Query 032956
Match_columns 130
No_of_seqs 139 out of 1062
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 08:01:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032956.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032956hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03024 Putative EG45-like do 100.0 6.9E-38 1.5E-42 223.1 13.3 122 6-129 4-125 (125)
2 PLN00193 expansin-A; Provision 100.0 9.5E-31 2.1E-35 205.4 14.0 128 1-130 1-156 (256)
3 PLN03023 Expansin-like B1; Pro 100.0 2.8E-29 6E-34 196.3 12.8 103 20-130 22-139 (247)
4 PLN00050 expansin A; Provision 100.0 2.1E-29 4.5E-34 197.1 11.4 105 21-130 23-148 (247)
5 smart00837 DPBB_1 Rare lipopro 99.9 3.6E-24 7.7E-29 144.1 7.2 74 50-127 1-87 (87)
6 PF03330 DPBB_1: Rare lipoprot 99.9 2.6E-23 5.7E-28 136.4 6.8 76 50-127 1-78 (78)
7 COG4305 Endoglucanase C-termin 99.6 2.9E-14 6.3E-19 106.6 10.2 94 24-130 31-130 (232)
8 TIGR00413 rlpA rare lipoprotei 99.3 1.8E-11 3.8E-16 93.7 10.7 88 26-130 1-91 (208)
9 PF00967 Barwin: Barwin family 99.3 1.3E-12 2.9E-17 91.2 2.9 58 60-130 56-117 (119)
10 COG0797 RlpA Lipoproteins [Cel 99.3 3.5E-11 7.6E-16 93.4 10.4 93 21-130 80-175 (233)
11 PRK10672 rare lipoprotein A; P 99.1 2.1E-09 4.5E-14 88.3 11.8 87 25-128 80-169 (361)
12 PF07249 Cerato-platanin: Cera 98.8 5.3E-08 1.1E-12 69.0 8.8 65 49-130 44-112 (119)
13 PF02015 Glyco_hydro_45: Glyco 94.7 0.046 1E-06 42.0 4.0 40 62-109 82-122 (201)
14 PF07172 GRP: Glycine rich pro 75.1 2.8 6.1E-05 28.4 2.4 13 1-13 1-13 (95)
15 PRK15209 long polar fimbrial p 66.3 7.3 0.00016 28.4 3.1 40 1-41 1-40 (174)
16 PF04202 Mfp-3: Foot protein 3 65.4 7.1 0.00015 25.0 2.4 29 3-35 4-32 (71)
17 PRK15300 fimbrial protein StiA 64.6 5.1 0.00011 29.5 2.0 39 1-40 1-42 (179)
18 PRK15262 putative fimbrial pro 57.4 12 0.00026 28.3 2.9 37 3-40 5-41 (197)
19 COG5216 Uncharacterized conser 56.4 5.1 0.00011 25.2 0.6 33 56-102 19-51 (67)
20 PRK15241 putative fimbrial pro 55.1 16 0.00034 27.6 3.3 39 1-40 1-39 (188)
21 PF15240 Pro-rich: Proline-ric 52.4 11 0.00024 28.5 2.0 28 7-34 2-29 (179)
22 PRK15307 major fimbrial protei 51.9 19 0.00041 27.1 3.3 39 1-40 1-42 (201)
23 PRK15289 lpfA fimbrial protein 51.1 21 0.00045 26.5 3.3 20 21-41 21-40 (190)
24 PF08194 DIM: DIM protein; In 48.2 19 0.00041 20.3 2.0 19 12-30 10-28 (36)
25 PRK11657 dsbG disulfide isomer 46.4 35 0.00076 26.7 4.1 36 86-129 117-154 (251)
26 PF13956 Ibs_toxin: Toxin Ibs, 42.5 12 0.00026 18.0 0.5 14 5-18 2-15 (19)
27 PRK15205 long polar fimbrial p 42.2 29 0.00063 25.4 2.9 40 1-41 1-44 (176)
28 PRK15239 putative fimbrial pro 42.1 28 0.00062 26.2 2.9 19 22-41 21-39 (197)
29 TIGR02645 ARCH_P_rylase putati 41.4 1.1E+02 0.0023 26.8 6.6 52 61-125 26-78 (493)
30 PF00879 Defensin_propep: Defe 40.0 29 0.00062 21.1 2.1 24 5-28 3-26 (52)
31 KOG2923 Uncharacterized conser 38.8 12 0.00025 23.9 0.2 38 62-113 25-64 (67)
32 COG1930 CbiN ABC-type cobalt t 37.2 43 0.00094 22.8 2.8 13 27-40 27-39 (97)
33 PRK09733 putative fimbrial pro 36.8 43 0.00094 24.5 3.1 19 22-41 22-40 (181)
34 PRK15187 fimbrial protein BcfA 36.2 46 0.001 24.6 3.2 40 1-41 1-46 (180)
35 PRK15194 type-1 fimbrial prote 34.1 56 0.0012 24.0 3.4 16 25-41 32-47 (185)
36 PF13453 zf-TFIIB: Transcripti 33.6 60 0.0013 18.0 2.7 22 92-115 17-38 (41)
37 PHA02118 hypothetical protein 32.5 39 0.00085 26.0 2.3 30 1-30 1-30 (202)
38 PRK15306 putative fimbrial pro 32.2 31 0.00067 25.9 1.7 40 1-41 1-44 (190)
39 PF06107 DUF951: Bacterial pro 31.8 1.2E+02 0.0027 18.7 4.0 19 96-115 33-51 (57)
40 TIGR01653 lactococcin_972 bact 31.3 1.7E+02 0.0036 19.8 5.1 43 1-44 1-49 (92)
41 cd03020 DsbA_DsbC_DsbG DsbA fa 29.7 1.2E+02 0.0027 22.1 4.6 16 86-102 77-93 (197)
42 KOG4063 Major epididymal secre 29.6 57 0.0012 24.2 2.6 19 1-19 1-19 (158)
43 PRK15190 fimbrial protein BcfE 29.3 61 0.0013 23.8 2.9 40 1-41 1-42 (181)
44 PRK11372 lysozyme inhibitor; P 26.3 68 0.0015 22.1 2.5 15 4-18 2-16 (109)
45 PRK08061 rpsN 30S ribosomal pr 26.2 48 0.001 20.7 1.5 38 89-127 16-61 (61)
46 PF15284 PAGK: Phage-encoded v 24.9 77 0.0017 19.9 2.2 14 4-17 6-19 (61)
47 PF06170 DUF983: Protein of un 24.4 23 0.00049 23.5 -0.2 11 91-102 5-15 (86)
48 COG5510 Predicted small secret 23.9 99 0.0022 18.1 2.4 15 4-18 4-18 (44)
49 COG3539 FimA P pilus assembly 22.5 78 0.0017 22.9 2.3 39 1-40 1-41 (184)
50 TIGR01165 cbiN cobalt transpor 22.1 83 0.0018 21.3 2.2 16 1-16 1-16 (91)
51 PRK07718 fliL flagellar basal 22.1 86 0.0019 22.3 2.4 18 1-18 1-18 (142)
52 PRK15252 putative fimbrial-lik 22.1 56 0.0012 27.3 1.6 31 1-33 1-31 (344)
53 PF13719 zinc_ribbon_5: zinc-r 21.4 75 0.0016 17.4 1.6 15 96-111 4-18 (37)
54 PRK10002 outer membrane protei 21.2 1.3E+02 0.0028 24.5 3.6 7 27-33 32-38 (362)
55 PF02591 DUF164: Putative zinc 21.2 1.9E+02 0.0041 17.0 3.5 29 86-117 13-42 (56)
56 TIGR03327 AMP_phos AMP phospho 21.1 3.8E+02 0.0083 23.6 6.5 52 61-125 27-79 (500)
57 cd03019 DsbA_DsbA DsbA family, 21.1 1.2E+02 0.0026 21.2 3.0 16 86-102 15-31 (178)
58 PF13462 Thioredoxin_4: Thiore 20.5 37 0.00079 23.5 0.2 41 86-130 12-54 (162)
59 PRK15214 fimbrial protein PefA 20.3 1.4E+02 0.003 22.2 3.3 15 26-41 23-37 (172)
No 1
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=100.00 E-value=6.9e-38 Score=223.10 Aligned_cols=122 Identities=43% Similarity=0.922 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHhhccCceeeEEEEeCCCCCCCCcCCccCCCceEEEecccccCCCCcCCCEEEEEEccCCCCCCCCCCC
Q 032956 6 KILMMACLVLCLISTAYAAQGNAVYYDPPYTKSACYQNQDHGTMVTGVSDALWDGGRACGRRYKVQCVRGANTAPHPCHD 85 (130)
Q Consensus 6 ~~~~~~~~~~~~~~~a~~~~G~aT~Y~~~~~~gAC~~~~~~~~~~aAls~~~~~~g~~CG~c~~v~~~~~~~~~p~~C~~ 85 (130)
++||++.+++.|.+++....|+||||++ .++||||++.+++.++||+|+.+|++|+.||+||||+|.+...+++.+|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~G~AT~Y~~-~~~gAC~~~~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~- 81 (125)
T PLN03024 4 RILIFSTVLVFLFSVSYATPGIATFYTS-YTPSACYRGTSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCT- 81 (125)
T ss_pred eeHHHHHHHHHHhhhhcccceEEEEeCC-CCCccccCCCCCCCEeEEeCHHHcCCCcccCceEEEEECCCCcccccccc-
Confidence 4566777799999999999999999996 57899987778899999999999999999999999999764434467899
Q ss_pred CCeEEEEEeeCCCCCCCCceEcCHHHHHhhccCCCcEEEEEEEE
Q 032956 86 GASVEVEVVDYCRQPCNGVLNLSKDAFAVIADTVAGKVQVEYNP 129 (130)
