Query 032957
Match_columns 130
No_of_seqs 46 out of 48
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 08:02:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032957.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032957hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09434 aminoimidazole ribosi 60.3 8.8 0.00019 29.7 2.7 39 75-113 252-292 (304)
2 PF15469 Sec5: Exocyst complex 58.7 13 0.00029 27.8 3.3 37 65-101 144-182 (182)
3 PF02486 Rep_trans: Replicatio 58.3 20 0.00044 26.6 4.2 70 32-105 49-160 (182)
4 PRK14741 spoVM stage V sporula 54.2 7.1 0.00015 23.2 1.0 12 75-86 10-21 (26)
5 cd01946 ribokinase_group_C Rib 47.7 13 0.00029 28.5 1.8 26 75-100 235-261 (277)
6 PF03070 TENA_THI-4: TENA/THI- 40.9 20 0.00043 26.5 1.8 34 62-101 4-37 (210)
7 PF12911 OppC_N: N-terminal TM 40.2 28 0.00061 21.3 2.2 21 64-84 7-27 (56)
8 cd01947 Guanosine_kinase_like 39.7 24 0.00051 26.7 2.1 28 75-106 229-256 (265)
9 PF04930 FUN14: FUN14 family; 38.6 25 0.00055 24.6 2.0 21 65-85 76-96 (100)
10 PF07713 DUF1604: Protein of u 38.6 8.4 0.00018 28.3 -0.5 11 75-85 23-33 (87)
11 cd01939 Ketohexokinase Ketohex 37.8 17 0.00036 28.1 1.0 12 75-86 253-264 (290)
12 cd01940 Fructoselysine_kinase_ 36.5 18 0.00039 27.3 1.0 12 75-86 227-238 (264)
13 KOG0491 Transcription factor B 36.0 20 0.00043 29.7 1.3 64 54-117 104-167 (194)
14 PF07019 Rab5ip: Rab5-interact 35.6 16 0.00036 24.5 0.6 20 69-88 5-24 (81)
15 PF08183 SpoV: Stage V sporula 35.2 21 0.00046 21.3 0.9 10 76-85 11-20 (26)
16 COG0524 RbsK Sugar kinases, ri 34.8 20 0.00043 27.9 1.1 24 65-88 244-271 (311)
17 cd01167 bac_FRK Fructokinases 34.3 25 0.00055 26.8 1.5 25 75-99 252-279 (295)
18 TIGR00917 2A060601 Niemann-Pic 33.9 14 0.0003 36.5 0.1 35 69-103 320-361 (1204)
19 TIGR01231 lacC tagatose-6-phos 30.1 52 0.0011 25.8 2.7 31 75-109 254-284 (309)
20 PTZ00247 adenosine kinase; Pro 29.8 27 0.00058 28.1 1.1 35 75-113 299-333 (345)
21 PRK09513 fruK 1-phosphofructok 29.7 27 0.00059 27.4 1.1 28 75-106 256-283 (312)
22 KOG3136 Uncharacterized conser 28.6 29 0.00062 28.7 1.0 28 54-81 120-147 (196)
23 PLN02548 adenosine kinase 28.2 30 0.00065 27.4 1.1 32 75-110 288-319 (332)
24 TIGR00918 2A060602 The Eukaryo 28.1 15 0.00034 36.5 -0.7 30 74-103 66-95 (1145)
25 PF03672 UPF0154: Uncharacteri 27.9 30 0.00065 24.0 0.9 12 74-85 5-16 (64)
26 cd01943 MAK32 MAK32 kinase. M 27.8 30 0.00066 28.1 1.1 12 75-86 269-280 (328)
27 cd01493 APPBP1_RUB Ubiquitin a 27.6 26 0.00055 30.9 0.6 24 59-82 357-395 (425)
28 cd01172 RfaE_like RfaE encodes 27.6 31 0.00068 26.4 1.1 30 75-108 259-288 (304)
29 PRK09954 putative kinase; Prov 27.1 32 0.00069 28.0 1.1 30 75-108 310-339 (362)
30 PF08452 DNAP_B_exo_N: DNA pol 26.9 28 0.0006 20.1 0.5 16 28-43 6-21 (22)
31 PF05230 MASE2: MASE2 domain; 26.6 36 0.00078 24.4 1.1 15 75-89 68-82 (91)
32 PTZ00292 ribokinase; Provision 26.6 34 0.00073 27.0 1.1 33 75-111 275-307 (326)
33 PLN02379 pfkB-type carbohydrat 26.1 34 0.00073 28.6 1.1 12 75-86 306-317 (367)
34 PLN02323 probable fructokinase 25.9 35 0.00076 27.0 1.0 31 75-105 269-302 (330)
35 PRK13508 tagatose-6-phosphate 25.6 36 0.00078 26.7 1.1 29 75-107 254-282 (309)
36 cd01168 adenosine_kinase Adeno 25.6 36 0.00078 26.6 1.1 21 75-99 274-294 (312)
37 cd01942 ribokinase_group_A Rib 25.5 37 0.00079 25.6 1.1 21 75-99 243-263 (279)
38 KOG2012 Ubiquitin activating e 25.5 33 0.00071 34.3 1.0 43 57-99 336-387 (1013)
39 PF15061 DUF4538: Domain of un 25.3 36 0.00079 23.3 0.9 39 74-114 8-54 (58)
40 PLN02813 pfkB-type carbohydrat 25.2 61 0.0013 27.9 2.5 32 75-110 355-387 (426)
41 cd01944 YegV_kinase_like YegV- 24.9 38 0.00082 26.0 1.1 12 75-86 255-266 (289)
42 PF14774 FAM177: FAM177 family 24.6 39 0.00084 25.6 1.0 15 75-89 82-96 (123)
43 PF09574 DUF2374: Protein of 24.1 34 0.00073 22.4 0.5 11 72-82 17-27 (42)
44 PRK09850 pseudouridine kinase; 23.9 40 0.00087 26.6 1.1 23 75-101 257-279 (313)
45 PRK11142 ribokinase; Provision 23.4 42 0.00091 25.9 1.1 35 75-113 254-288 (306)
46 PF11358 DUF3158: Protein of u 23.0 79 0.0017 25.3 2.5 38 25-73 63-102 (159)
47 cd01174 ribokinase Ribokinase 22.9 44 0.00095 25.4 1.1 30 75-108 251-280 (292)
48 PRK10294 6-phosphofructokinase 22.1 46 0.001 26.1 1.1 32 75-110 257-288 (309)
49 TIGR02808 short_TIGR02808 cons 22.1 39 0.00085 22.1 0.6 11 72-82 17-27 (42)
50 cd01945 ribokinase_group_B Rib 21.7 47 0.001 25.2 1.0 29 75-107 243-271 (284)
51 PRK09813 fructoselysine 6-kina 21.7 48 0.001 25.2 1.1 12 75-86 224-235 (260)
52 KOG2854 Possible pfkB family c 21.5 46 0.001 29.6 1.1 12 75-86 299-310 (343)
53 PRK15074 inosine/guanosine kin 21.4 47 0.001 29.2 1.1 13 75-87 359-371 (434)
54 TIGR02198 rfaE_dom_I rfaE bifu 21.3 49 0.0011 25.7 1.1 31 75-109 267-297 (315)
55 COG1786 Swiveling domain assoc 21.2 26 0.00057 27.4 -0.4 11 70-80 20-30 (131)
56 PLN02630 pfkB-type carbohydrat 21.0 49 0.0011 27.7 1.1 12 75-86 242-253 (335)
57 cd00287 ribokinase_pfkB_like r 20.9 49 0.0011 23.3 0.9 11 75-85 186-196 (196)
