BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032961
(130 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255560876|ref|XP_002521451.1| polypeptide deformylase, putative [Ricinus communis]
gi|223539350|gb|EEF40941.1| polypeptide deformylase, putative [Ricinus communis]
Length = 282
Score = 239 bits (609), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 111/129 (86%), Positives = 124/129 (96%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVL+NPR+NKYS K++P+ EGC
Sbjct: 121 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLINPRLNKYSKKIVPFNEGC 180
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPGI+ADV RPESVKIDARDINGARF+V+LS LPARVFQHE+DHL+GILFF+RMTD+V
Sbjct: 181 LSFPGIYADVLRPESVKIDARDINGARFTVNLSGLPARVFQHEYDHLEGILFFDRMTDEV 240
Query: 121 LDSIREQLE 129
LDSIR QL+
Sbjct: 241 LDSIRAQLQ 249
>gi|225452422|ref|XP_002276964.1| PREDICTED: peptide deformylase 1B, chloroplastic [Vitis vinifera]
gi|296087647|emb|CBI34903.3| unnamed protein product [Vitis vinifera]
Length = 275
Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/129 (84%), Positives = 119/129 (92%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYS K++ + EGC
Sbjct: 114 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSKKIVLFNEGC 173
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPGI+ADVERPESVKIDARDI GARF ++LS LPARVFQHEFDHLQG LFF+RMT++V
Sbjct: 174 LSFPGIYADVERPESVKIDARDITGARFMINLSGLPARVFQHEFDHLQGTLFFDRMTEEV 233
Query: 121 LDSIREQLE 129
LDSI L+
Sbjct: 234 LDSIHANLQ 242
>gi|350535262|ref|NP_001234441.1| peptide deformylase 1B, chloroplastic [Solanum lycopersicum]
gi|17433052|sp|Q9FV54.1|DEF1B_SOLLC RecName: Full=Peptide deformylase 1B, chloroplastic; Short=PDF 1B;
AltName: Full=Polypeptide deformylase; Flags: Precursor
gi|11320950|gb|AAG33972.1| peptide deformylase-like protein [Solanum lycopersicum]
Length = 279
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 104/128 (81%), Positives = 120/128 (93%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD+MYKTDGIGLSAPQVG+NVQLMVFN GERGEGEEIVLVNPRV++YS ++IPYEEGC
Sbjct: 118 MFDIMYKTDGIGLSAPQVGMNVQLMVFNAAGERGEGEEIVLVNPRVSRYSRRIIPYEEGC 177
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFP IH DV+RPESVK+DA+DING RF +SLS LPARVFQHEFDHLQG+LFF++MTD+V
Sbjct: 178 LSFPMIHGDVKRPESVKVDAQDINGTRFEISLSALPARVFQHEFDHLQGVLFFDKMTDEV 237
Query: 121 LDSIREQL 128
LD+IRE+L
Sbjct: 238 LDTIREKL 245
>gi|11320966|gb|AAG33980.1|AF269165_1 peptide deformylase [Arabidopsis thaliana]
Length = 273
Score = 228 bits (580), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 102/129 (79%), Positives = 121/129 (93%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP GE GEG+EIVLVNP++ KYS+K++P++EGC
Sbjct: 112 MFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGC 171
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPGI+A+V RP+SVKIDARDI G RFS+SLS LPAR+FQHE+DHL+G+LFF+RMTD V
Sbjct: 172 LSFPGIYAEVVRPQSVKIDARDITGERFSISLSSLPARIFQHEYDHLEGVLFFDRMTDQV 231
Query: 121 LDSIREQLE 129
LDSIRE+LE
Sbjct: 232 LDSIREELE 240
>gi|15241461|ref|NP_196970.1| peptide deformylase 1B [Arabidopsis thaliana]
gi|30684999|ref|NP_850821.1| peptide deformylase 1B [Arabidopsis thaliana]
gi|39932734|sp|Q9FUZ2.2|DEF1B_ARATH RecName: Full=Peptide deformylase 1B, chloroplastic; Short=AtDEF2;
Short=AtPDF1B; Short=PDF 1B; AltName: Full=Polypeptide
deformylase; Flags: Precursor
gi|7573315|emb|CAB87633.1| putative protein [Arabidopsis thaliana]
gi|15292891|gb|AAK92816.1| unknown protein [Arabidopsis thaliana]
gi|20465677|gb|AAM20307.1| unknown protein [Arabidopsis thaliana]
gi|332004676|gb|AED92059.1| peptide deformylase 1B [Arabidopsis thaliana]
gi|332004677|gb|AED92060.1| peptide deformylase 1B [Arabidopsis thaliana]
Length = 273
Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 102/129 (79%), Positives = 121/129 (93%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP GE GEG+EIVLVNP++ KYS+K++P++EGC
Sbjct: 112 MFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGC 171
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPGI+A+V RP+SVKIDARDI G RFS+SLS LPAR+FQHE+DHL+G+LFF+RMTD V
Sbjct: 172 LSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQV 231
Query: 121 LDSIREQLE 129
LDSIRE+LE
Sbjct: 232 LDSIREELE 240
>gi|21553551|gb|AAM62644.1| Formylmethionine deformylase [Arabidopsis thaliana]
Length = 273
Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 102/129 (79%), Positives = 121/129 (93%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP GE GEG+EIVLVNP++ KYS+K++P++EGC
Sbjct: 112 MFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGC 171
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPGI+A+V RP+SVKIDARDI G RFS+SLS LPAR+FQHE+DHL+G+LFF+RMTD V
Sbjct: 172 LSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQV 231
Query: 121 LDSIREQLE 129
LDSIRE+LE
Sbjct: 232 LDSIREELE 240
>gi|224060121|ref|XP_002300047.1| peptide deformylase [Populus trichocarpa]
gi|222847305|gb|EEE84852.1| peptide deformylase [Populus trichocarpa]
Length = 258
Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/129 (83%), Positives = 119/129 (92%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVGINVQLMVFNP E GEG+EIVLVNPRVNKYS K + + EGC
Sbjct: 98 MFDVMYKTDGIGLSAPQVGINVQLMVFNPADEHGEGDEIVLVNPRVNKYSKKTVLFNEGC 157
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPGI+ADV+RPESVKIDARDINGARF+V+LS LPARVFQHEFDHLQGILFF+RMT++V
Sbjct: 158 LSFPGIYADVKRPESVKIDARDINGARFTVNLSGLPARVFQHEFDHLQGILFFDRMTEEV 217
Query: 121 LDSIREQLE 129
LDSIR L+
Sbjct: 218 LDSIRPGLQ 226
>gi|194368702|pdb|3CPM|A Chain A, Plant Peptide Deformylase Pdf1b Crystal Structure
Length = 193
Score = 225 bits (573), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 102/129 (79%), Positives = 121/129 (93%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP GE GEG+EIVLVNP++ KYS+K++P++EGC
Sbjct: 48 MFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPGI+A+V RP+SVKIDARDI G RFS+SLS LPAR+FQHE+DHL+G+LFF+RMTD V
Sbjct: 108 LSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQV 167
Query: 121 LDSIREQLE 129
LDSIRE+LE
Sbjct: 168 LDSIREELE 176
>gi|297811599|ref|XP_002873683.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319520|gb|EFH49942.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 273
Score = 225 bits (573), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 103/129 (79%), Positives = 120/129 (93%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP GE GEGEEIVLVNP + KYS+K++P++EGC
Sbjct: 112 MFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGEEIVLVNPIIKKYSDKLVPFDEGC 171
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPGI+A+V RP+SVKIDARDI G RFS+SLS LPAR+FQHE+DHL+G+LFF+RMTD V
Sbjct: 172 LSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQV 231
Query: 121 LDSIREQLE 129
LDSIRE+LE
Sbjct: 232 LDSIREELE 240
>gi|327200558|pdb|3M6O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b)
gi|327200559|pdb|3M6O|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b)
gi|327200560|pdb|3M6P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) In Complex With Actinonin
gi|327200561|pdb|3M6P|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) In Complex With Actinonin
gi|335892336|pdb|3O3J|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) In Complex With Inhibitor 6b
gi|335892375|pdb|3PN2|A Chain A, Crystal Structure Of Arabidopsis Thaliana Petide
Deformylase 1b (Atpdf1b) (Crystallized In Peg-550-Mme)
gi|335892376|pdb|3PN3|A Chain A, Crystal Structure Of Arabidopsis Thaliana Petide
Deformylase 1b (Atpdf1b) In Complex With Inhibitor 21
gi|335892377|pdb|3PN3|B Chain B, Crystal Structure Of Arabidopsis Thaliana Petide
Deformylase 1b (Atpdf1b) In Complex With Inhibitor 21
gi|335892378|pdb|3PN4|A Chain A, Crystal Structure Of Arabidopsis Thaliana Petide
Deformylase 1b (Atpdf1b) In Complex With Actinonin
(Crystallized In Peg-550-Mme)
Length = 193
Score = 224 bits (571), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 102/129 (79%), Positives = 121/129 (93%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP GE GEG+EIVLVNP++ KYS+K++P++EGC
Sbjct: 32 MFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPGI+A+V RP+SVKIDARDI G RFS+SLS LPAR+FQHE+DHL+G+LFF+RMTD V
Sbjct: 92 LSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQV 151
Query: 121 LDSIREQLE 129
LDSIRE+LE
Sbjct: 152 LDSIREELE 160
>gi|327200562|pdb|3M6Q|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) G41q Mutant In Complex With
Actinonin
gi|335892379|pdb|3PN5|A Chain A, Crystal Structure Of Arabidopsis Thaliana Petide
Deformylase 1b (Atpdf1b) G41q Mutant
Length = 193
Score = 221 bits (564), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 101/129 (78%), Positives = 120/129 (93%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTD IGLSAPQVG+NVQLMVFNP GE GEG+EIVLVNP++ KYS+K++P++EGC
Sbjct: 32 MFDVMYKTDQIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPGI+A+V RP+SVKIDARDI G RFS+SLS LPAR+FQHE+DHL+G+LFF+RMTD V
Sbjct: 92 LSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQV 151
Query: 121 LDSIREQLE 129
LDSIRE+LE
Sbjct: 152 LDSIREELE 160
>gi|327200563|pdb|3M6R|A Chain A, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) G41m Mutant In Complex With
Actinonin
gi|327200564|pdb|3M6R|B Chain B, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) G41m Mutant In Complex With
Actinonin
gi|327200565|pdb|3M6R|C Chain C, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) G41m Mutant In Complex With
Actinonin
gi|327200566|pdb|3M6R|D Chain D, Crystal Structure Of Arabidopsis Thaliana Peptide
Deformylase 1b (Atpdf1b) G41m Mutant In Complex With
Actinonin
gi|335892380|pdb|3PN6|A Chain A, Crystal Structure Of Arabidopsis Thaliana Petide
Deformylase 1b (Atpdf1b) G41m Mutant
gi|335892381|pdb|3PN6|B Chain B, Crystal Structure Of Arabidopsis Thaliana Petide
Deformylase 1b (Atpdf1b) G41m Mutant
Length = 193
Score = 221 bits (563), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 101/129 (78%), Positives = 120/129 (93%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTD IGLSAPQVG+NVQLMVFNP GE GEG+EIVLVNP++ KYS+K++P++EGC
Sbjct: 32 MFDVMYKTDMIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPGI+A+V RP+SVKIDARDI G RFS+SLS LPAR+FQHE+DHL+G+LFF+RMTD V
Sbjct: 92 LSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQV 151
Query: 121 LDSIREQLE 129
LDSIRE+LE
Sbjct: 152 LDSIREELE 160
>gi|449489461|ref|XP_004158319.1| PREDICTED: peptide deformylase 1B, chloroplastic-like [Cucumis
sativus]
Length = 273
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 102/129 (79%), Positives = 116/129 (89%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFN VGERGEGEEIVLVNP+V +YS K + + EGC
Sbjct: 113 MFDVMYKTDGIGLSAPQVGVNVQLMVFNSVGERGEGEEIVLVNPKVYRYSKKTVLFNEGC 172
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFP I+ADVERPES+KIDARDI+G RF V+LS L ARVFQHEFDHLQG LFF+RMTD+V
Sbjct: 173 LSFPMIYADVERPESIKIDARDISGTRFMVNLSGLSARVFQHEFDHLQGTLFFDRMTDEV 232
Query: 121 LDSIREQLE 129
L++IR QL+
Sbjct: 233 LETIRPQLQ 241
>gi|218188726|gb|EEC71153.1| hypothetical protein OsI_02992 [Oryza sativa Indica Group]
Length = 997
Score = 205 bits (521), Expect = 6e-51, Method: Composition-based stats.
