Query 032960
Match_columns 130
No_of_seqs 108 out of 625
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 08:04:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032960.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032960hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3225 Mitochondrial import i 100.0 2E-32 4.2E-37 195.7 4.3 125 4-129 35-165 (168)
2 TIGR00980 3a0801so1tim17 mitoc 100.0 6E-29 1.3E-33 181.8 12.4 124 1-127 1-127 (170)
3 PTZ00236 mitochondrial import 100.0 2.7E-28 5.8E-33 177.2 12.8 120 7-127 7-129 (164)
4 PF02466 Tim17: Tim17/Tim22/Ti 99.9 8.6E-27 1.9E-31 162.9 12.6 119 10-129 1-126 (128)
5 TIGR00983 3a0801s02tim23 mitoc 99.9 9E-25 2E-29 157.2 11.3 113 8-122 31-147 (149)
6 KOG1652 Mitochondrial import i 99.9 3.9E-25 8.4E-30 161.2 2.1 117 6-128 4-128 (183)
7 KOG3324 Mitochondrial import i 99.7 2.6E-18 5.6E-23 127.0 7.1 107 9-116 75-185 (206)
8 COG5596 TIM22 Mitochondrial im 99.6 2.9E-17 6.2E-22 120.6 -0.6 123 7-130 42-189 (191)
9 KOG4096 Uncharacterized conser 97.4 0.00041 8.9E-09 43.9 4.4 70 7-76 3-72 (75)
10 COG5596 TIM22 Mitochondrial im 97.3 3.2E-05 7E-10 57.3 -0.7 100 6-105 25-128 (191)
11 PF10247 Romo1: Reactive mitoc 97.3 0.00059 1.3E-08 42.9 4.5 64 9-72 1-64 (67)
12 KOG4608 Uncharacterized conser 96.9 0.00054 1.2E-08 52.8 1.8 75 54-128 125-206 (270)
13 KOG1398 Uncharacterized conser 94.9 0.032 6.9E-07 46.1 3.7 46 58-103 301-346 (460)
14 PTZ00236 mitochondrial import 89.1 5.2 0.00011 29.4 8.6 118 9-128 17-137 (164)
15 PF08560 DUF1757: Protein of u 83.3 15 0.00032 26.6 10.0 37 2-38 14-51 (155)
16 PF05818 TraT: Enterobacterial 77.0 4.2 9.2E-05 31.1 4.0 41 89-129 89-130 (215)
17 PF02466 Tim17: Tim17/Tim22/Ti 68.8 33 0.00071 23.1 7.4 25 9-33 4-28 (128)
18 PF13436 Gly-zipper_OmpA: Glyc 62.3 25 0.00055 24.1 5.0 40 84-124 50-91 (118)
19 PF10439 Bacteriocin_IIc: Bact 60.5 36 0.00078 20.7 5.5 33 84-116 23-55 (65)
20 KOG1398 Uncharacterized conser 59.5 27 0.00059 29.3 5.4 50 52-101 74-123 (460)
21 COG5336 Uncharacterized protei 59.1 44 0.00096 23.0 5.6 28 11-38 44-71 (116)
22 PRK13731 conjugal transfer sur 57.7 19 0.00041 28.1 4.1 49 80-128 106-159 (243)
23 PF07080 DUF1348: Protein of u 57.2 6.9 0.00015 27.9 1.5 17 73-89 9-25 (143)
24 COG3558 Uncharacterized protei 52.6 7.7 0.00017 27.3 1.1 17 73-89 11-27 (154)
25 PF12732 YtxH: YtxH-like prote 51.8 16 0.00034 22.8 2.4 21 17-37 3-23 (74)
26 PF13488 Gly-zipper_Omp: Glyci 49.6 49 0.0011 18.9 4.6 37 91-128 4-42 (46)
27 KOG0762 Mitochondrial carrier 42.3 4 8.6E-05 32.2 -1.7 20 83-102 101-120 (311)
28 PF13940 Ldr_toxin: Toxin Ldr, 41.3 24 0.00052 19.1 1.7 21 84-104 12-32 (35)
29 COG2979 Uncharacterized protei 36.5 48 0.001 25.5 3.3 39 83-121 31-73 (225)
30 PF14689 SPOB_a: Sensor_kinase 35.9 51 0.0011 19.8 2.8 24 72-95 8-34 (62)
31 PF00153 Mito_carr: Mitochondr 34.6 1.1E+02 0.0025 18.8 4.6 23 17-39 6-28 (95)
32 PRK10510 putative outer membra 32.3 65 0.0014 24.4 3.5 37 90-127 39-80 (219)
33 PF06916 DUF1279: Protein of u 30.8 1E+02 0.0022 19.9 3.8 36 48-84 2-43 (91)
34 PF03116 NQR2_RnfD_RnfE: NQR2, 30.3 1.3E+02 0.0029 24.1 5.1 43 71-113 53-99 (313)
35 smart00337 BCL BCL (B-Cell lym 29.7 1.3E+02 0.0029 19.6 4.3 39 44-82 29-68 (100)
36 PF03672 UPF0154: Uncharacteri 29.5 1.2E+02 0.0026 18.8 3.7 38 22-59 6-47 (64)
37 TIGR00980 3a0801so1tim17 mitoc 27.7 2.5E+02 0.0054 20.6 8.3 99 17-116 23-121 (170)
38 KOG3225 Mitochondrial import i 26.4 53 0.0011 24.1 1.9 100 20-120 47-152 (168)
39 PF12597 DUF3767: Protein of u 22.5 2.2E+02 0.0047 19.6 4.4 46 83-128 41-88 (118)
40 PF13441 Gly-zipper_YMGG: YMGG 22.5 90 0.002 17.9 2.1 27 90-116 7-35 (45)
41 PF05957 DUF883: Bacterial pro 21.6 1.9E+02 0.004 18.5 3.8 27 74-102 63-89 (94)
42 TIGR03789 pdsO proteobacterial 21.1 1E+02 0.0022 23.9 2.8 26 90-115 43-69 (239)
No 1
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2e-32 Score=195.71 Aligned_cols=125 Identities=27% Similarity=0.392 Sum_probs=112.2
Q ss_pred ccccCCCchHHHHHHHHHHHHHHHHHHhhccchhhhh-----cCCchhhhH-HHHHHHhccchhhhHHHHHHhhhHHHHH
Q 032960 4 ELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARK-----RGLSGITRA-SFVAKSIGKYGFQCGLVAGVFSSTRCGI 77 (130)
Q Consensus 4 ~~~~~~~C~~rt~~~~~~g~~~G~~~G~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~fa~~g~~fs~~ec~~ 77 (130)
.++.+++|+.|++.+.+.|..+|+++|+|.++++..+ ...+.++++ +++.+++.+++++|+++|.+|+++||.+
T Consensus 35 ~le~~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlvfsg~Ec~i 114 (168)
T KOG3225|consen 35 YLEEENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLVFSGVECLI 114 (168)
T ss_pred HHHHhcchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhhehhHHHHH
Confidence 3567789999999999999999999999999998433 234445554 6677777788899999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 032960 78 QRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAAADYSRT 129 (130)
Q Consensus 78 ~~~R~k~D~~Ns~~aG~~tGa~l~~~~g~~~~~~g~a~~~aa~s~a~d~~~~ 129 (130)
|++|.|+||+|.+++||+||+.++.|+||++.++||++| ++||++||+|++
T Consensus 115 E~~RAK~D~~NgaiaG~vtGg~l~~raGp~a~~~G~agf-a~fS~~id~y~~ 165 (168)
T KOG3225|consen 115 ESFRAKSDWYNGAIAGCVTGGSLGYRAGPKAAAIGCAGF-AAFSAAIDKYMR 165 (168)
T ss_pred HHHHhhhchhcceeeeeeeccchhhcccchhhhhchhHH-HHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999 999999999987
No 2
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=99.96 E-value=6e-29 Score=181.78 Aligned_cols=124 Identities=22% Similarity=0.195 Sum_probs=94.7
Q ss_pred CccccccCCCchHHHHHHHHHHHHHHHHHHhhccchh---hhhcCCchhhhHHHHHHHhccchhhhHHHHHHhhhHHHHH
