l~~~i~~~~~~ 86 (130)
=..+|+|.||+||..+.-. . +..+|.+- -+.+++.+||.-+.||+.+++.|.+.|..-...
T Consensus 140 ik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd 207 (415)
T COG5257 140 IKNIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERD 207 (415)
T ss_pred cceEEEEecccceecHHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccC
Confidence 4578999999999752211 1 12233321 246899999999999999999999998764443
No 265
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=95.94 E-value=0.04 Score=38.31 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=45.9
Q ss_pred HHhHH-HHHHHHHHhCCCCcEEEEecCCCCCC--ccc------CH-----HHHHHH----HhcC---CcEEEeccC--CC
Q 032955 10 YKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN--RQV------KA-----KQVTFH----RKKN---LQYYEISAK--SN 66 (130)
Q Consensus 10 ~~~~~-~~~~~~~~~~~~~piilv~NK~Dl~~--~~v------~~-----~~~~~~----~~~~---~~~~e~Sak--~~ 66 (130)
|.... .|++.+... +.|+++|+||+|+.. ... .. +....+ ...+ .++|-+|+. .+
T Consensus 92 ~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~ 169 (197)
T cd04104 92 FSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSD 169 (197)
T ss_pred CCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhh
Confidence 44444 356655553 689999999999842 110 01 111111 1212 358999998 67
Q ss_pred CChHHHHHHHHHHHhcCC
Q 032955 67 YNFEKPFLYLARKLAGDP 84 (130)
Q Consensus 67 ~~v~~lf~~l~~~i~~~~ 84 (130)
+++..+.+.+...+....
T Consensus 170 ~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 170 YDFPKLRETLLKDLPAHK 187 (197)
T ss_pred cChHHHHHHHHHHhhHHH
Confidence 999999999998887543
No 266
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=95.94 E-value=0.03 Score=42.13 Aligned_cols=60 Identities=18% Similarity=0.268 Sum_probs=42.1
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHHHhc-CCcEEEeccCCCCChHHHHH-HHHHHHhcCCCC
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFL-YLARKLAGDPNL 86 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~-~~~~~e~Sak~~~~v~~lf~-~l~~~i~~~~~~ 86 (130)
...|+|+|+||+|+.... .....+.... ...++.+||+.+.+++++.+ .+...+......
T Consensus 213 t~KPvI~VlNK~Dl~~~~--~~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f 274 (318)
T cd01899 213 RSKPMVIAANKADIPDAE--NNISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDF 274 (318)
T ss_pred cCCcEEEEEEHHHccChH--HHHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCc
Confidence 368999999999975311 1111222222 45699999999999999997 588888766543
No 267
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=95.92 E-value=0.019 Score=40.37 Aligned_cols=36 Identities=33% Similarity=0.386 Sum_probs=22.4
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCC
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 39 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 39 (130)
|||+++..++.. ..|+..... .+.|+++|+||+|+.
T Consensus 101 VvD~~~~~~~~~-~~~~~~~~~--~~~p~iiviNK~D~~ 136 (213)
T cd04167 101 VVDVVEGVTSNT-ERLIRHAIL--EGLPIVLVINKIDRL 136 (213)
T ss_pred EEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECcccC
Confidence 467765544432 334443332 368999999999974
No 268
>PRK12740 elongation factor G; Reviewed
Probab=95.91 E-value=0.032 Score=45.91 Aligned_cols=27 Identities=15% Similarity=0.064 Sum_probs=23.3
Q ss_pred CcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955 56 LQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 56 ~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
+++|..||++|.|+..+++.++..+..
T Consensus 237 ~Pv~~gSA~~~~Gv~~LLd~i~~~lPs 263 (668)
T PRK12740 237 VPVFCGSALKNKGVQRLLDAVVDYLPS 263 (668)
T ss_pred EEEEeccccCCccHHHHHHHHHHHCCC
Confidence 457889999999999999999887754
No 269
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=95.88 E-value=0.022 Score=44.22 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=30.2
Q ss_pred CCcEEEEecCCCCCCcc---cC---HHHHHHHHhcC---CcEEEeccCCCCChHHH
Q 032955 26 NIPIVLCGNKVDVKNRQ---VK---AKQVTFHRKKN---LQYYEISAKSNYNFEKP 72 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~~---v~---~~~~~~~~~~~---~~~~e~Sak~~~~v~~l 72 (130)
..+++++.||+|+.+.. +. .+...+....+ .+++.+||++|.|+++.
T Consensus 133 ~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 133 IRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred CCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 34688999999986411 10 11122333333 46999999999999863
No 270
>PRK12735 elongation factor Tu; Reviewed
Probab=95.83 E-value=0.029 Score=43.33 Aligned_cols=56 Identities=13% Similarity=0.104 Sum_probs=34.4
Q ss_pred CCCcEE-EEecCCCCCCcc-c----CHHHHHHHHhcC-----CcEEEeccCCCC----------ChHHHHHHHHHHH
Q 032955 25 ENIPIV-LCGNKVDVKNRQ-V----KAKQVTFHRKKN-----LQYYEISAKSNY----------NFEKPFLYLARKL 80 (130)
Q Consensus 25 ~~~pii-lv~NK~Dl~~~~-v----~~~~~~~~~~~~-----~~~~e~Sak~~~----------~v~~lf~~l~~~i 80 (130)
.++|.+ ++.||+|+.+.. . ..+...++...+ ++++.+||++|. ++..+++.|...+
T Consensus 126 ~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 126 VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 367855 579999986421 1 112234444433 679999999995 4556666555543
No 271
>PRK13351 elongation factor G; Reviewed
Probab=95.73 E-value=0.046 Score=45.12 Aligned_cols=27 Identities=19% Similarity=0.001 Sum_probs=23.2
Q ss_pred CcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955 56 LQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 56 ~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
+|+|..||++|.||..|++.++..+..
T Consensus 253 ~PV~~gSA~~~~Gv~~LLd~I~~~lPs 279 (687)
T PRK13351 253 VPVLFGSALKNIGIEPLLDAVVDYLPS 279 (687)
T ss_pred EEEEecccCcCccHHHHHHHHHHHCCC
Confidence 457788999999999999999988754
No 272
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=95.70 E-value=0.079 Score=38.13 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=18.6
Q ss_pred CcEEEeccCCCCChHHHHHHHHHHH
Q 032955 56 LQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 56 ~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
+|+|..||.++.||..+++.+.+.+
T Consensus 210 ~Pv~~gsa~~~~Gv~~ll~~~~~~~ 234 (237)
T cd04168 210 FPVYHGSALKGIGIEELLEGITKLF 234 (237)
T ss_pred EEEEEccccCCcCHHHHHHHHHHhc
Confidence 4677778888888888877777655
No 273
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.50 E-value=0.023 Score=38.94 Aligned_cols=78 Identities=15% Similarity=0.267 Sum_probs=50.1
Q ss_pred eecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHHHH------HHHHh------cC-----CcEEEec
Q 032955 2 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV------TFHRK------KN-----LQYYEIS 62 (130)
Q Consensus 2 ~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~~~------~~~~~------~~-----~~~~e~S 62 (130)
+|+-+.+.|.....-++.+.... .++|+++.|||+|.+......+.. .++.. .+ +..|.||
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcs 174 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCS 174 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEE
Confidence 56777777777766555544432 689999999999987532111111 11111 01 3478899
Q ss_pred cCCCCChHHHHHHHHHH
Q 032955 63 AKSNYNFEKPFLYLARK 79 (130)
Q Consensus 63 ak~~~~v~~lf~~l~~~ 79 (130)
...+.|.-+.|.++...
T Consensus 175 i~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 175 IVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEccCccceeeeehhhh
Confidence 88888888888877654
No 274
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=95.40 E-value=0.02 Score=45.36 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=30.2
Q ss_pred CcEEEEecCCCCCC-cc--cCH---HHHHHHHhc----CCcEEEeccCCCCChHHH
Q 032955 27 IPIVLCGNKVDVKN-RQ--VKA---KQVTFHRKK----NLQYYEISAKSNYNFEKP 72 (130)
Q Consensus 27 ~piilv~NK~Dl~~-~~--v~~---~~~~~~~~~----~~~~~e~Sak~~~~v~~l 72 (130)
.++|++.||+|+.+ .. +.. ....+.... ..+++.+||++|.|+.++
T Consensus 161 ~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 161 KHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred CceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 47899999999864 11 111 111223333 367999999999999865
No 275
>COG0218 Predicted GTPase [General function prediction only]
Probab=95.38 E-value=0.073 Score=37.45 Aligned_cols=57 Identities=11% Similarity=0.050 Sum_probs=37.8
Q ss_pred CCCcEEEEecCCCCCCc-ccCHHHHHHHHhc----CCc--EEEeccCCCCChHHHHHHHHHHHh
Q 032955 25 ENIPIVLCGNKVDVKNR-QVKAKQVTFHRKK----NLQ--YYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~-~v~~~~~~~~~~~----~~~--~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
.++|+++|.||+|-..+ .........+... ... ++.+|+.++.|++++...|...+.
T Consensus 134 ~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 134 LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 48999999999996542 2211112222222 222 778899999999999988887664
No 276
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=95.37 E-value=0.049 Score=43.18 Aligned_cols=58 Identities=28% Similarity=0.289 Sum_probs=44.2
Q ss_pred CCcEEEEecCCCCCC-----cccCH--------HHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHhcC
Q 032955 26 NIPIVLCGNKVDVKN-----RQVKA--------KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 83 (130)
Q Consensus 26 ~~piilv~NK~Dl~~-----~~v~~--------~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~~ 83 (130)
++|+++|.+|+|... ..... ..+.+|-.+|...|.||++...|++.++.+|...+...
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~ 266 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGF 266 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccC
Confidence 589999999999532 11111 13456677899999999999999999999988887663
No 277
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=95.11 E-value=0.058 Score=44.17 Aligned_cols=46 Identities=26% Similarity=0.289 Sum_probs=30.1
Q ss_pred CCcEEEEecCCCCCC--cc-cC---HHHHHHHHhcC---CcEEEeccCCCCChHH
Q 032955 26 NIPIVLCGNKVDVKN--RQ-VK---AKQVTFHRKKN---LQYYEISAKSNYNFEK 71 (130)
Q Consensus 26 ~~piilv~NK~Dl~~--~~-v~---~~~~~~~~~~~---~~~~e~Sak~~~~v~~ 71 (130)
..++|+|.||+|+.+ .. .. .+...+....+ .+++.+||++|.|+.+
T Consensus 157 ~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 157 IRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred CCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 357889999999863 11 11 11122334444 3589999999999874
No 278
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=94.80 E-value=0.17 Score=40.78 Aligned_cols=27 Identities=11% Similarity=0.007 Sum_probs=23.7
Q ss_pred CcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955 56 LQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 56 ~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
+|+|..||.+|.||..+++.++..++.
T Consensus 249 ~PV~~GSA~~n~Gv~~LLd~i~~~~P~ 275 (526)
T PRK00741 249 TPVFFGSALNNFGVQEFLDAFVEWAPA 275 (526)
T ss_pred EEEEEeecccCcCHHHHHHHHHHHCCC
Confidence 468899999999999999999998864
No 279
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.76 E-value=0.044 Score=40.12 Aligned_cols=53 Identities=11% Similarity=0.057 Sum_probs=31.6
Q ss_pred cEEEEecCCCCCC-cccCHH---HHHHHH----hcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955 28 PIVLCGNKVDVKN-RQVKAK---QVTFHR----KKNLQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 28 piilv~NK~Dl~~-~~v~~~---~~~~~~----~~~~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
.=++|.||+|... ...-.+ ...+.. .|..+++.|||.++.||+++++.|.+.-
T Consensus 169 aDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 169 ADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp -SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4488999999643 111111 111211 1335799999999999999999888743
No 280
>CHL00071 tufA elongation factor Tu
Probab=94.53 E-value=0.15 Score=39.68 Aligned_cols=45 Identities=20% Similarity=0.135 Sum_probs=28.9
Q ss_pred CCCc-EEEEecCCCCCCcc-cC----HHHHHHHHhcC-----CcEEEeccCCCCCh
Q 032955 25 ENIP-IVLCGNKVDVKNRQ-VK----AKQVTFHRKKN-----LQYYEISAKSNYNF 69 (130)
Q Consensus 25 ~~~p-iilv~NK~Dl~~~~-v~----~~~~~~~~~~~-----~~~~e~Sak~~~~v 69 (130)
.++| +|++.||.|+.+.. .. .+...+....+ .+++.+||.+|.|+
T Consensus 126 ~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 126 VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence 3678 77899999986521 11 12233444433 57999999999753
No 281
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.29 E-value=0.058 Score=38.92 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=31.8
Q ss_pred CCcEEEEecCCCCCCcccCH--------------------H-HHHHH---HhcC-C-cEEEeccCCCCChHHHHHHHHHH
Q 032955 26 NIPIVLCGNKVDVKNRQVKA--------------------K-QVTFH---RKKN-L-QYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~~v~~--------------------~-~~~~~---~~~~-~-~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
+.|.|.|.||+|+.+..... . ....+ .+++ . .++.+|++++.|+.+++..+-+.
T Consensus 156 ~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 156 ELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp TSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred CCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 89999999999996511000 0 00111 2233 3 69999999999999999876554
Q ss_pred H
Q 032955 80 L 80 (130)
Q Consensus 80 i 80 (130)
+
T Consensus 236 ~ 236 (238)
T PF03029_consen 236 N 236 (238)
T ss_dssp H
T ss_pred h
Confidence 3
No 282
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.21 E-value=0.079 Score=39.65 Aligned_cols=56 Identities=13% Similarity=0.022 Sum_probs=36.6
Q ss_pred CcEEEEecCCCCCCcccC-HH---HHHHH------HhcCCcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955 27 IPIVLCGNKVDVKNRQVK-AK---QVTFH------RKKNLQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 27 ~piilv~NK~Dl~~~~v~-~~---~~~~~------~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
+-=++|.||.|..+-... .+ +..+. .-|..+++.|||.+|+||+++++.+......
