BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032957
         (130 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
          Length = 309

 Score = 26.6 bits (57), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 58 SSPIDEPILKEALKEPVAFVGGMFAGLLRLDLND 91
          + P  E I++E ++E V    G+ AGLLRL  +D
Sbjct: 17 TCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHD 50


>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
           Thermophilus Hb8 With Psbdo
 pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
           Thermophilus Hb8 With Psbdo
 pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
           Different Lipoamide Dehydrogenase(e3s) From Thermus
           Thermophilus
 pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
           Different Lipoamide Dehydrogenase(e3s) From Thermus
           Thermophilus
          Length = 455

 Score = 26.2 bits (56), Expect = 5.2,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 64  PIL-KEALKEPVAFVGGMFAGLLRLDLNDDPLKDWVTRTVEAAGITEEEIKAE 115
           P+L  +A +E +A V  M  G   +D    P   +    + A G TEEE+KA+
Sbjct: 307 PMLAHKASEEGIAAVEHMVRGFGHVDYQAIPSVVYTHPEIAAVGYTEEELKAQ 359


>pdb|4GE3|A Chain A, Schizosaccharomyces Pombe Dj-1 T114v Mutant
 pdb|4GE3|B Chain B, Schizosaccharomyces Pombe Dj-1 T114v Mutant
 pdb|4GE3|C Chain C, Schizosaccharomyces Pombe Dj-1 T114v Mutant
 pdb|4GE3|D Chain D, Schizosaccharomyces Pombe Dj-1 T114v Mutant
          Length = 194

 Score = 25.8 bits (55), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 12/44 (27%), Positives = 24/44 (54%)

Query: 52  GVRACFSSPIDEPILKEALKEPVAFVGGMFAGLLRLDLNDDPLK 95
           G +   ++P  + ++KE  K+P  ++G + AG+L    +  P K
Sbjct: 85  GAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAGVLTAKTSGLPNK 128


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.132    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,775,927
Number of Sequences: 62578
Number of extensions: 87519
Number of successful extensions: 186
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 11
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)