58 PF00294 PfkB: pfkB family car 20.9 52 0.0011 24.9 1.1 31 75-109 259-289 (301)
59 PF04226 Transgly_assoc: Trans 20.6 1.5E+02 0.0032 18.8 3.0 24 75-99 8-31 (48)
No 1
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=60.32 E-value=8.8 Score=29.74 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=29.1
Q ss_pred hhhhhhhhhhhcc-CCCC-chHHHHHHHhhhhccccccccc
Q 032957 75 AFVGGMFAGLLRL-DLND-DPLKDWVTRTVEAAGITEEEIK 113 (130)
Q Consensus 75 AFlGGffSGlLRL-nL~E-DPLKsWL~kq~~s~g~t~~~~~ 113 (130)
+|+|||++++++= ++.+ .+++.+|..-...+.+.....+
T Consensus 252 ~f~ag~~~~l~~g~~~~~~~~~~~a~~~a~~~Aa~~v~~~g 292 (304)
T PRK09434 252 AFVAGLLAGLSQAGLWTDEAELAEIIAQAQACGALATTAKG 292 (304)
T ss_pred HHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHHHHHcccC
Confidence 8999999999974 4443 4899999877777666555443
No 2
>PF15469 Sec5: Exocyst complex component Sec5
Probab=58.68 E-value=13 Score=27.76 Aligned_cols=37 Identities=22% Similarity=0.454 Sum_probs=27.7
Q ss_pred HHHHHHhCc--chhhhhhhhhhhccCCCCchHHHHHHHh
Q 032957 65 ILKEALKEP--VAFVGGMFAGLLRLDLNDDPLKDWVTRT 101 (130)
Q Consensus 65 I~KEl~qqP--VAFlGGffSGlLRLnL~EDPLKsWL~kq 101 (130)
++++|.+-| ....-=.+.=|+.|+..+||+=.||+.|
T Consensus 144 l~~~L~~~~~s~~~~~~~i~~Ll~L~~~~dPi~~~l~~q 182 (182)
T PF15469_consen 144 LWEKLLSPPSSQEEFLKLIRKLLELNVEEDPIWYWLESQ 182 (182)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHhCCCCCCHHHHHHHcC
Confidence 455555555 4555667888999999999999999754
No 3
>PF02486 Rep_trans: Replication initiation factor; InterPro: IPR003491 Plasmid replication is initiated by the replication initiation factor (REP). This family represents a probable topoisomerase that makes a sequence-specific single-stranded nick in the plasmid DNA at the origin of replication. Human proteins also belong to this family, including myelin transcription factor 2 and cerebrin-50 [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006270 DNA-dependent DNA replication initiation
Probab=58.29 E-value=20 Score=26.60 Aligned_cols=70 Identities=21% Similarity=0.282 Sum_probs=49.3
Q ss_pred eecCCCcceeecccccccCCccceeccCCCChH-----------------------HHHHHHhCcchhhhhhhhhhhccC
Q 032957 32 LKRSSSSSLRLRSNNYRNKNGVRACFSSPIDEP-----------------------ILKEALKEPVAFVGGMFAGLLRLD 88 (130)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~g~~a~f~~~~~tP-----------------------I~KEl~qqPVAFlGGffSGlLRLn 88 (130)
-....|..+|+|| | +|++.-||-+...+- ++=+.+..|-.+++|.+-+++.+.
T Consensus 49 ~~~~~g~T~Y~Gs---r-~S~~~~RiYdK~~E~~~~~~~~~~w~R~E~~lr~~~a~~~~~~l~~~~~~~~~~~~~~~~~~ 124 (182)
T PF02486_consen 49 NGNGKGETLYFGS---R-KSEKYLRIYDKKKEQENEGDEDSPWWRYELELRNEKAVIPVDELLDPGEYFAGIYPYLLNNY 124 (182)
T ss_pred cCCCcceEEEEec---C-CCceEEEEeccchhhccccccCCCeEEEEEEEecchHHHHHHHHHcccchHHHHHHHHHHHh
Confidence 3456788899998 3 366777777665555 566777789999999988887666
Q ss_pred C-------------------CCchHHHHHHHhhhhc
Q 032957 89 L-------------------NDDPLKDWVTRTVEAA 105 (130)
Q Consensus 89 L-------------------~EDPLKsWL~kq~~s~ 105 (130)
+ +-|-...||.+|...+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~e~~~~wl~~q~~~~ 160 (182)
T PF02486_consen 125 LRLGDVEKIRLSTKKKQKKLSLERSLRWLKRQVGPT 160 (182)
T ss_pred hhhcccccccccccceeccccHHHHHHHHHHHHHHH
Confidence 5 2223467888887643
No 4
>PRK14741 spoVM stage V sporulation protein M; Provisional
Probab=54.18 E-value=7.1 Score=23.24 Aligned_cols=12 Identities=33% Similarity=0.830 Sum_probs=9.9
Q ss_pred hhhhhhhhhhhc
Q 032957 75 AFVGGMFAGLLR 86 (130)
Q Consensus 75 AFlGGffSGlLR 86 (130)
-|+|||+-++|.
T Consensus 10 kflgg~vra~l~ 21 (26)
T PRK14741 10 KFLGGIVRAMLG 21 (26)
T ss_pred HHHHHHHHHHHH
Confidence 499999998873
No 5
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=47.72 E-value=13 Score=28.48 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=19.5
Q ss_pred hhhhhhhhhhhc-cCCCCchHHHHHHH
Q 032957 75 AFVGGMFAGLLR-LDLNDDPLKDWVTR 100 (130)
Q Consensus 75 AFlGGffSGlLR-LnL~EDPLKsWL~k 100 (130)
||+|||++++++ .++.+++++.=+.-
T Consensus 235 aF~Agfl~~l~~~~~~~~~~~~~a~~~ 261 (277)
T cd01946 235 TFAGGFIGYLASQKDTSEANMRRAIIY 261 (277)
T ss_pred HHHHHHHHHHHhCCCcchhhHHHHHHH
Confidence 899999999986 45556677665543
No 6
>PF03070 TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR004305 Proteins containing this domain are found in all the three major phyla of life: archaebacteria, eubacteria, and eukaryotes. In Bacillus subtilis, TENA is one of a number of proteins that enhance the expression of extracellular enzymes, such as alkaline protease, neutral protease and levansucrase []. The THI-4 protein, which is involved in thiamine biosynthesis, also contains this domain. The C-terminal part of these proteins consistently show significant sequence similarity to TENA proteins. This similarity was first noted with the Neurospora crassa THI-4 []. The exact molecular function of this domain is uncertain.; PDB: 2RD3_D 3RM5_B 1UDD_D 1Z72_B 3HML_A 3HLX_A 3HNH_A 3DDE_B 3OQL_A 2A6B_A ....