T Consensus 190 iaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 190 IADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred hhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 344889999996541110 01 11111 1234679999999999999999988875543
No 283
>PRK09602 translation-associated GTPase; Reviewed
Probab=94.04 E-value=0.13 Score=40.01 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=39.6
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHH-HHHHHHHHHhcCC
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK-PFLYLARKLAGDP 84 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~-lf~~l~~~i~~~~ 84 (130)
...|+++|.||+|+.... .....+....+..++.+||+.+.++.+ +...+++.+...+
T Consensus 216 t~KPvI~VlNK~D~~~~~--~~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p 274 (396)
T PRK09602 216 ISKPMVIAANKADLPPAE--ENIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDS 274 (396)
T ss_pred cCCCEEEEEEchhcccch--HHHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCC
Confidence 368999999999974211 111222222235689999999999998 7777777776554
No 284
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=93.87 E-value=0.083 Score=42.65 Aligned_cols=82 Identities=21% Similarity=0.447 Sum_probs=58.9
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh--CCCCcEEEEecCCCCCC---cccC-HHHHHHHHh-cCCcEEEeccCCCCChHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN---RQVK-AKQVTFHRK-KNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~--~~~~piilv~NK~Dl~~---~~v~-~~~~~~~~~-~~~~~~e~Sak~~~~v~~lf 73 (130)
||.+.+..+|..+..+...+..+ ...+|+++||++.-+.. +.+. ..+..++.. ..+.||+++|.+|.++..+|
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf 181 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF 181 (749)
T ss_pred EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence 56777888899888776665543 35889999999875432 2222 234444444 45789999999999999999
Q ss_pred HHHHHHHhc
Q 032955 74 LYLARKLAG 82 (130)
Q Consensus 74 ~~l~~~i~~ 82 (130)
..++..+..
T Consensus 182 ~~~~~k~i~ 190 (749)
T KOG0705|consen 182 QEVAQKIVQ 190 (749)
T ss_pred HHHHHHHHH
Confidence 999876543
No 285
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=93.71 E-value=0.81 Score=37.02 Aligned_cols=71 Identities=11% Similarity=0.051 Sum_probs=49.6
Q ss_pred HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEec--cCCCCChHHHHHHHHHHHh
Q 032955 9 TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS--AKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 9 s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~S--ak~~~~v~~lf~~l~~~i~ 81 (130)
.|.++.+.++.+++ -++|++++.||.|...........++|.+.|+++..+. ++-|.|--++-..+++.+.
T Consensus 357 Gl~NL~RHIenvr~--FGvPvVVAINKFd~DTe~Ei~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~ 429 (557)
T PRK13505 357 GFANLERHIENIRK--FGVPVVVAINKFVTDTDAEIAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIE 429 (557)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHh
Confidence 46666666666665 48999999999998543222335689999998876444 4666676667666776665
No 286
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=93.50 E-value=0.23 Score=38.94 Aligned_cols=57 Identities=18% Similarity=0.099 Sum_probs=39.4
Q ss_pred CCCcEEEEecCCCCCCc-ccCHHHHHHHHhc---CCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955 25 ENIPIVLCGNKVDVKNR-QVKAKQVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~-~v~~~~~~~~~~~---~~~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
.-...++|.+|+|..+. .+.....+..... ..++|.+|+++|.||+++...|.....
T Consensus 102 gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 102 GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred CCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 34556999999998752 2211122222222 356899999999999999999998874
No 287
>PRK00049 elongation factor Tu; Reviewed
Probab=93.38 E-value=0.36 Score=37.39 Aligned_cols=55 Identities=13% Similarity=0.089 Sum_probs=32.6
Q ss_pred CCCcEE-EEecCCCCCCc-cc----CHHHHHHHHhc-----CCcEEEeccCCCC----------ChHHHHHHHHHH
Q 032955 25 ENIPIV-LCGNKVDVKNR-QV----KAKQVTFHRKK-----NLQYYEISAKSNY----------NFEKPFLYLARK 79 (130)
Q Consensus 25 ~~~pii-lv~NK~Dl~~~-~v----~~~~~~~~~~~-----~~~~~e~Sak~~~----------~v~~lf~~l~~~ 79 (130)
.++|.+ ++.||+|+.+. .. ..+...+.... +.+++.+||++|. ++..+++.|...
T Consensus 126 ~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 126 VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 367876 58999998641 11 11122333332 3578999999975 345555555543
No 288
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=93.37 E-value=0.081 Score=35.52 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=51.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcc-cCHHHHH----HHHhcCCcEEEeccCCCCChHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VKAKQVT----FHRKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~-v~~~~~~----~~~~~~~~~~e~Sak~~~~v~~lf 73 (130)
|.|-++...|+.+..-+.++.... ..+|+.+..||.|+.-.. ++..+.. .........-++||.++.|+.+-.
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~ 171 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGS 171 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcc
Confidence 457777888998876555555432 589999999999975321 1111111 111222456799999999999888
Q ss_pred HHHHHH
Q 032955 74 LYLARK 79 (130)
Q Consensus 74 ~~l~~~ 79 (130)
.++...
T Consensus 172 ~wv~sn 177 (185)
T KOG0074|consen 172 DWVQSN 177 (185)
T ss_pred hhhhcC
Confidence 877653
No 289
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=93.26 E-value=0.097 Score=37.38 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=21.9
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCC
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 39 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 39 (130)
|||++...+......|.. ... .++|+++|+||+|+.
T Consensus 103 VvD~~~g~~~~t~~~l~~-~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 103 VVDAVEGVCVQTETVLRQ-ALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred EEECCCCCCHHHHHHHHH-HHH--cCCCEEEEEECCCcc
Confidence 567776544433222222 222 478999999999975
No 290
>PLN03126 Elongation factor Tu; Provisional
Probab=93.15 E-value=0.23 Score=39.56 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=28.7
Q ss_pred CCCc-EEEEecCCCCCCcc-c----CHHHHHHHHhc-----CCcEEEeccCCCCCh
Q 032955 25 ENIP-IVLCGNKVDVKNRQ-V----KAKQVTFHRKK-----NLQYYEISAKSNYNF 69 (130)
Q Consensus 25 ~~~p-iilv~NK~Dl~~~~-v----~~~~~~~~~~~-----~~~~~e~Sak~~~~v 69 (130)
.++| +|++.||+|+.+.. . ..+...+.... +.+++.+||.+|.++
T Consensus 195 ~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 195 VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccc
Confidence 3677 78899999986411 1 11222344443 467999999998654
No 291
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=93.15 E-value=0.47 Score=34.21 Aligned_cols=80 Identities=14% Similarity=0.165 Sum_probs=50.5
Q ss_pred CeecCcHH---HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC---cccC-----HHHHHHHHhcC---CcEEEeccCCC
Q 032955 1 MFDVTARL---TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN---RQVK-----AKQVTFHRKKN---LQYYEISAKSN 66 (130)
Q Consensus 1 V~d~~~~~---s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~v~-----~~~~~~~~~~~---~~~~e~Sak~~ 66 (130)
|+|+.+.+ .+..+...+..+.++++++.+.+...|.|+.. +... ....+.+...+ +.++.||.-+
T Consensus 83 V~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D- 161 (232)
T PF04670_consen 83 VFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD- 161 (232)
T ss_dssp EEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-
T ss_pred EEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-
Confidence 57776333 45555556666777789999999999999854 1111 11223344455 6799999888
Q ss_pred CChHHHHHHHHHHHh
Q 032955 67 YNFEKPFLYLARKLA 81 (130)
Q Consensus 67 ~~v~~lf~~l~~~i~ 81 (130)
..+.++|..++..+.
T Consensus 162 ~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 162 ESLYEAWSKIVQKLI 176 (232)
T ss_dssp THHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHc
Confidence 488889988888665
No 292
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=92.55 E-value=0.14 Score=39.31 Aligned_cols=45 Identities=27% Similarity=0.327 Sum_probs=31.9
Q ss_pred CCcEEEEecCCCCCC--ccc-C---HHHHHHHHhcCC---cEEEeccCCCCChH
Q 032955 26 NIPIVLCGNKVDVKN--RQV-K---AKQVTFHRKKNL---QYYEISAKSNYNFE 70 (130)
Q Consensus 26 ~~piilv~NK~Dl~~--~~v-~---~~~~~~~~~~~~---~~~e~Sak~~~~v~ 70 (130)
=..+|+..||.||.+ +.+ . .+-..|+.++++ .++.+||..|.||-
T Consensus 139 IrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 139 IRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred CcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 346889999999986 211 1 112356777774 49999999999874
No 293
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=92.45 E-value=0.52 Score=34.57 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=14.0
Q ss_pred CCCcEEEEecCCCCCC
Q 032955 25 ENIPIVLCGNKVDVKN 40 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~ 40 (130)
.++|+++++||+|+..
T Consensus 122 ~~~P~iivvNK~D~~~ 137 (267)
T cd04169 122 RGIPIITFINKLDREG 137 (267)
T ss_pred cCCCEEEEEECCccCC
Confidence 4789999999999865
No 294
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=92.23 E-value=0.25 Score=38.96 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=29.1
Q ss_pred CCc-EEEEecCCCCCC-----ccc---CHHHHHHHHhcC-----CcEEEeccCCCCChHH
Q 032955 26 NIP-IVLCGNKVDVKN-----RQV---KAKQVTFHRKKN-----LQYYEISAKSNYNFEK 71 (130)
Q Consensus 26 ~~p-iilv~NK~Dl~~-----~~v---~~~~~~~~~~~~-----~~~~e~Sak~~~~v~~ 71 (130)
++| +|++.||.|... ..+ ..+...++...+ ++++.+||.+|.|+.+
T Consensus 144 gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 144 GVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred CCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 666 679999999532 111 112223333333 5799999999999864
No 295
>COG1161 Predicted GTPases [General function prediction only]
Probab=91.66 E-value=0.35 Score=36.45 Aligned_cols=49 Identities=27% Similarity=0.294 Sum_probs=34.4
Q ss_pred CCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHH
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf 73 (130)
.+.+.++|+||+||....+... ...+.++.+...+.++++.+.+...+.
T Consensus 60 ~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~~~~~~~i~ 109 (322)
T COG1161 60 KEKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQGGKKIR 109 (322)
T ss_pred ccCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeecccCccchH
Confidence 3566699999999976444322 444555556777888888888877666
No 296
>PRK12739 elongation factor G; Reviewed
Probab=91.56 E-value=1 Score=37.51 Aligned_cols=26 Identities=15% Similarity=-0.079 Sum_probs=20.2
Q ss_pred cEEEeccCCCCChHHHHHHHHHHHhc
Q 032955 57 QYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 57 ~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
+++..||.++.|+..+++.|+..+..
T Consensus 254 Pv~~gSa~~~~Gv~~LLd~I~~~lPs 279 (691)
T PRK12739 254 PVLCGSAFKNKGVQPLLDAVVDYLPS 279 (691)
T ss_pred EEEeccccCCccHHHHHHHHHHHCCC
Confidence 56777888888888888888877653
No 297
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=91.50 E-value=0.16 Score=38.35 Aligned_cols=65 Identities=18% Similarity=0.218 Sum_probs=45.2
Q ss_pred CcEEEEecCCCCCCcccCH---H-HHHHHHh---cCCcEEEeccCCCCChHHHHHHHHHHHhcCCCCCCcCC
Q 032955 27 IPIVLCGNKVDVKNRQVKA---K-QVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVES 91 (130)
Q Consensus 27 ~piilv~NK~Dl~~~~v~~---~-~~~~~~~---~~~~~~e~Sak~~~~v~~lf~~l~~~i~~~~~~~~~~~ 91 (130)
..++++.||+||-.+.... + ...|.+. -+.+++.+||.-++||+-+-+.++..+..-........
T Consensus 180 khiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~s~p 251 (466)
T KOG0466|consen 180 KHIIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFTSPP 251 (466)
T ss_pred ceEEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccCCCC
Confidence 4789999999986522211 1 2334332 24689999999999999999999998876554444333
No 298
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=91.47 E-value=0.73 Score=33.50 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=34.5
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCc--EEEeccCCCCChHHHHHHHHHHHh
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ--YYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~--~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
.++|+++|+||+|+...........+...++.. .+.+...+|.++..+.+.+.....
T Consensus 115 ~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~~~~~ 173 (268)
T cd04170 115 AGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGEGDDFKGVVDLLTEKAY 173 (268)
T ss_pred cCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccCCCceeEEEEcccCEEE
Confidence 478999999999986532222223343444543 355567788777666655544443
No 299
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=91.37 E-value=0.37 Score=33.01 Aligned_cols=16 Identities=38% Similarity=0.420 Sum_probs=13.9
Q ss_pred CCCcEEEEecCCCCCC
Q 032955 25 ENIPIVLCGNKVDVKN 40 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~ 40 (130)
.+.|+++|.||+|+.+
T Consensus 29 ~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 29 GNKKLVLVLNKIDLVP 44 (172)
T ss_pred CCCCEEEEEehhhcCC
Confidence 4689999999999964
No 300
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=91.28 E-value=1 Score=33.88 Aligned_cols=59 Identities=19% Similarity=0.130 Sum_probs=37.7
Q ss_pred CCCcEEEEecCCCCCCcc-----------------cCHH-HHHH-----HH---h--cCCcEEEeccCCCCChHHHHHHH
Q 032955 25 ENIPIVLCGNKVDVKNRQ-----------------VKAK-QVTF-----HR---K--KNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~-----------------v~~~-~~~~-----~~---~--~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
.++|++|++||.|+-.+. ...+ +..| .. . ..+..+.|+|.+-.++..+|..+
T Consensus 227 ~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v 306 (317)
T cd00066 227 ANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAV 306 (317)
T ss_pred cCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHH
Confidence 589999999999963211 0111 1211 11 1 12345678899899999999888
Q ss_pred HHHHhcC
Q 032955 77 ARKLAGD 83 (130)
Q Consensus 77 ~~~i~~~ 83 (130)
...|...
T Consensus 307 ~~~i~~~ 313 (317)
T cd00066 307 KDIILQN 313 (317)
T ss_pred HHHHHHH
Confidence 8877653
No 301
>PLN03127 Elongation factor Tu; Provisional
Probab=90.83 E-value=1.1 Score=35.29 Aligned_cols=56 Identities=20% Similarity=0.146 Sum_probs=31.7
Q ss_pred CCCc-EEEEecCCCCCCc-ccCH----HHHHHHHhc-----CCcEEEeccC---CCCC-------hHHHHHHHHHHH
Q 032955 25 ENIP-IVLCGNKVDVKNR-QVKA----KQVTFHRKK-----NLQYYEISAK---SNYN-------FEKPFLYLARKL 80 (130)
Q Consensus 25 ~~~p-iilv~NK~Dl~~~-~v~~----~~~~~~~~~-----~~~~~e~Sak---~~~~-------v~~lf~~l~~~i 80 (130)
.++| +|++.||+|+.+. .... +...+.... .++++.+||. +|.| +..+++.|...+
T Consensus 175 ~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 175 VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 3688 5789999998641 1111 111222222 2578888875 4544 566666665544
No 302
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.52 E-value=1.9 Score=30.97 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=19.3
Q ss_pred CcEEEeccCCCCChHHHHHHHHHH
Q 032955 56 LQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 56 ~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
..|.++|+++| +++++..|+.+.