Identities = 95/129 (73%), Positives = 112/129 (86%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP G +GEGEEIVLVNP V K S +++ YEE C
Sbjct: 826 MFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRLLVYEESC 885
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPGI+A+V RP++VKIDA+D+ GA+ V LS L ARVFQHEFDHLQGILFF+RM+ DV
Sbjct: 886 LSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQGILFFDRMSLDV 945
Query: 121 LDSIREQLE 129
L+S+RE L+
Sbjct: 946 LESVREGLK 954
>gi|326511653|dbj|BAJ91971.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 204 bits (520), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 97/129 (75%), Positives = 114/129 (88%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP G +GEGEEIVLVNP V K+S ++ YEEGC
Sbjct: 110 MFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKFSKRLSVYEEGC 169
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPGI+A+V RP++VKIDA+D +GA+ V LS+L ARVFQHEFDHLQGILFF+RMT DV
Sbjct: 170 LSFPGIYANVLRPDTVKIDAQDASGAKIKVKLSELSARVFQHEFDHLQGILFFDRMTMDV 229
Query: 121 LDSIREQLE 129
++SI EQL+
Sbjct: 230 VESIHEQLK 238
>gi|357135653|ref|XP_003569423.1| PREDICTED: peptide deformylase 1B, chloroplastic-like [Brachypodium
distachyon]
Length = 269
Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/129 (73%), Positives = 112/129 (86%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP G GEGEEI+LVNP V K+S +++ YEEGC
Sbjct: 109 MFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVEGEGEEIILVNPVVYKFSKRLLVYEEGC 168
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPGIH +V RP++VKI A+D+ GA+ V LS L ARVFQHEFDHLQG+LFF+RMT DV
Sbjct: 169 LSFPGIHGNVLRPDTVKIAAQDVTGAKIKVRLSALAARVFQHEFDHLQGVLFFDRMTVDV 228
Query: 121 LDSIREQLE 129
+DSIRE+L+
Sbjct: 229 VDSIREELK 237
>gi|222618926|gb|EEE55058.1| hypothetical protein OsJ_02762 [Oryza sativa Japonica Group]
Length = 267
Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/129 (74%), Positives = 113/129 (87%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP G +GEGEEIVLVNP V K S +++ YEEGC
Sbjct: 109 MFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRLLVYEEGC 168
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPGI+A+V RP++VKIDA+D+ GA+ V LS L ARVFQHEFDHLQGILFF+RM+ DV
Sbjct: 169 LSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQGILFFDRMSLDV 228
Query: 121 LDSIREQLE 129
L+S+RE L+
Sbjct: 229 LESVREGLK 237
>gi|242058133|ref|XP_002458212.1| hypothetical protein SORBIDRAFT_03g029040 [Sorghum bicolor]
gi|241930187|gb|EES03332.1| hypothetical protein SORBIDRAFT_03g029040 [Sorghum bicolor]
Length = 264
Score = 202 bits (515), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 94/129 (72%), Positives = 113/129 (87%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP G +GEGEEIVLVNP V K + +++ +EEGC
Sbjct: 104 MFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKSAKRLLVFEEGC 163
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPGI+ +V RPESVKI+A+D+ GA+ V LS LPARVFQHEFDHL GILFF+RMT DV
Sbjct: 164 LSFPGIYGNVLRPESVKIEAQDVTGAKIKVKLSGLPARVFQHEFDHLLGILFFDRMTMDV 223
Query: 121 LDSIREQLE 129
L+++RE+L+
Sbjct: 224 LETVREELK 232
>gi|115438779|ref|NP_001043669.1| Os01g0637600 [Oryza sativa Japonica Group]
gi|75251983|sp|Q5VNN5.1|DEF1B_ORYSJ RecName: Full=Peptide deformylase 1B, chloroplastic; Short=OsPDF1B;
Short=PDF 1B; Flags: Precursor
gi|55297005|dbj|BAD68576.1| putative polygalacturonase [Oryza sativa Japonica Group]
gi|55297594|dbj|BAD68940.1| putative polygalacturonase [Oryza sativa Japonica Group]
gi|113533200|dbj|BAF05583.1| Os01g0637600 [Oryza sativa Japonica Group]
gi|164633054|gb|ABY64740.1| peptide deformylase 1B1 [Oryza sativa Japonica Group]
gi|215741408|dbj|BAG97903.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 202 bits (515), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 96/129 (74%), Positives = 113/129 (87%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP G +GEGEEIVLVNP V K S +++ YEEGC
Sbjct: 109 MFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRLLVYEEGC 168
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPGI+A+V RP++VKIDA+D+ GA+ V LS L ARVFQHEFDHLQGILFF+RM+ DV
Sbjct: 169 LSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQGILFFDRMSLDV 228
Query: 121 LDSIREQLE 129
L+S+RE L+
Sbjct: 229 LESVREGLK 237
>gi|222618921|gb|EEE55053.1| hypothetical protein OsJ_02752 [Oryza sativa Japonica Group]
Length = 260
Score = 201 bits (512), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 95/129 (73%), Positives = 112/129 (86%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP G +GEGEEIVLVNP V K S +++ YEE C
Sbjct: 89 MFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRLLVYEESC 148
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPGI+A+V RP++VKIDA+D+ GA+ V LS L ARVFQHEFDHLQGILFF+RM+ DV
Sbjct: 149 LSFPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQGILFFDRMSLDV 208
Query: 121 LDSIREQLE 129
L+S+RE L+
Sbjct: 209 LESVREGLK 217
>gi|413950732|gb|AFW83381.1| hypothetical protein ZEAMMB73_684024 [Zea mays]
gi|413950733|gb|AFW83382.1| hypothetical protein ZEAMMB73_684024 [Zea mays]
Length = 264
Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 91/129 (70%), Positives = 112/129 (86%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP G +GEGEEIVLVNP + K + +++ +EEGC
Sbjct: 104 MFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVIYKSAKRLLVFEEGC 163
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPGI+ +V RPESVKI+A+D+ GA+ V LS + ARVFQHEFDHL GILFF+RMT DV
Sbjct: 164 LSFPGIYGNVVRPESVKIEAQDVTGAKIKVKLSGIHARVFQHEFDHLLGILFFDRMTIDV 223
Query: 121 LDSIREQLE 129
L+++RE+L+
Sbjct: 224 LETVREELK 232
>gi|351725295|ref|NP_001237855.1| uncharacterized protein LOC100500424 [Glycine max]
gi|255630300|gb|ACU15506.1| unknown [Glycine max]
Length = 221
Score = 192 bits (488), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 91/108 (84%), Positives = 100/108 (92%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQ+GINVQLMVFNPVGE GEGEEIVLVNPRV++YS K+ + EGC
Sbjct: 106 MFDVMYKTDGIGLSAPQLGINVQLMVFNPVGEHGEGEEIVLVNPRVSQYSKKLTLFNEGC 165
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
LSFPGI+ADV+RPESVKIDAR ING FSV+LSDLPAR+FQHEFDHLQ
Sbjct: 166 LSFPGINADVKRPESVKIDARGINGTMFSVNLSDLPARIFQHEFDHLQ 213
>gi|55297586|dbj|BAD68932.1| peptide deformylase-like [Oryza sativa Japonica Group]
Length = 326
Score = 189 bits (479), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 89/124 (71%), Positives = 107/124 (86%)
Query: 6 YKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPG 65
Y+TDGIGLSAPQVG+NVQLMVFNP G +GEGEEIVLVNP V K S +++ YEE CLSFPG
Sbjct: 171 YRTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRLLVYEESCLSFPG 230
Query: 66 IHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIR 125
I+A+V RP++VKIDA+D+ GA+ V LS L ARVFQHEFDHLQGILFF+RM+ DVL+S+R
Sbjct: 231 IYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQGILFFDRMSLDVLESVR 290
Query: 126 EQLE 129
E L+
Sbjct: 291 EGLK 294
>gi|116787193|gb|ABK24406.1| unknown [Picea sitchensis]
Length = 290
Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/129 (65%), Positives = 106/129 (82%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD+MYKTDG+GLSAPQVG+NVQLMVFNP GE G+GEE++LVNP + KYS + + EGC
Sbjct: 140 MFDLMYKTDGVGLSAPQVGVNVQLMVFNPAGESGKGEEVILVNPEIYKYSKRKEVFTEGC 199