Probab=40.85 E-value=20 Score=26.45 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=27.1
Q ss_pred ChHHHHHHHhCcchhhhhhhhhhhccCCCCchHHHHHHHh
Q 032957 62 DEPILKEALKEPVAFVGGMFAGLLRLDLNDDPLKDWVTRT 101 (130)
Q Consensus 62 ~tPI~KEl~qqPVAFlGGffSGlLRLnL~EDPLKsWL~kq 101 (130)
..||+++.++|| |+-++..=.|+.+.++.||.+.
T Consensus 4 ~~~~w~~~~~HP------Fv~~l~~GtL~~~~f~~Yl~QD 37 (210)
T PF03070_consen 4 AEPIWEAILNHP------FVQELADGTLPKEAFRYYLIQD 37 (210)
T ss_dssp THHHHHHHHTSH------HHHHHHTTESEHHHHHHHHHHH
T ss_pred HHHHHHHHHCCH------HHHHHhCCCCCHHHHHHHHHhh
Confidence 479999999998 5555555578899999999764
No 7
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=40.21 E-value=28 Score=21.32 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=16.9
Q ss_pred HHHHHHHhCcchhhhhhhhhh
Q 032957 64 PILKEALKEPVAFVGGMFAGL 84 (130)
Q Consensus 64 PI~KEl~qqPVAFlGGffSGl 84 (130)
-+++++.++++|.+|.++=.+
T Consensus 7 ~~~~~f~~nk~a~~gl~il~~ 27 (56)
T PF12911_consen 7 DAWRRFRRNKLAVIGLIILLI 27 (56)
T ss_pred HHHHHHHhCchHHHHHHHHHH
Confidence 478999999999999865433
No 8
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=39.73 E-value=24 Score=26.72 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=21.0
Q ss_pred hhhhhhhhhhhccCCCCchHHHHHHHhhhhcc
Q 032957 75 AFVGGMFAGLLRLDLNDDPLKDWVTRTVEAAG 106 (130)
Q Consensus 75 AFlGGffSGlLRLnL~EDPLKsWL~kq~~s~g 106 (130)
||++||++|+++ ..|+++-|.--..++.
T Consensus 229 aF~ag~l~~l~~----g~~~~~al~~a~~~Aa 256 (265)
T cd01947 229 SFAAGFIYGLLK----GWSIEEALELGAQCGA 256 (265)
T ss_pred HHHHHHHHHHHc----CCCHHHHHHHHHHHHH
Confidence 899999999985 4678888865544443
No 9
>PF04930 FUN14: FUN14 family; InterPro: IPR007014 This is a family of short proteins found in eukaryotes and some archaea. Although the function of these proteins is not known they may contain transmembrane helices.
Probab=38.62 E-value=25 Score=24.64 Aligned_cols=21 Identities=38% Similarity=0.654 Sum_probs=16.3
Q ss_pred HHHHHHhCcchhhhhhhhhhh
Q 032957 65 ILKEALKEPVAFVGGMFAGLL 85 (130)
Q Consensus 65 I~KEl~qqPVAFlGGffSGlL 85 (130)
=+.+++++=+.|.+||++|++
T Consensus 76 ~~~~~l~~~~~~~~gF~~Gf~ 96 (100)
T PF04930_consen 76 KLMDFLKSNLPFSAGFLAGFL 96 (100)
T ss_pred HHHHHHHcCccHhHHHHHHHH
Confidence 356677788888888888875
No 10
>PF07713 DUF1604: Protein of unknown function (DUF1604); InterPro: IPR011666 This domain is found at the N terminus of several eukaryotic RNA processing proteins (e.g Q8N3B7 from SWISSPROT).
Probab=38.56 E-value=8.4 Score=28.26 Aligned_cols=11 Identities=55% Similarity=0.981 Sum_probs=10.2
Q ss_pred hhhhhhhhhhh
Q 032957 75 AFVGGMFAGLL 85 (130)
Q Consensus 75 AFlGGffSGlL 85 (130)
||.|||.||-+
T Consensus 23 AFtGGfSAGyf 33 (87)
T PF07713_consen 23 AFTGGFSAGYF 33 (87)
T ss_pred cccCCccccee
Confidence 89999999987
No 11
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=37.79 E-value=17 Score=28.09 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=11.3
Q ss_pred hhhhhhhhhhhc
Q 032957 75 AFVGGMFAGLLR 86 (130)
Q Consensus 75 AFlGGffSGlLR 86 (130)
||+|||++|+++
T Consensus 253 sf~agfl~~l~~ 264 (290)
T cd01939 253 TFNAAVIYALNK 264 (290)
T ss_pred HHHHHHHHHHHc
Confidence 999999999986
No 12
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=36.52 E-value=18 Score=27.29 Aligned_cols=12 Identities=33% Similarity=0.791 Sum_probs=11.1
Q ss_pred hhhhhhhhhhhc
Q 032957 75 AFVGGMFAGLLR 86 (130)
Q Consensus 75 AFlGGffSGlLR 86 (130)
||+|||++|+++
T Consensus 227 af~ag~i~~l~~ 238 (264)
T cd01940 227 SFIAGFLLSLLA 238 (264)
T ss_pred HHHHHHHHHHHh
Confidence 899999999975
No 13
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=36.05 E-value=20 Score=29.66 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=39.0
Q ss_pred ceeccCCCChHHHHHHHhCcchhhhhhhhhhhccCCCCchHHHHHHHhhhhcccccccccccCC
Q 032957 54 RACFSSPIDEPILKEALKEPVAFVGGMFAGLLRLDLNDDPLKDWVTRTVEAAGITEEEIKAEDS 117 (130)
Q Consensus 54 ~a~f~~~~~tPI~KEl~qqPVAFlGGffSGlLRLnL~EDPLKsWL~kq~~s~g~t~~~~~a~n~ 117 (130)
+..|.++-..=+=++|-.|=--=+--++-=---|+|++.=||+|.+.+.+...-.....++.|+
T Consensus 104 Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~~p~nS 167 (194)
T KOG0491|consen 104 RTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNNQPKNS 167 (194)
T ss_pred cccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 5678887766666666533211111111112347899999999999998877666555554443
No 14
>PF07019 Rab5ip: Rab5-interacting protein (Rab5ip)
Probab=35.57 E-value=16 Score=24.52 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=16.2
Q ss_pred HHhCcchhhhhhhhhhhccC
Q 032957 69 ALKEPVAFVGGMFAGLLRLD 88 (130)
Q Consensus 69 l~qqPVAFlGGffSGlLRLn 88 (130)
-+|+=.|.+.|.++|+|.|.
