Query 032960
Match_columns 130
No_of_seqs 108 out of 625
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 13:00:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032960.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032960hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2imj_A Hypothetical protein DU 55.7 4.8 0.00016 28.3 1.5 17 73-89 16-32 (166)
2 2elu_A Zinc finger protein 406 38.4 11 0.00036 19.6 0.8 18 70-87 19-36 (37)
3 2lck_A Mitochondrial uncouplin 32.4 1.3E+02 0.0045 21.9 6.5 26 15-40 104-129 (303)
4 2lck_A Mitochondrial uncouplin 28.0 1.8E+02 0.006 21.2 6.9 23 18-40 4-26 (303)
5 2jm6_A NOXA; apoptosis, BCL-2, 25.5 45 0.0016 16.1 1.8 14 73-88 6-19 (27)
6 2lbg_A Major prion protein; co 22.3 59 0.002 15.9 1.9 13 90-102 3-15 (27)
7 1ixm_A SPO0B, protein (sporula 13.6 1.2E+02 0.0043 21.2 2.7 25 71-95 16-43 (192)
8 2o35_A Hypothetical protein DU 13.5 88 0.003 20.3 1.7 18 72-89 18-35 (105)
9 3mqp_B Phorbol-12-myristate-13 12.0 1.6E+02 0.0053 13.9 2.0 16 72-88 4-19 (25)
10 3fyb_A Protein of unknown func 11.7 95 0.0033 20.1 1.4 18 72-89 17-34 (104)
No 1
>2imj_A Hypothetical protein DUF1348; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} SCOP: d.17.4.23
Probab=55.66 E-value=4.8 Score=28.31 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhhhHHH
Q 032960 73 TRCGIQRYRKQNDWVNA 89 (130)
Q Consensus 73 ~ec~~~~~R~k~D~~Ns 89 (130)
.|.+++|+|-.+|.||+
T Consensus 16 ~EtA~~KVr~AEDaWNs 32 (166)
T 2imj_A 16 RESAIEKIRLAEDGWNS 32 (166)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 47889999999999997
No 2
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=38.41 E-value=11 Score=19.61 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHhhhhhH
Q 032960 70 FSSTRCGIQRYRKQNDWV 87 (130)
Q Consensus 70 fs~~ec~~~~~R~k~D~~ 87 (130)
|+-+...+.++|+.+|+.
T Consensus 19 ysdvknlikhire~hd~~ 36 (37)
T 2elu_A 19 YSDVKNLIKHIRDAHDPQ 36 (37)
T ss_dssp CSSHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 566778888999998863
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=32.38 E-value=1.3e+02 Score=21.93 Aligned_cols=26 Identities=27% Similarity=0.143 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhhh
Q 032960 15 AVDAILRIGTAGAIWGLCAGPQLARK 40 (130)
Q Consensus 15 t~~~~~~g~~~G~~~G~~~~~~~~~~ 40 (130)
....++.|+..|.+.-++..|.+..+
T Consensus 104 ~~~~~~ag~~ag~~~~~~~~Pld~vk 129 (303)
T 2lck_A 104 IGSRLLAGSTTGALAVAVAQPTDVVK 129 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 34566777777777778888877543
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=28.02 E-value=1.8e+02 Score=21.24 Aligned_cols=23 Identities=35% Similarity=0.281 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhhccchhhhh
Q 032960 18 AILRIGTAGAIWGLCAGPQLARK 40 (130)
Q Consensus 18 ~~~~g~~~G~~~G~~~~~~~~~~ 40 (130)
.++.|+..|.+.-++..|.+..+
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iK 26 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAK 26 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHH
Confidence 35667777777777777777544
No 5
>2jm6_A NOXA; apoptosis, BCL-2, helical bundle, BH3-only; NMR {Mus musculus}
Probab=25.46 E-value=45 Score=16.12 Aligned_cols=14 Identities=36% Similarity=0.672 Sum_probs=10.5
Q ss_pred HHHHHHHHHhhhhhHH
Q 032960 73 TRCGIQRYRKQNDWVN 88 (130)
Q Consensus 73 ~ec~~~~~R~k~D~~N 88 (130)
+||+ ++|.-.|-.|
T Consensus 6 veca--qlr~~gdkln 19 (27)
T 2jm6_A 6 DECA--QLRRIGDKVN 19 (27)
T ss_dssp HHHH--HHHHHHHHHH
T ss_pred HHHH--HHHHHhHHHH
Confidence 5777 7887777776
No 6
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=22.32 E-value=59 Score=15.88 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhc
Q 032960 90 LIAGAVTGAAIAA 102 (130)
Q Consensus 90 ~~aG~~tGa~l~~ 102 (130)
+++.+++|++++.