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFP I+ADVERP SVKI+A D+ G +F +SL + AR+FQHE+DHLQ ILFFERM D+
Sbjct: 200 LSFPEIYADVERPMSVKIEAWDVKGKKFILSLKEFNARIFQHEYDHLQRILFFERMHPDI 259
Query: 121 LDSIREQLE 129
L++IR L+
Sbjct: 260 LETIRPALQ 268
>gi|168055848|ref|XP_001779935.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668649|gb|EDQ55252.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 202
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/139 (61%), Positives = 109/139 (78%), Gaps = 10/139 (7%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M DVMYKTDG+GL+APQVG+NV+LMV+NP GERG G+E VLVNPR+ KY ++EGC
Sbjct: 42 MLDVMYKTDGVGLAAPQVGVNVRLMVYNPSGERGSGKEYVLVNPRIVKYGKSRDLFDEGC 101
Query: 61 LSFP----------GIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGI 110
LSFP I A+VERP+SV+IDA+DI G +FS++L D AR+FQHE+DHL+GI
Sbjct: 102 LSFPVLERGPNQSLTIEAEVERPKSVRIDAQDIKGKKFSINLKDFQARIFQHEYDHLEGI 161
Query: 111 LFFERMTDDVLDSIREQLE 129
L+F+RMT +VLD+IR +LE
Sbjct: 162 LYFDRMTPEVLDTIRPELE 180
>gi|303271927|ref|XP_003055325.1| peptide deformylase [Micromonas pusilla CCMP1545]
gi|226463299|gb|EEH60577.1| peptide deformylase [Micromonas pusilla CCMP1545]
Length = 210
Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 102/129 (79%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY++DG+GL+APQVG+N +LMV+N GERG+G E+V+VNP++ K+S + +EEGC
Sbjct: 68 MFAKMYESDGVGLAAPQVGVNYRLMVYNEAGERGKGAEVVMVNPKIVKFSKEKDMFEEGC 127
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFP I+ADVERP +V I+A+++NG +F ++L ARVFQHE+DHL G+LF +RM DV
Sbjct: 128 LSFPAIYADVERPTAVTIEAQNVNGKKFKMTLDGFQARVFQHEYDHLDGVLFHDRMAADV 187
Query: 121 LDSIREQLE 129
+ +R +L+
Sbjct: 188 VAKVRAELD 196
>gi|307109178|gb|EFN57416.1| hypothetical protein CHLNCDRAFT_17300, partial [Chlorella
variabilis]
Length = 169
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/128 (57%), Positives = 100/128 (78%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+VMY+ DG+GL+APQVG+NV+LMVFN GE+G G+EIVLVNP++ +EEGC
Sbjct: 42 MFEVMYEDDGVGLAAPQVGVNVRLMVFNEAGEKGAGDEIVLVNPQIINQGKARNMFEEGC 101
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFP I+ADVERP VK+ A+D++G +F+VSL PAR+FQHE+DHL G LF +RM +V
Sbjct: 102 LSFPNIYADVERPSKVKVKAQDLSGKKFTVSLIGFPARIFQHEYDHLDGRLFHDRMAPEV 161
Query: 121 LDSIREQL 128
+ +R+Q+
Sbjct: 162 VAGVRQQV 169
>gi|255070681|ref|XP_002507422.1| peptide deformylase, chloroplast precursor [Micromonas sp. RCC299]
gi|226522697|gb|ACO68680.1| peptide deformylase, chloroplast precursor [Micromonas sp. RCC299]
Length = 257
Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 102/129 (79%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF +MY T+G+GL+APQVG+N ++MV+N GE G G+E+VLVNP++ K+S +EEGC
Sbjct: 115 MFKIMYDTEGVGLAAPQVGVNYRMMVYNEAGEPGRGKEVVLVNPKIVKFSKTKDLFEEGC 174
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFP I+ADVERP SV+++A+++ G +F ++L ARVFQHE+DHL G+LF +RMTD+V
Sbjct: 175 LSFPKIYADVERPTSVQVEAQNLRGKKFKMTLDGFEARVFQHEYDHLDGVLFHDRMTDEV 234
Query: 121 LDSIREQLE 129
+++ +L+
Sbjct: 235 RGTVQGELD 243
>gi|424513394|emb|CCO66016.1| peptide deformylase [Bathycoccus prasinos]
Length = 311
Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 99/129 (76%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF +MY+T G GL+APQVG+N +LMV+N G GEG+E+VLVNP+++K+S + +EEGC
Sbjct: 170 MFKIMYETVGCGLAAPQVGVNYRLMVYNEAGAPGEGKEVVLVNPKISKFSKQKDFFEEGC 229
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFP I+A+VERP VKI+A+D+ G +F ++L ARVFQHE+DHL G+LF +RM+ V
Sbjct: 230 LSFPKIYAEVERPMGVKIEAQDVEGNKFKMTLEGFEARVFQHEYDHLDGVLFHDRMSSSV 289
Query: 121 LDSIREQLE 129
+ IR L+
Sbjct: 290 VGDIRSDLD 298
>gi|302792493|ref|XP_002978012.1| hypothetical protein SELMODRAFT_108250 [Selaginella moellendorffii]
gi|300154033|gb|EFJ20669.1| hypothetical protein SELMODRAFT_108250 [Selaginella moellendorffii]
Length = 198
Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 93/124 (75%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M DVMY+TDG+GLSAPQVG+N +LMVFNP GERG+G+E V VNP + K+ + EGC
Sbjct: 42 MLDVMYRTDGVGLSAPQVGVNARLMVFNPEGERGKGKEYVFVNPMIVKFGKEREADREGC 101
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSF ADVERP S++++A+DING +F + AR+FQHE+DHL+G+L+ +RMT
Sbjct: 102 LSFYSAQADVERPISIRVEAQDINGKKFGTTFRGWTARIFQHEYDHLEGVLYIDRMTPKA 161
Query: 121 LDSI 124
L+SI
Sbjct: 162 LNSI 165
>gi|302766631|ref|XP_002966736.1| hypothetical protein SELMODRAFT_85358 [Selaginella moellendorffii]
gi|300166156|gb|EFJ32763.1| hypothetical protein SELMODRAFT_85358 [Selaginella moellendorffii]
Length = 198
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 93/124 (75%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M DVMY+TDG+GLSAPQVG+N +LMVFNP GERG+G+E V VNP + K+ + EGC
Sbjct: 42 MLDVMYRTDGVGLSAPQVGVNARLMVFNPEGERGKGKEYVFVNPMIVKFGKEREADREGC 101
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSF ADVERP S++++A+DING +F + AR+FQHE+DHL+G+L+ +RMT
Sbjct: 102 LSFYSAQADVERPISIRVEAQDINGKKFGTTFRGWTARIFQHEYDHLEGVLYIDRMTPKA 161
Query: 121 LDSI 124
L+SI
Sbjct: 162 LNSI 165
>gi|145345192|ref|XP_001417104.1| Peptide deformylase, organellar [Ostreococcus lucimarinus CCE9901]
gi|144577330|gb|ABO95397.1| Peptide deformylase, organellar [Ostreococcus lucimarinus CCE9901]
Length = 240
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 97/129 (75%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF +MY+T G GL+APQVG+N ++MV+N GE G+G E+VL NP + K+S + +EEGC
Sbjct: 97 MFKIMYETVGCGLAAPQVGVNYRMMVYNEAGEPGQGREVVLCNPEIVKFSKEKDLFEEGC 156
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFP ++ADVERP V+I+A+++ G +F ++L ARVFQHE+DHL G+L+ +RM+ +V
Sbjct: 157 LSFPKMYADVERPIGVQIEAQNLKGKKFKMTLEGFEARVFQHEYDHLDGVLYHDRMSPEV 216
Query: 121 LDSIREQLE 129
S++ L+
Sbjct: 217 RASVQSTLD 225
>gi|384246587|gb|EIE20076.1| peptide deformylase [Coccomyxa subellipsoidea C-169]
Length = 186
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 91/129 (70%), Gaps = 2/129 (1%)
Query: 1 MFDVMYK-TDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
M +VMY DG+GL+APQVG+NV++MV+NP G RG+ EE +LVNPR+ S K +EEG
Sbjct: 40 MLEVMYNGDDGVGLAAPQVGVNVRMMVYNPTGRRGD-EEFILVNPRILSTSGKREVHEEG 98
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLSFP + A+VERP VK+ A+D+ G ++L+ AR+F HE+DHLQG LF +RM +
Sbjct: 99 CLSFPRLFANVERPHKVKVRAQDVKGDTLMLTLNGWQARIFLHEYDHLQGTLFHDRMKPE 158
Query: 120 VLDSIREQL 128
L I + L
Sbjct: 159 ELRKIHKGL 167
>gi|159463814|ref|XP_001690137.1| peptide deformylase [Chlamydomonas reinhardtii]
gi|158284125|gb|EDP09875.1| peptide deformylase [Chlamydomonas reinhardtii]
Length = 248
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 89/129 (68%), Gaps = 1/129 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++MY+ DG+GL+APQVG+NV+LMVFNP+G G E +LVNP + + EEGC
Sbjct: 87 MIEIMYQDDGVGLAAPQVGVNVRLMVFNPMGRDKPGNESILVNPEIVEQLGGKELGEEGC 146
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSD-LPARVFQHEFDHLQGILFFERMTDD 119
LSFP I+ DVER + + A D G ++L+D AR+FQHEFDHLQG+LF +RM
Sbjct: 147 LSFPRIYGDVERSRQINVKALDATGQPVKLTLTDPWVARIFQHEFDHLQGVLFHDRMKPS 206
Query: 120 VLDSIREQL 128
VL+++R +L
Sbjct: 207 VLETVRPEL 215
>gi|302844969|ref|XP_002954024.1| hypothetical protein VOLCADRAFT_45493 [Volvox carteri f.
nagariensis]
gi|300260836|gb|EFJ45053.1| hypothetical protein VOLCADRAFT_45493 [Volvox carteri f.