T Consensus 215 V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 215 VTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred eEEeecccCcC-ChHHHHHHHHHh
Confidence 45889999999 999999988764
No 303
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.23 E-value=0.45 Score=35.06 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=53.9
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCC-------------------cc-------------------
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-------------------RQ------------------- 42 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-------------------~~------------------- 42 (130)
|||.+....+..+..|+....-++-. -++.+|||+|... |.
T Consensus 85 vfdlse~s~l~alqdwl~htdinsfd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegssll 163 (418)
T KOG4273|consen 85 VFDLSEKSGLDALQDWLPHTDINSFD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSSLL 163 (418)
T ss_pred EEeccchhhhHHHHhhccccccccch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccccc
Confidence 68999888999999998643221112 3456799998421 00
Q ss_pred cC--------HHHHHHHHhcCCcEEEeccCC------------CCChHHHHHHHHHHHhc
Q 032955 43 VK--------AKQVTFHRKKNLQYYEISAKS------------NYNFEKPFLYLARKLAG 82 (130)
Q Consensus 43 v~--------~~~~~~~~~~~~~~~e~Sak~------------~~~v~~lf~~l~~~i~~ 82 (130)
.+ ....+|+-++|+.|++.+|.. ..||+.+|..|-..+.-
T Consensus 164 gsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwp 223 (418)
T KOG4273|consen 164 GSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWP 223 (418)
T ss_pred ccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCc
Confidence 00 113468888999999999833 25899999888775543
No 304
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=89.92 E-value=0.48 Score=34.90 Aligned_cols=44 Identities=16% Similarity=0.298 Sum_probs=28.9
Q ss_pred HHHhCCCCcEEEEecCCCCCC-ccc---CHHHHHHHHhcCCcEEEecc
Q 032955 20 LCRVCENIPIVLCGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISA 63 (130)
Q Consensus 20 ~~~~~~~~piilv~NK~Dl~~-~~v---~~~~~~~~~~~~~~~~e~Sa 63 (130)
++.....+|+++|+||+|+.. ... .....+.+..+++.+|....
T Consensus 137 lk~l~~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~ 184 (276)
T cd01850 137 MKRLSKRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPE 184 (276)
T ss_pred HHHHhccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCC
Confidence 333335799999999999854 111 12244567778888887654
No 305
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=89.66 E-value=0.44 Score=38.21 Aligned_cols=39 Identities=28% Similarity=0.213 Sum_probs=26.8
Q ss_pred CCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCC
Q 032955 26 NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKS 65 (130)
Q Consensus 26 ~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~ 65 (130)
..-.+|+.||+||.. .++..+ ..|..+.+++++..||..
T Consensus 205 ~K~~~LLvNKaDLl~~~qr~aW-a~YF~~~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 205 SKANVLLVNKADLLPPEQRVAW-AEYFRQNNIPVVFFSALA 244 (562)
T ss_pred ccceEEEEehhhcCCHHHHHHH-HHHHHhcCceEEEEeccc
Confidence 567899999999965 222112 234556679998889876
No 306
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=89.38 E-value=0.98 Score=37.54 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=14.0
Q ss_pred CCCcEEEEecCCCCCC
Q 032955 25 ENIPIVLCGNKVDVKN 40 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~ 40 (130)
.++|+++|+||+|+..
T Consensus 126 ~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 126 YEVPRIAFVNKMDKTG 141 (689)
T ss_pred cCCCEEEEEECCCCCC
Confidence 4789999999999865
No 307
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=88.89 E-value=2.1 Score=32.59 Aligned_cols=27 Identities=11% Similarity=-0.046 Sum_probs=20.8
Q ss_pred CcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955 56 LQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 56 ~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
+..+.|+|.+-.++..+|..+...|.+
T Consensus 309 ~y~h~t~a~Dt~~~~~v~~~v~~~I~~ 335 (342)
T smart00275 309 IYHHFTCATDTRNIRVVFDAVKDIILQ 335 (342)
T ss_pred EEEEEeeecccHHHHHHHHHHHHHHHH
Confidence 345778888888899999887777654
No 308
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=88.32 E-value=1.5 Score=32.14 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=23.8
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHHHhcC---C-cEEEeccCCC
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN---L-QYYEISAKSN 66 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~---~-~~~e~Sak~~ 66 (130)
.++|++++.||+|+.+.........+...++ + .++.+|+..+
T Consensus 115 ~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pisa~~~ 160 (270)
T cd01886 115 YNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPIGEEDD 160 (270)
T ss_pred cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEeccccCCC
Confidence 4789999999999864221111122222233 2 2677777644
No 309
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=88.15 E-value=0.84 Score=31.69 Aligned_cols=39 Identities=21% Similarity=0.312 Sum_probs=22.7
Q ss_pred eecC-cHHHHHhHHHHHHHHHHh----CCCCcEEEEecCCCCCC
Q 032955 2 FDVT-ARLTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKN 40 (130)
Q Consensus 2 ~d~~-~~~s~~~~~~~~~~~~~~----~~~~piilv~NK~Dl~~ 40 (130)
.|.+ .+..+..+..++..+... ...+|++++.||.|+..
T Consensus 83 vDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 83 VDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 4443 344566666655554443 25899999999999864
No 310
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=87.73 E-value=3.3 Score=32.65 Aligned_cols=59 Identities=14% Similarity=0.058 Sum_probs=35.3
Q ss_pred HHhCCCCcEEEEecCCCCCCcccCH-HHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955 21 CRVCENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 21 ~~~~~~~piilv~NK~Dl~~~~v~~-~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
+...+...+|+|.||+||...-+.. +...+.+++..--|-.|.....|=..++..|...
T Consensus 239 kke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi~nsfGKgalI~llRQf 298 (572)
T KOG2423|consen 239 KKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASINNSFGKGALIQLLRQF 298 (572)
T ss_pred hhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhhcCccchhHHHHHHHHH
Confidence 3344688899999999996432222 2334455555446777766666655555433333
No 311
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=87.28 E-value=1.4 Score=34.53 Aligned_cols=48 Identities=10% Similarity=0.239 Sum_probs=31.6
Q ss_pred CCcEEEEecCCCCCCcccCHHHH----HH--------------------------HHhcCCcEEEeccCCCCChHHHH
Q 032955 26 NIPIVLCGNKVDVKNRQVKAKQV----TF--------------------------HRKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~~v~~~~~----~~--------------------------~~~~~~~~~e~Sak~~~~v~~lf 73 (130)
.+|+++|.+|+|+....+-.+.. .+ -.+.-+++|.+|.-+|.|++-+.
T Consensus 273 ~VPVfvVVTKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLk 350 (641)
T KOG0463|consen 273 HVPVFVVVTKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLK 350 (641)
T ss_pred cCcEEEEEEeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHH
Confidence 78999999999986422222211 11 12233689999999999987543
No 312
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=86.37 E-value=2 Score=34.43 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=39.1
Q ss_pred CCCcEEEEecCCCCCC-cc--cCHHHHHHH-------HhcCCcEEEeccCCCC----------ChHHHHHHHHHHHhc
Q 032955 25 ENIPIVLCGNKVDVKN-RQ--VKAKQVTFH-------RKKNLQYYEISAKSNY----------NFEKPFLYLARKLAG 82 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~-~~--v~~~~~~~~-------~~~~~~~~e~Sak~~~----------~v~~lf~~l~~~i~~ 82 (130)
.+.+-|+|.||+|.+. +. |-.+...+. .++.++++..||+.|. ++.-||+.|++.+..
T Consensus 119 ~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 119 LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 4677788999999876 22 111222222 3466899999998774 577788888777653
No 313
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=86.07 E-value=1.4 Score=33.28 Aligned_cols=56 Identities=13% Similarity=0.169 Sum_probs=31.9
Q ss_pred hCCCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCC--ChHHHHHHHHH
Q 032955 23 VCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNY--NFEKPFLYLAR 78 (130)
Q Consensus 23 ~~~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~--~v~~lf~~l~~ 78 (130)
..+..|-|+|.||+||.+...... .+.+..+....++..++.... ++..++..+..
T Consensus 70 ~~~~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~~~~~~c~~~~~~~v~~l~~il~~ 128 (335)
T KOG2485|consen 70 FLPPKPRIIVLNKMDLADPKEQKKIIQYLEWQNLESYIKLDCNKDCNKQVSPLLKILTI 128 (335)
T ss_pred hcCCCceEEEEecccccCchhhhHHHHHHHhhcccchhhhhhhhhhhhccccHHHHHHH
Confidence 335778899999999987433333 444444444444444443333 35555554443
No 314
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=84.91 E-value=4.1 Score=32.40 Aligned_cols=62 Identities=10% Similarity=0.065 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCC--CChHHHHHHHHH
Q 032955 14 PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSN--YNFEKPFLYLAR 78 (130)
Q Consensus 14 ~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~--~~v~~lf~~l~~ 78 (130)
.+|+.+++. -+.|+++|.||+|-.... ... ...+...++.+++.+|+..- ..|..++..+..
T Consensus 170 e~~i~eLk~--~~kPfiivlN~~dp~~~e-t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 170 ERVIEELKE--LNKPFIILLNSTHPYHPE-TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLY 234 (492)
T ss_pred HHHHHHHHh--cCCCEEEEEECcCCCCch-hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHh
Confidence 458888877 589999999999932211 222 23454567788777776433 345555554443
No 315
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=84.76 E-value=2.5 Score=28.77 Aligned_cols=31 Identities=23% Similarity=0.111 Sum_probs=21.5
Q ss_pred HHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955 48 VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 48 ~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
.......|++++.+|++++.|++++...+..
T Consensus 5 ~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~ 35 (161)
T PF03193_consen 5 LEQYEKLGYPVFFISAKTGEGIEELKELLKG 35 (161)
T ss_dssp HHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT
T ss_pred HHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC
Confidence 3455667888888888888888877765544
No 316
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=84.51 E-value=1.9 Score=33.07 Aligned_cols=74 Identities=19% Similarity=0.151 Sum_probs=43.6
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhC-C----CCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVC-E----NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY 75 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~-~----~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~ 75 (130)
|.|++.|.--.+...-+.-+.+.- + ...++=|.||+|.....++.+ +++ .+.+||++|.|.+++...
T Consensus 264 vvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E------~n~--~v~isaltgdgl~el~~a 335 (410)
T KOG0410|consen 264 VVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE------KNL--DVGISALTGDGLEELLKA 335 (410)
T ss_pred EeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc------cCC--ccccccccCccHHHHHHH
Confidence 467777754444444333333321 1 223567888888754332221 222 578999999999999887
Q ss_pred HHHHHhc
Q 032955 76 LARKLAG 82 (130)
Q Consensus 76 l~~~i~~ 82 (130)
+-..+..
T Consensus 336 ~~~kv~~ 342 (410)
T KOG0410|consen 336 EETKVAS 342 (410)
T ss_pred HHHHhhh
Confidence 7665543
No 317
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=83.96 E-value=2.2 Score=33.50 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=33.5
Q ss_pred CCcEEEEecCCCCCCcc----cCHHHHH----------------------HHHhcC---CcEEEeccCCCCChHHHHHHH
Q 032955 26 NIPIVLCGNKVDVKNRQ----VKAKQVT----------------------FHRKKN---LQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~~----v~~~~~~----------------------~~~~~~---~~~~e~Sak~~~~v~~lf~~l 76 (130)
..|+++|.+|+|+.... +-.+... .+-+.+ .|+|.+|+-||.|++-+. .+
T Consensus 255 ~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~-e~ 333 (527)
T COG5258 255 ELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLD-EF 333 (527)
T ss_pred cCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHH-HH
Confidence 78999999999986411 1111111 111222 579999999999986443 34
Q ss_pred HHHHh
Q 032955 77 ARKLA 81 (130)
Q Consensus 77 ~~~i~ 81 (130)
...+.
T Consensus 334 f~~Lp 338 (527)
T COG5258 334 FLLLP 338 (527)
T ss_pred HHhCC
Confidence 43333
No 318
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=83.51 E-value=1.5 Score=37.06 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=21.4
Q ss_pred cEEEeccCCCCChHHHHHHHHHHHh
Q 032955 57 QYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 57 ~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
..+.|||.+|.||.+|+..|+....
T Consensus 663 siVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 663 SIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred EeeecccccCCCcHHHHHHHHHHHH
Confidence 4678999999999999999887543
No 319
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=83.43 E-value=1.7 Score=33.99 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=30.7
Q ss_pred CCcEEEEecCCCCCC-cc-----cCHHHHHHHHhcC-----CcEEEeccCCCCChHHH
Q 032955 26 NIPIVLCGNKVDVKN-RQ-----VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKP 72 (130)
Q Consensus 26 ~~piilv~NK~Dl~~-~~-----v~~~~~~~~~~~~-----~~~~e~Sak~~~~v~~l 72 (130)
=-.+|++.||.|+.+ ++ +..+...+....| .+|+.+||..|.|+.+.
T Consensus 145 i~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 145 IKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred CceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 346889999999875 11 1112223444444 46999999999997654
No 320
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=81.96 E-value=3.3 Score=32.08 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=33.7
Q ss_pred CcEEEEecCCCCC-C--ccc--CHHHHHHHH---hc----CCcEEEeccCCC----CChHHHHHHHHHHHhc
Q 032955 27 IPIVLCGNKVDVK-N--RQV--KAKQVTFHR---KK----NLQYYEISAKSN----YNFEKPFLYLARKLAG 82 (130)
Q Consensus 27 ~piilv~NK~Dl~-~--~~v--~~~~~~~~~---~~----~~~~~e~Sak~~----~~v~~lf~~l~~~i~~ 82 (130)
...|+|.||+|+. + |.. +.......+ .. +.+.+++||+.| .+|.++.+.|...+..
