BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032960
(130 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LZH8|OP164_ARATH Outer envelope pore protein 16-4, chloroplastic OS=Arabidopsis
thaliana GN=OEP164 PE=2 SV=1
Length = 136
Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/129 (68%), Positives = 112/129 (86%)
Query: 1 MEEELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYG 60
MEEEL+ AVPCSSL V+++LR+ TAG ++GLCAGP+ ARK GLSG+++ASFVAKSIG++G
Sbjct: 1 MEEELLSAVPCSSLTVESVLRVATAGGLYGLCAGPRDARKIGLSGVSQASFVAKSIGRFG 60
Query: 61 FQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAF 120
FQCGLV+GVF+ T CG+QRYR +NDWVNAL+ GAV GAA+A TR WTQV+G+AG+VSAF
Sbjct: 61 FQCGLVSGVFTMTHCGLQRYRGKNDWVNALVGGAVAGAAVAISTRNWTQVVGMAGLVSAF 120
Query: 121 SAAADYSRT 129
S A+ +RT
Sbjct: 121 SVLANCTRT 129
>sp|Q9ZV24|OP161_ARATH Outer envelope pore protein 16-1, chloroplastic OS=Arabidopsis
thaliana GN=OEP161 PE=1 SV=1
Length = 148
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 51/108 (47%)
Query: 10 PCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGV 69
P +L VDA L+IG G L A +G + K + K G G GV
Sbjct: 24 PFLNLTVDAFLKIGAVGVTKSLAEDTYKAIDKGSLSKSTLEHALKKLCKEGVYWGAAGGV 83
Query: 70 FSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIV 117
+ T GI+R R DW NA++AGA TGA ++A ++ I + I+
Sbjct: 84 YIGTEYGIERIRGSRDWKNAMLAGAATGAVLSAVGKKGKDTIVIDAIL 131
>sp|Q5BIN4|TIM22_BOVIN Mitochondrial import inner membrane translocase subunit Tim22
OS=Bos taurus GN=TIMM22 PE=2 SV=1
Length = 194
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 52 VAKSIGK----YGFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRW 107
V K +G+ Y +V +FS T C ++ YR ++DW N++I+G +TG AI
Sbjct: 114 VLKDMGQRGMSYAKNFAIVGAMFSCTECLVESYRGKSDWKNSVISGCITGGAIGFRAGLK 173
Query: 108 TQVIGVAGIVSAFSAAADY 126
VIG G +AFSAA DY
Sbjct: 174 AGVIGCGGF-AAFSAAIDY 191
>sp|Q41050|OEP16_PEA Outer envelope pore protein 16, chloroplastic OS=Pisum sativum
GN=OEP16 PE=1 SV=1
Length = 146
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 46/104 (44%)
Query: 10 PCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGV 69
P +L VD L+IG A + ++G K + K G G +AGV
Sbjct: 24 PFLNLTVDGFLKIGAVAATRSVAEDTFHIIRKGSISSNDFEKSLKKMCKEGAYWGAIAGV 83
Query: 70 FSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGV 113
+ G++R R DW NA+ GAVTGA ++A + I V
Sbjct: 84 YVGMEYGVERIRGTRDWKNAMFGGAVTGALVSAASNNKKDKIAV 127
>sp|Q9JKW1|TIM22_RAT Mitochondrial import inner membrane translocase subunit Tim22
OS=Rattus norvegicus GN=Timm22 PE=2 SV=2
Length = 192
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 52 VAKSIGK----YGFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRW 107
V K +G+ Y +V +FS T C ++ YR ++DW N++I+G +TG AI
Sbjct: 112 VLKDMGQRGMSYAKNFAIVGAMFSCTECLVESYRGKSDWKNSVISGCITGGAIGFRAGVK 171
Query: 108 TQVIGVAGIVSAFSAAADY 126
IG G +AFSAA DY
Sbjct: 172 AGAIGCGGF-AAFSAAIDY 189
>sp|Q9CQ85|TIM22_MOUSE Mitochondrial import inner membrane translocase subunit Tim22
OS=Mus musculus GN=Timm22 PE=2 SV=1
Length = 194
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 49 ASFVAKSIGK----YGFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGT 104