nagariensis]
Length = 177
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 87/129 (67%), Gaps = 1/129 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M +VMY+ DG+GL+APQVG+N++LMVFNP G G E +LVNP + + EEGC
Sbjct: 42 MIEVMYQDDGVGLAAPQVGVNIRLMVFNPAGRDRPGNESILVNPEIVEQLGGKELGEEGC 101
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSD-LPARVFQHEFDHLQGILFFERMTDD 119
LSFP I+ DVER + + A D NG + L+D AR+FQHE+DHLQG+LF +RM
Sbjct: 102 LSFPRIYGDVERSRQITVKALDANGQPVRLQLTDPWVARIFQHEYDHLQGVLFHDRMKPS 161
Query: 120 VLDSIREQL 128
VL+++R L
Sbjct: 162 VLEAVRPAL 170
>gi|32307482|gb|AAP79146.1| peptide deformylase [Bigelowiella natans]
Length = 315
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 82/129 (63%), Gaps = 1/129 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGE-EIVLVNPRVNKYSNKMIPYEEG 59
MFDVMY DG GL+APQVGIN +LMVFNP G+R + + E+VL NP + + + EG
Sbjct: 153 MFDVMYDDDGCGLAAPQVGINYRLMVFNPQGDRRKKDTEMVLANPEIISSGEEKDWFREG 212
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLSFPGI VERP V I A+D+ G L ARVFQHE+DHL G LF +RM D
Sbjct: 213 CLSFPGIRGQVERPTKVLIRAQDVKGEDIEFELEGFTARVFQHEYDHLSGTLFHDRMPDK 272
Query: 120 VLDSIREQL 128
+ I +L
Sbjct: 273 EVAEIHAKL 281
>gi|449015929|dbj|BAM79331.1| polypeptide deformylase [Cyanidioschyzon merolae strain 10D]
Length = 264
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/130 (50%), Positives = 84/130 (64%), Gaps = 1/130 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEG 59
MF VMY + G+GL+APQVGIN ++MVFNP G+ R E+ LVNPR+ + S EG
Sbjct: 122 MFKVMYASRGVGLAAPQVGINKRVMVFNPKGDPRAWLSEVALVNPRIIERSEATEEGMEG 181
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLSFPG+ D+ER +K++A NG RF V AR+FQHE+DHL G+LF +RM
Sbjct: 182 CLSFPGVSGDIERSLMIKVEAMKPNGKRFQVKYQGWTARIFQHEYDHLDGVLFIDRMKPA 241
Query: 120 VLDSIREQLE 129
V + R LE
Sbjct: 242 VREQNRGALE 251
>gi|159463808|ref|XP_001690134.1| predicted protein [Chlamydomonas reinhardtii]
gi|158284122|gb|EDP09872.1| predicted protein [Chlamydomonas reinhardtii]
Length = 250
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 83/121 (68%), Gaps = 1/121 (0%)
Query: 9 DGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHA 68
DG+GL+APQVG+NV+LMVFNP+G G E +LVNP + + EEGCLSFP I+
Sbjct: 97 DGVGLAAPQVGVNVRLMVFNPMGRDKPGNESILVNPEIVEQLGGKELGEEGCLSFPRIYG 156
Query: 69 DVERPESVKIDARDINGARFSVSLSD-LPARVFQHEFDHLQGILFFERMTDDVLDSIREQ 127
DVER + + A D G ++L+D AR+FQHEFDHLQG+LF +RM VL+++R +
Sbjct: 157 DVERSRQINVKALDATGQPVKLTLTDPWVARIFQHEFDHLQGVLFHDRMKPSVLETVRPE 216
Query: 128 L 128
L
Sbjct: 217 L 217
>gi|443327819|ref|ZP_21056427.1| peptide deformylase [Xenococcus sp. PCC 7305]
gi|442792548|gb|ELS02027.1| peptide deformylase [Xenococcus sp. PCC 7305]
Length = 187
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 87/129 (67%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG+N QL+V + ++ + +VL+NP++ + S ++ EEGC
Sbjct: 48 MLQTMYSQDGIGLAAPQVGVNKQLIVVDCELDKPDSPPLVLINPKITRSSKQICSAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RPE++++ +D NG + DL ARV QHE DHL G++F +R+ +++
Sbjct: 108 LSIPGVYLDVTRPEAIEVSFKDENGKPRKIQAKDLLARVIQHEMDHLNGVMFVDRVENEI 167
Query: 121 LDSIREQLE 129
++ E+L+
Sbjct: 168 --ALNEELK 174
>gi|284929247|ref|YP_003421769.1| peptide deformylase [cyanobacterium UCYN-A]
gi|284809691|gb|ADB95388.1| peptide deformylase [cyanobacterium UCYN-A]
Length = 183
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 82/120 (68%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY ++GIGL++ QVGI+ QL+V + E ++L+NP++N YS ++ EEGC
Sbjct: 44 MLQTMYSSNGIGLASTQVGIHKQLIVIDCEPELSTNAPLILINPKINYYSQELCVMEEGC 103
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RPE +++ ++ NG +S +DL ARV QHE DHL G++F +R+T+D+
Sbjct: 104 LSIPGVYFDVIRPEMIQVSFKNENGRPCQISATDLLARVIQHEIDHLNGVMFVDRVTNDL 163
>gi|254424040|ref|ZP_05037758.1| peptide deformylase [Synechococcus sp. PCC 7335]
gi|196191529|gb|EDX86493.1| peptide deformylase [Synechococcus sp. PCC 7335]
Length = 187
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 79/120 (65%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG+N QL+V + E +VLVNP++ +YS+++ +EGC
Sbjct: 48 MLQTMYSEDGIGLAAPQVGVNKQLLVIDADPENEAASALVLVNPKIIRYSDELAAGQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RP ++++ +D NG + DL ARV QHE DHL G+LF +R+ + +
Sbjct: 108 LSIPGVYLDVIRPAAIEVSFKDENGRPRKLKADDLLARVIQHEMDHLNGVLFVDRVENTI 167
>gi|170078943|ref|YP_001735581.1| peptide deformylase [Synechococcus sp. PCC 7002]
gi|238689048|sp|B1XJP0.1|DEF_SYNP2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|169886612|gb|ACB00326.1| peptide deformylase [Synechococcus sp. PCC 7002]
Length = 187
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 78/120 (65%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY + GIGL+APQVG+N +L+V + E +VL+NP + K+ ++ P+EEGC
Sbjct: 48 MLQTMYSSQGIGLAAPQVGVNKRLIVIDTDPENPANAPLVLINPEIKKFGQQLCPFEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG+H DV RP+ +++ RD G + S L +RV QHE DHL G++F +R+ +++
Sbjct: 108 LSIPGVHLDVIRPDEIEVSYRDEQGKPKRIKASGLLSRVIQHEIDHLDGVMFVDRVENEI 167
>gi|297720233|ref|NP_001172478.1| Os01g0636600 [Oryza sativa Japonica Group]
gi|255673494|dbj|BAH91208.1| Os01g0636600, partial [Oryza sativa Japonica Group]
Length = 198
Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 62/70 (88%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVMYKTDGIGLSAPQVG+NVQLMVFNP G +GEGEEIVLVNP V K S +++ YEE C
Sbjct: 113 MFDVMYKTDGIGLSAPQVGVNVQLMVFNPAGVKGEGEEIVLVNPVVYKMSKRLLVYEESC 172
Query: 61 LSFPGIHADV 70
LSFPGI+A+V
Sbjct: 173 LSFPGIYANV 182
>gi|452825653|gb|EME32648.1| peptide deformylase [Galdieria sulphuraria]
Length = 269
Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEG-EEIVLVNPRVNKYSNKMIPYEEG 59
MF VMY G+GL+APQVGIN +LMV+NP G+ ++V+VNP++ S+K + EG
Sbjct: 126 MFQVMYADRGVGLAAPQVGINQRLMVYNPTGKPSSFLSQVVMVNPKIVDCSDKKVVDLEG 185
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
CLSFPGI V R E V+++A G + + L AR+FQHE+DHL GILF +RM
Sbjct: 186 CLSFPGIAGKVSRHEWVRVEAFKPGGKKIKLKLEGWQARIFQHEYDHLDGILFIDRM 242
>gi|124506707|ref|XP_001351951.1| formylmethionine deformylase, putative [Plasmodium falciparum 3D7]
gi|23504979|emb|CAD51762.1| formylmethionine deformylase, putative [Plasmodium falciparum 3D7]
Length = 241
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 82/129 (63%), Gaps = 1/129 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEG 59
MFD+MY++ GIGLSAPQV I+ +++V+N + E R E E + +NP + + S + EG
Sbjct: 96 MFDIMYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEG 155
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLSFPGI VERP V I DING + L + +R+FQHEFDHL G LF ++MT
Sbjct: 156 CLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQV 215
Query: 120 VLDSIREQL 128
+R +L
Sbjct: 216 DKKKVRPKL 224
>gi|40889670|pdb|1RL4|A Chain A, Plasmodium Falciparum Peptide Deformylase Complex With
Inhibitor
gi|40889671|pdb|1RL4|B Chain B, Plasmodium Falciparum Peptide Deformylase Complex With
Inhibitor
Length = 188
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 82/129 (63%), Gaps = 1/129 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEG 59
MFD+MY++ GIGLSAPQV I+ +++V+N + E R E E + +NP + + S + EG
Sbjct: 40 MFDIMYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEG 99
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLSFPGI VERP V I DING + L + +R+FQHEFDHL G LF ++MT
Sbjct: 100 CLSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQV 159
Query: 120 VLDSIREQL 128
+R +L
Sbjct: 160 DKKKVRPKL 168
>gi|376007137|ref|ZP_09784341.1| Peptide deformylase 1 (Polypeptide deformylase 1) [Arthrospira sp.
PCC 8005]
gi|375324513|emb|CCE20094.1| Peptide deformylase 1 (Polypeptide deformylase 1) [Arthrospira sp.