T Consensus 3 v~ga~AAGaVvGg 15 (27)
T 2lbg_A 3 MAGAAAAGAVVGG 15 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhh
Confidence 4666777777664
No 7
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=13.64 E-value=1.2e+02 Score=21.18 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHh-hhhhHHH--HHHHHH
Q 032960 71 SSTRCGIQRYRK-QNDWVNA--LIAGAV 95 (130)
Q Consensus 71 s~~ec~~~~~R~-k~D~~Ns--~~aG~~ 95 (130)
++++..++.+|. +||+.|- ++.|.+
T Consensus 16 ~~~~~~~~~LR~qrHdf~NkLqvI~GLl 43 (192)
T 1ixm_A 16 ALTNELIHLLGHSRHDWMNKLQLIKGNL 43 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 456777888888 5999995 456653
No 8
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=13.54 E-value=88 Score=20.27 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=14.8
Q ss_pred hHHHHHHHHHhhhhhHHH
Q 032960 72 STRCGIQRYRKQNDWVNA 89 (130)
Q Consensus 72 ~~ec~~~~~R~k~D~~Ns 89 (130)
.+.-+++++|.+.|..|=
T Consensus 18 aFRRLv~HL~~r~DVQNI 35 (105)
T 2o35_A 18 VFRRLLEHLRERSDVQNI 35 (105)
T ss_dssp HHHHHHHHHHHTTTSCHH
T ss_pred HHHHHHHHHHhCcchhHH
Confidence 457789999999999884
No 9
>3mqp_B Phorbol-12-myristate-13-acetate-induced protein 1; BCL-2 family, structural genomics, PSI-2, protein structure initiative; 2.24A {Homo sapiens} PDB: 2nla_B
Probab=11.96 E-value=1.6e+02 Score=13.93 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=9.5
Q ss_pred hHHHHHHHHHhhhhhHH
Q 032960 72 STRCGIQRYRKQNDWVN 88 (130)
Q Consensus 72 ~~ec~~~~~R~k~D~~N 88 (130)
-+||+.+ +|.-.|-.|
T Consensus 4 eveca~q-lrr~gdkln 19 (25)
T 3mqp_B 4 EVECATQ-LRRFGDKLN 19 (26)
T ss_dssp HHHHHHH-HHHHHHHHH
T ss_pred hhHHHHH-HHHHhHHHH
Confidence 3677765 454556655
No 10
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=11.74 E-value=95 Score=20.07 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=14.8
Q ss_pred hHHHHHHHHHhhhhhHHH
Q 032960 72 STRCGIQRYRKQNDWVNA 89 (130)
Q Consensus 72 ~~ec~~~~~R~k~D~~Ns 89 (130)
.+.-+++++|.+.|..|=
T Consensus 17 aFRrL~~HL~~r~DVQNI 34 (104)
T 3fyb_A 17 AFRHLLRHLDEHKDVQNI 34 (104)
T ss_dssp HHHHHHHHHHTCTTSCHH
T ss_pred HHHHHHHHHHhCcchhHH
Confidence 457789999999999884
Done!