T Consensus 123 ~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 123 KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 4567788888864 3 221 111112221 11 267999999999 6777777777666654
No 321
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=81.26 E-value=15 Score=25.21 Aligned_cols=66 Identities=11% Similarity=0.199 Sum_probs=44.7
Q ss_pred HhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHH
Q 032955 11 KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 11 ~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l 76 (130)
..+..|+.++++....-.+++|-|-.-...+.-...+..+.+.+|++++.-+++...+..++...+
T Consensus 62 ~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~~kKP~~~~~i~~~~ 127 (168)
T PF09419_consen 62 PEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHRAKKPGCFREILKYF 127 (168)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeCCCCCccHHHHHHHH
Confidence 456778888887644446888888764332221233567778899999988888777776666544
No 322
>KOG2484 consensus GTPase [General function prediction only]
Probab=81.14 E-value=5.6 Score=31.18 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=26.8
Q ss_pred CCCcEEEEecCCCCCCccc-CHHHHHHHHhcCCcEEEeccCCC
Q 032955 25 ENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNLQYYEISAKSN 66 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v-~~~~~~~~~~~~~~~~e~Sak~~ 66 (130)
++...|+|.||+||..+.+ ..+...+.+++..-.|.+|...+
T Consensus 176 gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~~~ 218 (435)
T KOG2484|consen 176 GNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQMQ 218 (435)
T ss_pred CCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeecccccc
Confidence 4688999999999976443 33344455555544566665443
No 323
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=80.63 E-value=2.1 Score=26.53 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=17.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCR 22 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~ 22 (130)
|||++++.||..+..|+..+..
T Consensus 80 v~D~s~~~s~~~~~~~~~~l~~ 101 (119)
T PF08477_consen 80 VYDLSDPESLEYLSQLLKWLKN 101 (119)
T ss_dssp EEECCGHHHHHHHHHHHHHHHH
T ss_pred EEcCCChHHHHHHHHHHHHHHH
Confidence 7999999999998776555543
No 324
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=80.49 E-value=2.1 Score=34.33 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=39.2
Q ss_pred CCcEEEEecCCCCCCc--ccCHHHHHHHHhcC---Cc-EEEeccCCCCChHHHHHHHHHHHhcCCC
Q 032955 26 NIPIVLCGNKVDVKNR--QVKAKQVTFHRKKN---LQ-YYEISAKSNYNFEKPFLYLARKLAGDPN 85 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~--~v~~~~~~~~~~~~---~~-~~e~Sak~~~~v~~lf~~l~~~i~~~~~ 85 (130)
..+++++.||+|+... ........+....+ ++ ..++|+++++|++.+...|...+...-.
T Consensus 389 ~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 389 KQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred ccceEEEechhhccCccccccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 4789999999998652 21111111222111 33 5669999999999999988887765443
No 325
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=80.17 E-value=3.3 Score=33.50 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=13.9
Q ss_pred CCCcEEEEecCCCCCC
Q 032955 25 ENIPIVLCGNKVDVKN 40 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~ 40 (130)
.++|+++++||+|+..
T Consensus 131 ~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 131 RDTPIFTFMNKLDRDI 146 (527)
T ss_pred cCCCEEEEEECccccC
Confidence 4789999999999864
No 326
>PRK00007 elongation factor G; Reviewed
Probab=77.56 E-value=6.1 Score=33.00 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=23.9
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHHHhcCC----cEEEeccCCC
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL----QYYEISAKSN 66 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~----~~~e~Sak~~ 66 (130)
.++|++++.||.|+.+.........+...++. ..+.+|+..+
T Consensus 126 ~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 126 YKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEEecCccCCc
Confidence 47899999999998753222112233333332 2456666655
No 327
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=73.69 E-value=45 Score=27.16 Aligned_cols=70 Identities=9% Similarity=0.042 Sum_probs=47.4
Q ss_pred HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEec--cCCCCChHHHHHHHHHHHh
Q 032955 9 TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEIS--AKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 9 s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~S--ak~~~~v~~lf~~l~~~i~ 81 (130)
-|.++.+.++.+++ -++|+|+..|+..-.... +.+ ..++|.+.|..+..+. ++-|.|-.++-..+++.+.
T Consensus 341 G~~NL~~Hi~n~~~--fg~p~VVaiN~F~~Dt~~-Ei~~v~~~~~~~g~~~~~~~~~~~GG~Ga~eLA~~Vi~a~e 413 (524)
T cd00477 341 GFANLRKHIENIKK--FGVPVVVAINKFSTDTDA-ELALVRKLAEEAGAFVAVSEHWAEGGKGAVELAEAVIEACE 413 (524)
T ss_pred HHHHHHHHHHHHHH--cCCCeEEEecCCCCCCHH-HHHHHHHHHHHcCCCEEEehhhhhhhhhHHHHHHHHHHHhc
Confidence 45666666666655 489999999999642211 112 4578888888766554 5777788888888877665
No 328
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=73.52 E-value=4.3 Score=33.19 Aligned_cols=48 Identities=23% Similarity=0.256 Sum_probs=31.4
Q ss_pred CCCcEEEEecCCCCCC-cc--cC---HHHHHHH-HhcC-----CcEEEeccCCCCChHHH
Q 032955 25 ENIPIVLCGNKVDVKN-RQ--VK---AKQVTFH-RKKN-----LQYYEISAKSNYNFEKP 72 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~-~~--v~---~~~~~~~-~~~~-----~~~~e~Sak~~~~v~~l 72 (130)
.-.-+|++.||.|+.+ .+ +. .....|. ...| +.|+.||+.+|+|+-..
T Consensus 314 gi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 314 GISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred CcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 3456889999999875 11 11 1122444 3334 46999999999997654
No 329
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=73.48 E-value=17 Score=24.35 Aligned_cols=49 Identities=10% Similarity=0.158 Sum_probs=31.0
Q ss_pred HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEE
Q 032955 9 TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60 (130)
Q Consensus 9 s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e 60 (130)
+...+..+.+.+.+ .+.++.+|.||+|...+ ...+..+++++.+++++.
T Consensus 128 ~~~~~~~~~~~l~~--~~~~~~vV~N~~~~~~~-~~~~~~~~~~~~~~~vl~ 176 (179)
T cd03110 128 GLHDLERAVELVRH--FGIPVGVVINKYDLNDE-IAEEIEDYCEEEGIPILG 176 (179)
T ss_pred cHHHHHHHHHHHHH--cCCCEEEEEeCCCCCcc-hHHHHHHHHHHcCCCeEE
Confidence 45555666655554 35778899999996432 223355677777877653
No 330
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=73.36 E-value=1.7 Score=32.51 Aligned_cols=54 Identities=15% Similarity=0.119 Sum_probs=34.7
Q ss_pred CCCcEEEEecCCCCCCccc------CHHHHH-------HHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955 25 ENIPIVLCGNKVDVKNRQV------KAKQVT-------FHRKKNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v------~~~~~~-------~~~~~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
.++|+.+|.||+|...... ...+.. .+.....+++.+|+-++.|++.|..-++.
T Consensus 247 ~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 247 NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred cCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence 3899999999999542111 000111 11122357889999999999988765544
No 331
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=72.72 E-value=13 Score=27.66 Aligned_cols=45 Identities=7% Similarity=0.093 Sum_probs=31.9
Q ss_pred HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEE
Q 032955 9 TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY 59 (130)
Q Consensus 9 s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~ 59 (130)
.+..+.+.++.+.+ -++|..+|.||.++.. + +..+|+.+.+++++
T Consensus 199 glhD~kr~~el~~~--f~ip~~iViNr~~~g~---s-~ie~~~~e~gi~il 243 (284)
T COG1149 199 GLHDLKRALELVEH--FGIPTGIVINRYNLGD---S-EIEEYCEEEGIPIL 243 (284)
T ss_pred chhHHHHHHHHHHH--hCCceEEEEecCCCCc---h-HHHHHHHHcCCCee
Confidence 55566666655555 3899999999996532 3 56788888887755
No 332
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=71.71 E-value=13 Score=27.24 Aligned_cols=58 Identities=12% Similarity=0.144 Sum_probs=31.4
Q ss_pred CCCcEEEEecCCCCCC--ccc-CHH-HHHHHHhcCCcEEEeccCCCCC---hHHHHHHHHHHHhc
Q 032955 25 ENIPIVLCGNKVDVKN--RQV-KAK-QVTFHRKKNLQYYEISAKSNYN---FEKPFLYLARKLAG 82 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~--~~v-~~~-~~~~~~~~~~~~~e~Sak~~~~---v~~lf~~l~~~i~~ 82 (130)
-.+||.+|.||+|+.. ... ..- .....+-+|+.+-......+.. +++.|..+...+..
T Consensus 68 ~~~PVYvv~Tk~D~l~GF~ef~~~L~~~~r~q~lG~t~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 132 (266)
T PF14331_consen 68 VRLPVYVVFTKCDLLPGFDEFFSDLSEEEREQVLGFTFPYDEDADGDAWAWFDEEFDELVARLNA 132 (266)
T ss_pred CCCCeEeeeECCCcccCHHHHHHhCCHHHHhCCcccccCCccccccchHHHHHHHHHHHHHHHHH
Confidence 4899999999999754 111 000 1122233454332222333434 77777777765544
No 333
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=71.33 E-value=42 Score=27.62 Aligned_cols=70 Identities=10% Similarity=-0.047 Sum_probs=45.1
Q ss_pred HHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEec--cCCCCChHHHHHHHHHHHh
Q 032955 10 YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS--AKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~S--ak~~~~v~~lf~~l~~~i~ 81 (130)
|.++.+.++.+++ -++|+|+..|+..-.....-....+++.+.|..+..+. ++-|.|-.+|-+.+++.+.
T Consensus 387 ~~NL~~Hi~n~~~--fg~pvVVaiN~F~~Dt~~Ei~~l~~~~~~~g~~~~v~~~wa~GGeGa~eLA~~Vv~a~e 458 (587)
T PRK13507 387 CANLLHHIGTVKK--SGINPVVCINAFYTDTHAEIAIVRRLAEQAGARVAVSRHWEKGGEGALELADAVIDACN 458 (587)
T ss_pred HHHHHHHHHHHHH--cCCCeEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHhh
Confidence 4555555555555 48999999999864221101114577888887655444 5677777788887777665
No 334
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=68.57 E-value=18 Score=25.67 Aligned_cols=44 Identities=9% Similarity=0.203 Sum_probs=25.6
Q ss_pred CCcE-EEEecCCCCCCcc--cC---HHHHH-HHHhc--CCcEEEeccCCCCCh
Q 032955 26 NIPI-VLCGNKVDVKNRQ--VK---AKQVT-FHRKK--NLQYYEISAKSNYNF 69 (130)
Q Consensus 26 ~~pi-ilv~NK~Dl~~~~--v~---~~~~~-~~~~~--~~~~~e~Sak~~~~v 69 (130)
+.|. ++|.||.|+.+.. .. ..... +..+. +.+++.+||++...+
T Consensus 132 g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 132 GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRY 184 (225)
T ss_pred CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence 5674 5599999985311 11 11111 22222 357999999988543
No 335
>PTZ00258 GTP-binding protein; Provisional
Probab=67.72 E-value=7.1 Score=30.43 Aligned_cols=43 Identities=19% Similarity=0.073 Sum_probs=27.9
Q ss_pred CCCcEEEEecCC--CCC-C-cccCHHHHHHHHhc-CCcEEEeccCCCC
Q 032955 25 ENIPIVLCGNKV--DVK-N-RQVKAKQVTFHRKK-NLQYYEISAKSNY 67 (130)
Q Consensus 25 ~~~piilv~NK~--Dl~-~-~~v~~~~~~~~~~~-~~~~~e~Sak~~~ 67 (130)
...|+++|.|+. |+. . .........++.+. +.+++.+||+...
T Consensus 219 t~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E~ 266 (390)
T PTZ00258 219 TAKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFEE 266 (390)
T ss_pred hcCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHHH
Confidence 468999999999 762 1 11112234555565 4789999986654
No 336
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=67.52 E-value=60 Score=26.22 Aligned_cols=71 Identities=10% Similarity=0.085 Sum_probs=47.7
Q ss_pred HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEec--cCCCCChHHHHHHHHHHHhc
Q 032955 9 TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEIS--AKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 9 s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~S--ak~~~~v~~lf~~l~~~i~~ 82 (130)
.|.++.+.++.+++ -++|+|+..||.-... .-+.. ..+++.+.+.++..+. ++-|.|-.++-..++..+.+
T Consensus 354 G~aNL~~Hi~Nikk--fgvp~VVAIN~F~tDt-~~Ei~~i~~~~~~~gv~~~ls~vwakGg~Gg~eLA~kVv~~~~~ 427 (554)
T COG2759 354 GFANLLKHIENIKK--FGVPVVVAINKFPTDT-EAEIAAIEKLCEEHGVEVALSEVWAKGGEGGIELAKKVVEAIEQ 427 (554)
T ss_pred HHHHHHHHHHHHHH--cCCCeEEEeccCCCCC-HHHHHHHHHHHHHcCCceeehhhhhccCccHHHHHHHHHHHHhC
Confidence 45566555655655 4899999999985321 11112 3578888887644333 68888888888888888775
No 337
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=67.16 E-value=5.6 Score=28.85 Aligned_cols=26 Identities=19% Similarity=0.036 Sum_probs=22.8
Q ss_pred CcEEEeccCCCCChHHHHHHHHHHHh
Q 032955 56 LQYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 56 ~~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
.++|..||+++.|+..+++.+...++
T Consensus 241 ~pv~~gSa~~~~G~~~ll~~~~~~~p 266 (268)
T cd04170 241 VPVLCGSALTNIGVRELLDALVHLLP 266 (268)
T ss_pred EEEEEeeCCCCcCHHHHHHHHHHhCC
Confidence 57999999999999999998887653
No 338
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=65.47 E-value=13 Score=29.28 Aligned_cols=47 Identities=23% Similarity=0.305 Sum_probs=31.5
Q ss_pred CCcEEEEecCCCCCCcc------------------------cC--HHHHHHH----HhcCCcEEEeccCCCCChHHH
Q 032955 26 NIPIVLCGNKVDVKNRQ------------------------VK--AKQVTFH----RKKNLQYYEISAKSNYNFEKP 72 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~~------------------------v~--~~~~~~~----~~~~~~~~e~Sak~~~~v~~l 72 (130)
++|++++.+|.|+..+. |. .++...+ ..+-.|+|-+|.-+|+|++-+
T Consensus 303 ~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 303 NIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred CCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 89999999999986532 11 1122222 223368999999999997644
No 339
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=63.22 E-value=19 Score=27.44 Aligned_cols=39 Identities=26% Similarity=0.287 Sum_probs=25.4
Q ss_pred CCc-EEEEecCCCCCCc-c----cCHHHHHHHHhcCC-----cEEEeccC
Q 032955 26 NIP-IVLCGNKVDVKNR-Q----VKAKQVTFHRKKNL-----QYYEISAK 64 (130)
Q Consensus 26 ~~p-iilv~NK~Dl~~~-~----v~~~~~~~~~~~~~-----~~~e~Sak 64 (130)
++| ++++.||+|+.+. . |..+.+++..++++ |++.-||.