T Consensus 5 ~~r~~~a~~~Gi~aGILgLt 24 (81)
T PF07019_consen 5 WCRQIIALLAGIAAGILGLT 24 (81)
T ss_pred HHHHHHHHHHHHHhhhcccc
Confidence 35666799999999999874
No 15
>PF08183 SpoV: Stage V sporulation protein family; InterPro: IPR012609 This family consists of the stage V sporulation (SpoV) proteins of Bacillus subtilis which includes SpoVM. SpoVM is an small, 26 residue-long protein that is produced in the mother cell chamber of the sporangium during the process of sporulation in B. subtilis. SpoVM forms an amphipathic alpha-helix and is recruited to the polar septum shortly after the sporangium undergoes asymmetric division. The function of SpoVM depends on proper subcellular localisation [].
Probab=35.22 E-value=21 Score=21.26 Aligned_cols=10 Identities=50% Similarity=1.052 Sum_probs=8.8
Q ss_pred hhhhhhhhhh
Q 032957 76 FVGGMFAGLL 85 (130)
Q Consensus 76 FlGGffSGlL 85 (130)
|+|||+-++|
T Consensus 11 f~Gg~v~~~L 20 (26)
T PF08183_consen 11 FLGGVVRALL 20 (26)
T ss_pred HHhHHHHHHH
Confidence 8999998886
No 16
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=34.82 E-value=20 Score=27.87 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=18.5
Q ss_pred HHHHHHhCcc----hhhhhhhhhhhccC
Q 032957 65 ILKEALKEPV----AFVGGMFAGLLRLD 88 (130)
Q Consensus 65 I~KEl~qqPV----AFlGGffSGlLRLn 88 (130)
+.+.-+-.++ ||+|||++|+++-.
T Consensus 244 ~~~~~vvDttGAGDaF~agfl~~~~~g~ 271 (311)
T COG0524 244 AFKVKVVDTTGAGDAFAAGFLAGLLEGK 271 (311)
T ss_pred CCccccccCCCchHHHHHHHHHHHHcCC
Confidence 4444455666 79999999999887
No 17
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=34.30 E-value=25 Score=26.75 Aligned_cols=25 Identities=40% Similarity=0.656 Sum_probs=17.6
Q ss_pred hhhhhhhhhhhccC---CCCchHHHHHH
Q 032957 75 AFVGGMFAGLLRLD---LNDDPLKDWVT 99 (130)
Q Consensus 75 AFlGGffSGlLRLn---L~EDPLKsWL~ 99 (130)
+|+|||++|+++=. +.+++++.=+.
T Consensus 252 ~f~a~~~~~l~~g~~~~~~~~~~~~a~~ 279 (295)
T cd01167 252 AFVAGLLAQLLSRGLLALDEDELAEALR 279 (295)
T ss_pred HHHHHHHHHHHhCCcccccHHHHHHHHH
Confidence 89999999999854 44445554443
No 18
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=33.87 E-value=14 Score=36.52 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=27.8
Q ss_pred HHhCcc-------hhhhhhhhhhhccCCCCchHHHHHHHhhh
Q 032957 69 ALKEPV-------AFVGGMFAGLLRLDLNDDPLKDWVTRTVE 103 (130)
Q Consensus 69 l~qqPV-------AFlGGffSGlLRLnL~EDPLKsWL~kq~~ 103 (130)
..++|. .+++++..|++++.+..||++-|..+...
T Consensus 320 var~P~~vi~isllv~~~l~~Gl~~~~vetDpv~Lw~~~~s~ 361 (1204)
T TIGR00917 320 VARNPGLVLCLSVSVVLLLGVGLIFFEVETDPVKLWVAPGSR 361 (1204)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHhCcccCChhhhcCCCCcH
Confidence 557775 45677888999999999999999865544
No 19
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=30.11 E-value=52 Score=25.81 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=21.8
Q ss_pred hhhhhhhhhhhccCCCCchHHHHHHHhhhhccccc
Q 032957 75 AFVGGMFAGLLRLDLNDDPLKDWVTRTVEAAGITE 109 (130)
Q Consensus 75 AFlGGffSGlLRLnL~EDPLKsWL~kq~~s~g~t~ 109 (130)
||+|||++|+++ ..+++.-+..-...+.+..
T Consensus 254 aF~agfl~~l~~----g~~~~~a~~~a~a~aa~~~ 284 (309)
T TIGR01231 254 STVAGITSALLN----HESDHDLLKKANTLGMLNA 284 (309)
T ss_pred HHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHh
Confidence 899999999985 5577777765544444443
No 20
>PTZ00247 adenosine kinase; Provisional
Probab=29.83 E-value=27 Score=28.10 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=22.8
Q ss_pred hhhhhhhhhhhccCCCCchHHHHHHHhhhhccccccccc
Q 032957 75 AFVGGMFAGLLRLDLNDDPLKDWVTRTVEAAGITEEEIK 113 (130)
Q Consensus 75 AFlGGffSGlLRLnL~EDPLKsWL~kq~~s~g~t~~~~~ 113 (130)
||.|||++|+++ ..++++=+.--..++.++....+
T Consensus 299 aF~agfl~~l~~----g~~~~~al~~a~~aAa~~v~~~G 333 (345)
T PTZ00247 299 AFVGGFLAQYAN----GKDIDRCVEAGHYSAQVIIQHNG 333 (345)
T ss_pred HHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHhccC
Confidence 899999999984 55676666544444444444333
No 21
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=29.71 E-value=27 Score=27.40 Aligned_cols=28 Identities=21% Similarity=0.410 Sum_probs=17.9
Q ss_pred hhhhhhhhhhhccCCCCchHHHHHHHhhhhcc
Q 032957 75 AFVGGMFAGLLRLDLNDDPLKDWVTRTVEAAG 106 (130)
Q Consensus 75 AFlGGffSGlLRLnL~EDPLKsWL~kq~~s~g 106 (130)
+|+|||++|+++ ..|++.=++.-...+.
T Consensus 256 af~ag~i~~l~~----g~~~~~a~~~A~a~Aa 283 (312)
T PRK09513 256 SMVGGLIYGLLM----RESSEHTLRLATAVSA 283 (312)
T ss_pred HHHHHHHHHHHc----CCCHHHHHHHHHHHHH
Confidence 899999999985 3345554444333333
No 22
>KOG3136 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.62 E-value=29 Score=28.73 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=23.9
Q ss_pred ceeccCCCChHHHHHHHhCcchhhhhhh
Q 032957 54 RACFSSPIDEPILKEALKEPVAFVGGMF 81 (130)
Q Consensus 54 ~a~f~~~~~tPI~KEl~qqPVAFlGGff 81 (130)
.+|-.+|..+|+++.++|-||||-.=|.
T Consensus 120 VSCCL~P~kQ~LLErvl~a~va~~~~f~ 147 (196)
T KOG3136|consen 120 VSCCLNPSKQTLLERVLKAKVAKPATFG 147 (196)
T ss_pred HHHHcCCchhHHHHHHHhcccccchhhh
Confidence 5778899999999999999999865544
No 23
>PLN02548 adenosine kinase
Probab=28.25 E-value=30 Score=27.43 Aligned_cols=32 Identities=28% Similarity=0.479 Sum_probs=20.6
Q ss_pred hhhhhhhhhhhccCCCCchHHHHHHHhhhhcccccc
Q 032957 75 AFVGGMFAGLLRLDLNDDPLKDWVTRTVEAAGITEE 110 (130)
Q Consensus 75 AFlGGffSGlLRLnL~EDPLKsWL~kq~~s~g~t~~ 110 (130)
||+|||++|+++ .-+++.=|.--..++.+...