Q Consensus 86 g~sv~v~V~D~Cp~~C~~~lDLS~~AF~~la~~~~G~i~v~w~~ 129 (130)
+++|+|+|+|+||.+|+.|||||++||++||+++.|+++|+|++
T Consensus 82 gksV~V~VtD~CP~~C~~~~DLS~~AF~~iA~~~aG~v~V~y~~ 125 (125)
T PLN03024 82 GKSVTVKIVDHCPSGCASTLDLSREAFAQIANPVAGIINIDYIP 125 (125)
T ss_pred CCeEEEEEEcCCCCCCCCceEcCHHHHHHhcCccCCEEEEEEeC
Confidence 99999999999995588999999999999999999999999975
No 2
>PLN00193 expansin-A; Provisional
Probab=99.97 E-value=9.5e-31 Score=205.44 Aligned_cols=128 Identities=26% Similarity=0.499 Sum_probs=102.8
Q ss_pred CchHHHHHHHHHHHHHHh-------hccCceeeEEEEeCCCCC----CCCc-CCcc---CCCceEEEecccccCCCCcCC
Q 032956 1 MRIQMKILMMACLVLCLI-------STAYAAQGNAVYYDPPYT----KSAC-YQNQ---DHGTMVTGVSDALWDGGRACG 65 (130)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~-------~~a~~~~G~aT~Y~~~~~----~gAC-~~~~---~~~~~~aAls~~~~~~g~~CG 65 (130)
|.+.+.-|.+++.+++.+ +.+.|.+++||||+.+++ +||| |++. +.+.++||+|+.+|++|..||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CG 80 (256)
T PLN00193 1 MSKSLLGLAILLQFCCYLFINVNAFTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCG 80 (256)
T ss_pred CchhhHHHHHHHHHHHHHHhhccCcCCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCcccc
Confidence 555544444444444433 233799999999997654 6999 7764 468899999999999999999
Q ss_pred CEEEEEEccCCCCCCCCCCCCCeEEEEEeeCCCCC----------CC---CceEcCHHHHHhhccCCCcEEEEEEEEC
Q 032956 66 RRYKVQCVRGANTAPHPCHDGASVEVEVVDYCRQP----------CN---GVLNLSKDAFAVIADTVAGKVQVEYNPV 130 (130)
Q Consensus 66 ~c~~v~~~~~~~~~p~~C~~g~sv~v~V~D~Cp~~----------C~---~~lDLS~~AF~~la~~~~G~i~v~w~~V 130 (130)
+||||+|... ..|++|.+|++|+|+|||+||.+ |. .|||||..||.+||....|+++|+||+|
T Consensus 81 aCyev~C~~~--~~~~~C~~g~sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRV 156 (256)
T PLN00193 81 QCYRIMCDYQ--ADSRWCIKGASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRV 156 (256)
T ss_pred CeEEEECCCC--CCCccccCCCeEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEe
Confidence 9999999532 13678976789999999999942 85 7999999999999999999999999997
No 3
>PLN03023 Expansin-like B1; Provisional
Probab=99.96 E-value=2.8e-29 Score=196.30 Aligned_cols=103 Identities=34% Similarity=0.580 Sum_probs=91.3
Q ss_pred ccCceeeEEEEeCCCCC----CCCc-CCcc---CCCceEEEecccccCCCCcCCCEEEEEEccCCCCCCCCCCCCCeEEE
Q 032956 20 TAYAAQGNAVYYDPPYT----KSAC-YQNQ---DHGTMVTGVSDALWDGGRACGRRYKVQCVRGANTAPHPCHDGASVEV 91 (130)
Q Consensus 20 ~a~~~~G~aT~Y~~~~~----~gAC-~~~~---~~~~~~aAls~~~~~~g~~CG~c~~v~~~~~~~~~p~~C~~g~sv~v 91 (130)
.+.|.+++||||+++++ +||| |++. .++..+||+| .+|++|..||+||||+|.+ |++|. +++|+|
T Consensus 22 ~~~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~-----~~~C~-~~~v~V 94 (247)
T PLN03023 22 SQDFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKA-----PNLCS-DDGVNV 94 (247)
T ss_pred cCCcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCC-----CCccC-CCCeEE
Confidence 35899999999999873 8899 7775 3578899998 9999999999999999964 67898 679999
Q ss_pred EEeeCCCCCCCCceEcCHHHHHhhccC-------CCcEEEEEEEEC
Q 032956 92 EVVDYCRQPCNGVLNLSKDAFAVIADT-------VAGKVQVEYNPV 130 (130)
Q Consensus 92 ~V~D~Cp~~C~~~lDLS~~AF~~la~~-------~~G~i~v~w~~V 130 (130)
+|||.|| ++..|||||.+||.+||.+ ..|+|+|+||||
T Consensus 95 ~iTd~~~-~~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRV 139 (247)
T PLN03023 95 VVTDYGE-GDKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRI 139 (247)
T ss_pred EEEeCCC-CCCCccccCHHHHHHHhCccccchhccCcEEEeEEEEE
Confidence 9999999 7679999999999999973 579999999997
No 4
>PLN00050 expansin A; Provisional
Probab=99.96 E-value=2.1e-29 Score=197.06 Aligned_cols=105 Identities=30% Similarity=0.551 Sum_probs=92.7
Q ss_pred cCceeeEEEEeCCCCC----CCCc-CCcc---CCCceEEEecccccCCCCcCCCEEEEEEccCCCCCCCCCCCCCeEEEE
Q 032956 21 AYAAQGNAVYYDPPYT----KSAC-YQNQ---DHGTMVTGVSDALWDGGRACGRRYKVQCVRGANTAPHPCHDGASVEVE 92 (130)
Q Consensus 21 a~~~~G~aT~Y~~~~~----~gAC-~~~~---~~~~~~aAls~~~~~~g~~CG~c~~v~~~~~~~~~p~~C~~g~sv~v~ 92 (130)
..|..++||||+.+++ +||| |++. +.+.++||+|+.+|++|..||+||||+|.+. +.+|. +++|+|+
T Consensus 23 ~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~----~~~C~-~gsV~V~ 97 (247)
T PLN00050 23 SGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVND----NIWCL-PGSIIIT 97 (247)
T ss_pred CCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCC----CcccC-CCcEEEE
Confidence 4799999999998754 6999 7774 4688999999999999999999999999642 45788 5599999
Q ss_pred EeeCCCC----------CCC---CceEcCHHHHHhhccCCCcEEEEEEEEC
Q 032956 93 VVDYCRQ----------PCN---GVLNLSKDAFAVIADTVAGKVQVEYNPV 130 (130)
Q Consensus 93 V~D~Cp~----------~C~---~~lDLS~~AF~~la~~~~G~i~v~w~~V 130 (130)
|||+||. +|. .|||||..||.+||..+.|+|+|+||+|
T Consensus 98 itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRV 148 (247)
T PLN00050 98 ATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRV 148 (247)
T ss_pred EecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEe
Confidence 9999994 184 8999999999999999999999999997
No 5
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.90 E-value=3.6e-24 Score=144.09 Aligned_cols=74 Identities=38% Similarity=0.772 Sum_probs=66.4
Q ss_pred EEEecccccCCCCcCCCEEEEEEccCCCCCCCCCCCCCeEEEEEeeCCCCC----------CC---CceEcCHHHHHhhc
Q 032956 50 VTGVSDALWDGGRACGRRYKVQCVRGANTAPHPCHDGASVEVEVVDYCRQP----------CN---GVLNLSKDAFAVIA 116 (130)
Q Consensus 50 ~aAls~~~~~~g~~CG~c~~v~~~~~~~~~p~~C~~g~sv~v~V~D~Cp~~----------C~---~~lDLS~~AF~~la 116 (130)
+||+|+.+|++|..||+||||+|.+ .|.+|.++++|+|+|||+||.+ |. .|||||..||.+||
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~----~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA 76 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVD----SPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIA 76 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCC----CCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHh
Confidence 4899999999999999999999954 3668886789999999999942 64 79999999999999
Q ss_pred cCCCcEEEEEE
Q 032956 117 DTVAGKVQVEY 127 (130)
Q Consensus 117 ~~~~G~i~v~w 127 (130)
.++.|+|+|+|
T Consensus 77 ~~~~Gvi~v~y 87 (87)
T smart00837 77 QYKAGIVPVKY 87 (87)
T ss_pred hhcCCEEeeEC
Confidence 99999999997
No 6
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.89 E-value=2.6e-23 Score=136.44 Aligned_cols=76 Identities=41% Similarity=0.723 Sum_probs=61.2
Q ss_pred EEEecccccCCCCcCCCEEEEEEccCCCCCCCCCCCC-CeEEEEEeeCCCCCCC-CceEcCHHHHHhhccCCCcEEEEEE