T Consensus 127 Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal 176 (394)
T COG0050 127 GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSAL 176 (394)
T ss_pred CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhh
Confidence 564 5678899999762 1 33445577777764 46766653
No 340
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=58.98 E-value=27 Score=27.15 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=28.6
Q ss_pred CCCcEEEEecCCCCCCcccC---HHHHHHHHhcCCcEEEeccCC
Q 032955 25 ENIPIVLCGNKVDVKNRQVK---AKQVTFHRKKNLQYYEISAKS 65 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~---~~~~~~~~~~~~~~~e~Sak~ 65 (130)
...|+++++||.|....... .....++...+..++.+||+.
T Consensus 205 t~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~~~vV~~sA~~ 248 (372)
T COG0012 205 TAKPMLYVANVSEDDLANLNEYVKRLKELAAKENAEVVPVSAAI 248 (372)
T ss_pred hcCCeEEEEECCcccccchhHHHHHHHHHhhhcCCcEEEeeHHH
Confidence 47899999999997542211 123456666777899999863
No 341
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=58.49 E-value=56 Score=22.27 Aligned_cols=57 Identities=5% Similarity=-0.012 Sum_probs=34.4
Q ss_pred CcEEEEecCCCCCC-ccc-------CHHHHHHHHhcCCcEEEec-----cCCCCChHHHHHHHHHHHhcC
Q 032955 27 IPIVLCGNKVDVKN-RQV-------KAKQVTFHRKKNLQYYEIS-----AKSNYNFEKPFLYLARKLAGD 83 (130)
Q Consensus 27 ~piilv~NK~Dl~~-~~v-------~~~~~~~~~~~~~~~~e~S-----ak~~~~v~~lf~~l~~~i~~~ 83 (130)
.++++|.|+.|... ..+ ......+.+..+-.|+..+ +..+.++.+|+..+.+.+.+.
T Consensus 117 ~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 117 DHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred hcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 57788888888533 211 1122334445454454444 455778999998888888763
No 342
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=57.91 E-value=11 Score=24.04 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=15.2
Q ss_pred EecCCCCCCcccCHH-HHHHHHhc-CCcEEEeccC
Q 032955 32 CGNKVDVKNRQVKAK-QVTFHRKK-NLQYYEISAK 64 (130)
Q Consensus 32 v~NK~Dl~~~~v~~~-~~~~~~~~-~~~~~e~Sak 64 (130)
++||+|++. ..+ ...+..++ +..++.+||.
T Consensus 1 AaNK~D~~~---a~~ni~kl~~~~~~~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPA---ADENIEKLKEKYPDEPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S----HHHHHHHHHHHTT-EEEEE-HH
T ss_pred CCccccccc---cHhHHHHHHHhCCCCceeeccHH
Confidence 579999743 222 33444444 3678888875
No 343
>PRK07560 elongation factor EF-2; Reviewed
Probab=56.25 E-value=35 Score=28.83 Aligned_cols=14 Identities=43% Similarity=0.318 Sum_probs=12.0
Q ss_pred CCcEEEEecCCCCC
Q 032955 26 NIPIVLCGNKVDVK 39 (130)
Q Consensus 26 ~~piilv~NK~Dl~ 39 (130)
+.|.|++.||+|+.
T Consensus 139 ~~~~iv~iNK~D~~ 152 (731)
T PRK07560 139 RVKPVLFINKVDRL 152 (731)
T ss_pred CCCeEEEEECchhh
Confidence 57889999999975
No 344
>PLN02759 Formate--tetrahydrofolate ligase
Probab=55.58 E-value=79 Score=26.38 Aligned_cols=69 Identities=6% Similarity=-0.075 Sum_probs=44.1
Q ss_pred HHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-HHHHHHhcC-CcEEEec--cCCCCChHHHHHHHHHHHh
Q 032955 10 YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKN-LQYYEIS--AKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~-~~~~e~S--ak~~~~v~~lf~~l~~~i~ 81 (130)
+.++.+.++.+++ -++|+|+..|+..-.... +.+ ..++|.+.| ..+..+. ++-|.|-.+|-+.+++.+.
T Consensus 436 ~~NL~~Hi~n~~~--fg~pvVVaiN~F~~Dt~~-Ei~~v~~~~~~~ga~~~~~~~~wa~GGeGa~eLA~~Vv~a~e 508 (637)
T PLN02759 436 CVNLARHIENTKS--YGVNVVVAINMFATDTEA-ELEAVRQAALAAGAFDAVLCTHHAHGGKGAVDLGEAVQKACE 508 (637)
T ss_pred hhhHHHHHHHHHH--cCCCeEEEecCCCCCCHH-HHHHHHHHHHHcCCCcEEEechhhcccHHHHHHHHHHHHHHh
Confidence 4444444444444 489999999998642211 112 457788888 4655444 5677788888888887665
No 345
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=55.41 E-value=15 Score=30.09 Aligned_cols=70 Identities=9% Similarity=0.033 Sum_probs=40.8
Q ss_pred HHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEec--cCCCCChHHHHHHHHHHH
Q 032955 9 TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS--AKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 9 s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~S--ak~~~~v~~lf~~l~~~i 80 (130)
-|.++.+-++.++. -++|+|+..|+.--.....-....++|.+.|..+..+. ++=|.|-.+|-+.+++.+
T Consensus 356 G~~NL~rHIeNik~--fGvpvVVAIN~F~tDT~aEi~~I~~~~~~~Gv~~avs~~wa~GGeGa~eLA~~Vv~a~ 427 (557)
T PF01268_consen 356 GFANLERHIENIKK--FGVPVVVAINRFPTDTDAEIELIRELCEELGVRAAVSEHWAKGGEGAVELAEAVVEAC 427 (557)
T ss_dssp HHHHHHHHHHHHHC--TT--EEEEEE--TTS-HHHHHHHHHHCCCCCEEEEEC-HHHHGGGGCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHh--cCCCeEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEechhhcccccHHHHHHHHHHHh
Confidence 45666666665655 49999999999864211100113467777887744333 577788888888888887
No 346
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=54.61 E-value=1.2e+02 Score=25.04 Aligned_cols=70 Identities=9% Similarity=-0.004 Sum_probs=44.2
Q ss_pred HHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHh-cCCcEEEec--cCCCCChHHHHHHHHHHHh
Q 032955 10 YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK-KNLQYYEIS--AKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~-~~~~~~e~S--ak~~~~v~~lf~~l~~~i~ 81 (130)
|.++.+.++.+++ -++|+|+..|+..-.....-....++|.+ .+..+..+. ++-|.|-.+|-+.+++.+.
T Consensus 379 ~~NL~~Hi~n~~~--fg~pvVVaiN~F~~Dt~~Ei~~~~~~~~~~~~~~~~~~~~wa~GGeGa~eLA~~Vv~a~e 451 (578)
T PRK13506 379 FANLKWHINNVAQ--YGLPVVVAINRFPTDTDEELEWLKEAVLLTGAFGCEISEAFAQGGEGATALAQAVVRACE 451 (578)
T ss_pred HHHHHHHHHHHHH--cCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEEechhhccchhHHHHHHHHHHHhh
Confidence 4455555555555 48999999999864211101113567777 566655444 5777788888887776665
No 347
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=51.95 E-value=19 Score=27.86 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=27.4
Q ss_pred CCCcEEEEecCCCCC--C-cccCHHHHHHHHhcCCcEEEeccCCC
Q 032955 25 ENIPIVLCGNKVDVK--N-RQVKAKQVTFHRKKNLQYYEISAKSN 66 (130)
Q Consensus 25 ~~~piilv~NK~Dl~--~-~~v~~~~~~~~~~~~~~~~e~Sak~~ 66 (130)
...|+++|+|+.|.. . .........++.+.+.+++.+||+-.
T Consensus 198 t~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~E 242 (364)
T PRK09601 198 TAKPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAKIE 242 (364)
T ss_pred ccCCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 478999999999841 1 11112234566667888999998533
No 348
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=50.99 E-value=58 Score=24.09 Aligned_cols=59 Identities=19% Similarity=0.142 Sum_probs=38.0
Q ss_pred CCCcEEEEecCCCCCCcccC-----------------HH-HHHH----HHhcC------CcEEEeccCCCCChHHHHHHH
Q 032955 25 ENIPIVLCGNKVDVKNRQVK-----------------AK-QVTF----HRKKN------LQYYEISAKSNYNFEKPFLYL 76 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~-----------------~~-~~~~----~~~~~------~~~~e~Sak~~~~v~~lf~~l 76 (130)
.+.++|+..||.|+.+..+. .. +..| ....+ +....++|.+-.||.-+|..+
T Consensus 265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaV 344 (359)
T KOG0085|consen 265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAV 344 (359)
T ss_pred cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHH
Confidence 48899999999998542211 01 1111 11222 224567888999999999988
Q ss_pred HHHHhcC
Q 032955 77 ARKLAGD 83 (130)
Q Consensus 77 ~~~i~~~ 83 (130)
...++..
T Consensus 345 kDtiLq~ 351 (359)
T KOG0085|consen 345 KDTILQL 351 (359)
T ss_pred HHHHHHh
Confidence 8877653
No 349
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=50.85 E-value=15 Score=27.01 Aligned_cols=26 Identities=15% Similarity=-0.061 Sum_probs=23.0
Q ss_pred CcEEEeccCCCCChHHHHHHHHHHHh
Q 032955 56 LQYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 56 ~~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
+|+|..||.++.||..+++.+...++
T Consensus 243 ~PV~~gSa~~~~Gi~~lld~i~~~~p 268 (270)
T cd01886 243 VPVLCGSAFKNKGVQPLLDAVVDYLP 268 (270)
T ss_pred EEEEeCcCCCCcCHHHHHHHHHHhcC
Confidence 58999999999999999998887653
No 350
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=49.98 E-value=15 Score=26.87 Aligned_cols=26 Identities=15% Similarity=0.055 Sum_probs=23.1
Q ss_pred CcEEEeccCCCCChHHHHHHHHHHHh
Q 032955 56 LQYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 56 ~~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
+|+|..||.++.||..|++.|...++
T Consensus 240 ~Pv~~gsa~~~~Gv~~Lld~i~~~~P 265 (267)
T cd04169 240 TPVFFGSALNNFGVQELLDALVDLAP 265 (267)
T ss_pred EEEEecccccCcCHHHHHHHHHHHCC
Confidence 57999999999999999999888764
No 351
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=46.32 E-value=29 Score=21.65 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=31.2
Q ss_pred eecCcHHHHHhHHHHHHHHHHhCC-CCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEe
Q 032955 2 FDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEI 61 (130)
Q Consensus 2 ~d~~~~~s~~~~~~~~~~~~~~~~-~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~ 61 (130)
++++....+..+..+.+.+++..+ ++++++-|+=... . .+.+.+.|...+..
T Consensus 56 iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~-------~-~~~~~~~G~D~~~~ 108 (119)
T cd02067 56 LSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTR-------D-FKFLKEIGVDAYFG 108 (119)
T ss_pred EeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCCh-------h-HHHHHHcCCeEEEC
Confidence 345556677888888888887655 6666665544331 1 13455667665443
No 352
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=44.77 E-value=1.9e+02 Score=24.25 Aligned_cols=70 Identities=13% Similarity=0.096 Sum_probs=44.3
Q ss_pred HHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-HHHHHH-hcC-CcEEEec--cCCCCChHHHHHHHHHHHhc
Q 032955 10 YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHR-KKN-LQYYEIS--AKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~~~~~~-~~~-~~~~e~S--ak~~~~v~~lf~~l~~~i~~ 82 (130)
|.++.+.++.+++ -++|+|+..|+.--.... +.+ ..++|. +.| ..+..+. ++-|.|-.+|-+.+++.+.+
T Consensus 423 ~~NL~~Hien~~~--fgvpvVVAIN~F~tDT~~-Ei~~i~~~~~~~~ga~~~~~s~~~a~GG~Ga~eLA~~Vv~a~~~ 497 (625)
T PTZ00386 423 LSNLQRHIQNIRK--FGVPVVVALNKFSTDTDA-ELELVKELALQEGGAADVVVTDHWAKGGAGAVDLAQALIRVTEN 497 (625)
T ss_pred HHHHHHHHHHHHH--cCCCeEEEecCCCCCCHH-HHHHHHHHHHHhcCCccEEEechhhccchhHHHHHHHHHHHHhc
Confidence 4455555555554 489999999998642111 112 346777 778 4555444 57777888888888876643
No 353
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=44.18 E-value=42 Score=24.76 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=29.6
Q ss_pred CeecCcHHHHHhHHHH---HHHHHHhCCCCcEEEEecCCCCCC
Q 032955 1 MFDVTARLTYKNVPTW---HRDLCRVCENIPIVLCGNKVDVKN 40 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~---~~~~~~~~~~~piilv~NK~Dl~~ 40 (130)
|||++..+--..+..+ ++.+.++++...+++...|.||..
T Consensus 88 vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 88 VFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred eeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcc
Confidence 6888887654555444 455667778889999999999864
No 354
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=43.77 E-value=44 Score=25.14 Aligned_cols=49 Identities=20% Similarity=0.248 Sum_probs=33.3
Q ss_pred CCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHH
Q 032955 26 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 79 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~ 79 (130)
-+|.+.+.||+|-- +.+...+.. .......+||-++.|++++...+-..