PCC 8005]
Length = 187
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 79/120 (65%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG++ Q++V + + +VL+NP + K S ++ P++EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGVHKQVIVIDCEPDNAATPPLVLINPTIKKSSRQLSPFQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RPE V++ +D NG S+ ++L R QHE DHLQG+LF +R+ + +
Sbjct: 108 LSIPGVYMDVVRPEEVEVAFKDENGRPRSILATELLCRAIQHEIDHLQGVLFVDRVDNQL 167
>gi|209526681|ref|ZP_03275205.1| peptide deformylase [Arthrospira maxima CS-328]
gi|209492917|gb|EDZ93248.1| peptide deformylase [Arthrospira maxima CS-328]
Length = 187
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 79/120 (65%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG++ Q++V + + +VL+NP + K S ++ P++EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGVHKQVIVIDCEPDNAATPPLVLINPTIKKSSRELSPFQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RPE V++ +D NG S+ ++L R QHE DHLQG+LF +R+ + +
Sbjct: 108 LSIPGVYMDVVRPEEVEVTFKDENGRPRSILATELLCRAIQHEIDHLQGVLFVDRVDNQL 167
>gi|423064021|ref|ZP_17052811.1| peptide deformylase [Arthrospira platensis C1]
gi|406714438|gb|EKD09603.1| peptide deformylase [Arthrospira platensis C1]
Length = 181
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 79/120 (65%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG++ Q++V + + +VL+NP + K S ++ P++EGC
Sbjct: 42 MLQTMYSADGIGLAAPQVGVHKQVIVIDCEPDNAATPPLVLINPTIKKSSRELSPFQEGC 101
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RPE V++ +D NG S+ ++L R QHE DHLQG+LF +R+ + +
Sbjct: 102 LSIPGVYMDVVRPEEVEVTFKDENGRPRSILATELLCRAIQHEIDHLQGVLFVDRVDNQL 161
>gi|409992195|ref|ZP_11275399.1| peptide deformylase [Arthrospira platensis str. Paraca]
gi|291565688|dbj|BAI87960.1| peptide deformylase [Arthrospira platensis NIES-39]
gi|409936931|gb|EKN78391.1| peptide deformylase [Arthrospira platensis str. Paraca]
Length = 187
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 77/116 (66%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG++ Q++V + + +VL+NP + K S ++ P++EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGVHKQVIVIDCEPDNAATPPLVLINPTIKKSSRELSPFQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LS PG++ DV RPE V++ +D NG ++ ++L R QHE DHLQG+LF +R+
Sbjct: 108 LSIPGVYMDVVRPEEVEVTFKDENGRPRTILATELLCRAIQHEIDHLQGVLFVDRV 163
>gi|83273759|ref|XP_729539.1| polypeptide deformylase [Plasmodium yoelii yoelii 17XNL]
gi|23487628|gb|EAA21104.1| polypeptide deformylase, putative [Plasmodium yoelii yoelii]
Length = 236
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/132 (48%), Positives = 83/132 (62%), Gaps = 7/132 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYS---NKMIPY 56
MF MY+ GIGLSAPQV I+ +++V+N + E R E E V +NP + + S NK+I
Sbjct: 91 MFKAMYENKGIGLSAPQVNISKRIIVWNALYEKRDEKNERVFINPLIVQESAVKNKLI-- 148
Query: 57 EEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
EGCLSFP I A VERP V I DING + L + ARVFQHE+DHL G+LF +R+
Sbjct: 149 -EGCLSFPNIEAKVERPAIVSISYYDINGNKHLKILKGIHARVFQHEYDHLNGVLFIDRI 207
Query: 117 TDDVLDSIREQL 128
T I+ +L
Sbjct: 208 TQTEKQKIKGKL 219
>gi|302779750|ref|XP_002971650.1| hypothetical protein SELMODRAFT_96122 [Selaginella moellendorffii]
gi|300160782|gb|EFJ27399.1| hypothetical protein SELMODRAFT_96122 [Selaginella moellendorffii]
Length = 166
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 84/131 (64%), Gaps = 10/131 (7%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M DV Y+ DG+GLSAPQVG+N +LMVFNP GERG+G+E V VNP + K+ + E
Sbjct: 34 MLDVTYRRDGVGLSAPQVGVNARLMVFNPEGERGKGKEYVFVNPMIVKFGKE----REAR 89
Query: 61 LSFPG---IHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
SF + D R E + A+DING +F + A +F+HE+DHL+G+L+ ++MT
Sbjct: 90 FSFIACVFVSRDRYRSE---LKAQDINGKKFGTAFRGWTAGIFRHEYDHLEGVLYIDQMT 146
Query: 118 DDVLDSIREQL 128
L+SI ++L
Sbjct: 147 PKSLNSIGQEL 157
>gi|323448077|gb|EGB03980.1| hypothetical protein AURANDRAFT_33186 [Aureococcus anophagefferens]
Length = 225
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 75/113 (66%), Gaps = 1/113 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGE-GEEIVLVNPRVNKYSNKMIPYEEG 59
MFD+MY G+GL+APQVG+N +LMVFNP G+ G+E+ L NPR+ S ++ +EG
Sbjct: 84 MFDLMYAAGGVGLAAPQVGVNARLMVFNPSGDAARTGDEVALANPRIVAASAELEVGDEG 143
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILF 112
CLSFPG+ V R V++ D+ G S + + ARVFQHE+DHL G+++
Sbjct: 144 CLSFPGMGGPVARHAWVEVAGLDLEGRAISRAYAGWDARVFQHEYDHLDGVVY 196
>gi|434385409|ref|YP_007096020.1| peptide deformylase [Chamaesiphon minutus PCC 6605]
gi|428016399|gb|AFY92493.1| peptide deformylase [Chamaesiphon minutus PCC 6605]
Length = 190
Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 85/129 (65%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGI+ QL+V + ++ E ++L+NP + KY + +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGIHKQLIVIDCELDKPEAPPLILINPTIKKYGKALAKDQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV+RPE++++ RD +G ++ L AR QHE DHL G+LF +R+ +++
Sbjct: 108 LSIPGVYLDVQRPETLELAYRDESGRPRTLKADGLLARAIQHEMDHLNGVLFVDRVENEL 167
Query: 121 LDSIREQLE 129
++ E+L+
Sbjct: 168 --ALTEELK 174
>gi|428777407|ref|YP_007169194.1| peptide deformylase [Halothece sp. PCC 7418]
gi|428691686|gb|AFZ44980.1| peptide deformylase [Halothece sp. PCC 7418]
Length = 188
Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 77/121 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG+N Q++V + ++L+NP + YS ++ EEGC
Sbjct: 48 MIQTMYAEDGIGLAAPQVGVNKQMLVIDCDPNNTATPPLILINPEIKSYSQELATGEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG+ DV RPE+V++ +D +G + S L ARV QHE DHL G+LF +R+ +D+
Sbjct: 108 LSIPGVFLDVVRPEAVEVKYKDESGRPQKMQASGLLARVIQHELDHLHGVLFVDRVPNDL 167
Query: 121 L 121
+
Sbjct: 168 V 168
>gi|428780979|ref|YP_007172765.1| peptide deformylase [Dactylococcopsis salina PCC 8305]
gi|428695258|gb|AFZ51408.1| peptide deformylase [Dactylococcopsis salina PCC 8305]
Length = 189
Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 77/121 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVG+N Q++V + +VL+NP + YS ++ EEGC
Sbjct: 49 MVQTMYAEQGIGLAAPQVGVNKQMLVIDCDPNNTATPPLVLINPEIQTYSPELATGEEGC 108
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RPE+V++ RD +G + S L ARV QHE DHL G+LF +R+ +D+
Sbjct: 109 LSIPGVYLDVVRPEAVQVKFRDESGRPQKMKASGLLARVIQHELDHLHGVLFVDRVRNDL 168
Query: 121 L 121
+
Sbjct: 169 V 169
>gi|126661353|ref|ZP_01732418.1| peptide deformylase [Cyanothece sp. CCY0110]
gi|126617360|gb|EAZ88164.1| peptide deformylase [Cyanothece sp. CCY0110]
Length = 187
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 85/129 (65%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY + GIGL+APQV I+ QL+V + + E ++L+NP++ + S ++ EEGC
Sbjct: 48 MLQTMYSSHGIGLAAPQVAIHKQLIVIDCEPDNPENPPLILINPKITRVSEELCVVEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RP+++++ +D G + +DL ARV QHE DHL G++F +R+ +D+
Sbjct: 108 LSIPGVYLDVTRPKTIEVSFKDEQGKPRKIQATDLLARVIQHEMDHLNGVMFVDRVENDL 167
Query: 121 LDSIREQLE 129
++ E+L+
Sbjct: 168 --ALTEKLQ 174
>gi|113474637|ref|YP_720698.1| peptide deformylase [Trichodesmium erythraeum IMS101]
gi|110165685|gb|ABG50225.1| peptide deformylase [Trichodesmium erythraeum IMS101]
Length = 187
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 76/120 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQV + Q++V + +VL+NP + KYSN + ++EGC
Sbjct: 48 MLQTMYTADGIGLAAPQVNVQKQVIVIDCEPTNSATPPLVLINPTIKKYSNDICLFQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV+RP +++ +D NG ++ +L +R QHE DHLQGILF +R+ + +
Sbjct: 108 LSIPGVYLDVQRPSEIEVAYKDENGRPQTLQAQELLSRAIQHEMDHLQGILFVDRVENKL 167
>gi|218248691|ref|YP_002374062.1| peptide deformylase [Cyanothece sp. PCC 8801]
gi|257061756|ref|YP_003139644.1| peptide deformylase [Cyanothece sp. PCC 8802]
gi|218169169|gb|ACK67906.1| peptide deformylase [Cyanothece sp. PCC 8801]
gi|256591922|gb|ACV02809.1| peptide deformylase [Cyanothece sp. PCC 8802]
Length = 187
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 79/118 (66%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY ++GIGL+APQVG++ QL+V + + I+L+NP++ ++S ++ EEGC
Sbjct: 48 MLQTMYSSNGIGLAAPQVGVHKQLIVVDCDPNDPANQPIILINPQITRFSQELCVVEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS PG++ DV RP+++++ RD G + +DL ARV QHE DHL G++F +R+ +
Sbjct: 108 LSIPGVYLDVTRPKAIEVSFRDEQGKPRKLQATDLLARVIQHEMDHLNGVMFVDRVNN 165
>gi|257457589|ref|ZP_05622756.1| peptide deformylase [Treponema vincentii ATCC 35580]
gi|257444975|gb|EEV20051.1| peptide deformylase [Treponema vincentii ATCC 35580]
Length = 173
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 81/124 (65%), Gaps = 4/124 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF M + +GIGL+APQ+G NV+L + +G E V +NP + S K YEEGC
Sbjct: 32 MFITMDEDNGIGLAAPQIGKNVRLFIVKI----DDGIERVFINPLIVGTSEKQCSYEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + ADV RPE+V + +D+NG R ++ + L ARV QHE+DHL+G+LF +R+++
Sbjct: 88 LSIPKMFADVVRPEAVTVQYQDMNGRRRTIEATGLLARVIQHEYDHLEGVLFIDRLSEKE 147
Query: 121 LDSI 124
DS+
Sbjct: 148 RDSL 151
>gi|386347804|ref|YP_006046053.1| Peptide deformylase [Spirochaeta thermophila DSM 6578]
gi|339412771|gb|AEJ62336.1| Peptide deformylase [Spirochaeta thermophila DSM 6578]
Length = 163