T Consensus 288 aF~ag~l~~l~~----g~~l~eal~~a~aaAa~~v~ 319 (332)
T PLN02548 288 AFVGGFLSQLVQ----GKDIEECVRAGNYAANVIIQ 319 (332)
T ss_pred HHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHh
Confidence 899999999974 44666655544444444333
No 24
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=28.13 E-value=15 Score=36.46 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=26.2
Q ss_pred chhhhhhhhhhhccCCCCchHHHHHHHhhh
Q 032957 74 VAFVGGMFAGLLRLDLNDDPLKDWVTRTVE 103 (130)
Q Consensus 74 VAFlGGffSGlLRLnL~EDPLKsWL~kq~~ 103 (130)
+.|+|++..|+.++.+..||+|=|+.....
T Consensus 66 ~~~~~~~~~Gl~~~~ietdp~~LWv~~~sr 95 (1145)
T TIGR00918 66 LLVFSAFAVGLRAANIETNVEQLWVEVGGR 95 (1145)
T ss_pred HHHHHHHHhhHhheEEEecHHHhccCCCCh
Confidence 478899999999999999999999975544
No 25
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=27.95 E-value=30 Score=23.97 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=9.1
Q ss_pred chhhhhhhhhhh
Q 032957 74 VAFVGGMFAGLL 85 (130)
Q Consensus 74 VAFlGGffSGlL 85 (130)
|||++|++.|.+
T Consensus 5 lali~G~~~Gff 16 (64)
T PF03672_consen 5 LALIVGAVIGFF 16 (64)
T ss_pred HHHHHHHHHHHH
Confidence 677888877776
No 26
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=27.82 E-value=30 Score=28.07 Aligned_cols=12 Identities=50% Similarity=0.888 Sum_probs=11.1
Q ss_pred hhhhhhhhhhhc
Q 032957 75 AFVGGMFAGLLR 86 (130)
Q Consensus 75 AFlGGffSGlLR 86 (130)
||+|||++|+++
T Consensus 269 aF~agfl~~l~~ 280 (328)
T cd01943 269 SFLGGFAAGLAL 280 (328)
T ss_pred HHHHHHHHHHHc
Confidence 799999999986
No 27
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=27.63 E-value=26 Score=30.92 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=17.4
Q ss_pred CCCChHHHHHHHh--------------Ccc-hhhhhhhh
Q 032957 59 SPIDEPILKEALK--------------EPV-AFVGGMFA 82 (130)
Q Consensus 59 ~~~~tPI~KEl~q--------------qPV-AFlGGffS 82 (130)
+.+++..++.|.| +|| |||||++|
T Consensus 357 ~~I~~~~i~~FCkna~~l~~i~~~~~~~~~~~~~gg~~a 395 (425)
T cd01493 357 DSISDKEIKLFCKNAAFLRVIRGRSLEHNISAFMGGIAA 395 (425)
T ss_pred CCCCHHHHHHHHhhHHhhhcccCCcccchHHHHHhHHHH
Confidence 3456666666655 678 99999998
No 28
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=27.63 E-value=31 Score=26.43 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=19.7
Q ss_pred hhhhhhhhhhhccCCCCchHHHHHHHhhhhcccc
Q 032957 75 AFVGGMFAGLLRLDLNDDPLKDWVTRTVEAAGIT 108 (130)
Q Consensus 75 AFlGGffSGlLRLnL~EDPLKsWL~kq~~s~g~t 108 (130)
||+|||++|+++ ..|++.=|.--...+...
T Consensus 259 af~ag~i~~l~~----g~~~~~al~~a~a~Aa~~ 288 (304)
T cd01172 259 TVIATLALALAA----GADLEEAAFLANAAAGVV 288 (304)
T ss_pred HHHHHHHHHHHc----CCCHHHHHHHHHHHhhee
Confidence 899999999974 445666555444444333
No 29
>PRK09954 putative kinase; Provisional
Probab=27.11 E-value=32 Score=27.95 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=18.9
Q ss_pred hhhhhhhhhhhccCCCCchHHHHHHHhhhhcccc
Q 032957 75 AFVGGMFAGLLRLDLNDDPLKDWVTRTVEAAGIT 108 (130)
Q Consensus 75 AFlGGffSGlLRLnL~EDPLKsWL~kq~~s~g~t 108 (130)
||+|||++|+++ ..+++.=+.--...+.++
T Consensus 310 aF~Ag~l~~l~~----g~~~~eal~~a~a~Aal~ 339 (362)
T PRK09954 310 GFMAGLVYSFLE----GYSFRDSARFAMACAAIS 339 (362)
T ss_pred HHHHHHHHHHHc----CCCHHHHHHHHHHHHHHH
Confidence 899999999984 445555444333333333
No 30
>PF08452 DNAP_B_exo_N: DNA polymerase family B exonuclease domain, N-terminal; InterPro: IPR013660 This domain is found in viral DNA polymerases to the N terminus of DNA polymerase family B exonuclease domains (IPR006133 from INTERPRO). ; GO: 0003887 DNA-directed DNA polymerase activity
Probab=26.92 E-value=28 Score=20.06 Aligned_cols=16 Identities=19% Similarity=0.192 Sum_probs=14.0
Q ss_pred ccceeecCCCcceeec
Q 032957 28 SSLLLKRSSSSSLRLR 43 (130)
Q Consensus 28 ~~~~~~~~~~~~~~~~ 43 (130)
+.|..+|.+.++|||.
T Consensus 6 iNWFE~~ge~r~lyLK 21 (22)
T PF08452_consen 6 INWFESRGEERFLYLK 21 (22)
T ss_pred eehhhhCCceeEEEEe
Confidence 5689999999999985
No 31
>PF05230 MASE2: MASE2 domain; InterPro: IPR007894 This domain of unknown function is often found adjacent to the GGDEF domain in bacteria (IPR000160 from INTERPRO).
Probab=26.64 E-value=36 Score=24.38 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=13.4
Q ss_pred hhhhhhhhhhhccCC
Q 032957 75 AFVGGMFAGLLRLDL 89 (130)
Q Consensus 75 AFlGGffSGlLRLnL 89 (130)
|++|||..|++.+|+
T Consensus 68 a~~~G~wia~m~fn~ 82 (91)
T PF05230_consen 68 AAFGGFWIALMGFNP 82 (91)
T ss_pred HHHHHHHHHHHcCCh
Confidence 799999999998874
No 32
>PTZ00292 ribokinase; Provisional
Probab=26.55 E-value=34 Score=26.99 Aligned_cols=33 Identities=30% Similarity=0.345 Sum_probs=22.9
Q ss_pred hhhhhhhhhhhccCCCCchHHHHHHHhhhhccccccc
Q 032957 75 AFVGGMFAGLLRLDLNDDPLKDWVTRTVEAAGITEEE 111 (130)
Q Consensus 75 AFlGGffSGlLRLnL~EDPLKsWL~kq~~s~g~t~~~ 111 (130)
||+|||++|+++ ..|++.=|..-...+.+....