Q 032956 50 VTGVSDALWDGGRACGRRYKVQCVRGANTAPHPCHDG-ASVEVEVVDYCRQPCN-GVLNLSKDAFAVIADTVAGKVQVEY 127 (130)
Q Consensus 50 ~aAls~~~~~~g~~CG~c~~v~~~~~~~~~p~~C~~g-~sv~v~V~D~Cp~~C~-~~lDLS~~AF~~la~~~~G~i~v~w 127 (130)
+||++..+|++|..||+|+++++.......+. |..+ ++|+|+|+|+|| +|. +|||||+.||++|++++.|+++|+|
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~-~~~~~ksV~v~V~D~Cp-~~~~~~lDLS~~aF~~la~~~~G~i~V~w 78 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGT-CKVGNKSVTVTVVDRCP-GCPPNHLDLSPAAFKALADPDAGVIPVEW 78 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT---BESEECEEEEEEEEE-T-TSSSSEEEEEHHHHHHTBSTTCSSEEEEE
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccce-EEecCCeEEEEEEccCC-CCcCCEEEeCHHHHHHhCCCCceEEEEEC
Confidence 58999999999999999999999543321122 6622 999999999999 899 9999999999999999999999999
No 7
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.56 E-value=2.9e-14 Score=106.62 Aligned_cols=94 Identities=27% Similarity=0.360 Sum_probs=83.1
Q ss_pred eeeEEEEeCCCCCCCCc-CCccCCCceEEEecccccCCC----CcCCCEEEEEEccCCCCCCCCCCCCCeEEEEEeeCCC
Q 032956 24 AQGNAVYYDPPYTKSAC-YQNQDHGTMVTGVSDALWDGG----RACGRRYKVQCVRGANTAPHPCHDGASVEVEVVDYCR 98 (130)
Q Consensus 24 ~~G~aT~Y~~~~~~gAC-~~~~~~~~~~aAls~~~~~~g----~~CG~c~~v~~~~~~~~~p~~C~~g~sv~v~V~D~Cp 98 (130)
+.|-|||-+..+.+||= ..+++.+..+.|++..+.|-| +.-|..++|.+ |.++.+|.|+|+-|
T Consensus 31 f~G~ATyTgsGYsGGAflLDPI~sd~eITAlNPaqlNlGGipAAmAGaYLrVqG------------PKG~TTVYVTDlYP 98 (232)
T COG4305 31 FEGYATYTGSGYSGGAFLLDPIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQG------------PKGKTTVYVTDLYP 98 (232)
T ss_pred cceeEEEecccccCceEEecCcCCcceeeecCHHHcccCCchhhhccceEEEEC------------CCCceEEEEecccc
Confidence 68999999888889998 677888889999998887754 57899999986 46788999999999
Q ss_pred CCCC-CceEcCHHHHHhhccCCCcEEEEEEEEC
Q 032956 99 QPCN-GVLNLSKDAFAVIADTVAGKVQVEYNPV 130 (130)
Q Consensus 99 ~~C~-~~lDLS~~AF~~la~~~~G~i~v~w~~V 130 (130)
+-. +.||||+.||.+|++...|+|+|+||.|
T Consensus 99 -egasGaLDLSpNAFakIGnm~qGrIpvqWrvv 130 (232)
T COG4305 99 -EGASGALDLSPNAFAKIGNMKQGRIPVQWRVV 130 (232)
T ss_pred -cccccccccChHHHhhhcchhcCccceeEEEe
Confidence 555 9999999999999999999999999976
No 8
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=99.33 E-value=1.8e-11 Score=93.66 Aligned_cols=88 Identities=22% Similarity=0.218 Sum_probs=74.5
Q ss_pred eEEEEeCCCCC--CCCcCCccCCCceEEEecccccCCCCcCCCEEEEEEccCCCCCCCCCCCCCeEEEEEeeCCCCCCC-
Q 032956 26 GNAVYYDPPYT--KSACYQNQDHGTMVTGVSDALWDGGRACGRRYKVQCVRGANTAPHPCHDGASVEVEVVDYCRQPCN- 102 (130)
Q Consensus 26 G~aT~Y~~~~~--~gAC~~~~~~~~~~aAls~~~~~~g~~CG~c~~v~~~~~~~~~p~~C~~g~sv~v~V~D~Cp~~C~- 102 (130)
|.|+||++... ..|.|..++...++||..+ ...|..++||+.. | |++|+|+|+|++| -=.
T Consensus 1 G~ASwYg~~f~G~~TAnGe~y~~~~~tAAHkt------LPlgT~V~VtNl~---------n-grsviVrVnDRGP-f~~g 63 (208)
T TIGR00413 1 GLASWYGPKFHGRKTANGEVYNMKALTAAHKT------LPFNTYVKVTNLH---------N-NRSVIVRINDRGP-FSDD 63 (208)
T ss_pred CEEeEeCCCCCCCcCCCCeecCCCcccccccc------CCCCCEEEEEECC---------C-CCEEEEEEeCCCC-CCCC
Confidence 67999998543 6777777777889999775 3669999999864 5 9999999999999 544
Q ss_pred CceEcCHHHHHhhccCCCcEEEEEEEEC
Q 032956 103 GVLNLSKDAFAVIADTVAGKVQVEYNPV 130 (130)
Q Consensus 103 ~~lDLS~~AF~~la~~~~G~i~v~w~~V 130 (130)
.-||||+.|+++|+..+.|+.+|+.+.+
T Consensus 64 RiIDLS~aAA~~Lg~~~~G~a~V~vevl 91 (208)
T TIGR00413 64 RIIDLSHAAAREIGLISRGVGQVRIEVL 91 (208)
T ss_pred CEEECCHHHHHHcCCCcCceEEEEEEEE
Confidence 7899999999999999999999888753
No 9
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=99.30 E-value=1.3e-12 Score=91.19 Aligned_cols=58 Identities=33% Similarity=0.563 Sum_probs=43.8
Q ss_pred CCCcCCCEEEEEEccCCCCCCCCCCCCCeEEEEEeeCCCCCCCCceEcCHHHHHhhcc----CCCcEEEEEEEEC
Q 032956 60 GGRACGRRYKVQCVRGANTAPHPCHDGASVEVEVVDYCRQPCNGVLNLSKDAFAVIAD----TVAGKVQVEYNPV 130 (130)
Q Consensus 60 ~g~~CG~c~~v~~~~~~~~~p~~C~~g~sv~v~V~D~Cp~~C~~~lDLS~~AF~~la~----~~~G~i~v~w~~V 130 (130)
+...||+|++||++. + |.+++|+|||+|+ .+ +|||.+.+|++|-. ...|.+.|+|++|
T Consensus 56 gq~~CGkClrVTNt~---------t-ga~~~~RIVDqCs-nG--GLDld~~vF~~iDtdG~G~~~Ghl~V~y~fV 117 (119)
T PF00967_consen 56 GQDSCGKCLRVTNTA---------T-GAQVTVRIVDQCS-NG--GLDLDPTVFNQIDTDGQGYAQGHLIVDYEFV 117 (119)
T ss_dssp SGGGTT-EEEEE-TT---------T---EEEEEEEEE-S-SS--SEES-SSSHHHH-SSSHHHHHTEEEEEEEEE
T ss_pred CcccccceEEEEecC---------C-CcEEEEEEEEcCC-CC--CcccChhHHhhhccCCcccccceEEEEEEEE
Confidence 346899999999864 4 8999999999999 44 89999999999953 3579999999987
No 10
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=99.28 E-value=3.5e-11 Score=93.37 Aligned_cols=93 Identities=19% Similarity=0.245 Sum_probs=76.1
Q ss_pred cCceeeEEEEeCCCCC--CCCcCCccCCCceEEEecccccCCCCcCCCEEEEEEccCCCCCCCCCCCCCeEEEEEeeCCC
Q 032956 21 AYAAQGNAVYYDPPYT--KSACYQNQDHGTMVTGVSDALWDGGRACGRRYKVQCVRGANTAPHPCHDGASVEVEVVDYCR 98 (130)
Q Consensus 21 a~~~~G~aT~Y~~~~~--~gAC~~~~~~~~~~aAls~~~~~~g~~CG~c~~v~~~~~~~~~p~~C~~g~sv~v~V~D~Cp 98 (130)
.....|.|+|||.... ..|=|..++.+.++||..+--| |..++||+.+ | |++|+|+|.|++|
T Consensus 80 ~~~~~G~ASwYg~~fhgr~TA~Ge~~n~~~~tAAH~TLP~------~t~v~VtNl~---------N-grsvvVRINDRGP 143 (233)
T COG0797 80 SFEQVGYASWYGEKFHGRKTANGERYDMNALTAAHKTLPL------PTYVRVTNLD---------N-GRSVVVRINDRGP 143 (233)
T ss_pred cccccceeeeeccccCCccccCcccccccccccccccCCC------CCEEEEEEcc---------C-CcEEEEEEeCCCC
Confidence 3446899999997654 3444555688999999887555 8999999976 6 9999999999999
Q ss_pred CCCC-CceEcCHHHHHhhccCCCcEEEEEEEEC
Q 032956 99 QPCN-GVLNLSKDAFAVIADTVAGKVQVEYNPV 130 (130)
Q Consensus 99 ~~C~-~~lDLS~~AF~~la~~~~G~i~v~w~~V 130 (130)
-=. ..||||..|+++|+..+.|+.+|..+++
T Consensus 144 -f~~gRiIDlS~aAA~~l~~~~~G~a~V~i~~l 175 (233)
T COG0797 144 -FVSGRIIDLSKAAADKLGMIRSGVAKVRIEVL 175 (233)
T ss_pred -CCCCcEeEcCHHHHHHhCCccCceEEEEEEEe
Confidence 333 7899999999999999999988877764
No 11
>PRK10672 rare lipoprotein A; Provisional
Probab=99.07 E-value=2.1e-09 Score=88.27 Aligned_cols=87 Identities=18% Similarity=0.175 Sum_probs=72.4
Q ss_pred eeEEEEeCCCCC--CCCcCCccCCCceEEEecccccCCCCcCCCEEEEEEccCCCCCCCCCCCCCeEEEEEeeCCCCCCC
Q 032956 25 QGNAVYYDPPYT--KSACYQNQDHGTMVTGVSDALWDGGRACGRRYKVQCVRGANTAPHPCHDGASVEVEVVDYCRQPCN 102 (130)
Q Consensus 25 ~G~aT~Y~~~~~--~gAC~~~~~~~~~~aAls~~~~~~g~~CG~c~~v~~~~~~~~~p~~C~~g~sv~v~V~D~Cp~~C~ 102 (130)
.|.|+|||.... ..|.|..++...++||..+- ..|..++||+.. | ||+|+|+|.|++| -=.