T Consensus 231 yVp~iyvLNkIdsI----SiEELdii~-~iphavpISA~~~wn~d~lL~~mwey 279 (358)
T KOG1487|consen 231 YVPCIYVLNKIDSI----SIEELDIIY-TIPHAVPISAHTGWNFDKLLEKMWEY 279 (358)
T ss_pred eeeeeeeeccccee----eeeccceee-eccceeecccccccchHHHHHHHhhc
Confidence 57999999999832 222112211 12347899999999999998877654
No 355
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=43.02 E-value=29 Score=27.00 Aligned_cols=37 Identities=24% Similarity=0.152 Sum_probs=24.9
Q ss_pred CcEEEEecCCCCCC-----cccCHHHHHHHHhcCC-----cEEEecc
Q 032955 27 IPIVLCGNKVDVKN-----RQVKAKQVTFHRKKNL-----QYYEISA 63 (130)
Q Consensus 27 ~piilv~NK~Dl~~-----~~v~~~~~~~~~~~~~-----~~~e~Sa 63 (130)
..+++..||.|+.+ .-|+.+.+++..++|+ |++.=||
T Consensus 171 ~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSA 217 (449)
T KOG0460|consen 171 KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSA 217 (449)
T ss_pred ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecch
Confidence 35778899999874 2234456677888764 5776554
No 356
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=42.61 E-value=1.1e+02 Score=23.09 Aligned_cols=50 Identities=18% Similarity=0.168 Sum_probs=34.3
Q ss_pred CCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
.-++++-|.||+|.. +.+ ...+|.+- ..+-+|+....|++.+.+.+-..+
T Consensus 237 ~Y~~ClYvYnKID~v----s~eevdrlAr~P--nsvViSC~m~lnld~lle~iWe~l 287 (364)
T KOG1486|consen 237 VYIKCLYVYNKIDQV----SIEEVDRLARQP--NSVVISCNMKLNLDRLLERIWEEL 287 (364)
T ss_pred eEEEEEEEeecccee----cHHHHHHHhcCC--CcEEEEeccccCHHHHHHHHHHHh
Confidence 357899999999953 433 23444432 245678888999998888776654
No 357
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=42.33 E-value=36 Score=24.68 Aligned_cols=15 Identities=13% Similarity=0.073 Sum_probs=10.0
Q ss_pred CCcEEEEecCCCCCC
Q 032955 26 NIPIVLCGNKVDVKN 40 (130)
Q Consensus 26 ~~piilv~NK~Dl~~ 40 (130)
+.++++|.||+|..+
T Consensus 192 ~~rti~ViTK~D~~~ 206 (240)
T smart00053 192 GERTIGVITKLDLMD 206 (240)
T ss_pred CCcEEEEEECCCCCC
Confidence 567777777777643
No 358
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=41.70 E-value=38 Score=26.19 Aligned_cols=59 Identities=19% Similarity=0.207 Sum_probs=38.3
Q ss_pred CCCcEEEEecCCCCCCcc---------------cC-H-HHHHHH--------Hhc--CCcEEEeccCCCCChHHHHHHHH
Q 032955 25 ENIPIVLCGNKVDVKNRQ---------------VK-A-KQVTFH--------RKK--NLQYYEISAKSNYNFEKPFLYLA 77 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~---------------v~-~-~~~~~~--------~~~--~~~~~e~Sak~~~~v~~lf~~l~ 77 (130)
.+.++||..||.||-+.. +. . ++..+. ... .+-+..++|.+-.+|+.+|..+.
T Consensus 261 ~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~ 340 (354)
T KOG0082|consen 261 ANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVT 340 (354)
T ss_pred ccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHH
Confidence 489999999999973211 11 1 122111 111 24467788999999999999888
Q ss_pred HHHhcC
Q 032955 78 RKLAGD 83 (130)
Q Consensus 78 ~~i~~~ 83 (130)
..|...
T Consensus 341 d~Ii~~ 346 (354)
T KOG0082|consen 341 DTIIQN 346 (354)
T ss_pred HHHHHH
Confidence 877643
No 359
>PRK05264 transcriptional repressor protein MetJ; Provisional
Probab=41.50 E-value=26 Score=21.60 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHcC-CCCCCCCC
Q 032955 104 AAQQQHEAELAAAAS-QPLPDDDD 126 (130)
Q Consensus 104 ~~~~~~~~~~~~~~~-~p~~~~~~ 126 (130)
.+..-.|-++..|=. +|+|+|||
T Consensus 53 TNSELLCEAFLHA~TGQPLP~D~D 76 (105)
T PRK05264 53 TNSELLCEAFLHAFTGQPLPDDED 76 (105)
T ss_pred ccHHHHHHHHHHHHcCCCCCChhh
Confidence 455677888888874 99999886
No 360
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=40.97 E-value=26 Score=30.13 Aligned_cols=15 Identities=47% Similarity=0.368 Sum_probs=13.4
Q ss_pred CCCcEEEEecCCCCC
Q 032955 25 ENIPIVLCGNKVDVK 39 (130)
Q Consensus 25 ~~~piilv~NK~Dl~ 39 (130)
.++|+|++.||+|..
T Consensus 149 ~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 149 ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCCCEEEEEECCccc
Confidence 489999999999976
No 361
>cd00490 Met_repressor_MetJ Met Repressor, MetJ. MetJ is a bacterial regulatory protein that uses S-adenosylmethionine (SAM) as a corepressor to regulate the production of Methionine. MetJ binds arrays of two to five adjacent copies of an eight base-pair 'metbox' sequence. MetJ forms sufficiently strong interactions with the sugar-phosphate backbone to accomodate sequence variation in natural operators. However, it is very sensitive to particular base changes in the operator. MetJ exists as a homodimer.
Probab=40.84 E-value=28 Score=21.29 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHcC-CCCCCCCC
Q 032955 104 AAQQQHEAELAAAAS-QPLPDDDD 126 (130)
Q Consensus 104 ~~~~~~~~~~~~~~~-~p~~~~~~ 126 (130)
.+..-.|-.+..|-. +|+|+|||
T Consensus 52 TNSELLCEAFLHAfTGQPLP~D~D 75 (103)
T cd00490 52 TNSELLCEAFLHAFTGQPLPDDAD 75 (103)
T ss_pred ccHHHHHHHHHHHhcCCCCCChhh
Confidence 455677888888874 99999886
No 362
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=40.45 E-value=23 Score=29.78 Aligned_cols=15 Identities=53% Similarity=0.454 Sum_probs=12.8
Q ss_pred CCCcEEEEecCCCCC
Q 032955 25 ENIPIVLCGNKVDVK 39 (130)
Q Consensus 25 ~~~piilv~NK~Dl~ 39 (130)
.+.|+++|+||+|..
T Consensus 137 ~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 137 ENVKPVLFINKVDRL 151 (720)
T ss_pred cCCCEEEEEEChhcc
Confidence 467889999999975
No 363
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=39.83 E-value=29 Score=28.20 Aligned_cols=28 Identities=11% Similarity=-0.029 Sum_probs=24.9
Q ss_pred CcEEEeccCCCCChHHHHHHHHHHHhcC
Q 032955 56 LQYYEISAKSNYNFEKPFLYLARKLAGD 83 (130)
Q Consensus 56 ~~~~e~Sak~~~~v~~lf~~l~~~i~~~ 83 (130)
.|+|.-||.++.||..+++.++..++.-
T Consensus 250 ~PV~~GSA~~n~Gv~~LLd~i~~~~PsP 277 (527)
T TIGR00503 250 TPVFFGTALGNFGVDHFLDGLLQWAPKP 277 (527)
T ss_pred eEEEEeecccCccHHHHHHHHHHHCCCC
Confidence 5789999999999999999999988643
No 364
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=39.25 E-value=34 Score=23.15 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=24.5
Q ss_pred cHHHHHhHHHHHHHHHHhCCCCcEEEEecCCC
Q 032955 6 ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 37 (130)
Q Consensus 6 ~~~s~~~~~~~~~~~~~~~~~~piilv~NK~D 37 (130)
-+.|++.=..|+.+.--+.+.-.+|+||||-=
T Consensus 95 hp~s~~dK~eWl~E~FPFi~~qn~vfCgnKni 126 (180)
T COG4502 95 HPKSCEDKGEWLKEKFPFISYQNIVFCGNKNI 126 (180)
T ss_pred CchhHHHHHHHHHHHCCCCChhhEEEecCCCe
Confidence 46788888889987655556678999999863
No 365
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=38.25 E-value=63 Score=24.56 Aligned_cols=34 Identities=26% Similarity=0.159 Sum_probs=20.2
Q ss_pred EEEecCCCCCCcccCHHHHHHHHhcC--CcEEEecc
Q 032955 30 VLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISA 63 (130)
Q Consensus 30 ilv~NK~Dl~~~~v~~~~~~~~~~~~--~~~~e~Sa 63 (130)
++|.||+|+.+...-.......++.+ ..++.+|.
T Consensus 149 ~ivlNK~Dlv~~~~l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 149 VIVLNKTDLVDAEELEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred EEEEecccCCCHHHHHHHHHHHHHhCCCCeEEEccc
Confidence 77899999976331111234444544 55777765
No 366
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=37.93 E-value=58 Score=24.59 Aligned_cols=42 Identities=7% Similarity=-0.048 Sum_probs=27.9
Q ss_pred cEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHH
Q 032955 28 PIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 28 piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf 73 (130)
+.-+|.||.|...+. ......+...++|+..++ +|.+++++.
T Consensus 261 ~~giIlTKlD~t~~~--G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 261 LTGIILTKLDGTAKG--GVVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCEEEEECCCCCCCc--cHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 446788999953221 123455667788888887 888887764
No 367
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=37.90 E-value=84 Score=20.54 Aligned_cols=58 Identities=10% Similarity=0.086 Sum_probs=40.5
Q ss_pred CCcEEEEecCCCCCC-cccCH------H-HHHHHHhcCC-----cEEEeccCCCCChHHHHHHHHHHHhcC
Q 032955 26 NIPIVLCGNKVDVKN-RQVKA------K-QVTFHRKKNL-----QYYEISAKSNYNFEKPFLYLARKLAGD 83 (130)
Q Consensus 26 ~~piilv~NK~Dl~~-~~v~~------~-~~~~~~~~~~-----~~~e~Sak~~~~v~~lf~~l~~~i~~~ 83 (130)
--.++++|.|.+-.+ ..-.. + ..+++.++|+ .++++||-++..+.+.+...+..+.+.
T Consensus 54 aDGV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~l 124 (132)
T COG1908 54 ADGVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEPERVRVLWISAAEGEKFAETINEFVERIKEL 124 (132)
T ss_pred CCeEEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHHHHHHHHh
Confidence 346788899987533 11011 1 2355667764 599999999999999999998888654
No 368
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=37.52 E-value=81 Score=19.96 Aligned_cols=30 Identities=23% Similarity=0.270 Sum_probs=25.6
Q ss_pred HHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955 49 TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 49 ~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
..+...|++++.++.....++..+...|-.
T Consensus 95 ~~l~~agiplir~~~~~~~~~~~l~~~l~~ 124 (126)
T PF10881_consen 95 RVLKKAGIPLIRISPKDSYSVEELRRDLRE 124 (126)
T ss_pred HHHHHCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 567788999999999999999988877654
No 369
>PF10161 DDDD: Putative mitochondrial precursor protein; InterPro: IPR018782 This entry represents a family of small conserved proteins found from nematodes to humans. The C-terminal region is rich in asparagine. These proteins have been putatively designated as mitochondrial precursor proteins but this has not been confirmed.
Probab=36.58 E-value=17 Score=21.74 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=8.5
Q ss_pred HHHHHHcCCCCCCCCCCc
Q 032955 111 AELAAAASQPLPDDDDDA 128 (130)
Q Consensus 111 ~~~~~~~~~p~~~~~~~~ 128 (130)
.++.+..-.=.|+|||||
T Consensus 61 A~fLEe~diFvP~DDDDD 78 (79)
T PF10161_consen 61 AQFLEENDIFVPEDDDDD 78 (79)
T ss_pred HHHHHHhcccCCCcCCCC
Confidence 334444433336666654
No 370
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=36.39 E-value=1.1e+02 Score=19.33 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=28.0
Q ss_pred cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955 41 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 41 ~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
..++.+..++|++.++|.|++.. .....++...+.+.|
T Consensus 85 ~~iP~~~i~~A~~~~lPli~ip~--~~~f~~I~~~v~~~I 122 (123)
T PF07905_consen 85 DEIPEEIIELADELGLPLIEIPW--EVPFSDITREVMRAI 122 (123)
T ss_pred ccCCHHHHHHHHHcCCCEEEeCC--CCCHHHHHHHHHHHh
Confidence 35677788999999999999986 555566666665544
No 371
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=36.38 E-value=1.8e+02 Score=22.02 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=35.4
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i~ 81 (130)
.++|++++...... ..+..+.|++.+++.+.+...+..=+..+...|...+.
T Consensus 81 ~~~P~iIvt~~~~~-----p~~l~~~a~~~~ipll~t~~~t~~~i~~l~~~L~~~la 132 (308)
T PRK05428 81 LEPPCIIVTRGLEP-----PPELLEAAKEAGIPLLRTPLSTTRLISKLTNYLDRKLA 132 (308)
T ss_pred CCCCEEEEECcCCC-----CHHHHHHHHHcCCcEEEeCCcHHHHHHHHHHHHHHHhh
Confidence 58999888776654 44567889999999998776655444455444444443
No 372
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=36.10 E-value=68 Score=20.64 Aligned_cols=35 Identities=11% Similarity=0.213 Sum_probs=21.3
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccC
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK 64 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak 64 (130)
.++|++++..-... ..+..+.|++++++.+.++..
T Consensus 80 ~~~P~iIvt~~~~~-----p~~l~e~a~~~~ipll~t~~~ 114 (127)
T PF02603_consen 80 YNPPCIIVTRGLEP-----PPELIELAEKYNIPLLRTPLS 114 (127)
T ss_dssp TT-S-EEEETTT--------HHHHHHHHHCT--EEEESS-
T ss_pred CCCCEEEEECcCCC-----CHHHHHHHHHhCCcEEEcCCc
Confidence 58899988776653 455778899999998887653
No 373
>cd03362 TOPRIM_TopoIA_TopoIII TOPRIM_TopoIA_TopoIII: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to topoisomerase III. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving one strand of the DNA duplex, covalently linking to the 5' phosphoryl end of the DNA break and, allowing the other strand of the duplex to pass through the gap. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=35.71 E-value=67 Score=21.24 Aligned_cols=51 Identities=8% Similarity=0.120 Sum_probs=26.4
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHHHh---cCCcEEEeccCCCCChHHHHHH
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRK---KNLQYYEISAKSNYNFEKPFLY 75 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~---~~~~~~e~Sak~~~~v~~lf~~ 75 (130)
.+.-.|++++=+|.++..+..+....+.. ..+.=...|+.|...|...|..
T Consensus 97 ~~ad~ii~atD~DrEGE~I~~~i~~~~~~~~~~~v~R~~fsslT~~~I~~A~~n 150 (151)
T cd03362 97 KRADEIVIATDADREGELIGREILEYAKCVKRKPVKRAWFSSLTPKAIRRAFKN 150 (151)
T ss_pred hCCCeEEEccCCCccccHHHHHHHHHhCCCCCCcEEEEEEccCCHHHHHHHHhc
Confidence 34455666666665544333333333332 1223456677777666666653
No 374
>PTZ00416 elongation factor 2; Provisional
Probab=35.57 E-value=29 Score=29.86 Aligned_cols=15 Identities=53% Similarity=0.428 Sum_probs=13.2
Q ss_pred CCCcEEEEecCCCCC
Q 032955 25 ENIPIVLCGNKVDVK 39 (130)
Q Consensus 25 ~~~piilv~NK~Dl~ 39 (130)
.++|+|++.||+|+.