T Consensus 275 aF~ag~l~~l~~----g~~~~~al~~a~a~Aa~~v~~ 307 (326)
T PTZ00292 275 CFVGSMAYFMSR----GKDLKESCKRANRIAAISVTR 307 (326)
T ss_pred HHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHcCC
Confidence 899999999996 456777666555555444443
No 33
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=26.10 E-value=34 Score=28.62 Aligned_cols=12 Identities=33% Similarity=0.844 Sum_probs=11.0
Q ss_pred hhhhhhhhhhhc
Q 032957 75 AFVGGMFAGLLR 86 (130)
Q Consensus 75 AFlGGffSGlLR 86 (130)
+|.|||+.|+++
T Consensus 306 aFaagfl~gl~~ 317 (367)
T PLN02379 306 LFASGFLYGLIK 317 (367)
T ss_pred HHHHHHHHHHHC
Confidence 899999999974
No 34
>PLN02323 probable fructokinase
Probab=25.86 E-value=35 Score=27.03 Aligned_cols=31 Identities=23% Similarity=0.435 Sum_probs=19.4
Q ss_pred hhhhhhhhhhhcc-C--CCCchHHHHHHHhhhhc
Q 032957 75 AFVGGMFAGLLRL-D--LNDDPLKDWVTRTVEAA 105 (130)
Q Consensus 75 AFlGGffSGlLRL-n--L~EDPLKsWL~kq~~s~ 105 (130)
+|+|||++|+++= + ..++|++.=+.--...+
T Consensus 269 af~Agfl~~l~~g~~~~~~~~~l~~al~~a~a~A 302 (330)
T PLN02323 269 AFVGGLLSQLAKDLSLLEDEERLREALRFANACG 302 (330)
T ss_pred HHHHHHHHHHHcCCccccchHHHHHHHHHHHHHH
Confidence 8999999999862 2 22456665554333333
No 35
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=25.60 E-value=36 Score=26.71 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=19.5
Q ss_pred hhhhhhhhhhhccCCCCchHHHHHHHhhhhccc
Q 032957 75 AFVGGMFAGLLRLDLNDDPLKDWVTRTVEAAGI 107 (130)
Q Consensus 75 AFlGGffSGlLRLnL~EDPLKsWL~kq~~s~g~ 107 (130)
||+|||++|+++ ..|+++=|.--...+.+
T Consensus 254 aF~Agfi~~l~~----g~~~~~al~~a~a~aa~ 282 (309)
T PRK13508 254 STVAGIASGLLH----QEDDADLLKKANVLGML 282 (309)
T ss_pred HHHHHHHHHHHc----CCCHHHHHHHHHHHHHH
Confidence 899999999975 45666655544443333
No 36
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=25.57 E-value=36 Score=26.57 Aligned_cols=21 Identities=38% Similarity=0.923 Sum_probs=14.9
Q ss_pred hhhhhhhhhhhccCCCCchHHHHHH
Q 032957 75 AFVGGMFAGLLRLDLNDDPLKDWVT 99 (130)
Q Consensus 75 AFlGGffSGlLRLnL~EDPLKsWL~ 99 (130)
||+|||++|+++ ..+++.=+.
T Consensus 274 af~ag~l~~l~~----g~~~~~a~~ 294 (312)
T cd01168 274 AFAGGFLYGLVQ----GEPLEECIR 294 (312)
T ss_pred HHHHHHHHHHHc----CCCHHHHHH
Confidence 899999999975 344544443
No 37
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=25.50 E-value=37 Score=25.65 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=15.3
Q ss_pred hhhhhhhhhhhccCCCCchHHHHHH
Q 032957 75 AFVGGMFAGLLRLDLNDDPLKDWVT 99 (130)
Q Consensus 75 AFlGGffSGlLRLnL~EDPLKsWL~ 99 (130)
+|+|||++++++ ..+++.=|.
T Consensus 243 af~a~~i~~l~~----g~~l~~al~ 263 (279)
T cd01942 243 AFRAGFLYGLLR----GYDLEESLR 263 (279)
T ss_pred HHHHHHHHHHHc----CCCHHHHHH
Confidence 899999999986 345554444
No 38
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=25.49 E-value=33 Score=34.30 Aligned_cols=43 Identities=33% Similarity=0.654 Sum_probs=32.5
Q ss_pred ccCCCChHHHHHHHhC------c-chhhhhhhh-hhhccCCCC-chHHHHHH
Q 032957 57 FSSPIDEPILKEALKE------P-VAFVGGMFA-GLLRLDLND-DPLKDWVT 99 (130)
Q Consensus 57 f~~~~~tPI~KEl~qq------P-VAFlGGffS-GlLRLnL~E-DPLKsWL~ 99 (130)
+-...++-|++++-.+ | +||+||+++ .+|+=.... -|||.||=
T Consensus 336 ~~~~vde~Lir~~s~~a~g~L~pm~A~~GG~vaQEvlKa~sgKF~PL~Q~lY 387 (1013)
T KOG2012|consen 336 LEEDVDEKLIRHFSFSARGDLNPMVAFFGGIVAQEVLKACSGKFTPLKQWLY 387 (1013)
T ss_pred ccccchHHHHHHHHHhhccCcchHHHHHhhhhHHHHHHhhccCccchhHhee
Confidence 4446677778777654 2 689999999 888876665 49999984
No 39
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=25.33 E-value=36 Score=23.31 Aligned_cols=39 Identities=28% Similarity=0.575 Sum_probs=25.6
Q ss_pred chhhhhhhhhh--------hccCCCCchHHHHHHHhhhhcccccccccc
Q 032957 74 VAFVGGMFAGL--------LRLDLNDDPLKDWVTRTVEAAGITEEEIKA 114 (130)
Q Consensus 74 VAFlGGffSGl--------LRLnL~EDPLKsWL~kq~~s~g~t~~~~~a 114 (130)
..|+||||+.+ +|==|+-|+-|. .+....+|+.-++..+
T Consensus 8 ~~~~ggfVg~iG~a~Ypi~~~Pmm~~eeYk~--~Q~~nR~gI~qedvQP 54 (58)
T PF15061_consen 8 ALFVGGFVGLIGAALYPIYFRPMMNPEEYKK--EQKINRAGIKQEDVQP 54 (58)
T ss_pred hhhHHHHHHHHHHHHhhhhcccccChHHHHH--HHHHHHhcccHhhcCC
Confidence 57899998764 566677788883 4444556666665443
No 40
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=25.17 E-value=61 Score=27.95 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=23.0
Q ss_pred hhhhhhhhhhhccCCCCc-hHHHHHHHhhhhcccccc
Q 032957 75 AFVGGMFAGLLRLDLNDD-PLKDWVTRTVEAAGITEE 110 (130)
Q Consensus 75 AFlGGffSGlLRLnL~ED-PLKsWL~kq~~s~g~t~~ 110 (130)
||.|||++|+++ .. +++.-+.--...+.+...