T Consensus 80 ~G~ASwYg~~f~G~~TA~Ge~~~~~~~tAAH~tL------Plps~vrVtNl~---------n-grsvvVrVnDRGP-~~~ 142 (361)
T PRK10672 80 AGLAAIYDAEAGSNLTASGERFDPNALTAAHPTL------PIPSYVRVTNLA---------N-GRMIVVRINDRGP-YGP 142 (361)
T ss_pred EEEEEEeCCccCCCcCcCceeecCCcCeeeccCC------CCCCEEEEEECC---------C-CcEEEEEEeCCCC-CCC
Confidence 899999998654 45556667888999998763 459999999965 6 9999999999999 445
Q ss_pred -CceEcCHHHHHhhccCCCcEEEEEEE
Q 032956 103 -GVLNLSKDAFAVIADTVAGKVQVEYN 128 (130)
Q Consensus 103 -~~lDLS~~AF~~la~~~~G~i~v~w~ 128 (130)
.-||||+.|+++|+....+++.|+.-
T Consensus 143 gRiiDLS~aAA~~Lg~~~~~~V~ve~i 169 (361)
T PRK10672 143 GRVIDLSRAAADRLNTSNNTKVRIDPI 169 (361)
T ss_pred CCeeEcCHHHHHHhCCCCCceEEEEEE
Confidence 88999999999999877788887753
No 12
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.79 E-value=5.3e-08 Score=68.96 Aligned_cols=65 Identities=29% Similarity=0.541 Sum_probs=48.4
Q ss_pred eEEEecc-cccCCCCcCCCEEEEEEccCCCCCCCCCCCCCeEEEEEeeCCCCCCCCceEcCHHHHHhhcc---CCCcEEE
Q 032956 49 MVTGVSD-ALWDGGRACGRRYKVQCVRGANTAPHPCHDGASVEVEVVDYCRQPCNGVLNLSKDAFAVIAD---TVAGKVQ 124 (130)
Q Consensus 49 ~~aAls~-~~~~~g~~CG~c~~v~~~~~~~~~p~~C~~g~sv~v~V~D~Cp~~C~~~lDLS~~AF~~la~---~~~G~i~ 124 (130)
.+.+.+. .-| |++.||.|+||++ + |++|.+..+|.=+ ..|+++.+||+.|.+ .+.|+|+
T Consensus 44 ~IGg~~~V~gW-nS~~CGtC~~lty-----------~-g~si~vlaID~a~----~gfnis~~A~n~LT~g~a~~lG~V~ 106 (119)
T PF07249_consen 44 YIGGAPAVAGW-NSPNCGTCWKLTY-----------N-GRSIYVLAIDHAG----GGFNISLDAMNDLTNGQAVELGRVD 106 (119)
T ss_dssp SEEEETT--ST-T-TTTT-EEEEEE-----------T-TEEEEEEEEEE-S----SSEEE-HHHHHHHHTS-CCCC-EEE
T ss_pred eeccccccccC-CCCCCCCeEEEEE-----------C-CeEEEEEEEecCC----CcccchHHHHHHhcCCcccceeEEE
Confidence 4455443 457 4589999999998 4 8999999999876 579999999999974 5789999
Q ss_pred EEEEEC
Q 032956 125 VEYNPV 130 (130)
Q Consensus 125 v~w~~V 130 (130)
++|++|
T Consensus 107 a~~~qV 112 (119)
T PF07249_consen 107 ATYTQV 112 (119)
T ss_dssp -EEEEE
T ss_pred EEEEEc
Confidence 999986
No 13
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=94.70 E-value=0.046 Score=41.97 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=28.2
Q ss_pred CcCCCEEEEEEccCCCCCCCCCCCCCeEEEEEeeCCCCCCC-CceEcCH
Q 032956 62 RACGRRYKVQCVRGANTAPHPCHDGASVEVEVVDYCRQPCN-GVLNLSK 109 (130)
Q Consensus 62 ~~CG~c~~v~~~~~~~~~p~~C~~g~sv~v~V~D~Cp~~C~-~~lDLS~ 109 (130)
..|++||+++-+++. -.||+.+|+|++.-- .=. +||||.-
T Consensus 82 ~~Cc~Cy~LtFt~g~-------l~GKkmiVQ~tNtG~-dlg~n~FDl~i 122 (201)
T PF02015_consen 82 SWCCACYELTFTSGP-------LKGKKMIVQVTNTGG-DLGSNQFDLAI 122 (201)
T ss_dssp HHTT-EEEEEE-SST-------TTT-EEEEEEEEE-T-TTTTTEEEEE-
T ss_pred CcccceEEEEEcCCC-------cCCCEeEEEecccCC-CCCCCeEEEEe
Confidence 579999999998643 239999999999887 434 8999974
No 14
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=75.10 E-value=2.8 Score=28.42 Aligned_cols=13 Identities=23% Similarity=0.176 Sum_probs=6.8
Q ss_pred CchHHHHHHHHHH
Q 032956 1 MRIQMKILMMACL 13 (130)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (130)
|.-|.++|+.++|
T Consensus 1 MaSK~~llL~l~L 13 (95)
T PF07172_consen 1 MASKAFLLLGLLL 13 (95)
T ss_pred CchhHHHHHHHHH
Confidence 6655555555443
No 15
>PRK15209 long polar fimbrial protein LpfA; Provisional
Probab=66.29 E-value=7.3 Score=28.45 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=22.0
Q ss_pred CchHHHHHHHHHHHHHHhhccCceeeEEEEeCCCCCCCCcC
Q 032956 1 MRIQMKILMMACLVLCLISTAYAAQGNAVYYDPPYTKSACY 41 (130)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~a~~~~G~aT~Y~~~~~~gAC~ 41 (130)
||+.+..+++++++...+.+++...|+.+|.|.- -..+|-
T Consensus 1 Mkk~~~~~~~~~~~~~~a~aa~~~~g~I~f~G~I-~~~tC~ 40 (174)
T PRK15209 1 MKKVVFALSALALTSTSVFAAESGDGTVKFTGEI-VDAPCV 40 (174)
T ss_pred CchHHHHHHHHHHHhhhccccccCCcEEEEEEEE-EcCcce
Confidence 7754443333333322223344457899998863 366893
No 16
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=65.44 E-value=7.1 Score=25.00 Aligned_cols=29 Identities=24% Similarity=0.493 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHhhccCceeeEEEEeCCCC
Q 032956 3 IQMKILMMACLVLCLISTAYAAQGNAVYYDPPY 35 (130)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~a~~~~G~aT~Y~~~~ 35 (130)
+++..|++++|+.+++..+++ +-+|++.+
T Consensus 4 ~Si~VLlaLvLIg~fAVqSda----g~~y~p~y 32 (71)
T PF04202_consen 4 LSIAVLLALVLIGSFAVQSDA----GYYYYPGY 32 (71)
T ss_pred hhHHHHHHHHHHhhheeeecC----ccccCCCC
Confidence 455666777777777777766 34556544
No 17
>PRK15300 fimbrial protein StiA; Provisional
Probab=64.58 E-value=5.1 Score=29.52 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=21.5
Q ss_pred CchHHHHHHHHHHHHHHhhcc---CceeeEEEEeCCCCCCCCc
Q 032956 1 MRIQMKILMMACLVLCLISTA---YAAQGNAVYYDPPYTKSAC 40 (130)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~a---~~~~G~aT~Y~~~~~~gAC 40 (130)
||++|+.+++++.++++...+ ...+|+.+|.|.- -..+|
T Consensus 1 mk~~~~~~~~~~~~~~~~~~~~a~~~~~g~i~f~G~I-~~~tC 42 (179)
T PRK15300 1 MKLSLKTLTVALAAITLSPAALADTAKDGTVHITGLI-KQNAC 42 (179)
T ss_pred CceeehhHHHHHHHHHhCchhhhcccCCCEEEEEEEE-Ecccc