Q 032960 1 MEEELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQL---ARKRGLSGITRASFVAKSIGKYGFQCGLVAGVFSSTRCGI 77 (130)
Q Consensus 1 ~~~~~~~~~~C~~rt~~~~~~g~~~G~~~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~fs~~ec~~ 77 (130)
|++.. +||||+|+++++..+..+|.+.|.+...++ +.+.+..-+.-++.+.++.++.+.+|++||++|+++||.+
T Consensus 1 ~~~~~--r~pcp~r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~rl~g~l~av~~rap~~g~~Fav~g~lys~~ec~i 78 (170)
T TIGR00980 1 MEEYT--REPCPYRILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKLVGAMRAIKTRAPVLGGNFAVWGGLFSTIDCAV 78 (170)
T ss_pred Ccccc--cCCCcchhHHhhhHHHHHHHHHHHHHHHHHHhhcCCccchhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 55555 899999999998655555554444444332 2222111111223344456667889999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHh
Q 032960 78 QRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAAADYS 127 (130)
Q Consensus 78 ~~~R~k~D~~Ns~~aG~~tGa~l~~~~g~~~~~~g~a~~~aa~s~a~d~~ 127 (130)
+++|+|||+||++++|++||++|++++|+++++.+|+.+ ++++++||+.
T Consensus 79 ~~~R~KeD~~NsiiAG~~TGa~l~~r~G~~a~~~~aa~g-g~~la~ie~~ 127 (170)
T TIGR00980 79 VAIRKKEDPWNSIISGFLTGAALAVRGGPRAMRGSAILG-ACILAVIEGV 127 (170)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHhccChHHHHHHHHHH-HHHHHHHHHH
Confidence 999999999999999999999999999998888888777 9999999985
No 3
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=99.96 E-value=2.7e-28 Score=177.24 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=88.3
Q ss_pred cCCCchHHHHHHH---HHHHHHHHHHHhhccchhhhhcCCchhhhHHHHHHHhccchhhhHHHHHHhhhHHHHHHHHHhh
Q 032960 7 DAVPCSSLAVDAI---LRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGVFSSTRCGIQRYRKQ 83 (130)
Q Consensus 7 ~~~~C~~rt~~~~---~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~fs~~ec~~~~~R~k 83 (130)
.+||||+|+++++ +.++.+|+..+.+...+.+.+.+..-+..++.+-++.++.+.+|+++|++|+++||.++++|+|
T Consensus 7 ~r~pcp~ri~dd~G~af~~G~vgG~~~~~~~G~rnsp~g~rl~g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~~~R~K 86 (164)
T PTZ00236 7 SREPCPDRIIEDMGGAFSMGCIGGFIWHFLKGMRNSPKGERFSGGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQYLRGK 86 (164)
T ss_pred CcCCCchHHHHhccHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4899999999987 3334434444444444455455443223333444466777889999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHh
Q 032960 84 NDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAAADYS 127 (130)
Q Consensus 84 ~D~~Ns~~aG~~tGa~l~~~~g~~~~~~g~a~~~aa~s~a~d~~ 127 (130)
||+||++++|++||++|++++|+++++.+++.. +++.++||.+
T Consensus 87 ~D~~Nsi~AG~~TGa~l~~r~G~~~~~~~a~~G-g~~~~~ie~~ 129 (164)
T PTZ00236 87 EDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFG-GILLGIIELV 129 (164)
T ss_pred CchHHHHHHHHHHHHHHHHhcChHHHHHHHHHH-HHHHHHHHHH
Confidence 999999999999999999999999776554433 6666666543
No 4
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=99.95 E-value=8.6e-27 Score=162.91 Aligned_cols=119 Identities=29% Similarity=0.403 Sum_probs=108.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHhhccchhhhh---cCCchhhhHHHHHHHhcc----chhhhHHHHHHhhhHHHHHHHHHh
Q 032960 10 PCSSLAVDAILRIGTAGAIWGLCAGPQLARK---RGLSGITRASFVAKSIGK----YGFQCGLVAGVFSSTRCGIQRYRK 82 (130)
Q Consensus 10 ~C~~rt~~~~~~g~~~G~~~G~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~fa~~g~~fs~~ec~~~~~R~ 82 (130)
||++|++++++.+..+|.++|.+.+.++... ...+.+++++.+++.+.+ .+.+|+.++++|+++||.+|++|+
T Consensus 1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~ 80 (128)
T PF02466_consen 1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRG 80 (128)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999999885322 244567788899999988 888999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHhhc
Q 032960 83 QNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAAADYSRT 129 (130)
Q Consensus 83 k~D~~Ns~~aG~~tGa~l~~~~g~~~~~~g~a~~~aa~s~a~d~~~~ 129 (130)
|||+||++++|++||++++.+.+++..+.+++.+ ++++.++|++++
T Consensus 81 k~D~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~-a~~~~~~~~~~~ 126 (128)
T PF02466_consen 81 KDDPWNSAIAGAAAGAVLGLRSGPRGMASGAALG-AAFAAAVEYYGR 126 (128)
T ss_pred ccccchhHHHHHHHHHHHHhccChHHHHHHHHHH-HHHHHHHHHHhc
Confidence 9999999999999999999999999999998888 999999999875
No 5
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=99.92 E-value=9e-25 Score=157.19 Aligned_cols=113 Identities=19% Similarity=0.082 Sum_probs=99.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhhccchhhhhcCCchhhhHHHHHHHhccch----hhhHHHHHHhhhHHHHHHHHHhh
Q 032960 8 AVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYG----FQCGLVAGVFSSTRCGIQRYRKQ 83 (130)
Q Consensus 8 ~~~C~~rt~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~fa~~g~~fs~~ec~~~~~R~k 83 (130)
.|+-.+++..+++.|.++|+++|++.+.++. +...+.|++++++++.+++++ .+|++++.+|+++||.++++|+|
T Consensus 31 ~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~-~~~~~~k~rln~~ln~~~~~g~~~G~~~g~~g~lys~~e~~i~~~R~k 109 (149)
T TIGR00983 31 FEDLCFGTGTCYLTGLAIGALNGLRLGLKET-QSMPWTKLRLNQILNMVTRRGPFWGNTLGILALVYNGINSIIEATRGK 109 (149)
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHHHHhhC-CCCCcHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566677888899999999999999998864 334566888999999888775 59999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHH
Q 032960 84 NDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSA 122 (130)
Q Consensus 84 ~D~~Ns~~aG~~tGa~l~~~~g~~~~~~g~a~~~aa~s~ 122 (130)
||+||++++|++||++|++++|+++++++|++. ++++.