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 83/129 (64%), Gaps = 8/129 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD+M++ +GIGL+APQVGI+ + + + EGE +V +NP + S ++ +EEGC
Sbjct: 32 MFDLMHEANGIGLAAPQVGISQRFFICHV----PEGEPLVFINPEITATSPELATFEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ADV RP +V++ A ++ G F + L ARV QHEFDHL G+LF +R+
Sbjct: 88 LSIPQIYADVVRPAAVEVSAWNLQGKPFRMEADGLLARVIQHEFDHLNGVLFLDRLP--- 144
Query: 121 LDSIREQLE 129
RE+LE
Sbjct: 145 -SKKRERLE 152
>gi|434399992|ref|YP_007133996.1| peptide deformylase [Stanieria cyanosphaera PCC 7437]
gi|428271089|gb|AFZ37030.1| peptide deformylase [Stanieria cyanosphaera PCC 7437]
Length = 187
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 85/129 (65%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG+N QL+V + + + +VL+NP++ ++S++ EEGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGVNKQLIVIDCELDNPDHPPLVLINPKITRFSSQECITEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ +V RPE+V++ +D G + S L AR QHE DHL G++F +R+ +++
Sbjct: 108 LSIPGVYLEVTRPEAVEVSFKDEQGKPRKLQASGLLARAIQHEMDHLNGVMFVDRVENEI 167
Query: 121 LDSIREQLE 129
++ E+L+
Sbjct: 168 --ALTEELK 174
>gi|223994725|ref|XP_002287046.1| dubious peptide deformylase [Thalassiosira pseudonana CCMP1335]
gi|220978361|gb|EED96687.1| dubious peptide deformylase [Thalassiosira pseudonana CCMP1335]
Length = 180
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 91/130 (70%), Gaps = 1/130 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEG-EEIVLVNPRVNKYSNKMIPYEEG 59
MF VMY T+G GL+APQVGIN +LMV+N G+ +E+++VNP++ ++S+ +EG
Sbjct: 39 MFLVMYATNGAGLAAPQVGINKRLMVYNESGDSKRWMQEVIMVNPKIVEFSSATDIEQEG 98
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLSFP + DV+R + +K++A+++ G + + AR+FQHE+DHL G+++ +R++++
Sbjct: 99 CLSFPEMGGDVQRSKWIKVEAQNLKGKKIKKKFTGWEARIFQHEYDHLDGVVYVDRLSEE 158
Query: 120 VLDSIREQLE 129
++ +L+
Sbjct: 159 GRKEVQGRLD 168
>gi|17230571|ref|NP_487119.1| peptide deformylase [Nostoc sp. PCC 7120]
gi|23396564|sp|Q8YSK6.1|DEF1_ANASP RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|17132173|dbj|BAB74778.1| polypeptide deformylase [Nostoc sp. PCC 7120]
Length = 187
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 78/120 (65%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +DGIGL+APQVGIN QL+V + + ++L+NP + + S ++ +EGC
Sbjct: 48 MLQTMYSSDGIGLAAPQVGINKQLIVIDCEPDNPANPPLILINPTIKQVSREICSAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV+RPE V++ +D NG ++ +DL R QHE DHL G++F +R+ + +
Sbjct: 108 LSIPGVYMDVKRPEVVEVAYKDENGRPQTLKATDLLGRCIQHEMDHLNGVVFVDRVDNSL 167
>gi|427417991|ref|ZP_18908174.1| peptide deformylase [Leptolyngbya sp. PCC 7375]
gi|425760704|gb|EKV01557.1| peptide deformylase [Leptolyngbya sp. PCC 7375]
Length = 185
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 77/120 (64%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGI+ Q++V + E + ++L+NP++ + S +M +EGC
Sbjct: 46 MLQTMYSEDGIGLAAPQVGIHKQILVVDTDPEEAANKPLILINPKITRNSKEMACGQEGC 105
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG+ DV RP ++++ +D NG + DL ARV QHE DHL G++F +R+ + +
Sbjct: 106 LSIPGVFLDVIRPAAIEVSYKDENGRPQKIKADDLLARVIQHEMDHLNGVMFVDRVDNAI 165
>gi|428202949|ref|YP_007081538.1| peptide deformylase [Pleurocapsa sp. PCC 7327]
gi|427980381|gb|AFY77981.1| peptide deformylase [Pleurocapsa sp. PCC 7327]
Length = 188
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 85/129 (65%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY ++G+GL+APQVGI+ QL+V + + +VL+NP++ Y +++ +EEGC
Sbjct: 48 MLQTMYSSNGVGLAAPQVGIHKQLIVIDCEPDNPANPPLVLINPQITSYGSELCDFEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RPE++++ +D G + S ARV QHE DHL+G+LF +R+ + +
Sbjct: 108 LSIPGVYMDVTRPETIEVSFKDEQGRPRKLKASGFLARVIQHEMDHLEGVLFVDRVENSL 167
Query: 121 LDSIREQLE 129
++ E+L+
Sbjct: 168 --ALTEELK 174
>gi|75907053|ref|YP_321349.1| peptide deformylase [Anabaena variabilis ATCC 29413]
gi|75700778|gb|ABA20454.1| peptide deformylase [Anabaena variabilis ATCC 29413]
Length = 187
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 77/120 (64%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGIN QL+V + + +VL+NP + + S ++ +EGC
Sbjct: 48 MLQTMYSNDGIGLAAPQVGINKQLIVIDCEPDNPANPPLVLINPTIKQVSREICSAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV+RPE V++ +D NG ++ +DL R QHE DHL G++F +R+ + +
Sbjct: 108 LSIPGVYMDVKRPEVVEVAYKDENGRPQTLKATDLLGRCIQHEMDHLNGVVFVDRVDNSL 167
>gi|172039521|ref|YP_001806022.1| peptide deformylase [Cyanothece sp. ATCC 51142]
gi|354552216|ref|ZP_08971524.1| peptide deformylase [Cyanothece sp. ATCC 51472]
gi|171700975|gb|ACB53956.1| formylmethionine deformylase [Cyanothece sp. ATCC 51142]
gi|353555538|gb|EHC24926.1| peptide deformylase [Cyanothece sp. ATCC 51472]
Length = 187
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 84/129 (65%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY + GIGL+APQV I+ QL+V + + ++L+NP++ + S ++ EEGC
Sbjct: 48 MLQTMYSSHGIGLAAPQVAIHKQLIVIDCEPDNPANPPLILINPKITRVSQELCVVEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RP+++++ +D G + +DL ARV QHE DHL G++F +R+ +D+
Sbjct: 108 LSIPGVYLDVTRPKTIEVSFKDEQGKPRKIQATDLLARVIQHEMDHLNGVMFVDRVDNDL 167
Query: 121 LDSIREQLE 129
++ E+L+
Sbjct: 168 --ALTEKLQ 174
>gi|307719714|ref|YP_003875246.1| peptide deformylase [Spirochaeta thermophila DSM 6192]
gi|306533439|gb|ADN02973.1| peptide deformylase [Spirochaeta thermophila DSM 6192]
Length = 163
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 83/129 (64%), Gaps = 8/129 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD+M++ +GIGL+APQVGI+ + + + EGE +V +NP + S ++ +EEGC
Sbjct: 32 MFDLMHEANGIGLAAPQVGISQRFFICHV----PEGEPLVFINPEITATSPELTTFEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ADV RP +V++ A ++ G F + + ARV QHEFDHL G+LF +R+
Sbjct: 88 LSIPQIYADVVRPAAVEVSAWNLQGKPFRMEADGMLARVIQHEFDHLNGVLFLDRLP--- 144
Query: 121 LDSIREQLE 129
RE+LE
Sbjct: 145 -SKKRERLE 152
>gi|428301708|ref|YP_007140014.1| peptide deformylase [Calothrix sp. PCC 6303]
gi|428238252|gb|AFZ04042.1| peptide deformylase [Calothrix sp. PCC 6303]
Length = 187
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 80/120 (66%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +DGIGL+APQVGI+ QL+V + ++ E + +VL+NP V + S ++ +EGC
Sbjct: 48 MLQTMYSSDGIGLAAPQVGIHKQLIVIDLEPDKPEHQPLVLINPVVKQVSKEVCAAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RP S+++ +D NG ++ +DL AR HE DHL G++F +R+ + +
Sbjct: 108 LSIPGVYLDVTRPLSLELSYKDENGTPKTLKATDLLARCILHEMDHLNGVVFVDRVENSL 167
>gi|37521797|ref|NP_925174.1| peptide deformylase [Gloeobacter violaceus PCC 7421]
gi|39930959|sp|Q7NIF5.1|DEF2_GLOVI RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
gi|35212795|dbj|BAC90169.1| polypeptide deformylase [Gloeobacter violaceus PCC 7421]
Length = 187
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 76/120 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG+N +++V + E +VL+NP + ++S+ + +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGVNKRMIVVDIDPENAARPPLVLINPLIKQFSSDLAVDQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ADV RPE V RD+NG ++ + L AR QHE DHL G+LF +R+ + +
Sbjct: 108 LSVPSIYADVRRPERVVATYRDLNGRPVTLEATGLLARCIQHEIDHLDGVLFVDRVENQI 167
>gi|397619820|gb|EJK65417.1| hypothetical protein THAOC_13720 [Thalassiosira oceanica]
Length = 208
Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 88/129 (68%), Gaps = 1/129 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEG 59
MF VMY T+G+GL+APQVGIN +LMV+N G+ + +E + VNP++ +YS+ EG
Sbjct: 67 MFLVMYATNGVGLAAPQVGINKRLMVYNDTGDPKKWMKENIFVNPKIVEYSDAKDIETEG 126
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLSFP ++ DV+R + +KI+A+++ G + ARVFQHE+DHL+ ++ +R+TD+
Sbjct: 127 CLSFPDMNGDVQRSKWIKIEAQNLKGKKIKKKFKGWEARVFQHEYDHLERTVYIDRLTDE 186
Query: 120 VLDSIREQL 128
++ +L
Sbjct: 187 GRKEVQPRL 195
>gi|416394208|ref|ZP_11686121.1| Peptide deformylase [Crocosphaera watsonii WH 0003]
gi|357263333|gb|EHJ12355.1| Peptide deformylase [Crocosphaera watsonii WH 0003]
Length = 188
Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 83/129 (64%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY + GIGL+APQV I QL+V + + ++L+NP++ +S ++ EEGC
Sbjct: 48 MLQTMYSSQGIGLAAPQVAIQKQLIVVDCEPDNPANSPLILINPKITGFSKELCVVEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RP+++++ +D G + ++L ARV QHE DHL G++F +R+ +D+
Sbjct: 108 LSIPGVYLDVTRPKAIEVSFKDEQGKPRKIQATELLARVIQHEMDHLNGVMFVDRVDNDL 167
Query: 121 LDSIREQLE 129
++ EQL+
Sbjct: 168 --ALTEQLQ 174
>gi|67923097|ref|ZP_00516588.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501]
gi|67855050|gb|EAM50318.1| Formylmethionine deformylase [Crocosphaera watsonii WH 8501]
Length = 188
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 83/129 (64%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY + GIGL+APQV I QL+V + + ++L+NP++ +S ++ EEGC
Sbjct: 48 MLQTMYSSQGIGLAAPQVAIQKQLIVVDCEPDNPANSPLILINPKITVFSKELCVVEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RP+++++ +D G + ++L ARV QHE DHL G++F +R+ +D+
Sbjct: 108 LSIPGVYLDVTRPKAIEVSFKDEQGKPRKIQATELLARVIQHEMDHLNGVMFVDRVDNDL 167
Query: 121 LDSIREQLE 129
++ EQL+
Sbjct: 168 --ALTEQLQ 174
>gi|428181609|gb|EKX50472.1| hypothetical protein GUITHDRAFT_66830, partial [Guillardia theta