T Consensus 143 ~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 143 ERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCEEEEEEChhhh
Confidence 368999999999986
No 375
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=34.57 E-value=1.6e+02 Score=20.48 Aligned_cols=80 Identities=10% Similarity=-0.007 Sum_probs=46.7
Q ss_pred CeecCcHHHHHhHHHHHHHHHHh-CCCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
|+|.++..||..++.=+..+.-. .-+.-++++-|-.....-.+... ..+++..+..+++.+--.+..+...+=++|.+
T Consensus 71 vinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAqRLL~ 150 (176)
T PF11111_consen 71 VINLHSKYSLQSVEASLSHVDPSFFLGKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQRLLR 150 (176)
T ss_pred EEecCCcccHHHHHHHHhhCChhhhccceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHHHHHH
Confidence 35666666777766533333221 12334444433333322344444 67899999999998877777776666666666
Q ss_pred HH
Q 032955 79 KL 80 (130)
Q Consensus 79 ~i 80 (130)
.+
T Consensus 151 ~l 152 (176)
T PF11111_consen 151 ML 152 (176)
T ss_pred HH
Confidence 54
No 376
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=33.14 E-value=89 Score=19.61 Aligned_cols=28 Identities=11% Similarity=0.100 Sum_probs=19.6
Q ss_pred HHHhHHHHHHHHHHhCCCCcEEEEecCC
Q 032955 9 TYKNVPTWHRDLCRVCENIPIVLCGNKV 36 (130)
Q Consensus 9 s~~~~~~~~~~~~~~~~~~piilv~NK~ 36 (130)
........+..++....++|++++.+..
T Consensus 50 ~~~~~~~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 50 EEDEAQELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp HHHHHHHHHHHHHHHSTT-EEEEEESCC
T ss_pred cchhHHHHHHHHHHhCCCCCEEEEecCC
Confidence 3344455777777777899999998865
No 377
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=33.08 E-value=1.1e+02 Score=21.24 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=30.6
Q ss_pred HHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEe
Q 032955 7 RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEI 61 (130)
Q Consensus 7 ~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~ 61 (130)
++--+.+..|+.+++. .++.+++|-|..- . -...++..++++|+.-
T Consensus 45 ~~~tpe~~~W~~e~k~--~gi~v~vvSNn~e---~----RV~~~~~~l~v~fi~~ 90 (175)
T COG2179 45 PDATPELRAWLAELKE--AGIKVVVVSNNKE---S----RVARAAEKLGVPFIYR 90 (175)
T ss_pred CCCCHHHHHHHHHHHh--cCCEEEEEeCCCH---H----HHHhhhhhcCCceeec
Confidence 3444567889998877 5788888888542 1 1234566778887754
No 378
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=32.81 E-value=87 Score=22.22 Aligned_cols=32 Identities=9% Similarity=0.120 Sum_probs=27.1
Q ss_pred HHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955 47 QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 47 ~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
-.+|+++.+++++-+|+=+..=|..||+.++.
T Consensus 81 f~e~ike~di~fiVvSsGm~~fI~~lfe~ivg 112 (220)
T COG4359 81 FVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVG 112 (220)
T ss_pred HHHHHHHcCCCEEEEeCCCchHHHHHHHhhcc
Confidence 45789999999999998888778888888773
No 379
>cd03363 TOPRIM_TopoIA_TopoI TOPRIM_TopoIA_TopoI: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to Escherichia coli DNA topoisomerase I. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving one strand of the DNA duplex, covalently linking to the 5' phosphoryl end of the DNA break and, allowing the other strand of the duplex to pass through the gap. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=32.61 E-value=67 Score=20.58 Aligned_cols=51 Identities=6% Similarity=0.050 Sum_probs=29.2
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHHHh-cCCcEEEeccCCCCChHHHHHH
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRK-KNLQYYEISAKSNYNFEKPFLY 75 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~-~~~~~~e~Sak~~~~v~~lf~~ 75 (130)
.++--|++++-.|.++..+.....+++.. ..+.-+..|+.|...|...|..
T Consensus 71 ~~~~eiiiAtD~drEGe~i~~~i~~~~~~~~~v~Rl~~sslt~~~I~~A~~n 122 (123)
T cd03363 71 KKADEIYLATDPDREGEAIAWHLAEVLKLKKNVKRVVFNEITKEAIKEALKN 122 (123)
T ss_pred hcCCEEEEcCCCCcchHHHHHHHHHHcCCCCCeEEEEEccCCHHHHHHHHhC
Confidence 45667777887776543332222333332 1234567788888777777653
No 380
>PRK14974 cell division protein FtsY; Provisional
Probab=32.34 E-value=86 Score=23.96 Aligned_cols=42 Identities=7% Similarity=0.005 Sum_probs=27.0
Q ss_pred EEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHHH
Q 032955 29 IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 74 (130)
Q Consensus 29 iilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~ 74 (130)
--++.||.|...+. ......+...+.|+..++ +|.+|+++..
T Consensus 282 ~giIlTKlD~~~~~--G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 282 DGVILTKVDADAKG--GAALSIAYVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred CEEEEeeecCCCCc--cHHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence 45678999964321 123345556678877777 7899887653
No 381
>PF01340 MetJ: Met Apo-repressor, MetJ; InterPro: IPR002084 Binding of a specific DNA fragment and S-adenosyl methionine (SAM) co-repressor molecules to the Escherichia coli methionine repressor (MetJ) leads to a significant reduction in dynamic flexibility of the ternary complex, with considerable entropy-enthalpy compensation, not necessarily involving any overall conformational change []. MetJ is a regulatory protein which when combined with S-adenosylmethionine (SAM) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis. It is also autoregulated. The crystal structure of the met repressor-operator complex shows two dimeric repressor molecules bound to adjacent sites 8 base pairs apart on an 18-base-pair DNA fragment. Sequence specificity is achieved by insertion of double-stranded antiparallel protein beta-ribbons into the major groove of B-form DNA, with direct hydrogen-bonding between amino-acid side chains and the base pairs. The repressor also recognises sequence-dependent distortion or flexibility of the operator phosphate backbone, conferring specificity even for inaccessible base pairs [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006555 methionine metabolic process; PDB: 1MJO_D 1CMB_A 1MJQ_C 1CMC_B 1MJK_A 1MJ2_A 1MJP_A 1MJM_B 1CMA_B 1MJL_A ....
Probab=31.41 E-value=30 Score=21.17 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHc-CCCCCCCCC
Q 032955 104 AAQQQHEAELAAAA-SQPLPDDDD 126 (130)
Q Consensus 104 ~~~~~~~~~~~~~~-~~p~~~~~~ 126 (130)
.+..-.|-.+..|- -+|+|+|+|
T Consensus 52 TNSeLLcEAFLHAfTGQPLP~D~d 75 (104)
T PF01340_consen 52 TNSELLCEAFLHAFTGQPLPTDDD 75 (104)
T ss_dssp SHHHHHHHHHHHHHH------TTG
T ss_pred ccHHHHHHHHHHHhcCCCCCChhh
Confidence 45677888888887 599999886
No 382
>PF07764 Omega_Repress: Omega Transcriptional Repressor; InterPro: IPR011686 The omega transcriptional repressor regulates expression of genes involved in copy number control and stable maintenance of plasmids. The omega protein belongs to the structural superfamily of MetJ/Arc repressors featuring a ribbon-helix-helix DNA-binding motif with the beta-ribbon located in and recognising the major groove of operator DNA [].; PDB: 2BNW_D 1IRQ_A 2CAX_B 2BNZ_A.
Probab=31.19 E-value=33 Score=19.49 Aligned_cols=20 Identities=20% Similarity=0.106 Sum_probs=14.8
Q ss_pred ccCCCCChHHHHHHHHHHHh
Q 032955 62 SAKSNYNFEKPFLYLARKLA 81 (130)
Q Consensus 62 Sak~~~~v~~lf~~l~~~i~ 81 (130)
||++|.||.++.+...+.-+
T Consensus 44 tAknGgNvKEvme~~lr~~l 63 (71)
T PF07764_consen 44 TAKNGGNVKEVMEQALREKL 63 (71)
T ss_dssp HHHSSS-HHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHH
Confidence 68999999999887666543
No 383
>PRK04017 hypothetical protein; Provisional
Probab=30.02 E-value=1.2e+02 Score=19.94 Aligned_cols=32 Identities=22% Similarity=0.246 Sum_probs=24.8
Q ss_pred HHHHHhHHHHHHHHHHhCCCCcEEEEecCCCC
Q 032955 7 RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 38 (130)
Q Consensus 7 ~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl 38 (130)
.+.|+.+..|+.++...+.+--+|+|--|.|.
T Consensus 3 ~~~~~~~~e~i~~L~e~s~~g~vIVVEGk~D~ 34 (132)
T PRK04017 3 RENYERFEEIIEELKEFSEAGAPIIVEGKRDV 34 (132)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEeCccHH
Confidence 35688999999999988765456677778874
No 384
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=29.42 E-value=1.2e+02 Score=25.68 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=13.8
Q ss_pred CCCcEEEEecCCCCCC
Q 032955 25 ENIPIVLCGNKVDVKN 40 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~ 40 (130)
.++|.+++.||.|...
T Consensus 127 ~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 127 YGVPRILFVNKMDRLG 142 (697)
T ss_pred cCCCeEEEEECccccc
Confidence 4899999999999654
No 385
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=29.14 E-value=48 Score=24.55 Aligned_cols=42 Identities=24% Similarity=0.240 Sum_probs=25.7
Q ss_pred CCcEEEEecCCC--CCCcccC-HHHHHHHHhcCCcEEEeccCCCC
Q 032955 26 NIPIVLCGNKVD--VKNRQVK-AKQVTFHRKKNLQYYEISAKSNY 67 (130)
Q Consensus 26 ~~piilv~NK~D--l~~~~v~-~~~~~~~~~~~~~~~e~Sak~~~ 67 (130)
..|+++|+|+.| +....-. .....++...+..++.+||+-..
T Consensus 195 ~KP~i~v~N~~e~d~~~~~~~~~~~~~~~~~~~~~~i~~sa~~E~ 239 (274)
T cd01900 195 AKPVLYVANVSEDDLANGNNKVLKVREIAAKEGAEVIPISAKIEA 239 (274)
T ss_pred cCCceeecccCHHHhccccHHHHHHHHHHhcCCCeEEEeeHHHHH
Confidence 579999999998 3211000 11234445567789999986443
No 386
>cd01028 TOPRIM_TopoIA TOPRIM_TopoIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IA family of DNA topoisomerases (TopoIA). This subgroup contains proteins similar to the Type I DNA topoisomerases: E. coli topisomerases I and III, eukaryotic topoisomerase III and, ATP-dependent reverse gyrase found in archaea and thermophilic bacteria. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA. These enzymes cleave one strand of the DNA duplex, covalently link to the 5' phosphoryl end of the DNA break and allow the other strand of the duplex to pass through the gap. Reverse gyrase is also able to insert positive supercoils in the presence of ATP and negative supercoils in the presence of AMPPNP. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general b
Probab=29.03 E-value=84 Score=20.47 Aligned_cols=51 Identities=8% Similarity=0.036 Sum_probs=30.2
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHHHh--cCCcEEEeccCCCCChHHHHHH
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRK--KNLQYYEISAKSNYNFEKPFLY 75 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~--~~~~~~e~Sak~~~~v~~lf~~ 75 (130)
.+.-.|++++=.|.++..+..+...++.. ..+.=+..|+.|...|...|..
T Consensus 89 ~~~d~iiiAtD~DrEGE~I~~~i~~~~~~~~~~v~R~~fsslT~~~I~~A~~n 141 (142)
T cd01028 89 KKADEIVLATDPDREGELIAWEILEVLKCDNKPVKRAWFSEITPKAIREAFKN 141 (142)
T ss_pred hcCCEEEEcCCCCcchHHHHHHHHHHhCCCCCCeEEEEEccCCHHHHHHHHhC
Confidence 34567777877776554433333344433 1233467788888887777754
No 387
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=28.88 E-value=65 Score=28.29 Aligned_cols=31 Identities=29% Similarity=0.191 Sum_probs=27.2
Q ss_pred CCcEEEeccCCCCChHHHHHHHHHHHhcCCC
Q 032955 55 NLQYYEISAKSNYNFEKPFLYLARKLAGDPN 85 (130)
Q Consensus 55 ~~~~~e~Sak~~~~v~~lf~~l~~~i~~~~~ 85 (130)
+++++|||+..+.||+-+|..|+..+.+...
T Consensus 3 ~l~~vetss~~nvnve~~f~tl~~l~~ksr~ 33 (1100)
T KOG4271|consen 3 NLPVVETSSVKNVNVEYLFGTLVQLCDKSRK 33 (1100)
T ss_pred CCCceeecccccccHHHHHHHHHHHHHhhcc
Confidence 5788999999999999999999998876544
No 388
>KOG4542 consensus Predicted membrane protein [Function unknown]
Probab=27.88 E-value=29 Score=21.14 Aligned_cols=7 Identities=71% Similarity=1.370 Sum_probs=3.5
Q ss_pred CCCCCCc
Q 032955 122 PDDDDDA 128 (130)
Q Consensus 122 ~~~~~~~ 128 (130)
|+|||||
T Consensus 89 P~DdDDD 95 (96)
T KOG4542|consen 89 PEDDDDD 95 (96)
T ss_pred CCCCCCC
Confidence 5555543
No 389
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=26.65 E-value=1.2e+02 Score=22.25 Aligned_cols=42 Identities=10% Similarity=-0.028 Sum_probs=26.1
Q ss_pred cEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCChHHHH
Q 032955 28 PIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF 73 (130)
Q Consensus 28 piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf 73 (130)
+.-+|.||.|...+. ......+...+.|+..++ +|.+++++.
T Consensus 219 ~~g~IlTKlDe~~~~--G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 219 LTGIILTKLDGTAKG--GIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCEEEEEccCCCCCc--cHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 346778999864321 123344556678877776 888887664
No 390
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=26.50 E-value=38 Score=28.79 Aligned_cols=14 Identities=50% Similarity=0.700 Sum_probs=12.6
Q ss_pred CCCcEEEEecCCCC
Q 032955 25 ENIPIVLCGNKVDV 38 (130)
Q Consensus 25 ~~~piilv~NK~Dl 38 (130)
.+.|+++|.||+|.