T Consensus 110 ~D~~Nsv~AGa~TGal~~~~~G~r~~~~g~~~G-~~l~~ 147 (149)
T TIGR00983 110 HDDFNSVAAGALTGALYKSTRGLRGMARSGALG-ATAAG 147 (149)
T ss_pred chhhHhHHHHHHHHHHHHhccChHHHHHHhHHH-HHHhh
Confidence 999999999999999999999999999998877 55544
No 6
>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.9e-25 Score=161.16 Aligned_cols=117 Identities=25% Similarity=0.279 Sum_probs=95.1
Q ss_pred ccCCCchHHHHHHHHH---HHHHHH-----HHHhhccchhhhhcCCchhhhHHHHHHHhccchhhhHHHHHHhhhHHHHH
Q 032960 6 IDAVPCSSLAVDAILR---IGTAGA-----IWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGVFSSTRCGI 77 (130)
Q Consensus 6 ~~~~~C~~rt~~~~~~---g~~~G~-----~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~fs~~ec~~ 77 (130)
+.+||||.|+++++-. ++++|+ +.|+++++... ..+..+..+..+.+..+.+||+||++||.+||.+
T Consensus 4 ~sr~pcp~riv~d~g~afamg~igG~~f~~ikG~~nap~G~-----r~~gg~~av~~~ap~~ggsFAvwgglfSt~dC~L 78 (183)
T KOG1652|consen 4 YSREPCPIRIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSGA-----RLVGGISAVKMRAPQSGGSFAVWGGLFSTVDCAL 78 (183)
T ss_pred ccCCCCCceeeccccchhhhcccccceeeeeeeeecCCccc-----ccccchhhhhccCcccccceeeeechhhHHHHHH
Confidence 4589999999998733 333333 44444444333 2333456677889999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHhh
Q 032960 78 QRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAAADYSR 128 (130)
Q Consensus 78 ~~~R~k~D~~Ns~~aG~~tGa~l~~~~g~~~~~~g~a~~~aa~s~a~d~~~ 128 (130)
..+|+|||+||++++|++||++|+.|+++++++-+|+.+ +++++.+|-+.
T Consensus 79 v~~R~KeDpwNsivsGa~TGg~La~r~g~~a~~~sa~~~-g~~lamieg~g 128 (183)
T KOG1652|consen 79 VAIRKKEDPWNSIVSGAATGGLLAARGGPKAMLTSAITG-GLLLAMIEGLG 128 (183)
T ss_pred HHHhcccchHHHHHHHhhccceeeccccHHHHHHHHHHH-HHHHHHHHhHH
Confidence 999999999999999999999999999999999998888 99999998653
No 7
>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=2.6e-18 Score=127.02 Aligned_cols=107 Identities=26% Similarity=0.237 Sum_probs=95.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhccchhhhhcCCchhhhHHHHHHHhccchh----hhHHHHHHhhhHHHHHHHHHhhh
Q 032960 9 VPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGF----QCGLVAGVFSSTRCGIQRYRKQN 84 (130)
Q Consensus 9 ~~C~~rt~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~fa~~g~~fs~~ec~~~~~R~k~ 84 (130)
|+..+.|.-.++.|.++|+++|+..+..+... ..+.|++.++++++.++++. +.++++.+|+.+|..++..|+||
T Consensus 75 E~l~f~tG~~yl~G~~iGa~~G~~~Glk~~e~-~~~~Klr~nrILN~~t~~G~~~gN~lG~laL~YsaiesgI~~~R~~d 153 (206)
T KOG3324|consen 75 ENLTFGTGWAYLTGSAIGAFNGLILGLKNTEN-GASGKLRLNRILNSVTRRGRFWGNTLGSLALMYSAIESGIEATRGKD 153 (206)
T ss_pred hhhheeccchhccchhhhhHHHHHHhhhcCCC-CCccchhHHHHhhhccccccccccchhHHHHHHHHHHHHHHHhhccc
Confidence 56667777788999999999999988776533 77889999999999999865 67899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhcCcchhHHHHHHHHH
Q 032960 85 DWVNALIAGAVTGAAIAAGTRRWTQVIGVAGI 116 (130)
Q Consensus 85 D~~Ns~~aG~~tGa~l~~~~g~~~~~~g~a~~ 116 (130)
|++|+++||++||+++...+|++++.++.+..
T Consensus 154 d~lnsv~AGalTGalyrs~~Glr~~av~ga~g 185 (206)
T KOG3324|consen 154 DDLNSVAAGALTGALYRSTRGLRAAAVAGAVG 185 (206)
T ss_pred cchhhhhhhhhhhhhhhcCCCchHHHHHHHHH
Confidence 99999999999999999999999999987765
No 8
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.9e-17 Score=120.57 Aligned_cols=123 Identities=23% Similarity=0.203 Sum_probs=104.6
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHhhccchhhhhc---------------------CCchhhhHHHHHHHhccc----hh
Q 032960 7 DAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKR---------------------GLSGITRASFVAKSIGKY----GF 61 (130)
Q Consensus 7 ~~~~C~~rt~~~~~~g~~~G~~~G~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~----~~ 61 (130)
+-+.|+.+++.+.+.|-.+|...|.+.++...... ..+.+.|.+..++.+++. +.
T Consensus 42 ~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n~~~rg~ftG~ 121 (191)
T COG5596 42 FSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTGK 121 (191)
T ss_pred hhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccceeeccccchHHHHHhhcccccccccccccc
Confidence 34479999999988888888888888876542111 124567777888888876 45
Q ss_pred hhHHHHHHhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHhhcC
Q 032960 62 QCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAFSAAADYSRTN 130 (130)
Q Consensus 62 ~fa~~g~~fs~~ec~~~~~R~k~D~~Ns~~aG~~tGa~l~~~~g~~~~~~g~a~~~aa~s~a~d~~~~~ 130 (130)
+|++.|.+|.+.||.++.+|+|||+.|++.+|..||+.+..+.+++++.++.+.+ +++++.++.++|.
T Consensus 122 n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g~qa~~~~~a~~-aa~s~~~~~~~~~ 189 (191)
T COG5596 122 NLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGPQAMPMGGAGF-AAFSAGITLAMKS 189 (191)
T ss_pred ccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhccccccccCccch-hhhhhhHHhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999 9999999988763
No 9
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.00041 Score=43.95 Aligned_cols=70 Identities=23% Similarity=0.274 Sum_probs=58.3
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHhhccchhhhhcCCchhhhHHHHHHHhccchhhhHHHHHHhhhHHHH
Q 032960 7 DAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGVFSSTRCG 76 (130)
Q Consensus 7 ~~~~C~~rt~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~fs~~ec~ 76 (130)
..++|..|.-+.++.|.++|...|++++.+.....+++.+..++.+-+.+-..+.+|+.+=++=+++.|.