CCMP2712]
Length = 171
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 85/129 (65%), Gaps = 10/129 (7%)
Query: 1 MFDVMYKTDGIGLSAPQ---VGINVQLMVFNPVGERGEG-EEIVLVNPRVNKYSNKMIPY 56
MF VMY + G+GL+APQ VGIN ++MVFNP G++ + +EI L+NP++ + S
Sbjct: 34 MFLVMYASRGVGLAAPQAKQVGINKRIMVFNPEGDKKKWLQEIALINPKIVEMSEGTDVE 93
Query: 57 EEGCLSFPGIHADVERPESVKIDARDING------ARFSVSLSDLPARVFQHEFDHLQGI 110
E CLSFPG+ V R + +KI+A+D+ G AR + + ARVFQHE+DHL+G+
Sbjct: 94 TEACLSFPGMQGKVRRHKWIKIEAQDLKGKTIKKKARNFLQFTGWTARVFQHEYDHLEGV 153
Query: 111 LFFERMTDD 119
++ +R+ D+
Sbjct: 154 VYIDRLEDE 162
>gi|218439032|ref|YP_002377361.1| peptide deformylase [Cyanothece sp. PCC 7424]
gi|218171760|gb|ACK70493.1| peptide deformylase [Cyanothece sp. PCC 7424]
Length = 187
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 80/120 (66%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY ++GIGL+APQV +N QL+V + + ++L+NP++ + S ++ +EEGC
Sbjct: 48 MLQTMYSSNGIGLAAPQVAVNKQLLVIDCEPDNPANPPLILINPQITQSSQELCQFEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RP+ +++ +D +G + +DL ARV QHE DHL GI+F +R+ +++
Sbjct: 108 LSIPGVYLDVVRPKVIEVSYKDESGRPKKLKATDLLARVIQHEMDHLNGIMFVDRVGNNL 167
>gi|78778455|ref|YP_396567.1| peptide deformylase [Prochlorococcus marinus str. MIT 9312]
gi|123727935|sp|Q31DB4.1|DEF_PROM9 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|78711954|gb|ABB49131.1| peptide deformylase [Prochlorococcus marinus str. MIT 9312]
Length = 201
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 77/128 (60%), Gaps = 2/128 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQ+GIN +L+V + E E ++L+NP + Y + YEEGC
Sbjct: 62 MIQSMYAAKGIGLAAPQIGINKELLVIDVNFEDSAAEPLILINPEITDYGTTLNSYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ +V RP ++K+ RD G + L AR QHE DHL GILF +R+T
Sbjct: 122 LSIPGVYLNVVRPSTIKLKFRDEMGRPRKMKADGLLARCIQHEMDHLNGILFVDRVTSK- 180
Query: 121 LDSIREQL 128
D ++++L
Sbjct: 181 -DDLKKEL 187
>gi|307150582|ref|YP_003885966.1| peptide deformylase [Cyanothece sp. PCC 7822]
gi|306980810|gb|ADN12691.1| peptide deformylase [Cyanothece sp. PCC 7822]
Length = 187
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 85/129 (65%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +GIGL+APQV +N QL+V + + + I+L+NP++ +S + +EEGC
Sbjct: 48 MLQTMYSANGIGLAAPQVAVNKQLLVVDCEPDNATNQPIILINPQITHFSRDLCQFEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RP+++++ +D +G + + L ARV QHE DHL G++F +R+ +++
Sbjct: 108 LSIPGVYLDVVRPKAIEVSFKDESGRPKKLKATGLLARVIQHEMDHLNGVMFVDRVGNNL 167
Query: 121 LDSIREQLE 129
++ E+L+
Sbjct: 168 --ALTEELK 174
>gi|443318180|ref|ZP_21047450.1| peptide deformylase [Leptolyngbya sp. PCC 6406]
gi|442782222|gb|ELR92292.1| peptide deformylase [Leptolyngbya sp. PCC 6406]
Length = 188
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 78/120 (65%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +DGIGL+APQVG+N Q++V + + ++L+NP+V + S K+ EEGC
Sbjct: 48 MLQTMYSSDGIGLAAPQVGVNKQVIVIDLEPDNPAALPLILINPKVLRTSQKLCTGEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RP ++++ +D NG ++ DL AR HE DHL G++F +R+T+ +
Sbjct: 108 LSIPGVYLDVVRPVAIEVSYKDENGRPQKLAADDLLARCILHEMDHLAGVMFVDRVTNQL 167
>gi|442570638|pdb|4DR9|A Chain A, Crystal Structure Of A Peptide Deformylase From
Synechococcus Elongatus In Complex With Actinonin
gi|442570639|pdb|4DR9|B Chain B, Crystal Structure Of A Peptide Deformylase From
Synechococcus Elongatus In Complex With Actinonin
gi|442570640|pdb|4DR9|C Chain C, Crystal Structure Of A Peptide Deformylase From
Synechococcus Elongatus In Complex With Actinonin
gi|442570641|pdb|4DR9|D Chain D, Crystal Structure Of A Peptide Deformylase From
Synechococcus Elongatus In Complex With Actinonin
Length = 192
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 75/118 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGIN QL+V + E + +VL+NP++ + + + +EGC
Sbjct: 50 MLQTMYSADGIGLAAPQVGINKQLIVIDLELEDEQAPPLVLINPKIERTAGDLEQCQEGC 109
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS PG++ DVERPE V++ +D NG + L AR QHE DHL G+LF +R+ +
Sbjct: 110 LSIPGVYLDVERPEIVEVSYKDENGRPQRLVADGLLARCIQHEMDHLNGVLFVDRVEN 167
>gi|56750222|ref|YP_170923.1| peptide deformylase [Synechococcus elongatus PCC 6301]
gi|81300149|ref|YP_400357.1| peptide deformylase [Synechococcus elongatus PCC 7942]
gi|56685181|dbj|BAD78403.1| polypeptide deformylase [Synechococcus elongatus PCC 6301]
gi|81169030|gb|ABB57370.1| peptide deformylase [Synechococcus elongatus PCC 7942]
Length = 192
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 75/118 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGIN QL+V + E + +VL+NP++ + + + +EGC
Sbjct: 50 MLQTMYSADGIGLAAPQVGINKQLIVIDLELEDEQAPPLVLINPKIERTAGDLEQCQEGC 109
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS PG++ DVERPE V++ +D NG + L AR QHE DHL G+LF +R+ +
Sbjct: 110 LSIPGVYLDVERPEIVEVSYKDENGRPQRLVADGLLARCIQHEMDHLNGVLFVDRVEN 167
>gi|401412227|ref|XP_003885561.1| Peptide deformylase, related [Neospora caninum Liverpool]
gi|325119980|emb|CBZ55533.1| Peptide deformylase, related [Neospora caninum Liverpool]
Length = 374
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 77/116 (66%), Gaps = 1/116 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+F +MY+ GIGL+APQVG+++Q++V+NP G R +E V +NPR+ S ++ EG
Sbjct: 256 LFAIMYRDGGIGLAAPQVGLSLQMIVWNPTGGFREVSQERVFLNPRILSLSGPLVSDVEG 315
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
CLS PG+ A VERP ++ + G + V+LS L ARV QHE DHL GILF +R
Sbjct: 316 CLSVPGVFAPVERPMHARVRYTSLEGDQHEVNLSGLEARVVQHEIDHLHGILFVDR 371
>gi|221481821|gb|EEE20191.1| peptide deformylase, putative [Toxoplasma gondii GT1]
Length = 353
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 76/117 (64%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ VMY+ G+GL+APQVG++VQ++V+NP G+ R E V +NPR+ ++ EG
Sbjct: 217 LLAVMYRDGGVGLAAPQVGVSVQMIVWNPTGDVRESSRERVFLNPRLLSLYGPLVSDVEG 276
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
CLS PG+ A VERP ++ + G + V+LS L ARV QHE DHL GILF +R+
Sbjct: 277 CLSVPGVFAPVERPLHARVRYTSLEGIQREVTLSGLEARVVQHEIDHLHGILFVDRV 333
>gi|330837393|ref|YP_004412034.1| peptide deformylase [Sphaerochaeta coccoides DSM 17374]
gi|329749296|gb|AEC02652.1| peptide deformylase [Sphaerochaeta coccoides DSM 17374]
Length = 167
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 77/118 (65%), Gaps = 4/118 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD + + G+GL+APQVG++ +L + + G GE+ V +NP + + S + PYEEGC
Sbjct: 33 MFDSLAQERGVGLAAPQVGVSQRLFIVDIEG----GEKGVFINPEIIETSMEQTPYEEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS PGI DV RP+ + + A+D+ G F+V + ARV QHE+DHL G LF +R+ +
Sbjct: 89 LSIPGIWHDVVRPQRITMQAQDVTGKFFTVKADGMFARVLQHEYDHLNGTLFIDRLNE 146
>gi|325972108|ref|YP_004248299.1| peptide deformylase [Sphaerochaeta globus str. Buddy]
gi|324027346|gb|ADY14105.1| Peptide deformylase [Sphaerochaeta globus str. Buddy]
Length = 167
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 75/119 (63%), Gaps = 4/119 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ M + DG+GL+APQVG+N +L V + G E +NP++ + S + EEGC
Sbjct: 33 MFETMAEADGVGLAAPQVGVNSRLFVIHIQG----SENRAYINPQIIETSIETDTSEEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
LS PG+ DV+RP V + A+D+ G F+V L AR QHE+DHL G+LF +R+ D+
Sbjct: 89 LSIPGVWHDVQRPARVTVQAQDVEGKVFTVKAEGLLARAIQHEYDHLNGVLFIDRLNDE 147
>gi|32477751|ref|NP_870745.1| peptide deformylase [Rhodopirellula baltica SH 1]
gi|417300627|ref|ZP_12087829.1| peptide deformylase [Rhodopirellula baltica WH47]
gi|421615286|ref|ZP_16056316.1| peptide deformylase [Rhodopirellula baltica SH28]
gi|440712473|ref|ZP_20893093.1| peptide deformylase [Rhodopirellula baltica SWK14]
gi|449132747|ref|ZP_21768751.1| peptide deformylase [Rhodopirellula europaea 6C]
gi|39930837|sp|Q7UHZ5.1|DEF_RHOBA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|32448305|emb|CAD77822.1| peptide deformylase [Rhodopirellula baltica SH 1]
gi|327543078|gb|EGF29520.1| peptide deformylase [Rhodopirellula baltica WH47]
gi|408493937|gb|EKJ98565.1| peptide deformylase [Rhodopirellula baltica SH28]
gi|436442827|gb|ELP35927.1| peptide deformylase [Rhodopirellula baltica SWK14]
gi|448888121|gb|EMB18454.1| peptide deformylase [Rhodopirellula europaea 6C]
Length = 201
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 83/129 (64%), Gaps = 1/129 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D+MY+ DG+GL+A QV + +++ V NP G+R EGE V++NP +++ +EGC
Sbjct: 34 MLDLMYEFDGVGLAANQVDLPIRMFVANPTGKRDEGESWVILNPEIDRPKGNDTA-QEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ V+RP++V++ D+ G + L ARV QHE DHL GI+FF+R+ ++
Sbjct: 93 LSVPGLYGQVKRPKTVRLRGFDLQGNEINQVLDGFMARVVQHEVDHLDGIMFFDRIGEEG 152
Query: 121 LDSIREQLE 129
L + LE
Sbjct: 153 LRDLEGHLE 161
>gi|148240477|ref|YP_001225864.1| peptide deformylase [Synechococcus sp. WH 7803]
gi|147849016|emb|CAK24567.1| Peptide deformylase [Synechococcus sp. WH 7803]
Length = 201
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 72/118 (61%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVG++ QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYTARGIGLAAPQVGVHQQLLVIDLDPETASSPPLVLINPEITSASASLETYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS PG++ DV RP +V++ RD G ++ L AR QHE DHL G+LF +R+TD