A V K +G+ Y +V +FS T C ++ YR ++DW N++I+G +TG AI
Sbjct: 111 AKEVLKDMGQRGMSYAKNFAIVGAMFSCTECLVESYRGKSDWKNSVISGCITGGAIGFRA 170
Query: 105 RRWTQVIGVAGIVSAFSAAADY 126
IG G +AFSAA DY
Sbjct: 171 GVKAGAIGCGGF-AAFSAAIDY 191
>sp|Q9Y584|TIM22_HUMAN Mitochondrial import inner membrane translocase subunit Tim22
OS=Homo sapiens GN=TIMM22 PE=1 SV=2
Length = 194
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 52 VAKSIGK----YGFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRW 107
V K +G+ Y +V +FS T C I+ YR +DW N++I+G +TG AI
Sbjct: 114 VLKDMGQRGMSYAKNFAIVGAMFSCTECLIESYRGTSDWKNSVISGCITGGAIGFRAGLK 173
Query: 108 TQVIGVAGIVSAFSAAADY 126
IG G +AFSAA DY
Sbjct: 174 AGAIGCGGF-AAFSAAIDY 191
>sp|Q5U4U5|TIM22_XENLA Mitochondrial import inner membrane translocase subunit Tim22
OS=Xenopus laevis GN=timm22 PE=2 SV=1
Length = 184
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 65 LVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAAA 124
+V +FS T C ++ YR ++DW N++++G +TG AI V+G G +AFSA
Sbjct: 121 IVGAMFSCTECLVESYRGKSDWKNSVMSGCITGGAIGFRAGLKAGVLGCGGF-AAFSAVI 179
Query: 125 DY 126
DY
Sbjct: 180 DY 181
>sp|Q5M7K0|TIM22_XENTR Mitochondrial import inner membrane translocase subunit Tim22
OS=Xenopus tropicalis GN=timm22 PE=2 SV=1
Length = 186
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 49 ASFVAKSIGKYGF----QCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGT 104
A V K +G+ G +V +FS T C ++ YR ++DW N++I+G +TG AI
Sbjct: 103 AKEVLKDMGQRGMSYAKNFAIVGAMFSCTECLVESYRGKSDWKNSVISGCITGGAIGFRA 162
Query: 105 RRWTQVIGVAGIVSAFSAAADY 126
+G G +AFSA DY
Sbjct: 163 GLKAGALGCGGF-AAFSAVIDY 183
>sp|Q6BZY4|TIM22_YARLI Mitochondrial import inner membrane translocase subunit TIM22
OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=TIM22 PE=3 SV=2
Length = 185
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 64 GLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAA 123
G + GVFS T C I+ R +ND N + AG +TG +A ++G AG +AFSAA
Sbjct: 108 GFIGGVFSGTECCIESLRAKNDIWNGVAAGCLTGGGLAVKAGPQAALVGCAGF-AAFSAA 166
Query: 124 AD-YSRTN 130
D Y R++
Sbjct: 167 IDVYMRSD 174
>sp|Q0WMZ5|OP162_ARATH Outer envelope pore protein 16-2, chloroplastic OS=Arabidopsis
thaliana GN=OEP162 PE=1 SV=1
Length = 178
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 52 VAKSIGKYGFQCGLVAGVFSSTRCGIQRYRK-QNDWVNALIAGAVTGAAIAAGTRRWT-- 108
+ K+ GK Q GL AG++S G+ R +DW N+ +AGA+TGAA+A T T
Sbjct: 95 LVKNTGKESLQWGLAAGLYSGITYGMTEVRGGAHDWRNSAVAGALTGAAMAMTTSERTSH 154
Query: 109 -QVIGVAGIVSAFSAAAD 125
QV+ A +A S AA+
Sbjct: 155 EQVVQSALTGAAISTAAN 172
>sp|Q9C1E8|TIM22_NEUCR Mitochondrial import inner membrane translocase subunit tim-22
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=tim-22 PE=3 SV=2
Length = 194
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 40 KRGLSGITRASF-VAKSIGKYGFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGA 98
K G + + S+ AK+ K V +FS CGI+ R +ND N + AG +TGA
Sbjct: 106 KHGFKDMGQRSYSTAKNFAK-------VGALFSGIECGIEGLRAKNDLGNGVAAGCLTGA 158
Query: 99 AIAAGTRRWTQVIGVAGIVSAFSAAAD 125
+A +G AG +AFSAA D
Sbjct: 159 ILAKNGGPQAAAVGCAGF-AAFSAAID 184
>sp|Q6FT37|TIM22_CANGA Mitochondrial import inner membrane translocase subunit TIM22