T Consensus 3 ~qpSc~dKikmG~~mG~avG~a~G~lfGgf~~lR~g~~g~~~vr~iGkt~~~SagtFG~FM~igs~Ir~~ 72 (75)
T KOG4096|consen 3 QQPSCFDKIKMGLMMGGAVGGATGALFGGFAALRYGPRGRGLVRTIGKTMLQSAGTFGLFMGIGSGIRCG 72 (75)
T ss_pred CCccHHHHHHHHHHHHhhhhhhhhhhccchhheeecCChhHHHHHHhHHHHhccchhhhhhhhhhheecC
Confidence 4689999999999999999999999999998877777776666666677777788998887777777664
No 10
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=3.2e-05 Score=57.30 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=67.6
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHHhhccchhhhhcCC---chhhhHHHHHHHhccchhhhH-HHHHHhhhHHHHHHHHH
Q 032960 6 IDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGL---SGITRASFVAKSIGKYGFQCG-LVAGVFSSTRCGIQRYR 81 (130)
Q Consensus 6 ~~~~~C~~rt~~~~~~g~~~G~~~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~fa-~~g~~fs~~ec~~~~~R 81 (130)
|..+||+.-.+.++....-.+.+.+...+..+.-.-+. .....+........-.+.+|+ ++|++++.++|..+++|
T Consensus 25 ~e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~~~r~q 104 (191)
T COG5596 25 EERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPFRLQ 104 (191)
T ss_pred hhcCchhhhHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccceeeccccchHHHH
Confidence 36789999999887554444444443333322111111 111111112224445577898 89999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHhcCcc
Q 032960 82 KQNDWVNALIAGAVTGAAIAAGTR 105 (130)
Q Consensus 82 ~k~D~~Ns~~aG~~tGa~l~~~~g 105 (130)
.|.|.||....|+.||..++....
T Consensus 105 ~~~~~~n~~~rg~ftG~n~GvlGl 128 (191)
T COG5596 105 LKEQLNNAGKRGFFTGKNLGVLGL 128 (191)
T ss_pred Hhhccccccccccccccccceeee
Confidence 999999999999999999888776
No 11
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=97.28 E-value=0.00059 Score=42.87 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=49.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhccchhhhhcCCchhhhHHHHHHHhccchhhhHHHHHHhhh
Q 032960 9 VPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGVFSS 72 (130)
Q Consensus 9 ~~C~~rt~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~fs~ 72 (130)
++|.+|.-+.+..|+++|...|++.+.++....+.+.+..++.+-+.+-..+.+|+.+=++=+.
T Consensus 1 psc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~~~~~~~~lg~~~l~sg~tFG~Fm~iGs~ 64 (67)
T PF10247_consen 1 PSCFDKIKMGFMMGGAVGGAFGALFGTFSAFRYGARGRGLMRTLGKYMLGSGATFGFFMSIGSV 64 (67)
T ss_pred CcHHHHHHHHHHHhhHHHhhhhhhhhhHHHhccCCCCcchHhHHhHHHhcchhHHHHHHhhhcc
Confidence 5899999999999999999999999999877766665555666666666667777765444333
No 12
>KOG4608 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.00054 Score=52.84 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=53.2
Q ss_pred HHhccchh----hhHHHHHHhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCcchhHHHHH---HHHHHHHHHHHHHH
Q 032960 54 KSIGKYGF----QCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIG---VAGIVSAFSAAADY 126 (130)
Q Consensus 54 ~~~~~~~~----~fa~~g~~fs~~ec~~~~~R~k~D~~Ns~~aG~~tGa~l~~~~g~~~~~~g---~a~~~aa~s~a~d~ 126 (130)
+...|.+. ..|++.+.|-++...+.-+|+|+|.||-+++|.+||+++...-|++-.+-+ ++..|+..+.....
T Consensus 125 r~farGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~gL~g~aa~vilG~~lG~tv~~~l~l 204 (270)
T KOG4608|consen 125 RGFARGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVGLRGLAAGVILGALLGTTVGGLLML 204 (270)
T ss_pred HHHhhccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehhhHHHhhcceeehhhcchHHHHHHH
Confidence 33555554 446788888889999999999999999999999999999988875433322 12333455555444
Q ss_pred hh
Q 032960 127 SR 128 (130)
Q Consensus 127 ~~ 128 (130)
++
T Consensus 205 ~q 206 (270)
T KOG4608|consen 205 FQ 206 (270)
T ss_pred HH
Confidence 44
No 13
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=0.032 Score=46.07 Aligned_cols=46 Identities=20% Similarity=0.369 Sum_probs=39.0
Q ss_pred cchhhhHHHHHHhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcC
Q 032960 58 KYGFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAG 103 (130)
Q Consensus 58 ~~~~~fa~~g~~fs~~ec~~~~~R~k~D~~Ns~~aG~~tGa~l~~~ 103 (130)
+.+.-.+.+-++|-.+.|.+.+++.+||..|++.||.+++--+...
T Consensus 301 qlg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~Smmfy 346 (460)
T KOG1398|consen 301 QLGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLSMMFY 346 (460)
T ss_pred hhhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhheeeec
Confidence 3455668899999999999999999999999999999987655444
No 14
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=89.10 E-value=5.2 Score=29.35 Aligned_cols=118 Identities=10% Similarity=-0.046 Sum_probs=75.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhccchhhhhcCCchhhhHH-HHHHHhccchhhhHHHHHHhhhHHHHHHHHHhhhhhH
Q 032960 9 VPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRAS-FVAKSIGKYGFQCGLVAGVFSSTRCGIQRYRKQNDWV 87 (130)
Q Consensus 9 ~~C~~rt~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~fa~~g~~fs~~ec~~~~~R~k~D~~ 87 (130)
++|-.--..+.+.|+..+.+.|+.+++......+.. ..++ ..-...++.+..-++..++...++..=+|-=-.+-.+
T Consensus 17 dd~G~af~~G~vgG~~~~~~~G~rnsp~g~rl~g~l--~~~~~rap~~g~~FAv~G~~ys~~ec~~~~~R~K~D~~Nsi~ 94 (164)
T PTZ00236 17 EDMGGAFSMGCIGGFIWHFLKGMRNSPKGERFSGGF--YLLRKRAPILGGNFAIWGGLFSTFDCTLQYLRGKEDHWNAIA 94 (164)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHH--HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 345555667788999999999999998765443211 1111 1222223334444566667777777666666667777
Q ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHH--HHHHHHHHHhh
Q 032960 88 NALIAGAVTGAAIAAGTRRWTQVIGVAGIV--SAFSAAADYSR 128 (130)
Q Consensus 88 Ns~~aG~~tGa~l~~~~g~~~~~~g~a~~~--aa~s~a~d~~~ 128 (130)
-..+.|.+-+.--+.++-..++++|++.++ ..++.++++++
T Consensus 95 AG~~TGa~l~~r~G~~~~~~~a~~Gg~~~~~ie~~~i~~~~~~ 137 (164)
T PTZ00236 95 SGFFTGGVLAIRGGWRSAVRNAIFGGILLGIIELVSIGMNRRQ 137 (164)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777766777777766631 67778888765
No 15
>PF08560 DUF1757: Protein of unknown function (DUF1757); InterPro: IPR013869 This entry shows proteins that are about 150 amino acids in length and have no known function.