T Consensus 355 AF~Agfl~~l~~----G~~~l~~al~~A~a~Aa~~v~ 387 (426)
T PLN02813 355 AYAAGILYGLLR----GVSDLRGMGELAARVAATVVG 387 (426)
T ss_pred HHHHHHHHHHHc----CCCCHHHHHHHHHHHHHHHHc
Confidence 999999999986 34 788777655555544443
No 41
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=24.90 E-value=38 Score=25.96 Aligned_cols=12 Identities=50% Similarity=0.960 Sum_probs=10.8
Q ss_pred hhhhhhhhhhhc
Q 032957 75 AFVGGMFAGLLR 86 (130)
Q Consensus 75 AFlGGffSGlLR 86 (130)
||+|||++|+++
T Consensus 255 af~ag~l~~~~~ 266 (289)
T cd01944 255 THAGGMLAGLAK 266 (289)
T ss_pred HHHHHHHHHHHc
Confidence 899999999875
No 42
>PF14774 FAM177: FAM177 family
Probab=24.61 E-value=39 Score=25.65 Aligned_cols=15 Identities=13% Similarity=0.434 Sum_probs=13.1
Q ss_pred hhhhhhhhhhhccCC
Q 032957 75 AFVGGMFAGLLRLDL 89 (130)
Q Consensus 75 AFlGGffSGlLRLnL 89 (130)
=|+||.||++|.|+=
T Consensus 82 d~~Ge~lA~~fGit~ 96 (123)
T PF14774_consen 82 DYLGEKLASFFGITS 96 (123)
T ss_pred hhhhhHHHHHhCCCc
Confidence 499999999999873
No 43
>PF09574 DUF2374: Protein of unknown function (Duf2374); InterPro: IPR014175 This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC 7966.
Probab=24.09 E-value=34 Score=22.37 Aligned_cols=11 Identities=36% Similarity=0.598 Sum_probs=9.1
Q ss_pred Ccchhhhhhhh
Q 032957 72 EPVAFVGGMFA 82 (130)
Q Consensus 72 qPVAFlGGffS 82 (130)
-|+-|++||++
T Consensus 17 mPvI~L~GF~~ 27 (42)
T PF09574_consen 17 MPVIILSGFAA 27 (42)
T ss_pred chHHHHhhHHH
Confidence 48999999975
No 44
>PRK09850 pseudouridine kinase; Provisional
Probab=23.89 E-value=40 Score=26.56 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=16.0
Q ss_pred hhhhhhhhhhhccCCCCchHHHHHHHh
Q 032957 75 AFVGGMFAGLLRLDLNDDPLKDWVTRT 101 (130)
Q Consensus 75 AFlGGffSGlLRLnL~EDPLKsWL~kq 101 (130)
||+|||++++++ ..+++.=+..-
T Consensus 257 aF~agfi~~l~~----g~~~~eal~~a 279 (313)
T PRK09850 257 AMMAGLASCWVD----GMPFAESVRFA 279 (313)
T ss_pred HHHHHHHHHHHc----CCCHHHHHHHH
Confidence 899999999974 34555545433
No 45
>PRK11142 ribokinase; Provisional
Probab=23.44 E-value=42 Score=25.86 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=24.8
Q ss_pred hhhhhhhhhhhccCCCCchHHHHHHHhhhhccccccccc
Q 032957 75 AFVGGMFAGLLRLDLNDDPLKDWVTRTVEAAGITEEEIK 113 (130)
Q Consensus 75 AFlGGffSGlLRLnL~EDPLKsWL~kq~~s~g~t~~~~~ 113 (130)
||+|||++|+++ .-+++.-+..-...+.+.....+
T Consensus 254 aF~Agfi~~l~~----g~~~~~al~~a~~~Aa~~~~~~G 288 (306)
T PRK11142 254 TFNGALVTALLE----GKPLPEAIRFAHAAAAIAVTRKG 288 (306)
T ss_pred HHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHcCCCc
Confidence 899999999976 45678888766665555444333
No 46
>PF11358 DUF3158: Protein of unknown function (DUF3158); InterPro: IPR021502 Some members in this family of proteins are annotated as integrase regulator R however this cannot be confirmed. This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=22.98 E-value=79 Score=25.27 Aligned_cols=38 Identities=29% Similarity=0.494 Sum_probs=24.7
Q ss_pred CCCccceeecCC--CcceeecccccccCCccceeccCCCChHHHHHHHhCc
Q 032957 25 PPPSSLLLKRSS--SSSLRLRSNNYRNKNGVRACFSSPIDEPILKEALKEP 73 (130)
Q Consensus 25 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~a~f~~~~~tPI~KEl~qqP 73 (130)
..|+.+..+.++ +.|||-|+ .-|++.|| ++|++++.+|
T Consensus 63 lLpi~L~~q~tssG~tFLRWR~-~d~~rmG~----------~~W~~li~~~ 102 (159)
T PF11358_consen 63 LLPIRLIQQHTSSGTTFLRWRN-MDRSRMGV----------AVWQELIADP 102 (159)
T ss_pred ccCeehhcccCCCcceeeeccC-CCCccccH----------HHHHHHHcCC
Confidence 445666665443 45777776 55565665 6788888887
No 47
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=22.87 E-value=44 Score=25.40 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=20.9
Q ss_pred hhhhhhhhhhhccCCCCchHHHHHHHhhhhcccc
Q 032957 75 AFVGGMFAGLLRLDLNDDPLKDWVTRTVEAAGIT 108 (130)
Q Consensus 75 AFlGGffSGlLRLnL~EDPLKsWL~kq~~s~g~t 108 (130)
+|++||++|+++ ..+++.-|+.-...+...
T Consensus 251 ~F~ag~l~~l~~----g~~~~~al~~a~~~Aa~~ 280 (292)
T cd01174 251 TFIGALAAALAR----GLSLEEAIRFANAAAALS 280 (292)
T ss_pred HHHHHHHHHHHc----CCCHHHHHHHHHHHHHHH
Confidence 899999999985 456777776554444433
No 48
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=22.07 E-value=46 Score=26.10 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=22.4
Q ss_pred hhhhhhhhhhhccCCCCchHHHHHHHhhhhcccccc
Q 032957 75 AFVGGMFAGLLRLDLNDDPLKDWVTRTVEAAGITEE 110 (130)
Q Consensus 75 AFlGGffSGlLRLnL~EDPLKsWL~kq~~s~g~t~~ 110 (130)
||+|||++|+++ .-+++..|..-...+.+...
T Consensus 257 af~ag~l~~l~~----g~~~~~al~~a~a~aa~~v~ 288 (309)
T PRK10294 257 SMVGAMTLKLAE----NASLEEMVRFGVAAGSAATL 288 (309)
T ss_pred HHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHhc
Confidence 899999999976 34677788765555544444
No 49
>TIGR02808 short_TIGR02808 conserved hypothetical protein TIGR02808. This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC7966.