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=TIM22 PE=3 SV=1
Length = 193
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 64 GLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAA 123
G + +++ C ++ R +ND N + AG +TG +A + ++G AG +AFSAA
Sbjct: 116 GYIGMIYAGVECAVESLRAKNDIYNGITAGCITGGGLAYKSGPQAALVGCAGF-AAFSAA 174
Query: 124 AD 125
D
Sbjct: 175 ID 176
>sp|Q75E80|TIM22_ASHGO Mitochondrial import inner membrane translocase subunit TIM22
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=TIM22 PE=3 SV=1
Length = 201
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 64 GLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAA 123
G + ++S C I+ R +ND N + AG +TG +A + +IG AG +AFS A
Sbjct: 124 GYIGMIYSGVECTIESLRAKNDLYNGVAAGCLTGGGLAYKSGPSAALIGCAGF-AAFSTA 182
Query: 124 AD-YSRTN 130
D Y R+
Sbjct: 183 IDLYMRSE 190
>sp|P0CR88|TIM22_CRYNJ Mitochondrial import inner membrane translocase subunit TIM22
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=TIM22 PE=3 SV=1
Length = 187
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 37 LARKRGLSGITRAS--FVAKSIGKYGFQCG----LVAGVFSSTRCGIQRYRKQNDWVNAL 90
L+R TRA FV K +G+ + G V V+S C I+ YR +ND N +
Sbjct: 83 LSRASNKLTTTRAQTMFVFKEMGRNMWSSGRGFAKVGMVYSGVECCIEGYRAKNDIYNGV 142
Query: 91 IAGAVTGAAIA--AGTRRWTQVIGVAGIVSAFSAAADY 126
AG +TGA +A AG T ++G +AFS A D+
Sbjct: 143 SAGFLTGAILARNAGP---TAMLGGGVAFAAFSGAIDW 177
>sp|P0CR89|TIM22_CRYNB Mitochondrial import inner membrane translocase subunit TIM22
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=TIM22 PE=3 SV=1
Length = 187
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 37 LARKRGLSGITRAS--FVAKSIGKYGFQCG----LVAGVFSSTRCGIQRYRKQNDWVNAL 90
L+R TRA FV K +G+ + G V V+S C I+ YR +ND N +
Sbjct: 83 LSRASNKLTTTRAQTMFVFKEMGRNMWSSGRGFAKVGMVYSGVECCIEGYRAKNDIYNGV 142
Query: 91 IAGAVTGAAIA--AGTRRWTQVIGVAGIVSAFSAAADY 126
AG +TGA +A AG T ++G +AFS A D+
Sbjct: 143 SAGFLTGAILARNAGP---TAMLGGGVAFAAFSGAIDW 177
>sp|Q6CRJ6|TIM22_KLULA Mitochondrial import inner membrane translocase subunit TIM22
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TIM22
PE=3 SV=1
Length = 196
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 64 GLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAA 123
G + ++S C ++ R +ND N + AG +TG +A + ++G AG +AFS A
Sbjct: 119 GYIGMIYSGVECVVESLRAKNDIYNGVAAGCLTGGGLAYKSGPQAALVGCAGF-AAFSTA 177
Query: 124 ADYSRTN 130
D N
Sbjct: 178 IDLYMRN 184
>sp|O48528|OP163_ARATH Outer envelope pore protein 16-3, chloroplastic/mitochondrial
OS=Arabidopsis thaliana GN=OEP163 PE=1 SV=1
Length = 159
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 25 AGAIWGLCAG-----PQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGVFSSTRCGIQR 79
AG I+G P++ R L G+ R K +G +G + GV+ +Q
Sbjct: 29 AGTIYGTILATWKDVPRVERNVALPGLIR---TLKMMGTHGLTFAAIGGVYIGVEQLVQN 85
Query: 80 YRKQNDWVNALIAGAVTGAAI 100
+R + D+ N I G V GA++
Sbjct: 86 FRSKRDFYNGAIGGFVAGASV 106
>sp|Q6BT35|TIM22_DEBHA Mitochondrial import inner membrane translocase subunit TIM22
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=TIM22 PE=3 SV=1
Length = 182