Probab=83.29 E-value=15 Score=26.63 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=31.6
Q ss_pred ccccccCCCchHHHHHHHHHHHHHHHHHHhhc-cchhh
Q 032960 2 EEELIDAVPCSSLAVDAILRIGTAGAIWGLCA-GPQLA 38 (130)
Q Consensus 2 ~~~~~~~~~C~~rt~~~~~~g~~~G~~~G~~~-~~~~~ 38 (130)
|++++.-+|.+..+.--.+++.-+|.+.|.+. .|...
T Consensus 14 ~~l~~iP~P~~el~iHvt~k~~q~gs~lGsl~~~Pi~~ 51 (155)
T PF08560_consen 14 EELQDIPNPKTELTIHVTFKGAQAGSFLGSLIVGPIYR 51 (155)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 57788899999999999999999999999887 55543
No 16
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=76.95 E-value=4.2 Score=31.10 Aligned_cols=41 Identities=32% Similarity=0.242 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhcCcc-hhHHHHHHHHHHHHHHHHHHHhhc
Q 032960 89 ALIAGAVTGAAIAAGTR-RWTQVIGVAGIVSAFSAAADYSRT 129 (130)
Q Consensus 89 s~~aG~~tGa~l~~~~g-~~~~~~g~a~~~aa~s~a~d~~~~ 129 (130)
+.++|.++|+.++...+ ....++|..+.+++...+.|.+.+
T Consensus 89 ga~~Ga~~G~~~g~~~~~~~g~~~G~GlaGalig~~ada~v~ 130 (215)
T PF05818_consen 89 GALAGAATGAAIGAYNSGSAGAAIGAGLAGALIGMIADAMVE 130 (215)
T ss_pred hHHHHhHHhhhhccccCCccchhhhhhHHHhHHHHHHhhhcc
Confidence 44555555555554433 555667755555778887776643
No 17
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=68.78 E-value=33 Score=23.15 Aligned_cols=25 Identities=8% Similarity=-0.020 Sum_probs=21.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhhc
Q 032960 9 VPCSSLAVDAILRIGTAGAIWGLCA 33 (130)
Q Consensus 9 ~~C~~rt~~~~~~g~~~G~~~G~~~ 33 (130)
+.|...++.+++.|...|...+...
T Consensus 4 ~~~~~~~~~g~~~G~~~G~~~~~~~ 28 (128)
T PF02466_consen 4 ERILDSTGKGFVAGAVFGGFIGAIS 28 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999999999999999883
No 18
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=62.34 E-value=25 Score=24.09 Aligned_cols=40 Identities=35% Similarity=0.303 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHHHHhcCcch--hHHHHHHHHHHHHHHHHH
Q 032960 84 NDWVNALIAGAVTGAAIAAGTRR--WTQVIGVAGIVSAFSAAA 124 (130)
Q Consensus 84 ~D~~Ns~~aG~~tGa~l~~~~g~--~~~~~g~a~~~aa~s~a~ 124 (130)
++.....+.|++.|++++.-.|. ...++|+++. +++.++.
T Consensus 50 ~~~~~ga~~GA~~GA~~Ga~~G~~~~ga~~GAa~G-a~~G~~~ 91 (118)
T PF13436_consen 50 ENTAGGAAIGAAAGAAIGAIIGGNGRGAAIGAAAG-AAVGAAA 91 (118)
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHH-HHHHHHh
Confidence 45555666677778888776663 4455554443 4443333
No 19
>PF10439 Bacteriocin_IIc: Bacteriocin class II with double-glycine leader peptide; InterPro: IPR019493 Bacteriocins are proteinaceous toxins produced by bacteria to inhibit the growth of similar or closely related strains. The producer bacteria are protected from the effects of their own bacteriocins by production of a specific immunity protein which is co-transcribed with the genes encoding the bacteriocins, e.g. IPR015046 from INTERPRO. The bacteriocins are structurally more specific than their immunity-protein counterparts. Typically, production of the bacteriocin gene is from within an operon carrying up to 6 genes including a typical two-component regulatory system (R and H), a small peptide pheromone (C), and a dedicated ABC transporter (A and -B) as well as an immunity protein []. The ABC transporter is thought to recognise the N termini of both the pheromone and the bacteriocins and to transport these peptides across the cytoplasmic membrane, concurrent with cleavage at the conserved double-glycine motif. Cleaved extracellular C can then bind to the sensor kinase, H, resulting in activation of R and up-regulation of the entire gene cluster via binding to consensus sequences within each promoter []. It seems likely that the whole regulon is carried on a transmissible plasmid which is passed between closely related Firmicute species since many clinical isolates from different Firmicutes can produce at least two bacteriocins, and the same bacteriocins can be produced by different species. The proteins in this entry include amylovorin-L, lactacin-F and salivaricin CRL 1328, all of them class IIb two-peptide bacteriocins.
Probab=60.52 E-value=36 Score=20.73 Aligned_cols=33 Identities=24% Similarity=0.185 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHHHHHhcCcchhHHHHHHHHH
Q 032960 84 NDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGI 116 (130)
Q Consensus 84 ~D~~Ns~~aG~~tGa~l~~~~g~~~~~~g~a~~ 116 (130)
.+.+..+++++++|++.+...++....+.++..
T Consensus 23 ~~~~~~~~~~~~~G~~~G~~~g~~~g~~~Ga~~ 55 (65)
T PF10439_consen 23 GNCVGGVGGGAAGGAAAGAAGGPPVGAVAGAIV 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 556778889999999999998864333333444
No 20
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.52 E-value=27 Score=29.30 Aligned_cols=50 Identities=20% Similarity=0.319 Sum_probs=39.3
Q ss_pred HHHHhccchhhhHHHHHHhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 032960 52 VAKSIGKYGFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIA 101 (130)
Q Consensus 52 ~~~~~~~~~~~fa~~g~~fs~~ec~~~~~R~k~D~~Ns~~aG~~tGa~l~ 101 (130)
+...+-+.+.-+.--...|-...|.+.|+++|.-+||+..++++.+.-.+
T Consensus 74 ~~~~~cqs~lflvtn~~~f~al~C~lRkwlgkftp~t~glv~s~las~ia 123 (460)
T KOG1398|consen 74 VREEACQSGLFLVTNTGSFHALRCCLRKWLGKFTPLTSGLVGSVLASSIA 123 (460)
T ss_pred HHHHHHhhceeeeechHHHHHHHHHHHHHhcccCcccHHHHHHHHhhhhh
Confidence 33445555666666777888899999999999999999999998776443
No 21
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.12 E-value=44 Score=23.03 Aligned_cols=28 Identities=11% Similarity=-0.144 Sum_probs=23.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhhccchhh
Q 032960 11 CSSLAVDAILRIGTAGAIWGLCAGPQLA 38 (130)
Q Consensus 11 C~~rt~~~~~~g~~~G~~~G~~~~~~~~ 38 (130)
=+.|....+++|..+|.+.|.+..-+..