Probab=22.06 E-value=39 Score=22.06 Aligned_cols=11 Identities=27% Similarity=0.570 Sum_probs=9.1
Q ss_pred Ccchhhhhhhh
Q 032957 72 EPVAFVGGMFA 82 (130)
Q Consensus 72 qPVAFlGGffS 82 (130)
-|+-|+|||++
T Consensus 17 mPvIil~GF~~ 27 (42)
T TIGR02808 17 MPFIILSGFVA 27 (42)
T ss_pred cchHHhhhhHH
Confidence 48999999974
No 50
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=21.75 E-value=47 Score=25.19 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=17.9
Q ss_pred hhhhhhhhhhhccCCCCchHHHHHHHhhhhccc
Q 032957 75 AFVGGMFAGLLRLDLNDDPLKDWVTRTVEAAGI 107 (130)
Q Consensus 75 AFlGGffSGlLRLnL~EDPLKsWL~kq~~s~g~ 107 (130)
||++||++|+++= .+++.=|..-...+.+
T Consensus 243 af~ag~l~~l~~g----~~~~~al~~a~~~Aa~ 271 (284)
T cd01945 243 VFHGAFAHALAEG----MPLREALRFASAAAAL 271 (284)
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHHH
Confidence 8999999999863 3444444443333333
No 51
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=21.70 E-value=48 Score=25.25 Aligned_cols=12 Identities=33% Similarity=0.880 Sum_probs=11.0
Q ss_pred hhhhhhhhhhhc
Q 032957 75 AFVGGMFAGLLR 86 (130)
Q Consensus 75 AFlGGffSGlLR 86 (130)
||+|||++|+++
T Consensus 224 aF~ag~i~~~~~ 235 (260)
T PRK09813 224 SFIAGFLCGWLA 235 (260)
T ss_pred HHHHHHHHHHHc
Confidence 899999999975
No 52
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=21.50 E-value=46 Score=29.57 Aligned_cols=12 Identities=50% Similarity=1.027 Sum_probs=10.8
Q ss_pred hhhhhhhhhhhc
Q 032957 75 AFVGGMFAGLLR 86 (130)
Q Consensus 75 AFlGGffSGlLR 86 (130)
||.|||++++..
T Consensus 299 aFvgGFl~~l~q 310 (343)
T KOG2854|consen 299 AFVGGFLSQLVQ 310 (343)
T ss_pred HHHHHHHHHHHc
Confidence 899999999875
No 53
>PRK15074 inosine/guanosine kinase; Provisional
Probab=21.38 E-value=47 Score=29.23 Aligned_cols=13 Identities=0% Similarity=0.077 Sum_probs=11.7
Q ss_pred hhhhhhhhhhhcc
Q 032957 75 AFVGGMFAGLLRL 87 (130)
Q Consensus 75 AFlGGffSGlLRL 87 (130)
+|+|||+.|+++=
T Consensus 359 ~f~~gfl~~l~~g 371 (434)
T PRK15074 359 GALSALLHDITAN 371 (434)
T ss_pred HHHHHHHHHHHCC
Confidence 8999999999864
No 54
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=21.32 E-value=49 Score=25.70 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=19.7
Q ss_pred hhhhhhhhhhhccCCCCchHHHHHHHhhhhccccc
Q 032957 75 AFVGGMFAGLLRLDLNDDPLKDWVTRTVEAAGITE 109 (130)
Q Consensus 75 AFlGGffSGlLRLnL~EDPLKsWL~kq~~s~g~t~ 109 (130)
+|+|||++|+++ ..|++.=|..-...+.+..
T Consensus 267 af~ag~~~~l~~----g~~~~~al~~A~~~aa~~~ 297 (315)
T TIGR02198 267 TVIATLALALAA----GASLEEACRLANAAAGVVV 297 (315)
T ss_pred HHHHHHHHHHHc----CCCHHHHHHHHHHHhhhhh
Confidence 899999999984 3455555554444444333
No 55
>COG1786 Swiveling domain associated with predicted aconitase [Energy production and conversion]
Probab=21.23 E-value=26 Score=27.41 Aligned_cols=11 Identities=45% Similarity=1.081 Sum_probs=9.6
Q ss_pred HhCcchhhhhh
Q 032957 70 LKEPVAFVGGM 80 (130)
Q Consensus 70 ~qqPVAFlGGf 80 (130)
..+|++|+||+
T Consensus 20 s~~plSFlGgV 30 (131)
T COG1786 20 STEPLSFLGGV 30 (131)
T ss_pred eCCcceeeccc
Confidence 47899999997
No 56
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=21.03 E-value=49 Score=27.68 Aligned_cols=12 Identities=50% Similarity=1.140 Sum_probs=10.7
Q ss_pred hhhhhhhhhhhc
Q 032957 75 AFVGGMFAGLLR 86 (130)
Q Consensus 75 AFlGGffSGlLR 86 (130)
||+|||++|+++
T Consensus 242 aF~agfi~~l~~ 253 (335)
T PLN02630 242 SFLGGFVAGLVQ 253 (335)
T ss_pred HHHHHHHHHHHc
Confidence 499999999985
No 57
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=20.92 E-value=49 Score=23.34 Aligned_cols=11 Identities=45% Similarity=0.742 Sum_probs=9.3
Q ss_pred hhhhhhhhhhh
Q 032957 75 AFVGGMFAGLL 85 (130)
Q Consensus 75 AFlGGffSGlL 85 (130)
+|.|||++|++
T Consensus 186 ~f~ag~~~~l~ 196 (196)
T cd00287 186 AFLAALAAGLA 196 (196)
T ss_pred HHHHHHHHHhC
Confidence 79999999874
No 58
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=20.91 E-value=52 Score=24.88 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=20.5
Q ss_pred hhhhhhhhhhhccCCCCchHHHHHHHhhhhccccc
Q 032957 75 AFVGGMFAGLLRLDLNDDPLKDWVTRTVEAAGITE 109 (130)
Q Consensus 75 AFlGGffSGlLRLnL~EDPLKsWL~kq~~s~g~t~ 109 (130)
+|+|||+.|+++ ..+++.=+.--...+..+.
T Consensus 259 ~f~A~~i~~l~~----~~~~~~a~~~a~~~aa~~v 289 (301)
T PF00294_consen 259 AFAAGFIYGLLS----GMSLEEALKFANAAAALKV 289 (301)
T ss_dssp HHHHHHHHHHHT----THHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHc----CCCHHHHHHHHHHHHHHHh
Confidence 899999999998 5566655544444443333
No 59
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=20.62 E-value=1.5e+02 Score=18.77 Aligned_cols=24 Identities=33% Similarity=0.619 Sum_probs=15.7
Q ss_pred hhhhhhhhhhhccCCCCchHHHHHH
Q 032957 75 AFVGGMFAGLLRLDLNDDPLKDWVT 99 (130)
Q Consensus 75 AFlGGffSGlLRLnL~EDPLKsWL~ 99 (130)
||+||++.++|.. ..+-=+-+|+-
T Consensus 8 a~vGg~l~~~lg~-~~~~~~~~~i~ 31 (48)
T PF04226_consen 8 AFVGGWLFGLLGI-NGGGSWGSFIV 31 (48)
T ss_pred HHHHHHHHHHhcc-cCCchHHHHHH
Confidence 7899999998877 22223444543
Done!