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 64 GLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAA 123
G + V+S C I+ R ++D N + AG +TG +A ++G AG +AFS A
Sbjct: 105 GYIGMVYSGVECAIESLRAKHDIYNGVSAGCITGGGLAIRAGPQAALVGCAGF-AAFSTA 163
Query: 124 AD-YSRTN 130
D Y R++
Sbjct: 164 IDLYLRSD 171
>sp|A2RVP7|TI221_ARATH Mitochondrial import inner membrane translocase subunit TIM22-1
OS=Arabidopsis thaliana GN=TIM22-1 PE=2 SV=1
Length = 173
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 51 FVAKSIGKYGFQC----GLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRR 106
F AK +G+ + ++ VFS+ C +++ R ++D VN IAG VTG +++A
Sbjct: 89 FTAKQMGQRSWNSCKTFAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTGGSMSARGGP 148
Query: 107 WTQVIGVAGIVS 118
IG AG +
Sbjct: 149 KAACIGCAGFAT 160
>sp|Q2HJE9|TI17B_BOVIN Mitochondrial import inner membrane translocase subunit Tim17-B
OS=Bos taurus GN=TIMM17B PE=2 SV=1
Length = 172
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 68 GVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAA 102
G+FS+ CG+ R R + D N++ +GA+TGA +AA
Sbjct: 71 GLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAA 105
>sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane translocase subunit Tim17-B
OS=Homo sapiens GN=TIMM17B PE=1 SV=1
Length = 172
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 68 GVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAA 102
G+FS+ CG+ R R + D N++ +GA+TGA +AA
Sbjct: 71 GLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAA 105
>sp|P87146|TIM22_SCHPO Mitochondrial import inner membrane translocase subunit tim22
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tim22 PE=3 SV=1
Length = 175
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 64 GLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGI 116
GL+ ++S + C I+ +R + D NA+ AG TG A+A + V+G AG
Sbjct: 108 GLLGLIYSGSECCIEAFRAKTDIYNAIAAGVFTGGALAVRSGPKAIVLGGAGF 160
>sp|A1XJK0|TI224_ARATH Mitochondrial import inner membrane translocase subunit TIM22-4
OS=Arabidopsis thaliana GN=TIM22-4 PE=2 SV=3
Length = 142
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 51 FVAKSIGKYGFQC----GLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRR 106
F AK +G+ + ++ VFS+ C +++ R ++D VN IAG VTG +++A
Sbjct: 58 FTAKQMGQRSWNSCKTFAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTGGSMSARGGP 117
Query: 107 WTQVIGVAGI 116
IG AG
Sbjct: 118 KAACIGCAGF 127
>sp|P87130|TIM17_SCHPO Mitochondrial import inner membrane translocase subunit tim17
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tim17 PE=3 SV=1
Length = 164
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 22/126 (17%)
Query: 10 PCSSLAVD---AILRIGT-AGAIWGLCAG---PQLARKRGLSGI----TRASFVAKSIGK 58
PC + ++ A +GT GAIW G KR +S I TRA + + G
Sbjct: 10 PCPYVILNDFGAAFSMGTIGGAIWHSIKGWRNSPPGEKR-ISAIAAAKTRAPVLGGNFGV 68
Query: 59 YGFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAA-GTRRWTQ--VIGVAG 115
+G G+FS+ C ++ R++ D NA+IAG TG A+A G R T+ IG A
Sbjct: 69 WG-------GLFSTFDCAVKGVRRKEDPWNAIIAGFFTGGALAVRGGWRATRNGAIGCAC 121
Query: 116 IVSAFS 121
I++ F
Sbjct: 122 ILAVFE 127
>sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane translocase subunit Tim17-B
