BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032957
(130 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FZ89|Y1815_ARATH UPF0426 protein At1g28150, chloroplastic OS=Arabidopsis thaliana
GN=At1g28150 PE=1 SV=1
Length = 123
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/77 (72%), Positives = 67/77 (87%), Gaps = 2/77 (2%)
Query: 55 ACFSSPIDEPILKEALKEPVAFVGGMFAGLLRLDLNDDPLKDWVTRTVEAAGITEEEIKA 114
+CF+ P EPIL EALKEP+AF+GGMFAGLLRLDLN++PLKDWVTRTVEA+GITEEE+ A
Sbjct: 48 SCFNLP-QEPILSEALKEPIAFLGGMFAGLLRLDLNEEPLKDWVTRTVEASGITEEEVDA 106
Query: 115 EDSKS-DEEVPEQIEIE 130
+ S DE+ P+QIEIE
Sbjct: 107 DGVVSNDEDSPQQIEIE 123
>sp|P74786|Y294_SYNY3 UPF0426 protein ssl0294 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=ssl0294 PE=3 SV=1
Length = 70
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 63 EPILKEALKEPVAFVGGMFAGLLRLDLNDDPLKDWVTRTVEAAGITEEEIKAEDSKSDEE 122
+P+ +E ++P+AF GG +G+LRL L DDPLK W+ + G+T+ + + +
Sbjct: 7 KPVTRELCQQPIAFAGGFVSGVLRLKLTDDPLKKWLQK----QGVTDFSGADINQTAQDN 62
Query: 123 VPEQIEIE 130
P+ I+I+
Sbjct: 63 RPQSIDID 70
>sp|Q8YQ06|Y4034_NOSS1 UPF0426 protein asl4034 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=asl4034 PE=3 SV=1
Length = 72
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 61 IDE--PILKEALKEPVAFVGGMFAGLLRLDLNDDPLKDWVTRTVEAAGITEEEIKAEDSK 118
IDE PI K+ ++ P +F+GG +G+LRL+L DDP+K W+ + G+ D+
Sbjct: 3 IDELSPIFKQLVQHPASFLGGFASGVLRLNLADDPVKSWLDKQ---RGVNSYSFPVTDAH 59
Query: 119 SDEEV-PEQIEIE 130
+ + P+ I I+
Sbjct: 60 NGKASGPQSISID 72
>sp|Q54465|MERA_SHEPU Mercuric reductase OS=Shewanella putrefaciens GN=merA PE=3 SV=1
Length = 557
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 80 MFAGLLRLDLNDDPLKDWVTRTVEAAGITEEEIKAEDSKSDEEVPE 125
M G +LDL+ P + V G+TEE+ A+D ++D V E
Sbjct: 421 MTGGYAKLDLSTMPAVIFTDPQVATVGLTEEQANAQDIETDSRVLE 466
>sp|P52899|ODPA_CAEEL Probable pyruvate dehydrogenase E1 component subunit alpha,
mitochondrial OS=Caenorhabditis elegans GN=T05H10.6 PE=2
SV=1
Length = 397
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 92 DPLKDWVTRTVEAAGITEEEIKAEDSKSDEEVPEQIEI 129
DP+ + R + ++ TEEE+KA D + +EV E ++I
Sbjct: 309 DPITGFKDRIITSSLATEEELKAIDKEVRKEVDEALKI 346
>sp|P18767|NDVA_RHIME Beta-(1-->2)glucan export ATP-binding/permease protein NdvA
OS=Rhizobium meliloti (strain 1021) GN=ndvA PE=1 SV=2
Length = 585
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 72 EPVAFVGGMFAGLLRLDLNDDPLKDWVTRTVEAAGITEEEIKAEDSKSDEEVP 124
E +AF+G FA LL L D +K + T+ EA E+ + EDS D E P
Sbjct: 274 EVIAFIG--FANLLIGRL--DQMKAFATQIFEARAKLEDFFQLEDSVQDREEP 322
>sp|Q148W0|AT8B1_MOUSE Probable phospholipid-transporting ATPase IC OS=Mus musculus
GN=Atp8b1 PE=2 SV=2
Length = 1251
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 37 SSSLRLRSNNYRNKNGVRACFSSPIDEPIL 66
+S L R N RN+ GV A F+ P+ EP
Sbjct: 762 NSLLHTRMENQRNRGGVSAKFAPPVYEPFF 791
>sp|P45617|PT1_MYCCT Phosphoenolpyruvate-protein phosphotransferase OS=Mycoplasma
capricolum subsp. capricolum (strain California kid /
ATCC 27343 / NCTC 10154) GN=ptsI PE=3 SV=1
Length = 573
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 82 AGLLRLDLNDDPLKDWVTRTVEAAGITEE--EIKAEDSKSDEEVPEQIE 128
+G++ LDLNDD +K++ T+ + + E+ + K E S + +++ + IE
Sbjct: 225 SGIVELDLNDDDIKNYQTKVQQYIELKEQLKKFKDEPSLTKDKIKKLIE 273
>sp|Q9RT73|COAE_DEIRA Dephospho-CoA kinase OS=Deinococcus radiodurans (strain ATCC 13939
/ DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB
9279 / R1 / VKM B-1422) GN=coaE PE=3 SV=1
Length = 207
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 73 PVAFVGGMFAGLLRLDLNDDPLKDWVTRTVEAAGITEEEIKAEDSK 118
P+ F GG+ G+ + + D PL+ + R + G+T E+I A D++
Sbjct: 124 PLLFEGGLERGMDAVLVVDAPLELRLERALARGGLTREDILARDAR 169
>sp|Q8IUG5|MY18B_HUMAN Unconventional myosin-XVIIIb OS=Homo sapiens GN=MYO18B PE=1 SV=1
Length = 2567
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 54 RACFSSPIDEPILKEALKEPVAFVGGMFAGLLRLDLNDDPL 94
R C S +D+ + KEP+ F FA L+ L DP
Sbjct: 2384 RRCLESSVDDAGCPDLGKEPLVFQNRQFAHLMEEPLGSDPF 2424
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.128 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,079,116
Number of Sequences: 539616
Number of extensions: 2006954
Number of successful extensions: 6094
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 6069
Number of HSP's gapped (non-prelim): 35
length of query: 130
length of database: 191,569,459
effective HSP length: 96
effective length of query: 34
effective length of database: 139,766,323
effective search space: 4752054982
effective search space used: 4752054982
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)