Confidence 777755544433322222222 2347889998863 46678
No 18
>PRK15262 putative fimbrial protein StaF; Provisional
Probab=57.43 E-value=12 Score=28.35 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHhhccCceeeEEEEeCCCCCCCCc
Q 032956 3 IQMKILMMACLVLCLISTAYAAQGNAVYYDPPYTKSAC 40 (130)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~a~~~~G~aT~Y~~~~~~gAC 40 (130)
+++++++++.|++++..+..+..|+.+|.|.- -...|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~a~~g~I~f~G~I-v~~tC 41 (197)
T PRK15262 5 LMKKIILFLGLLFALTSPPAYAGQDVDLTANI-KNSTC 41 (197)
T ss_pred HHHHHHHHHHHHHHhcccccccCCEEEEEEEE-EcCCc
Confidence 44555555666666666667888999998863 35688
No 19
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=56.36 E-value=5.1 Score=25.17 Aligned_cols=33 Identities=27% Similarity=0.579 Sum_probs=21.5
Q ss_pred cccCCCCcCCCEEEEEEccCCCCCCCCCCCCCeEEEEEeeCCCCCCC
Q 032956 56 ALWDGGRACGRRYKVQCVRGANTAPHPCHDGASVEVEVVDYCRQPCN 102 (130)
Q Consensus 56 ~~~~~g~~CG~c~~v~~~~~~~~~p~~C~~g~sv~v~V~D~Cp~~C~ 102 (130)
..|.-.-.||..++|.-.+-. + | .+|-+|| .|.
T Consensus 19 ~~ftyPCPCGDRFeIsLeDl~-------~-G-----E~VArCP-SCS 51 (67)
T COG5216 19 KTFTYPCPCGDRFEISLEDLR-------N-G-----EVVARCP-SCS 51 (67)
T ss_pred ceEEecCCCCCEeEEEHHHhh-------C-C-----ceEEEcC-Cce
Confidence 344445689999999864411 2 3 3556899 886
No 20
>PRK15241 putative fimbrial protein StaD; Provisional
Probab=55.14 E-value=16 Score=27.64 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=23.4
Q ss_pred CchHHHHHHHHHHHHHHhhccCceeeEEEEeCCCCCCCCc
Q 032956 1 MRIQMKILMMACLVLCLISTAYAAQGNAVYYDPPYTKSAC 40 (130)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~a~~~~G~aT~Y~~~~~~gAC 40 (130)
|++...+++++++.+++.+++.+..+..+|.|.- -...|
T Consensus 1 M~~~k~~~~~~~~~~~~~~~~~a~~~~V~f~G~v-va~~C 39 (188)
T PRK15241 1 MKRNKYLLAASVLAMIFPLTSQAEDINVDFTATV-LATTC 39 (188)
T ss_pred CcchHHHHHHHHHHHHhhhhhhccceEEEEEEEE-EecCc
Confidence 6653344444444444455556677889998752 36678
No 21
>PF15240 Pro-rich: Proline-rich
Probab=52.36 E-value=11 Score=28.53 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhccCceeeEEEEeCCC
Q 032956 7 ILMMACLVLCLISTAYAAQGNAVYYDPP 34 (130)
Q Consensus 7 ~~~~~~~~~~~~~~a~~~~G~aT~Y~~~ 34 (130)
|+|+|+++||.+|.|.-.+=+.++++..
T Consensus 2 LlVLLSvALLALSSAQ~~dEdv~~e~~~ 29 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQSTDEDVSQEESP 29 (179)
T ss_pred hhHHHHHHHHHhhhccccccccccccCc
Confidence 3455555555556665555566666553
No 22
>PRK15307 major fimbrial protein StkA; Provisional
Probab=51.85 E-value=19 Score=27.12 Aligned_cols=39 Identities=21% Similarity=0.189 Sum_probs=20.5
Q ss_pred CchHHHHHHHHHHHHHHhhcc---CceeeEEEEeCCCCCCCCc
Q 032956 1 MRIQMKILMMACLVLCLISTA---YAAQGNAVYYDPPYTKSAC 40 (130)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~a---~~~~G~aT~Y~~~~~~gAC 40 (130)
|+|+..++..++++++..+.+ +...|+.+|.|.- -...|
T Consensus 1 m~~~~~~l~~~~~~~~~~~~~~aa~~~~g~I~F~G~I-~~~tC 42 (201)
T PRK15307 1 MFLKKYGLAAAVAMTLSASSAMAADPDTGTITFHGLV-TNNTC 42 (201)
T ss_pred CchHHHHHHHHHHHHHhhhhhhcccCCCCEEEEEEEE-eccce
Confidence 776644433323322222222 2346899998863 46688
No 23
>PRK15289 lpfA fimbrial protein; Provisional
Probab=51.06 E-value=21 Score=26.49 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=13.9
Q ss_pred cCceeeEEEEeCCCCCCCCcC
Q 032956 21 AYAAQGNAVYYDPPYTKSACY 41 (130)
Q Consensus 21 a~~~~G~aT~Y~~~~~~gAC~ 41 (130)
+.+..|+.+|.|.- -..+|-
T Consensus 21 a~a~~G~I~f~G~I-~~~tC~ 40 (190)
T PRK15289 21 ALAEDGVVHFVGEI-VDTTCE 40 (190)
T ss_pred ccccCCEEEEEEEE-ecceeE
Confidence 44557899998863 367883
No 24
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=48.22 E-value=19 Score=20.26 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=9.3
Q ss_pred HHHHHHhhccCceeeEEEE
Q 032956 12 CLVLCLISTAYAAQGNAVY 30 (130)
Q Consensus 12 ~~~~~~~~~a~~~~G~aT~ 30 (130)
.+++.++++.....|+.+-
T Consensus 10 l~lLal~~a~~~~pG~ViI 28 (36)
T PF08194_consen 10 LLLLALAAAVPATPGNVII 28 (36)
T ss_pred HHHHHHHhcccCCCCeEEE
Confidence 3333344544455666554
No 25
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=46.38 E-value=35 Score=26.66 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=22.5
Q ss_pred CCeEEEEEee-CCCCCCCCceEcCHHHHHhhcc-CCCcEEEEEEEE
Q 032956 86 GASVEVEVVD-YCRQPCNGVLNLSKDAFAVIAD-TVAGKVQVEYNP 129 (130)
Q Consensus 86 g~sv~v~V~D-~Cp~~C~~~lDLS~~AF~~la~-~~~G~i~v~w~~ 129 (130)
++.+++..+| .|| -|. .+++.+.+ .+.|.+.|.|.+
T Consensus 117 ak~~I~vFtDp~Cp-yC~-------kl~~~l~~~~~~g~V~v~~ip 154 (251)
T PRK11657 117 APRIVYVFADPNCP-YCK-------QFWQQARPWVDSGKVQLRHIL 154 (251)
T ss_pred CCeEEEEEECCCCh-hHH-------HHHHHHHHHhhcCceEEEEEe
Confidence 5666777788 999 894 33344432 245767777654
No 26
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=42.46 E-value=12 Score=17.97 Aligned_cols=14 Identities=21% Similarity=0.548 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHh
Q 032956 5 MKILMMACLVLCLI 18 (130)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (130)
|++.|++++++++.