OS=Mus musculus GN=Timm17b PE=2 SV=1
Length = 172
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 68 GVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAA 102
G+FS+ CG+ R R + D N++ +GA+TGA +AA
Sbjct: 71 GLFSTIDCGLVRLRGKEDPWNSISSGALTGAVLAA 105
>sp|P39515|TIM17_YEAST Mitochondrial import inner membrane translocase subunit TIM17
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TIM17 PE=1 SV=1
Length = 158
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 64 GLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIA 101
G+ G+FS+ C ++ RK+ D NA+IAG TG A+A
Sbjct: 66 GVWGGLFSTFDCAVKAVRKREDPWNAIIAGFFTGGALA 103
>sp|Q9USM7|TIM23_SCHPO Mitochondrial import inner membrane translocase subunit tim23
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tim23 PE=3 SV=1
Length = 210
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 31/122 (25%)
Query: 1 MEEELIDAVPCSSLAV-------DAILRIGTA-------GAIWGLCAGPQLA-------- 38
+EE+ + +P S+A+ D GT+ G +WGL G +
Sbjct: 59 IEEDALSTLPGDSMAIPSRGWQDDLCYGTGTSYLSGLAIGGLWGLNEGMKKTKDITSTRL 118
Query: 39 RKRG-LSGITR-ASFVAKSIGKYGFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVT 96
R G L+G+TR FV S+G ++A V++ I R+++ W N++ AGA+T
Sbjct: 119 RLNGILNGVTRRGPFVGNSLG-------VLALVYNGINSLIGYKRQKHGWENSVAAGALT 171
Query: 97 GA 98
GA
Sbjct: 172 GA 173
>sp|Q2UAP8|TIM22_ASPOR Mitochondrial import inner membrane translocase subunit tim22
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=tim22 PE=3 SV=1
Length = 184
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 64 GLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTG 97
G+V ++S T C ++ R +ND N++I+G +TG
Sbjct: 115 GIVGALYSGTECCVEGLRAKNDLSNSVISGCITG 148
>sp|O44477|TIM17_CAEEL Probable mitochondrial import inner membrane translocase subunit
Tim17 OS=Caenorhabditis elegans GN=tim-17 PE=3 SV=1
Length = 181
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 38 ARKRGLSGITRASFVAKSIGKYGFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTG 97
A+ + L G+ R + ++ G Q G+FS+ C + RK+ D +N++++G +TG
Sbjct: 41 AKGKKLVGMMREVRMRSTL--TGVQFAAWGGMFSTIDCCLVAIRKKEDPINSIVSGGLTG 98
Query: 98 AAIA 101
A +A
Sbjct: 99 ALLA 102
>sp|Q9VNA0|TI17A_DROME Probable mitochondrial import inner membrane translocase subunit
Tim17 1 OS=Drosophila melanogaster GN=Tim17b1 PE=2 SV=2
Length = 179
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 62 QCGLVAG-------VFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGT 104
+ GLV G FS+ C + +RK+ D NA+I+GA TG +AA T
Sbjct: 58 RSGLVGGNFAVWGATFSAIDCSLVYFRKKEDPWNAIISGATTGGILAART 107
>sp|O35092|TI17A_RAT Mitochondrial import inner membrane translocase subunit Tim17-A
OS=Rattus norvegicus GN=Timm17a PE=2 SV=1
Length = 171
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 68 GVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAA 102
G+FS+ CG+ + R + D N++ +GA+TGA +AA
Sbjct: 71 GLFSTIDCGMVQIRGKEDPWNSITSGALTGAILAA 105
>sp|Q54K35|TIM17_DICDI Mitochondrial import inner membrane translocase subunit tim17
OS=Dictyostelium discoideum GN=timm17 PE=3 SV=1
Length = 183
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 50 SFVAKSIGKYGFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQ 109