T Consensus 44 ~a~klssefIsGilVGa~iG~llD~~ag 71 (116)
T COG5336 44 QAFKLSSEFISGILVGAGIGWLLDKFAG 71 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4677888999999999999999876654
No 22
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=57.66 E-value=19 Score=28.07 Aligned_cols=49 Identities=31% Similarity=0.420 Sum_probs=28.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhcC-----cchhHHHHHHHHHHHHHHHHHHHhh
Q 032960 80 YRKQNDWVNALIAGAVTGAAIAAG-----TRRWTQVIGVAGIVSAFSAAADYSR 128 (130)
Q Consensus 80 ~R~k~D~~Ns~~aG~~tGa~l~~~-----~g~~~~~~g~a~~~aa~s~a~d~~~ 128 (130)
.|..+-+.+.-++|.++|+.+|.. .+....++|.++.++++..+.|.+.
T Consensus 106 ~~~a~~~L~~Gy~ga~~Gaa~G~~~~~y~~~~ag~~~G~Glagglig~~ada~v 159 (243)
T PRK13731 106 LRESQGWLNRGYEGAAVGAALGAGITGYNSNSAGATLGVGLAAGLVGMAADAMV 159 (243)
T ss_pred HHHHHHHHhhchhhHHHHHHhhhhhhcccCCcchhhHHHHHHHHHHHHHhhhhh
Confidence 455555555555566666655443 3344556665556577777777654
No 23
>PF07080 DUF1348: Protein of unknown function (DUF1348); InterPro: IPR009783 This family consists of several highly conserved hypothetical proteins of around 150 residues in length. The function of this family is unknown.; PDB: 2IMJ_B.
Probab=57.22 E-value=6.9 Score=27.94 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhhhhHHH
Q 032960 73 TRCGIQRYRKQNDWVNA 89 (130)
Q Consensus 73 ~ec~~~~~R~k~D~~Ns 89 (130)
.|.+++|+|..+|.||+
T Consensus 9 ~etA~~KVr~AEdaWNs 25 (143)
T PF07080_consen 9 RETAIQKVRAAEDAWNS 25 (143)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccc
Confidence 48899999999999997
No 24
>COG3558 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.58 E-value=7.7 Score=27.34 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhhhHHH
Q 032960 73 TRCGIQRYRKQNDWVNA 89 (130)
Q Consensus 73 ~ec~~~~~R~k~D~~Ns 89 (130)
.|.+++|+|-.+|.||+
T Consensus 11 ~eta~~kvr~aed~wns 27 (154)
T COG3558 11 AETAIQKVRMAEDAWNS 27 (154)
T ss_pred HHHHHHHHHHhHhcccc
Confidence 47889999999999997
No 25
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=51.84 E-value=16 Score=22.75 Aligned_cols=21 Identities=33% Similarity=0.300 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhhccchh
Q 032960 17 DAILRIGTAGAIWGLCAGPQL 37 (130)
Q Consensus 17 ~~~~~g~~~G~~~G~~~~~~~ 37 (130)
.+++.|+++|++.|++.+|..
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP~s 23 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAPKS 23 (74)
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 456888889999999988764
No 26
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=49.64 E-value=49 Score=18.94 Aligned_cols=37 Identities=38% Similarity=0.282 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCcc--hhHHHHHHHHHHHHHHHHHHHhh
Q 032960 91 IAGAVTGAAIAAGTR--RWTQVIGVAGIVSAFSAAADYSR 128 (130)
Q Consensus 91 ~aG~~tGa~l~~~~g--~~~~~~g~a~~~aa~s~a~d~~~ 128 (130)
.-|++.|++++...+ ....+++.++. ++.-..+.+.+
T Consensus 4 ~iGA~~Ga~iG~~~g~~~~ga~iGa~vG-a~~G~~ig~~~ 42 (46)
T PF13488_consen 4 AIGAAAGAAIGAATGGPGKGAAIGAAVG-AAVGAAIGNYM 42 (46)
T ss_pred HHHHHHHHHHHHHhCCchhhHHHHHHHH-HHHHHHHHHHH
Confidence 345666777666655 35555565444 66666666554
No 27
>KOG0762 consensus Mitochondrial carrier protein [Energy production and conversion]
Probab=42.34 E-value=4 Score=32.15 Aligned_cols=20 Identities=20% Similarity=0.503 Sum_probs=15.5
Q ss_pred hhhhHHHHHHHHHHHHHHhc
Q 032960 83 QNDWVNALIAGAVTGAAIAA 102 (130)
Q Consensus 83 k~D~~Ns~~aG~~tGa~l~~ 102 (130)
.|.+.|.+++|+++|++=+.
T Consensus 101 pdS~~s~fl~G~aaGa~Q~v 120 (311)
T KOG0762|consen 101 PDSYTSHFLGGVAAGAAQSV 120 (311)
T ss_pred CCcHHHHHHHHHHHhhhhhh
Confidence 45568889999999987544
No 28
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=41.29 E-value=24 Score=19.10 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHHHHHHhcCc
Q 032960 84 NDWVNALIAGAVTGAAIAAGT 104 (130)
Q Consensus 84 ~D~~Ns~~aG~~tGa~l~~~~ 104 (130)
||.--++++|.+++.++++-.
T Consensus 12 hDLAAP~iagIi~s~iv~w~~ 32 (35)
T PF13940_consen 12 HDLAAPIIAGIIASLIVGWLR 32 (35)
T ss_pred HHhHhHHHHHHHHHHHHHHHH
Confidence 888899999999999988643
No 29
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.47 E-value=48 Score=25.48 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=27.2
Q ss_pred hhhhHHHHHHHHHHHHHHhcCcc----hhHHHHHHHHHHHHHH
Q 032960 83 QNDWVNALIAGAVTGAAIAAGTR----RWTQVIGVAGIVSAFS 121 (130)
Q Consensus 83 k~D~~Ns~~aG~~tGa~l~~~~g----~~~~~~g~a~~~aa~s 121 (130)
..+..|++.+|++.+.+|+-+++ -+..-+|.+...++++
T Consensus 31 ~~~~l~p~~~GALaa~Llg~K~~rk~~~k~~k~GglAAlG~la 73 (225)
T COG2979 31 LGSLLNPLGGGALAAMLLGNKSARKLGGKATKLGGLAALGALA 73 (225)
T ss_pred cccccCcchhHHHHHHHHcCcchHHHHhhHhhhhhHHHHHHHH
Confidence 56788999999999999999995 3344444443334443
No 30
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.94 E-value=51 Score=19.80 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=16.9
Q ss_pred hHHHHHHHHHh-hhhhHHHH--HHHHH
Q 032960 72 STRCGIQRYRK-QNDWVNAL--IAGAV 95 (130)
Q Consensus 72 ~~ec~~~~~R~-k~D~~Ns~--~aG~~ 95 (130)
-++..++.+|. +||+.|-+ +.|.+
T Consensus 8 ~~~~~~~~lR~~RHD~~NhLqvI~gll 34 (62)
T PF14689_consen 8 ELEELIDSLRAQRHDFLNHLQVIYGLL 34 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45667778887 69999974 45543
No 31
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ]. Such proteins include: ADP, ATP carrier protein (ADP/ATP translocase); 2-oxoglutarate/malate carrier protein; phosphate carrier protein; tricarboxylate transport protein (or citrate transport protein); Graves disease carrier protein; yeast mitochondrial proteins MRS3 and MRS4; yeast mitochondrial FAD carrier protein; and many others. Structurally, these proteins can consist of up to three tandem repeats of a domain of approximately 100 residues, each domain containing two transmembrane regions.; PDB: 2LCK_A 2C3E_A 1OKC_A.