T Consensus 2 Mk~vIIlvvLLliS 15 (19)
T PF13956_consen 2 MKLVIILVVLLLIS 15 (19)
T ss_pred ceehHHHHHHHhcc
Confidence 34455544444433
No 27
>PRK15205 long polar fimbrial protein LpfE; Provisional
Probab=42.22 E-value=29 Score=25.38 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=21.7
Q ss_pred CchHHHHHHHHHHHHHHhhccC----ceeeEEEEeCCCCCCCCcC
Q 032956 1 MRIQMKILMMACLVLCLISTAY----AAQGNAVYYDPPYTKSACY 41 (130)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~a~----~~~G~aT~Y~~~~~~gAC~ 41 (130)
|+|+-.++.++.+++.+.+.+. ...|+.+|.|.- -...|-
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~f~G~I-~~~tC~ 44 (176)
T PRK15205 1 MKNKRALLPLALLLLTASGMAAPTDLGPAGDIHFTITI-KAKACE 44 (176)
T ss_pred CchHHHHHHHHHHhcchhhhcCCCcccCCeEEEEEEEE-Eeccce
Confidence 6766544444444332222222 246889998863 366883
No 28
>PRK15239 putative fimbrial protein StaA; Provisional
Probab=42.13 E-value=28 Score=26.21 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=13.9
Q ss_pred CceeeEEEEeCCCCCCCCcC
Q 032956 22 YAAQGNAVYYDPPYTKSACY 41 (130)
Q Consensus 22 ~~~~G~aT~Y~~~~~~gAC~ 41 (130)
.+..|+.+|.|.- -...|-
T Consensus 21 a~~~GtI~F~G~I-~d~tC~ 39 (197)
T PRK15239 21 AVEGGRINFEGLV-SAETCK 39 (197)
T ss_pred hccCCEEEEEEEE-eeceee
Confidence 4458999999863 467784
No 29
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=41.42 E-value=1.1e+02 Score=26.82 Aligned_cols=52 Identities=23% Similarity=0.187 Sum_probs=37.1
Q ss_pred CCcCCCEEEEEEccCCCCCCCCCCCCCeEEEEEeeCCCCCCC-CceEcCHHHHHhhccCCCcEEEE
Q 032956 61 GRACGRRYKVQCVRGANTAPHPCHDGASVEVEVVDYCRQPCN-GVLNLSKDAFAVIADTVAGKVQV 125 (130)
Q Consensus 61 g~~CG~c~~v~~~~~~~~~p~~C~~g~sv~v~V~D~Cp~~C~-~~lDLS~~AF~~la~~~~G~i~v 125 (130)
|-.=+..++|+. + ++++++.|++.=. -=. +.+-||..+|++|.-.+.-.+.|
T Consensus 26 g~~~~~rv~v~~-----------~-~~~~~a~~~~~~~-~~~~~~~gl~~~~~~~l~~~~g~~v~v 78 (493)
T TIGR02645 26 GFTPQDRVEVRI-----------G-GKSLIAILVGSDT-LVEMGEIGLSVSAVETFMAREGDIVTV 78 (493)
T ss_pred CCCcCCeEEEEe-----------C-CEEEEEEEecccc-cccCCeeeccHHHHHHcCCCCCCEEEE
Confidence 445588999986 4 7899998886422 122 78999999999996544444554
No 30
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=40.02 E-value=29 Score=21.10 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhccCceeeEE
Q 032956 5 MKILMMACLVLCLISTAYAAQGNA 28 (130)
Q Consensus 5 ~~~~~~~~~~~~~~~~a~~~~G~a 28 (130)
...++..++++.|-..|.+...++
T Consensus 3 TL~LLaAlLLlAlqaQAepl~~~~ 26 (52)
T PF00879_consen 3 TLALLAALLLLALQAQAEPLQERA 26 (52)
T ss_pred HHHHHHHHHHHHHHHhcccccccc
Confidence 555555666666666677664443
No 31
>KOG2923 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.83 E-value=12 Score=23.88 Aligned_cols=38 Identities=26% Similarity=0.555 Sum_probs=23.9
Q ss_pred CcCCCEEEEEEccCCCCCCCCCCCCCeEEEEEeeCCCCCCC--CceEcCHHHHH
Q 032956 62 RACGRRYKVQCVRGANTAPHPCHDGASVEVEVVDYCRQPCN--GVLNLSKDAFA 113 (130)
Q Consensus 62 ~~CG~c~~v~~~~~~~~~p~~C~~g~sv~v~V~D~Cp~~C~--~~lDLS~~AF~ 113 (130)
=.||..++|+-.+=. + |.. |-+|| +|. -.++-.++-|.
T Consensus 25 CpCGDrf~It~edL~-------~-ge~-----Va~Cp-sCSL~I~ViYd~edf~ 64 (67)
T KOG2923|consen 25 CPCGDRFQITLEDLE-------N-GED-----VARCP-SCSLIIRVIYDKEDFA 64 (67)
T ss_pred CCCCCeeeecHHHHh-------C-CCe-----eecCC-CceEEEEEEeCHHHhh
Confidence 479999999864311 2 443 35799 897 44555555544
No 32
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=37.24 E-value=43 Score=22.78 Aligned_cols=13 Identities=8% Similarity=-0.156 Sum_probs=7.3
Q ss_pred EEEEeCCCCCCCCc
Q 032956 27 NAVYYDPPYTKSAC 40 (130)
Q Consensus 27 ~aT~Y~~~~~~gAC 40 (130)
+.-+|++.+ +-||
T Consensus 27 ~~ge~gGaD-~~Ae 39 (97)
T COG1930 27 TDGEFGGAD-GEAE 39 (97)
T ss_pred ccccccCCc-chhh
Confidence 555677754 3444
No 33
>PRK09733 putative fimbrial protein; Provisional
Probab=36.80 E-value=43 Score=24.54 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=12.9
Q ss_pred CceeeEEEEeCCCCCCCCcC
Q 032956 22 YAAQGNAVYYDPPYTKSACY 41 (130)
Q Consensus 22 ~~~~G~aT~Y~~~~~~gAC~ 41 (130)
....|+.+|.|.- -..+|-
T Consensus 22 ~~~~G~i~f~G~I-~~~tC~ 40 (181)
T PRK09733 22 DEGHGIVKFKGEV-ISAPCS 40 (181)
T ss_pred hcCCCEEEEEEEE-Eeccee
Confidence 3347889998863 366883
No 34
>PRK15187 fimbrial protein BcfA; Provisional
Probab=36.23 E-value=46 Score=24.57 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=21.8
Q ss_pred CchHHHHHHHHHHHHHH-hhccC-----ceeeEEEEeCCCCCCCCcC
Q 032956 1 MRIQMKILMMACLVLCL-ISTAY-----AAQGNAVYYDPPYTKSACY 41 (130)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-~~~a~-----~~~G~aT~Y~~~~~~gAC~ 41 (130)
||+....+++.++++.+ .+++. ...|+.+|.|.-. ...|-
T Consensus 1 mk~~~~~~~~~~~~~~~~~~~~~a~~~~~~~G~I~f~G~iv-~~tC~ 46 (180)
T PRK15187 1 MKKPVLALMVSAIAFGGMLSTAQADTTTVTGGTVNFVGQVV-DAACS 46 (180)
T ss_pred CchhhHHHHHHHHHHHHHhhhhccccccccCCEEEEEEEEe-cccce
Confidence 77654444443333222 22332 4688999988643 56784
No 35
>PRK15194 type-1 fimbrial protein subunit A; Provisional
Probab=34.09 E-value=56 Score=24.02 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=11.4
Q ss_pred eeEEEEeCCCCCCCCcC
Q 032956 25 QGNAVYYDPPYTKSACY 41 (130)
Q Consensus 25 ~G~aT~Y~~~~~~gAC~ 41 (130)
.|+.+|.|.- -..+|-
T Consensus 32 ~G~I~f~G~I-~~~tC~ 47 (185)
T PRK15194 32 GGTIHFEGEL-VNAACS 47 (185)
T ss_pred ceEEEEEEEE-Eeccce
Confidence 5899998863 356783
No 36
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=33.58 E-value=60 Score=18.04 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=14.6
Q ss_pred EEeeCCCCCCCCceEcCHHHHHhh
Q 032956 92 EVVDYCRQPCNGVLNLSKDAFAVI 115 (130)
Q Consensus 92 ~V~D~Cp~~C~~~lDLS~~AF~~l 115 (130)
..+|.|| .|. ++=|...-|+++
T Consensus 17 ~~id~C~-~C~-G~W~d~~el~~~ 38 (41)
T PF13453_consen 17 VEIDVCP-SCG-GIWFDAGELEKL 38 (41)
T ss_pred EEEEECC-CCC-eEEccHHHHHHH
Confidence 5679999 886 344555666665
No 37
>PHA02118 hypothetical protein
Probab=32.46 E-value=39 Score=26.02 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=21.5
Q ss_pred CchHHHHHHHHHHHHHHhhccCceeeEEEE
Q 032956 1 MRIQMKILMMACLVLCLISTAYAAQGNAVY 30 (130)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~a~~~~G~aT~ 30 (130)
|.++|++.|+...+.+.++.......+++|
T Consensus 1 ~~~~~~l~imAaa~slALAaC~~~~~~~q~ 30 (202)
T PHA02118 1 MQKQLKMGIMAAFVSAALSGCGQANTDDTF 30 (202)
T ss_pred CchhHHHHHHHhHHHHHHhccCCccccccc
Confidence 788999988888877777666554444554
No 38
>PRK15306 putative fimbrial protein StkD; Provisional
Probab=32.16 E-value=31 Score=25.95 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=22.3
Q ss_pred CchHHHHHHHHHHHHHHhhcc----CceeeEEEEeCCCCCCCCcC
Q 032956 1 MRIQMKILMMACLVLCLISTA----YAAQGNAVYYDPPYTKSACY 41 (130)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~a----~~~~G~aT~Y~~~~~~gAC~ 41 (130)
|+..|..+.+.++.+++++.+ +...|+.+|.|.- -..+|-
T Consensus 1 ~~~~~~~~~~~~~~~~~~s~~~~aa~~~~g~I~F~G~I-v~~~C~ 44 (190)
T PRK15306 1 MKRNRLSLPIAALAVMAASGSALAANSTNLDVNFTATI-LETTCD 44 (190)
T ss_pred CccceeehHHHHHHHHHhchhhhhcccCCcEEEEEEEE-ecCCce
Confidence 565566664444443333322 2237899998863 366883
No 39
>PF06107 DUF951: Bacterial protein of unknown function (DUF951); InterPro: IPR009296 This family consists of several short hypothetical bacterial proteins of unknown function.