+ + K K+G + +FS C + RK D VN + AGA+TG +AA + W
Sbjct: 47 ALLRKKSPKFGGNFAIWGSLFSGFDCTLSYIRKTEDTVNPIAAGALTGGILAARS-GWKH 105
Query: 110 VIGVA-------GIVSAFS 121
+ A GI+ AF
Sbjct: 106 SVQAAAFGGIFIGIIEAFQ 124
>sp|Q6NKU9|TI223_ARATH Mitochondrial import inner membrane translocase subunit TIM22-3
OS=Arabidopsis thaliana GN=TIM22-3 PE=2 SV=1
Length = 214
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Query: 26 GAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGVFSSTRCGIQRYRKQND 85
G+++G +G L +K+G G SFV G+ +++GV S C +++ R ++D
Sbjct: 62 GSVFGYGSG--LFKKKGFKG----SFV--DAGQSAKTFAVLSGVHSLVVCLLKQIRGKDD 113
Query: 86 WVNALIAGAVTGAAIA 101
+N +AG TG A++
Sbjct: 114 AINVGVAGCCTGLALS 129
>sp|Q9VGA2|TI17C_DROME Probable mitochondrial import inner membrane translocase subunit
Tim17 3 OS=Drosophila melanogaster GN=Tim17a1 PE=2 SV=1
Length = 222
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 70 FSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAA 102
FS+ C + YR++ D N++++GA TG +AA
Sbjct: 72 FSTVDCALVHYRQREDAWNSILSGAATGGILAA 104
>sp|Q54QM0|TIM22_DICDI Mitochondrial import inner membrane translocase subunit tim22
OS=Dictyostelium discoideum GN=timm22 PE=3 SV=1
Length = 179
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 65 LVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIA 101
++ V++ T C I++ R + D +N + AG TGA A
Sbjct: 113 IITLVYTGTECAIEKARGRTDKLNPIYAGCTTGAVFA 149
>sp|Q9VN97|TI17D_DROME Probable mitochondrial import inner membrane translocase subunit
Tim17 4 OS=Drosophila melanogaster GN=Tim17a2 PE=3 SV=1
Length = 224
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 70 FSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAA 102
FS+ C + YR++ D NA+++GA TG +AA
Sbjct: 72 FSTVDCVMVSYRQREDSWNAIVSGAATGGILAA 104
>sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane translocase subunit Tim17-A
OS=Mus musculus GN=Timm17a PE=2 SV=1
Length = 171
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 68 GVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAA 102
G+FS+ C + + R + D N++ +GA+TGA +AA
Sbjct: 71 GLFSTIDCSMVQIRGKEDPWNSITSGALTGAILAA 105
>sp|P14553|POLG_HAVS2 Genome polyprotein OS=Simian hepatitis A virus genotype V (isolate
AGM-27) PE=3 SV=2
Length = 2230
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 64 GLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIG--VAGIVSAFS 121
GL A + R G ++ W + AG +TG I +WT++ + +V F+
Sbjct: 860 GLTADTRALRRYGFSLAAGRSVWTLEMEAGVLTGRMIRLNDEKWTEIKDDKIVALVEKFT 919
Query: 122 AAADYSRTN 130
+ ++S+ N
Sbjct: 920 SNKNWSKVN 928
>sp|Q12328|TIM22_YEAST Mitochondrial import inner membrane translocase subunit TIM22
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TIM22 PE=1 SV=1
Length = 207
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 64 GLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIA 101
G + +++ C I+ R +ND N + AG TGA +A
Sbjct: 130 GYIGMIYAGVECVIESLRAKNDIYNGVTAGFFTGAGLA 167
>sp|Q2W2I2|RPOC_MAGSA DNA-directed RNA polymerase subunit beta' OS=Magnetospirillum
magneticum (strain AMB-1 / ATCC 700264) GN=rpoC PE=3 SV=1
Length = 1496