Probab=34.59 E-value=1.1e+02 Score=18.80 Aligned_cols=23 Identities=26% Similarity=0.134 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhhccchhhh
Q 032960 17 DAILRIGTAGAIWGLCAGPQLAR 39 (130)
Q Consensus 17 ~~~~~g~~~G~~~G~~~~~~~~~ 39 (130)
..++.|.+.|.+--++.-|.+..
T Consensus 6 ~~~~~g~~ag~~~~~~~~Pld~i 28 (95)
T PF00153_consen 6 ANFIAGALAGAISTLVTYPLDTI 28 (95)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Confidence 45566677777777777777653
No 32
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=32.31 E-value=65 Score=24.41 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhcCcc-----hhHHHHHHHHHHHHHHHHHHHh
Q 032960 90 LIAGAVTGAAIAAGTR-----RWTQVIGVAGIVSAFSAAADYS 127 (130)
Q Consensus 90 ~~aG~~tGa~l~~~~g-----~~~~~~g~a~~~aa~s~a~d~~ 127 (130)
...|.++|++++...+ .+.+++|+++. +++.+.+-|+
T Consensus 39 a~~Ga~~Ga~~G~~~g~~~~~~~~a~~ga~~G-~~~G~~~g~~ 80 (219)
T PRK10510 39 AGIGSLVGAGIGALSSSKKDRGKGALIGAAAG-AALGGGVGYY 80 (219)
T ss_pred hHHHHHHHHHHHhhhcCCCcccchhhhHhHHH-hhhhhhhhhh
Confidence 3444555666555433 12344454433 4444444443
No 33
>PF06916 DUF1279: Protein of unknown function (DUF1279); InterPro: IPR009688 This entry represents the C terminus (approx. 120 residues) of a number of eukaryotic proteins of unknown function.
Probab=30.83 E-value=1e+02 Score=19.91 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=24.2
Q ss_pred hHHHHHHHhccchh------hhHHHHHHhhhHHHHHHHHHhhh
Q 032960 48 RASFVAKSIGKYGF------QCGLVAGVFSSTRCGIQRYRKQN 84 (130)
Q Consensus 48 ~~~~~~~~~~~~~~------~fa~~g~~fs~~ec~~~~~R~k~ 84 (130)
++++.+++-|.-+. .+.-++..|..++..++ ++.-.
T Consensus 2 r~K~l~k~YG~~~l~vy~~~s~~~~~~~y~~v~~GvD-v~~~~ 43 (91)
T PF06916_consen 2 RLKQLFKKYGYVALGVYLGLSFISLGSCYLAVSSGVD-VIALL 43 (91)
T ss_pred cHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHH
Confidence 56777777776543 56668888888777666 55533
No 34
>PF03116 NQR2_RnfD_RnfE: NQR2, RnfD, RnfE family; InterPro: IPR004338 This family of proteins describes the Nqr2 (NqrB) subunit of the bacterial 6-subunit sodium-translocating NADH-ubiquinone oxidoreductase (i.e. a respiration linked sodium pump). In Vibrio cholerae, it negatively regulates the expression of virulence factors through inhibiting (by an unknown mechanism) the transcription of the transcriptional activator ToxT []. The family also includes RnfD, which is involved in nitrogen fixation. The similarity of RnfD to NADH-ubiquinone oxidoreductases was previously noted [].; GO: 0006810 transport, 0016020 membrane
Probab=30.30 E-value=1.3e+02 Score=24.08 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHhhhh----hHHHHHHHHHHHHHHhcCcchhHHHHHH
Q 032960 71 SSTRCGIQRYRKQND----WVNALIAGAVTGAAIAAGTRRWTQVIGV 113 (130)
Q Consensus 71 s~~ec~~~~~R~k~D----~~Ns~~aG~~tGa~l~~~~g~~~~~~g~ 113 (130)
-.+|...+++|+|+. ..++++-|.+-+..+-.....+..+++.
T Consensus 53 ~l~E~l~~~l~~~~~~~~~d~sa~vTglLlal~LP~~~P~w~v~ig~ 99 (313)
T PF03116_consen 53 VLAEALFAKLRKRPIPTLKDLSAVVTGLLLALLLPPSVPLWVVAIGS 99 (313)
T ss_pred HHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHhCCCCCcHHHHHHHH
Confidence 357999999999884 4566777777777776666666665553
No 35
>smart00337 BCL BCL (B-Cell lymphoma); contains BH1, BH2 regions. (BH1, BH2, (BH3 (one helix only)) and not BH4(one helix only)). Involved in apoptosis regulation
Probab=29.66 E-value=1.3e+02 Score=19.63 Aligned_cols=39 Identities=18% Similarity=0.102 Sum_probs=31.4
Q ss_pred chhhhHHHHHHHhccch-hhhHHHHHHhhhHHHHHHHHHh
Q 032960 44 SGITRASFVAKSIGKYG-FQCGLVAGVFSSTRCGIQRYRK 82 (130)
Q Consensus 44 ~~~~~~~~~~~~~~~~~-~~fa~~g~~fs~~ec~~~~~R~ 82 (130)
.....+.++.+.+-+.+ .||+-+-++|++.-....+.-.
T Consensus 29 ~~~~~f~~Va~~lf~dg~inWGRIval~~F~~~la~~~~~ 68 (100)
T smart00337 29 TAIELFGEVATELFSDGNINWGRVVALLSFGGALAVKLVQ 68 (100)
T ss_pred cHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888 7999999999998888887644
No 36
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=29.53 E-value=1.2e+02 Score=18.80 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhccchhhhh--cC--CchhhhHHHHHHHhccc
Q 032960 22 IGTAGAIWGLCAGPQLARK--RG--LSGITRASFVAKSIGKY 59 (130)
Q Consensus 22 g~~~G~~~G~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~ 59 (130)
+..+|.+.|+|.+-+.... .. +...+.++....++|+.