T Consensus 248 ~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 248 NRLPIVVVINKVDR 261 (971)
T ss_pred ccCcEEEEEehhHH
Confidence 48999999999995
No 391
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=26.24 E-value=2.2e+02 Score=19.59 Aligned_cols=59 Identities=14% Similarity=0.066 Sum_probs=41.6
Q ss_pred HHHhCCCCcEEEEecCCCCCC-cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHH
Q 032955 20 LCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 78 (130)
Q Consensus 20 ~~~~~~~~piilv~NK~Dl~~-~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~ 78 (130)
++....+.-++++-|-+-+.+ ......+..+-++.|++++.-|.+...+-.++....-+
T Consensus 73 ~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpVlRHs~kKP~ct~E~~~y~~~ 132 (190)
T KOG2961|consen 73 CKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPVLRHSVKKPACTAEEVEYHFG 132 (190)
T ss_pred HHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCceEeecccCCCccHHHHHHHhC
Confidence 333346788889998887754 22223355666789999999999998888877766554
No 392
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=26.17 E-value=88 Score=19.94 Aligned_cols=37 Identities=11% Similarity=0.177 Sum_probs=24.6
Q ss_pred CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEecc
Q 032955 25 ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISA 63 (130)
Q Consensus 25 ~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sa 63 (130)
.+.|++++|.-+...+ ...+..+++...+++++.+-.
T Consensus 11 A~rP~il~G~g~~~~~--a~~~l~~lae~~~~Pv~~t~~ 47 (137)
T PF00205_consen 11 AKRPVILAGRGARRSG--AAEELRELAEKLGIPVATTPM 47 (137)
T ss_dssp -SSEEEEE-HHHHHTT--CHHHHHHHHHHHTSEEEEEGG
T ss_pred CCCEEEEEcCCcChhh--HHHHHHHHHHHHCCCEEecCc
Confidence 4789999998775321 123467889999999876653
No 393
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.00 E-value=33 Score=25.75 Aligned_cols=13 Identities=46% Similarity=0.943 Sum_probs=11.9
Q ss_pred CCcEEEEecCCCC
Q 032955 26 NIPIVLCGNKVDV 38 (130)
Q Consensus 26 ~~piilv~NK~Dl 38 (130)
.+|+++||.|.|.
T Consensus 190 P~PV~IVgsKYDv 202 (363)
T KOG3929|consen 190 PVPVVIVGSKYDV 202 (363)
T ss_pred CCceEEeccchhh
Confidence 6899999999995
No 394
>cd03361 TOPRIM_TopoIA_RevGyr TopoIA_RevGyr : The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to the ATP-dependent reverse gyrase found in archaea and thermophilic bacteria. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving one strand of the DNA duplex, covalently linking to the 5' phosphoryl end of the DNA break and, allowing the other strand of the duplex to pass through the gap. Reverse gyrase is also able to insert positive supercoils in the presence of ATP and negative supercoils in the presence of AMPPNP. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=25.10 E-value=1.1e+02 Score=20.87 Aligned_cols=59 Identities=12% Similarity=0.063 Sum_probs=32.2
Q ss_pred HHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhc--CCcEEEeccCCCCChHHHHH
Q 032955 16 WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK--NLQYYEISAKSNYNFEKPFL 74 (130)
Q Consensus 16 ~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~--~~~~~e~Sak~~~~v~~lf~ 74 (130)
.+..+++...++-.|++++=.|.++..+..+...++... .+.-+..|+.|...|.+.|.
T Consensus 108 ~~~~l~~l~~~~~~iiiatD~drEGe~I~~~i~~~~~~~~~~v~R~~fs~it~~~I~~a~~ 168 (170)
T cd03361 108 TLEALRELALEVDEVLIATDPDTEGEKIAWDVYLALRPYNKNIKRAEFHEVTRRAILEALR 168 (170)
T ss_pred HHHHHHHHHhhCCEEEEecCCCccHHHHHHHHHHHhccCCCCeEEEEEecCCHHHHHHHHh
Confidence 333344444456677777777765433333333333321 23456777777777766664
No 395
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=24.17 E-value=3.9e+02 Score=21.68 Aligned_cols=55 Identities=11% Similarity=0.176 Sum_probs=32.6
Q ss_pred HHHHhH-HHHHHHHHHhCCCCcEEEEecCCCCCCcccCHH-HHHHHHhcCCcEEEeccCC
Q 032955 8 LTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKS 65 (130)
Q Consensus 8 ~s~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~-~~~~~~~~~~~~~e~Sak~ 65 (130)
+++... .+-+.+++.. +.|+|++.|-.+=.... ... ..++...++.+++.+++..
T Consensus 163 e~Y~eAEervI~ELk~i--gKPFvillNs~~P~s~e-t~~L~~eL~ekY~vpVlpvnc~~ 219 (492)
T PF09547_consen 163 ENYVEAEERVIEELKEI--GKPFVILLNSTKPYSEE-TQELAEELEEKYDVPVLPVNCEQ 219 (492)
T ss_pred HHHHHHHHHHHHHHHHh--CCCEEEEEeCCCCCCHH-HHHHHHHHHHHhCCcEEEeehHH
Confidence 344443 3355666553 88999999988632111 112 3355567788888877643
No 396
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=23.91 E-value=1.1e+02 Score=24.45 Aligned_cols=49 Identities=18% Similarity=0.128 Sum_probs=31.2
Q ss_pred CCcEEEEecCCCCCCcccCH--------HHHHHHHhcC------CcEEEeccCCCCChHHHHH
Q 032955 26 NIPIVLCGNKVDVKNRQVKA--------KQVTFHRKKN------LQYYEISAKSNYNFEKPFL 74 (130)
Q Consensus 26 ~~piilv~NK~Dl~~~~v~~--------~~~~~~~~~~------~~~~e~Sak~~~~v~~lf~ 74 (130)
-...|++.||.|-+.-..+. ....+....| ..|+.+|..+|.++.+...
T Consensus 217 v~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 217 VKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred cceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 34678899999965422221 1122333333 3499999999999987654
No 397
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=22.96 E-value=1.3e+02 Score=23.61 Aligned_cols=60 Identities=15% Similarity=0.225 Sum_probs=39.4
Q ss_pred HHHhCCCCcEEEEecCCCCC-----C---------cccCHHHHHHHHhcCCcEEEeccCCCCChHHHHHHHHHHH
Q 032955 20 LCRVCENIPIVLCGNKVDVK-----N---------RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 20 ~~~~~~~~piilv~NK~Dl~-----~---------~~v~~~~~~~~~~~~~~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
+.++...-..++|||..|.. + -.++.+..++|++.++|++.+| .+-.-|..+........
T Consensus 108 i~rY~~~g~LlIVGnR~~iq~lAL~~~~AVLvTGGF~~s~evi~lAne~~lPvlsts-YDTFTVAtmIN~Al~n~ 181 (432)
T COG4109 108 ILRYLDPGGLLIVGNREDIQLLALENGNAVLVTGGFDVSDEVIKLANEKGLPVLSTS-YDTFTVATMINKALSNQ 181 (432)
T ss_pred HHhhcCCCceEEEecHHHHHHHHHhcCCeEEEeCCCCccHHHHHhhcccCCceEEec-ccceeHHHHHHHHHHHh
Confidence 44444566789999999841 1 2235567789999999988765 44455666665555433
No 398
>PHA02763 hypothetical protein; Provisional
Probab=22.85 E-value=1.2e+02 Score=18.61 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=14.3
Q ss_pred HHHHhHHHHHHHHHHhC
Q 032955 8 LTYKNVPTWHRDLCRVC 24 (130)
Q Consensus 8 ~s~~~~~~~~~~~~~~~ 24 (130)
..|++++.|+.+.++..
T Consensus 65 SGFe~VEeWl~eArrLh 81 (102)
T PHA02763 65 SGFENVEEWLNEARRLH 81 (102)
T ss_pred cchhhHHHHHHHHHHHh
Confidence 45999999999988864
No 399
>PF01939 DUF91: Protein of unknown function DUF91; InterPro: IPR002793 The function of these prokaryotic proteins is unknown. Computational analysis suggests that they may form a restriction endonuclease-like fold, similar to that found in a variety of endonucleases and DNA repair enzymes [].; PDB: 2VLD_A.
Probab=21.98 E-value=2.9e+02 Score=19.98 Aligned_cols=50 Identities=14% Similarity=0.202 Sum_probs=31.5
Q ss_pred cHHHHHhHHHHHHHHHHhC--CCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEec
Q 032955 6 ARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEIS 62 (130)
Q Consensus 6 ~~~s~~~~~~~~~~~~~~~--~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~S 62 (130)
+.+...++..|+..+.+.. ..+.-|+|+..+ +..+..++...|+.|+.++
T Consensus 160 ~~~aV~QL~rY~~~l~~~~~~~~VRGilvA~~i-------~~~a~~ll~~~glef~~ld 211 (228)
T PF01939_consen 160 DRDAVEQLLRYVELLKRDPGLEPVRGILVAPSI-------TPQARELLEDRGLEFVELD 211 (228)
T ss_dssp -HHHHHHHHHHHHHHHHHH--S-EEEEEEES-B--------HHHHHHHHHHT-EEEE--
T ss_pred CHHHHHHHHHHHHHHhhccCCCceeEEEECCCC-------CHHHHHHHHHcCCEEEEec
Confidence 3456777777777776643 356677877776 4456788899999999887
No 400
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=21.74 E-value=4e+02 Score=22.17 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=22.6
Q ss_pred CcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEEeccCCCCCh
Q 032955 27 IPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 69 (130)
Q Consensus 27 ~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~Sak~~~~v 69 (130)
.+.-+|.||.|...+. ..........++++..++ +|.+|
T Consensus 485 ~~~gvILTKlDEt~~l--G~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 485 KPQGVVLTKLDETGRF--GSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred CCeEEEEecCcCccch--hHHHHHHHHhCCCEEEEe--CCCCc
Confidence 4567888999863211 123445556666655554 56665
No 401
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=21.29 E-value=50 Score=25.40 Aligned_cols=24 Identities=17% Similarity=0.025 Sum_probs=17.7
Q ss_pred cEEEeccCCCCChHHHHHHHHHHH
Q 032955 57 QYYEISAKSNYNFEKPFLYLARKL 80 (130)
Q Consensus 57 ~~~e~Sak~~~~v~~lf~~l~~~i 80 (130)
.+..|+|.+..++..+|..+...|
T Consensus 366 ~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 366 YVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHH
T ss_pred EEEEeeecccHHHHHHHHHhcCcC
Confidence 456788888888888888776543
No 402
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=20.99 E-value=4.5e+02 Score=21.20 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=35.2
Q ss_pred CeecCcHHHHHhHHHHHHHHHHhCCCCcEEEEecCCCCCCcccCHHHHHHHHhcCCcEEE----------eccCCCCChH
Q 032955 1 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE----------ISAKSNYNFE 70 (130)
Q Consensus 1 V~d~~~~~s~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e----------~Sak~~~~v~ 70 (130)
++|+++..+ ..+...++.++...+++|+|. ||-.+ .+....+.+.|..++. ++-.++.|+.
T Consensus 242 ~~D~a~g~~-~~~~~~i~~i~~~~~~~~vi~-g~~~t-------~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~ 312 (475)
T TIGR01303 242 VIDTAHGHQ-VKMISAIKAVRALDLGVPIVA-GNVVS-------AEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRP 312 (475)
T ss_pred EEeCCCCCc-HHHHHHHHHHHHHCCCCeEEE-eccCC-------HHHHHHHHHhCCCEEEECCcCCccccCccccCCCCc
Confidence 356666544 333444455555556777665 77664 3433444567777666 4456666655
Q ss_pred HH
Q 032955 71 KP 72 (130)
Q Consensus 71 ~l 72 (130)
.+
T Consensus 313 ~~ 314 (475)
T TIGR01303 313 QF 314 (475)
T ss_pred hH
Confidence 43
No 403
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=20.58 E-value=82 Score=26.42 Aligned_cols=27 Identities=15% Similarity=-0.070 Sum_probs=23.9
Q ss_pred CcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955 56 LQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 56 ~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
+++|..||+++.||..+++.|+..+..
T Consensus 254 ~PV~~gSa~~~~Gv~~LLd~I~~~lPs 280 (689)
T TIGR00484 254 FPVLCGSAFKNKGVQLLLDAVVDYLPS 280 (689)
T ss_pred EEEEeccccCCccHHHHHHHHHHHCCC
Confidence 567888999999999999999998865
No 404
>PRK00007 elongation factor G; Reviewed
Probab=20.55 E-value=84 Score=26.42 Aligned_cols=27 Identities=15% Similarity=-0.054 Sum_probs=23.7
Q ss_pred CcEEEeccCCCCChHHHHHHHHHHHhc
Q 032955 56 LQYYEISAKSNYNFEKPFLYLARKLAG 82 (130)
Q Consensus 56 ~~~~e~Sak~~~~v~~lf~~l~~~i~~ 82 (130)
+++|..||.++.||..+++.++..+..
T Consensus 255 ~Pv~~gSa~~~~Gv~~LLd~I~~~lPs 281 (693)
T PRK00007 255 VPVLCGSAFKNKGVQPLLDAVVDYLPS 281 (693)
T ss_pred EEEEecccccCcCHHHHHHHHHHHCCC
Confidence 568888999999999999999998764
No 405
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=20.29 E-value=4e+02 Score=20.32 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCCCc-EEEEecCCCCCCcccCHHHHHHHHhcCCcEEEe----------------ccCCCCChHHHHHH
Q 032955 13 VPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEI----------------SAKSNYNFEKPFLY 75 (130)
Q Consensus 13 ~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~v~~~~~~~~~~~~~~~~e~----------------Sak~~~~v~~lf~~ 75 (130)
+.+++..+.+...+++ +-+|.||.|..+ ....++...+++++.. -...+..+.+.|..
T Consensus 193 v~kai~~~~~lg~~~~i~GlViNr~d~~~-----~ie~~ae~lgi~vLg~IP~D~~V~~a~~~g~~~~~p~s~~a~~f~~ 267 (329)
T cd02033 193 VCNAVEYFRKLGGNVGVAGMVINKDDGTG-----EAQAFAAHAGIPILAAIPADEELRRKSAAYQIVGRPGTTWGPLFEQ 267 (329)
T ss_pred HHHHHHHHHHhCCCCCceEEEEeCcCCcc-----hHHHHHHHhCCCEEEECCCCHHHHHHHHcCCeecCCCCHHHHHHHH
Confidence 4555565555432333 568999998632 2345555555443211 01123346677888
Q ss_pred HHHHHhc
Q 032955 76 LARKLAG 82 (130)
Q Consensus 76 l~~~i~~ 82 (130)
|++.+..
T Consensus 268 LA~~I~~ 274 (329)
T cd02033 268 LATNVAE 274 (329)
T ss_pred HHHHHHH
Confidence 8877765
Done!