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 2 EEELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLAR-KRGLSGITRASFVAKSIGKYG 60
E ELIDA ++ + ++L + + G C G LAR R G A+SIG+ G
Sbjct: 962 EVELIDAAGIETVVIRSVLTCDSEEGVCGSCYGRDLARGTRVNVGEAVGVIAAQSIGEPG 1021
Query: 61 FQ 62
Q
Sbjct: 1022 TQ 1023
>sp|Q94EH2|TI222_ARATH Mitochondrial import inner membrane translocase subunit TIM22-2
OS=Arabidopsis thaliana GN=TIM22-2 PE=2 SV=1
Length = 210
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 26 GAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGVFSSTRCGIQRYRKQND 85
G+I+G +G L +K+G G SF G+ +++GV S C +++ R ++D
Sbjct: 62 GSIFGYGSG--LFKKKGFKG----SFA--DAGQSAKTFAVLSGVHSLVVCLLKQIRGKDD 113
Query: 86 WVNALIAGAVTGAAIA 101
+N +AG TG A++
Sbjct: 114 AINVGVAGCCTGLALS 129
>sp|Q8IN78|TIM22_DROME Mitochondrial import inner membrane translocase subunit Tim22
OS=Drosophila melanogaster GN=Tim22 PE=2 SV=1
Length = 195
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 59 YGFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVS 118
Y L+ VFS+ C I+ +R DW N AG +TG I +IG G +
Sbjct: 124 YAKNFALIGCVFSAVECTIESHRGVTDWKNGTYAGGITGGLIGLRAGVKAGIIGGLGF-A 182
Query: 119 AFSAAADY 126
AFS A DY
Sbjct: 183 AFSTAIDY 190
>sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane translocase subunit Tim17-A
OS=Homo sapiens GN=TIMM17A PE=1 SV=1
Length = 171
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 68 GVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAA 102
G+FS C + + R + D N++ +GA+TGA +AA
Sbjct: 71 GLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAA 105
>sp|Q9SP35|TI172_ARATH Mitochondrial import inner membrane translocase subunit TIM17-2
OS=Arabidopsis thaliana GN=TIM17-2 PE=1 SV=2
Length = 243
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 68 GVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIA 101
G+FS+ C + R++ D N++IAGA TG ++
Sbjct: 71 GLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLS 104
>sp|Q8HXG6|NDUAB_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11
OS=Bos taurus GN=NDUFA11 PE=1 SV=3
Length = 141
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 57 GKYGFQCGLVAGVFSSTRC-GIQRYRKQNDWVNALIAGAVTGAAIAAGTRRW 107
G+Y F + +F T C Q K +D +N LI G G + A TR +
Sbjct: 57 GRYTFTAAAIGAIFGLTSCISAQVREKPDDPLNYLIGGCAGGLILGARTRSY 108
>sp|Q9NAQ9|TIM22_CAEEL Mitochondrial import inner membrane translocase subunit tim-22
OS=Caenorhabditis elegans GN=tim-22 PE=3 SV=1
Length = 213
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 52 VAKSIGKYGFQCGLVAGVFSSTRCGIQRYRKQNDWVN 88
++ + YG G + +FS T C ++ R ++DW N
Sbjct: 136 MSSRMKSYGKNFGSIGLMFSGTECALETIRAKSDWRN 172
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,350,648
Number of Sequences: 539616
Number of extensions: 1402033
Number of successful extensions: 4045
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 4002
Number of HSP's gapped (non-prelim): 59
length of query: 130
length of database: 191,569,459
effective HSP length: 96
effective length of query: 34
effective length of database: 139,766,323
effective search space: 4752054982
effective search space used: 4752054982
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)