Probab=31.75 E-value=1.2e+02 Score=18.69 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=15.8
Q ss_pred CCCCCCCCceEcCHHHHHhh
Q 032956 96 YCRQPCNGVLNLSKDAFAVI 115 (130)
Q Consensus 96 ~Cp~~C~~~lDLS~~AF~~l 115 (130)
+|- +|...+-|++.-|++-
T Consensus 33 kC~-gCg~~imlpR~~feK~ 51 (57)
T PF06107_consen 33 KCL-GCGRQIMLPRSKFEKR 51 (57)
T ss_pred EEC-CCCCEEEEeHHHHHHH
Confidence 488 8988899999988863
No 40
>TIGR01653 lactococcin_972 bacteriocin, lactococcin 972 family. This model represents bacteriocins related to lactococcin 972. Members tend to be found in association with a seven transmembrane putative immunity protein.
Probab=31.30 E-value=1.7e+02 Score=19.77 Aligned_cols=43 Identities=14% Similarity=0.304 Sum_probs=21.9
Q ss_pred CchHHHHHHHHHHHHHHh-hccCc-----eeeEEEEeCCCCCCCCcCCcc
Q 032956 1 MRIQMKILMMACLVLCLI-STAYA-----AQGNAVYYDPPYTKSACYQNQ 44 (130)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~-~~a~~-----~~G~aT~Y~~~~~~gAC~~~~ 44 (130)
|+.+...+++++++|... .++.+ ..+-+||... .+.|.+|.+.
T Consensus 1 mkkk~~~~~~~~~il~~~~g~a~~~~~~~~~~Ggtw~~~-~G~g~~ySnY 49 (92)
T TIGR01653 1 MKKKVVASLVSTTILATLGGLAAQVEAAQSTQGGTWWKT-YGMGRHYSNY 49 (92)
T ss_pred CchhhHHHHHHHHHHhhhhhhheeecceEEecCcceEec-cCCCceeeee
Confidence 777765555555554443 22222 2333566543 3577786553
No 41
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=29.72 E-value=1.2e+02 Score=22.14 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=11.5
Q ss_pred CCeEEEEEee-CCCCCCC
Q 032956 86 GASVEVEVVD-YCRQPCN 102 (130)
Q Consensus 86 g~sv~v~V~D-~Cp~~C~ 102 (130)
++...+..+| .|| -|.
T Consensus 77 ~~~~i~~f~D~~Cp-~C~ 93 (197)
T cd03020 77 GKRVVYVFTDPDCP-YCR 93 (197)
T ss_pred CCEEEEEEECCCCc-cHH
Confidence 5666677777 788 774
No 42
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=29.65 E-value=57 Score=24.22 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=11.4
Q ss_pred CchHHHHHHHHHHHHHHhh
Q 032956 1 MRIQMKILMMACLVLCLIS 19 (130)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (130)
|.|+++.++++++++.|+.
T Consensus 1 m~ms~~~~v~l~alls~a~ 19 (158)
T KOG4063|consen 1 MMMSFLKTVILLALLSLAA 19 (158)
T ss_pred CchHHHHHHHHHHHHHHhh
Confidence 6666666666655555554
No 43
>PRK15190 fimbrial protein BcfE; Provisional
Probab=29.26 E-value=61 Score=23.80 Aligned_cols=40 Identities=23% Similarity=0.204 Sum_probs=20.2
Q ss_pred CchHHHHHHHHHHHHHHhhccCce--eeEEEEeCCCCCCCCcC
Q 032956 1 MRIQMKILMMACLVLCLISTAYAA--QGNAVYYDPPYTKSACY 41 (130)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~a~~~--~G~aT~Y~~~~~~gAC~ 41 (130)
|+++...++++.++++....+.+. .|+.+|.|.- -..+|-
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~a~a~~~~~~I~f~G~I-~~~tC~ 42 (181)
T PRK15190 1 MNRSHCALFAMGLMLCPQINASADDLAYNLEFTGTI-VAQTCD 42 (181)
T ss_pred CceeehHHHHHHHHHHHHHHhhccCceeEEEEEEEE-EeCcce
Confidence 554444333333333333223333 5788898863 366884
No 44
>PRK11372 lysozyme inhibitor; Provisional
Probab=26.30 E-value=68 Score=22.11 Aligned_cols=15 Identities=40% Similarity=0.700 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHh
Q 032956 4 QMKILMMACLVLCLI 18 (130)
Q Consensus 4 ~~~~~~~~~~~~~~~ 18 (130)
+|+.+++++++++|.
T Consensus 2 ~mk~ll~~~~~~lL~ 16 (109)
T PRK11372 2 SMKKLLIICLPVLLT 16 (109)
T ss_pred chHHHHHHHHHHHHH
Confidence 355555555555554
No 45
>PRK08061 rpsN 30S ribosomal protein S14; Reviewed
Probab=26.17 E-value=48 Score=20.73 Aligned_cols=38 Identities=18% Similarity=0.420 Sum_probs=29.6
Q ss_pred EEEEEeeCCCCCCC------CceEcCHHHHHhhcc--CCCcEEEEEE
Q 032956 89 VEVEVVDYCRQPCN------GVLNLSKDAFAVIAD--TVAGKVQVEY 127 (130)
Q Consensus 89 v~v~V~D~Cp~~C~------~~lDLS~~AF~~la~--~~~G~i~v~w 127 (130)
-.+.+.++|. -|. ..+.|+.-.|.++|. +-+|+..-+|
T Consensus 16 ~~~r~~nRC~-~tGR~rgvir~fgl~R~~FRe~A~~G~ipGv~KasW 61 (61)
T PRK08061 16 FKVRAYTRCE-RCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW 61 (61)
T ss_pred CCcccceeee-cCCCCcceeccCCccHHHHHHHHHcCcCCCeeeccC
Confidence 3478889999 775 568899999999984 4578776665
No 46
>PF15284 PAGK: Phage-encoded virulence factor
Probab=24.89 E-value=77 Score=19.87 Aligned_cols=14 Identities=7% Similarity=0.000 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 032956 4 QMKILMMACLVLCL 17 (130)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (130)
++++.+++++.+.+
T Consensus 6 sifL~l~~~LsA~~ 19 (61)
T PF15284_consen 6 SIFLALVFILSAAG 19 (61)
T ss_pred HHHHHHHHHHHHhh
Confidence 34444434433333
No 47
>PF06170 DUF983: Protein of unknown function (DUF983); InterPro: IPR009325 This family consists of several bacterial proteins of unknown function.
Probab=24.45 E-value=23 Score=23.53 Aligned_cols=11 Identities=27% Similarity=0.770 Sum_probs=8.9
Q ss_pred EEEeeCCCCCCC
Q 032956 91 VEVVDYCRQPCN 102 (130)
Q Consensus 91 v~V~D~Cp~~C~ 102 (130)
.+++|+|+ .|.