T Consensus 6 ali~G~~~Gff~ar~~~~k~l~~NPpine~mir~M~~QMG~k 47 (64)
T PF03672_consen 6 ALIVGAVIGFFIARKYMEKQLKENPPINEKMIRAMMMQMGRK 47 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCC
Confidence 4456666777776443222 11 22334566666777654
No 37
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=27.67 E-value=2.5e+02 Score=20.64 Aligned_cols=99 Identities=12% Similarity=0.108 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHhhccchhhhhcCCchhhhHHHHHHHhccchhhhHHHHHHhhhHHHHHHHHHhhhhhHHHHHHHHHH
Q 032960 17 DAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYGFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVT 96 (130)
Q Consensus 17 ~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa~~g~~fs~~ec~~~~~R~k~D~~Ns~~aG~~t 96 (130)
...+.|+..+.+.|+.+++......+.....+ ...-...++.+..-++..++...++..-+|-=-.+-.+-..+.|.+-
T Consensus 23 ~G~~~G~~~g~~~G~rnsp~g~rl~g~l~av~-~rap~~g~~Fav~g~lys~~ec~i~~~R~KeD~~NsiiAG~~TGa~l 101 (170)
T TIGR00980 23 MGTIGGSIFQAFKGFRNSPKGEKLVGAMRAIK-TRAPVLGGNFAVWGGLFSTIDCAVVAIRKKEDPWNSIISGFLTGAAL 101 (170)
T ss_pred HHHHHHHHHHHHHHhhcCCccchhhHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 34444555555556666655433321111000 11112222223333444445555554444433344455555555544
Q ss_pred HHHHhcCcchhHHHHHHHHH
Q 032960 97 GAAIAAGTRRWTQVIGVAGI 116 (130)
Q Consensus 97 Ga~l~~~~g~~~~~~g~a~~ 116 (130)
++==+.+.-....+++++++
T Consensus 102 ~~r~G~~a~~~~aa~gg~~l 121 (170)
T TIGR00980 102 AVRGGPRAMRGSAILGACIL 121 (170)
T ss_pred HhccChHHHHHHHHHHHHHH
Confidence 44444444444444443333
No 38
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.36 E-value=53 Score=24.14 Aligned_cols=100 Identities=16% Similarity=0.066 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhhccchhhhhcCCch------hhhHHHHHHHhccchhhhHHHHHHhhhHHHHHHHHHhhhhhHHHHHHH
Q 032960 20 LRIGTAGAIWGLCAGPQLARKRGLSG------ITRASFVAKSIGKYGFQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAG 93 (130)
Q Consensus 20 ~~g~~~G~~~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~fa~~g~~fs~~ec~~~~~R~k~D~~Ns~~aG 93 (130)
+..+++|...|...+.+-.....++. .+...+++++++++..+-+.-=+.-..+-..+|-+=++--..+=.+=|
T Consensus 47 ~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlvfsg~Ec~iE~~RAK~D~~Ng 126 (168)
T KOG3225|consen 47 VKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLVFSGVECLIESFRAKSDWYNG 126 (168)
T ss_pred HHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhhehhHHHHHHHHHhhhchhcc
Confidence 67788888888888888766654433 244567778999999988887677778888888888888888999999
Q ss_pred HHHHHHHhcCcchhHHHHHHHHHHHHH
Q 032960 94 AVTGAAIAAGTRRWTQVIGVAGIVSAF 120 (130)
Q Consensus 94 ~~tGa~l~~~~g~~~~~~g~a~~~aa~ 120 (130)
..+|-+-+..-+.++.....+.. ++.
T Consensus 127 aiaG~vtGg~l~~raGp~a~~~G-~ag 152 (168)
T KOG3225|consen 127 AIAGCVTGGSLGYRAGPKAAAIG-CAG 152 (168)
T ss_pred eeeeeeeccchhhcccchhhhhc-hhH
Confidence 99998888888878766554444 444
No 39
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=22.51 E-value=2.2e+02 Score=19.56 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=19.9
Q ss_pred hhhhHHHHHHHHHHHHHHhcCcc--hhHHHHHHHHHHHHHHHHHHHhh
Q 032960 83 QNDWVNALIAGAVTGAAIAAGTR--RWTQVIGVAGIVSAFSAAADYSR 128 (130)
Q Consensus 83 k~D~~Ns~~aG~~tGa~l~~~~g--~~~~~~g~a~~~aa~s~a~d~~~ 128 (130)
+|-.+-.+.+|++.|.+--..++ .++.=.+.+.|...-..-.||++
T Consensus 41 R~slL~Gi~~G~~vG~~~fl~~~~~~~A~nwavgsF~l~s~~~we~Cr 88 (118)
T PF12597_consen 41 RDSLLYGIAGGFGVGGLRFLFTSNPRKAANWAVGSFFLGSLGSWEYCR 88 (118)
T ss_pred HHHHHHHHHHHHHHHhhhhcccCCCccchhhhhHHHHHHHHHHHHHHH
Confidence 33344444444444444444443 33433444455333334445544
No 40
>PF13441 Gly-zipper_YMGG: YMGG-like Gly-zipper
Probab=22.51 E-value=90 Score=17.92 Aligned_cols=27 Identities=33% Similarity=0.251 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhcCcc--hhHHHHHHHHH
Q 032960 90 LIAGAVTGAAIAAGTR--RWTQVIGVAGI 116 (130)
Q Consensus 90 ~~aG~~tGa~l~~~~g--~~~~~~g~a~~ 116 (130)
..-|..+|++++.-.+ .+-+++|.++.
T Consensus 7 A~iGA~~GA~iG~~~g~~~~GA~iGA~~G 35 (45)
T PF13441_consen 7 AAIGAAAGAVIGAIIGNGGKGAAIGAAAG 35 (45)
T ss_pred HHHHHHHHHHHHHhhCCCcccchhhhhhh
Confidence 3345555555555444 45555665444
No 41
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=21.57 E-value=1.9e+02 Score=18.55 Aligned_cols=27 Identities=11% Similarity=-0.053 Sum_probs=16.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhc
Q 032960 74 RCGIQRYRKQNDWVNALIAGAVTGAAIAA 102 (130)
Q Consensus 74 ec~~~~~R~k~D~~Ns~~aG~~tGa~l~~ 102 (130)
+++-+.+| +-||-++.-.+..|.++|.
T Consensus 63 ~~~~~~V~--e~P~~svgiAagvG~llG~ 89 (94)
T PF05957_consen 63 EQTEDYVR--ENPWQSVGIAAGVGFLLGL 89 (94)
T ss_pred HHHHHHHH--HChHHHHHHHHHHHHHHHH
Confidence 34444444 5578887777766776664
No 42
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=21.06 E-value=1e+02 Score=23.89 Aligned_cols=26 Identities=23% Similarity=0.196 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhcC-cchhHHHHHHHH
Q 032960 90 LIAGAVTGAAIAAG-TRRWTQVIGVAG 115 (130)
Q Consensus 90 ~~aG~~tGa~l~~~-~g~~~~~~g~a~ 115 (130)
...|+.+|+++|.. .||...++|+++
T Consensus 43 ~~~g~~~ga~~g~~~gg~~G~~~G~~~ 69 (239)
T TIGR03789 43 ALIGLGSGALLGALVGGPVGAIIGGIT 69 (239)
T ss_pred hhhhHHHHHHHhhhhccHHHHHHHHHH
Confidence 33366667777753 346555544433
Done!