T Consensus 5 Lk~~~~C~-~CG 15 (86)
T PF06170_consen 5 LKVAPRCP-HCG 15 (86)
T ss_pred ccCCCccc-ccC
Confidence 46789999 895
No 48
>COG5510 Predicted small secreted protein [Function unknown]
Probab=23.87 E-value=99 Score=18.10 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHh
Q 032956 4 QMKILMMACLVLCLI 18 (130)
Q Consensus 4 ~~~~~~~~~~~~~~~ 18 (130)
+..+++++++++.++
T Consensus 4 ~t~l~i~~vll~s~l 18 (44)
T COG5510 4 KTILLIALVLLASTL 18 (44)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455544444443
No 49
>COG3539 FimA P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.52 E-value=78 Score=22.88 Aligned_cols=39 Identities=15% Similarity=0.252 Sum_probs=20.9
Q ss_pred CchHHHHHHHHHHHHHHhhccCc--eeeEEEEeCCCCCCCCc
Q 032956 1 MRIQMKILMMACLVLCLISTAYA--AQGNAVYYDPPYTKSAC 40 (130)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~a~~--~~G~aT~Y~~~~~~gAC 40 (130)
|++++.++.++.++++......+ ..|..+|.|. --...|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~f~G~-v~~~~C 41 (184)
T COG3539 1 MKNKKILAALATILALSSGAFAAAGPDGTITFSGT-VVDSTC 41 (184)
T ss_pred CcchhHHHHHHHHHHhcCccccccCCCCEEEEEEE-EEcccc
Confidence 55555544444443333322222 3688888886 346668
No 50
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=22.08 E-value=83 Score=21.27 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=8.0
Q ss_pred CchHHHHHHHHHHHHH
Q 032956 1 MRIQMKILMMACLVLC 16 (130)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (130)
|.|+..++++++++++
T Consensus 1 m~~~~~~~ll~~v~~l 16 (91)
T TIGR01165 1 MSMKKTIWLLAAVAAL 16 (91)
T ss_pred CCcchhHHHHHHHHHH
Confidence 6666555444433333
No 51
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=22.05 E-value=86 Score=22.35 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=11.5
Q ss_pred CchHHHHHHHHHHHHHHh
Q 032956 1 MRIQMKILMMACLVLCLI 18 (130)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (130)
|+.++.++++++++++++
T Consensus 1 ~kkkl~~i~~i~l~~l~~ 18 (142)
T PRK07718 1 MKNKLIKIMLIILIVIAL 18 (142)
T ss_pred CcchHHHHHHHHHHHHHH
Confidence 777887776655544444
No 52
>PRK15252 putative fimbrial-like adhesin protein StcD; Provisional
Probab=22.05 E-value=56 Score=27.25 Aligned_cols=31 Identities=10% Similarity=0.224 Sum_probs=14.8
Q ss_pred CchHHHHHHHHHHHHHHhhccCceeeEEEEeCC
Q 032956 1 MRIQMKILMMACLVLCLISTAYAAQGNAVYYDP 33 (130)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~a~~~~G~aT~Y~~ 33 (130)
|+|+.+++++ +.+..-...+.-.|..|++++
T Consensus 1 ~~~~~~l~~~--~~~~s~~~yA~C~~~~t~~~~ 31 (344)
T PRK15252 1 MEIRIMLFIV--MMMVMPVSYAACYSELSVQHN 31 (344)
T ss_pred CchhHHHHHH--HHHHcccchheecCCcccccC
Confidence 6655444443 332222333444566666665
No 53
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=21.39 E-value=75 Score=17.40 Aligned_cols=15 Identities=20% Similarity=0.583 Sum_probs=11.6
Q ss_pred CCCCCCCCceEcCHHH
Q 032956 96 YCRQPCNGVLNLSKDA 111 (130)
Q Consensus 96 ~Cp~~C~~~lDLS~~A 111 (130)
+|| .|...+.++.+.
T Consensus 4 ~CP-~C~~~f~v~~~~ 18 (37)
T PF13719_consen 4 TCP-NCQTRFRVPDDK 18 (37)
T ss_pred ECC-CCCceEEcCHHH
Confidence 588 898778888754
No 54
>PRK10002 outer membrane protein F; Provisional
Probab=21.24 E-value=1.3e+02 Score=24.53 Aligned_cols=7 Identities=14% Similarity=0.254 Sum_probs=3.9
Q ss_pred EEEEeCC
Q 032956 27 NAVYYDP 33 (130)
Q Consensus 27 ~aT~Y~~ 33 (130)
..|-||.
T Consensus 32 sVtLYG~ 38 (362)
T PRK10002 32 KVDLYGK 38 (362)
T ss_pred EEEEeCE
Confidence 4566664
No 55
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=21.21 E-value=1.9e+02 Score=17.02 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=21.3
Q ss_pred CCeEEEEEee-CCCCCCCCceEcCHHHHHhhcc
Q 032956 86 GASVEVEVVD-YCRQPCNGVLNLSKDAFAVIAD 117 (130)
Q Consensus 86 g~sv~v~V~D-~Cp~~C~~~lDLS~~AF~~la~ 117 (130)
++...|.|.+ .|- +| ++-|++..+++|..
T Consensus 13 ~g~~va~v~~~~C~-gC--~~~l~~~~~~~i~~ 42 (56)
T PF02591_consen 13 GGVAVARVEGGTCS-GC--HMELPPQELNEIRK 42 (56)
T ss_pred CCcEEEEeeCCccC-CC--CEEcCHHHHHHHHc
Confidence 3455566654 677 77 89999999999943
No 56
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=21.13 E-value=3.8e+02 Score=23.56 Aligned_cols=52 Identities=23% Similarity=0.266 Sum_probs=34.5
Q ss_pred CCcCCCEEEEEEccCCCCCCCCCCCCCeEEEEEeeCCCCCCC-CceEcCHHHHHhhccCCCcEEEE
Q 032956 61 GRACGRRYKVQCVRGANTAPHPCHDGASVEVEVVDYCRQPCN-GVLNLSKDAFAVIADTVAGKVQV 125 (130)
Q Consensus 61 g~~CG~c~~v~~~~~~~~~p~~C~~g~sv~v~V~D~Cp~~C~-~~lDLS~~AF~~la~~~~G~i~v 125 (130)
|-.=+..++|+. + ++++++++.=. ..-=. +.+-||..+|++|.-.+.-.+.|
T Consensus 27 g~~~~~rv~v~~-----------~-~~~~~a~~~~~-~~~~~~g~~gls~~~~~~l~~~~g~~v~v 79 (500)
T TIGR03327 27 GVHPGDRVRIES-----------G-GKSVVGIVDST-DTLVEKGEIGLSHEVLEELGISEGEVVEV 79 (500)
T ss_pred CCCCCCeEEEEe-----------C-CEEEEEEEEcc-cccccCCeeeccHHHHHHcCCCCCCEEEE
Confidence 444578899986 3 67777766433 21112 78999999999997554444554
No 57
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=21.05 E-value=1.2e+02 Score=21.22 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=11.8
Q ss_pred CCeEEEEEee-CCCCCCC
Q 032956 86 GASVEVEVVD-YCRQPCN 102 (130)
Q Consensus 86 g~sv~v~V~D-~Cp~~C~ 102 (130)
++...+...| .|| .|.
T Consensus 15 ~~~~i~~f~D~~Cp-~C~ 31 (178)
T cd03019 15 GKPEVIEFFSYGCP-HCY 31 (178)
T ss_pred CCcEEEEEECCCCc-chh
Confidence 5566666777 899 896
No 58
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=20.53 E-value=37 Score=23.49 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=23.0
Q ss_pred CCeEEEEEee-CCCCCCC-CceEcCHHHHHhhccCCCcEEEEEEEEC
Q 032956 86 GASVEVEVVD-YCRQPCN-GVLNLSKDAFAVIADTVAGKVQVEYNPV 130 (130)
Q Consensus 86 g~sv~v~V~D-~Cp~~C~-~~lDLS~~AF~~la~~~~G~i~v~w~~V 130 (130)
.+.+.+...| .|| .|. -+-.|. ...+++ .+.|++.+.++.+
T Consensus 12 a~~~v~~f~d~~Cp-~C~~~~~~~~-~~~~~~--i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 12 APITVTEFFDFQCP-HCAKFHEELE-KLLKKY--IDPGKVKFVFRPV 54 (162)
T ss_dssp TSEEEEEEE-TTSH-HHHHHHHHHH-HHHHHH--TTTTTEEEEEEES
T ss_pred CCeEEEEEECCCCH-hHHHHHHHHh-hhhhhc--cCCCceEEEEEEc
Confidence 4555556666 899 885 222222 222222 4678888888754
No 59
>PRK15214 fimbrial protein PefA; Provisional
Probab=20.34 E-value=1.4e+02 Score=22.18 Aligned_cols=15 Identities=7% Similarity=0.381 Sum_probs=11.2
Q ss_pred eEEEEeCCCCCCCCcC
Q 032956 26 GNAVYYDPPYTKSACY 41 (130)
Q Consensus 26 G~aT~Y~~~~~~gAC~ 41 (130)
|+.+|.|.- -..+|-
T Consensus 23 gtI~F~G~I-v~~tC~ 37 (172)
T PRK15214 23 NEVTFLGSV-SATTCD 37 (172)
T ss_pred cEEEEEEEE-EcCCce
Confidence 899998863 467893
Done!