Sbjct: 122 LSIPGVYLDVVRPSAVQVSFRDEMGRPRTMKADGLMARCIQHEMDHLTGVLFVDRVTD 179
>gi|427722272|ref|YP_007069549.1| peptide deformylase [Leptolyngbya sp. PCC 7376]
gi|427353992|gb|AFY36715.1| peptide deformylase [Leptolyngbya sp. PCC 7376]
Length = 186
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 76/120 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY + GIGL+APQVGIN +L+V + E E E VL+NP + K+ M +EEGC
Sbjct: 48 MLQTMYSSYGIGLAAPQVGINKRLIVVDTDPENPENEAYVLINPEIKKFGKDMCGFEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ +V RP+ +++ RD G + S L +RV QHE DHL G++F +R+ + +
Sbjct: 108 LSIPGVNFEVLRPDEIEVSYRDELGKPKRIKASGLLSRVIQHEIDHLNGVMFVDRVDNQI 167
>gi|354565615|ref|ZP_08984789.1| Peptide deformylase [Fischerella sp. JSC-11]
gi|353548488|gb|EHC17933.1| Peptide deformylase [Fischerella sp. JSC-11]
Length = 187
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 75/120 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGIN Q++V + + +VL+NP + + S M +EGC
Sbjct: 48 MLQTMYSQDGIGLAAPQVGINKQVIVIDLEPDNPANSPLVLINPTIKQVSRDMCVAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV+RPE V+I +D G ++ SDL R QHE DHL G++F +R+ + +
Sbjct: 108 LSIPGVYMDVKRPEVVEISYKDEYGRPKTLKASDLLGRCIQHEIDHLNGVVFVDRVENSL 167
>gi|157412419|ref|YP_001483285.1| peptide deformylase [Prochlorococcus marinus str. MIT 9215]
gi|157386994|gb|ABV49699.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
MIT 9215]
Length = 201
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 74/117 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVGI+ +L+V + E E ++L+NP + Y + + YEEGC
Sbjct: 62 MLQSMYSAKGIGLAAPQVGISKELLVIDINFEDSAAEPLILINPEITAYGSTLNSYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PG++ +V RP ++K+ RD G ++ L AR QHE DHL+G+LF +R+T
Sbjct: 122 LSIPGVYLNVIRPSTIKLKFRDEMGRPRKMNADGLLARCIQHEVDHLKGVLFVDRVT 178
>gi|168704063|ref|ZP_02736340.1| peptide deformylase [Gemmata obscuriglobus UQM 2246]
Length = 184
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 84/130 (64%), Gaps = 1/130 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGE-GEEIVLVNPRVNKYSNKMIPYEEG 59
M ++MY+++G+GL+APQV ++ Q++V NP+GE + +E+V +NP + + I EG
Sbjct: 32 MVELMYRSEGLGLAAPQVTLDYQMIVLNPLGEADQPDQEVVAINPVIVEAKGSTINDREG 91
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLSFPG++ +V R ++V + ++ G + DL ARV+QHE DHLQG LF ++M
Sbjct: 92 CLSFPGLYQNVRRYKTVTVKFYNLKGELVQTTAHDLAARVWQHEIDHLQGTLFIDKMGSL 151
Query: 120 VLDSIREQLE 129
L ++ LE
Sbjct: 152 GLSRSQKDLE 161
>gi|158337779|ref|YP_001518955.1| peptide deformylase [Acaryochloris marina MBIC11017]
gi|359458949|ref|ZP_09247512.1| peptide deformylase [Acaryochloris sp. CCMEE 5410]
gi|158308020|gb|ABW29637.1| peptide deformylase [Acaryochloris marina MBIC11017]
Length = 189
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 77/121 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQV + QL+V + E + I+L+NP++ ++S+ + +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVAVGKQLIVVDTDPEEPANQPIILLNPKIRRHSDDLALGQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RP +++ +D G + +DL ARV QHE DHL G++F +R+ + +
Sbjct: 108 LSIPGVYLDVRRPAQIEVAYKDEQGRPQVIVATDLLARVIQHEMDHLTGVMFVDRVENSL 167
Query: 121 L 121
L
Sbjct: 168 L 168
>gi|406934444|gb|EKD68740.1| Peptide deformylase [uncultured bacterium]
Length = 170
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 82/129 (63%), Gaps = 5/129 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MYK GIGL+APQ+GI+++L+V++ G G +VL+NP + +S + YEEGC
Sbjct: 35 MIQTMYKAPGIGLAAPQIGISLRLVVYDA----GNGS-VVLINPEIIFWSEQTAAYEEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I A++ RP ++K A ++G +F +S L ARV QHE DHL G LF +++ D
Sbjct: 90 LSVPDITAEIIRPATIKFRAYGLDGYKFEKEVSGLEARVIQHECDHLFGTLFIDKLQDKD 149
Query: 121 LDSIREQLE 129
I +QL+
Sbjct: 150 KLLIEKQLK 158
>gi|87125300|ref|ZP_01081146.1| putative formylmethionine deformylase [Synechococcus sp. RS9917]
gi|86167069|gb|EAQ68330.1| putative formylmethionine deformylase [Synechococcus sp. RS9917]
Length = 201
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 74/119 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVG++ QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYTARGIGLAAPQVGVHKQLLVIDLDIENAAAPPLVLINPEITSASASVDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
LS PG++ DV RP ++++ RD G ++ L AR QHE DHL+G+LF +R+TD+
Sbjct: 122 LSIPGVYLDVVRPSAIQLSYRDEMGRPRTMKADGLMARCIQHEMDHLKGVLFVDRVTDE 180
>gi|254526876|ref|ZP_05138928.1| peptide deformylase [Prochlorococcus marinus str. MIT 9202]
gi|221538300|gb|EEE40753.1| peptide deformylase [Prochlorococcus marinus str. MIT 9202]
Length = 201
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 74/117 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVGI+ +L+V + E E ++L+NP + Y + + YEEGC
Sbjct: 62 MLQSMYSAKGIGLAAPQVGISKELLVIDINFEDSAAEPLILINPEITAYGSTLNSYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PG++ +V RP ++K+ RD G ++ L AR QHE DHL+G+LF +R+T
Sbjct: 122 LSIPGVYLNVIRPSTIKLKFRDEMGRPRKMNADGLLARCIQHEVDHLKGVLFVDRVT 178
>gi|283778512|ref|YP_003369267.1| peptide deformylase [Pirellula staleyi DSM 6068]
gi|283436965|gb|ADB15407.1| peptide deformylase [Pirellula staleyi DSM 6068]
Length = 222
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD+MY+ GIGL+A QV + ++L V N E+G+GEE+V +NP V + EEGC
Sbjct: 62 MFDLMYEAKGIGLAANQVDLPLRLFVINLTAEKGKGEELVFINP-VLSHPKGSAEAEEGC 120
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
LS PG++ V RP++V+++A ++ G S + L AR QHE DHL G++F +RM++
Sbjct: 121 LSLPGVYGQVVRPKTVQVNAYNLQGQEISAEVGGLLARCIQHENDHLDGVMFPDRMSES 179
>gi|159902617|ref|YP_001549961.1| peptide deformylase [Prochlorococcus marinus str. MIT 9211]
gi|159887793|gb|ABX08007.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
MIT 9211]
Length = 201
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 76/119 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVGI+ QL+V + E IVL+NP++ +S + YEEGC
Sbjct: 62 MLHSMYSAKGIGLAAPQVGIHKQLLVIDLDIENSTTPPIVLINPQITDFSAAIETYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
LS PG++ +V RP S+K++ RD G ++ L +R QHE DHL G+LF +R+T++
Sbjct: 122 LSIPGVYLNVIRPSSIKLNFRDEMGRPKKMNADGLLSRCIQHEMDHLNGVLFVDRVTNE 180
>gi|3023625|sp|P94601.1|DEF_FREDI RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|1772503|emb|CAA71353.1| polypeptide deformylase [Tolypothrix sp. PCC 7601]
Length = 187
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 77/120 (64%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGI+ QL+V + + +VL+NP + + S ++ +EGC
Sbjct: 48 MLQTMYSKDGIGLAAPQVGIHKQLIVIDLEPDNPANPPLVLINPTIKQVSKEICVAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P ++ DV+RPE V+I +D NG ++ +DL AR QHE DHL G++F +R+ + +
Sbjct: 108 LSIPNVYMDVKRPEVVEIAYKDENGRPKTLKATDLLARCIQHEMDHLNGVVFVDRVDNSL 167
>gi|443320089|ref|ZP_21049215.1| peptide deformylase [Gloeocapsa sp. PCC 73106]
gi|442790199|gb|ELR99806.1| peptide deformylase [Gloeocapsa sp. PCC 73106]
Length = 188
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 77/118 (65%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +GIGL+APQV IN Q++V + + ++L+NP++ +YS + +EEGC
Sbjct: 48 MLQTMYTANGIGLAAPQVNINKQIIVIDCEPDNPANPPLILINPQITRYSREKCGFEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS PG++ +V RPE++++ +D NG + S L +R QHE DHL+G+LF +R+ +
Sbjct: 108 LSIPGVYLEVIRPEAIEVSYKDENGRPQKIPASGLLSRAIQHEMDHLRGVLFVDRVQN 165
>gi|119510121|ref|ZP_01629260.1| peptide deformylase [Nodularia spumigena CCY9414]
gi|119465182|gb|EAW46080.1| peptide deformylase [Nodularia spumigena CCY9414]
Length = 187
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 80/120 (66%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +DGIGL+APQVGI+ QL+V + + + +VL+NP + + S ++ +EGC
Sbjct: 48 MLQTMYSSDGIGLAAPQVGIHKQLIVIDCEPDNPDHPPLVLINPTIKQMSKEVCVAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P ++ DV+RPE+V+I +D G ++ +DL AR QHE DHL+G++F +R+ + +
Sbjct: 108 LSIPKVYLDVKRPEAVEIAYKDEYGRPKTLKATDLLARCIQHEMDHLKGVVFVDRVENSL 167
>gi|123967617|ref|YP_001008475.1| peptide deformylase [Prochlorococcus marinus str. AS9601]
gi|158513947|sp|A2BNK7.1|DEF_PROMS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|123197727|gb|ABM69368.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
AS9601]
Length = 201
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 71/117 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQ+GIN +L+V + E E ++L+NP + + + YEEGC
Sbjct: 62 MLQSMYAAKGIGLAAPQIGINKELLVIDVNFEDSAAEPLILINPEITDFGTTLNSYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PG++ +V RP ++K+ RD G + L AR QHE DHL GILF +R+T
Sbjct: 122 LSIPGVYLNVVRPSTIKLKFRDEMGRPRKMKADGLLARCIQHEMDHLNGILFVDRVT 178
>gi|126695417|ref|YP_001090303.1| peptide deformylase [Prochlorococcus marinus str. MIT 9301]
gi|126542460|gb|ABO16702.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
MIT 9301]
Length = 201
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 71/117 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQ+GIN +L+V + E E ++L+NP + + + YEEGC
Sbjct: 62 MLQSMYAAKGIGLAAPQIGINKELLVIDVNFEDSAAEPLILINPEITDFGTTLNSYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PG++ +V RP ++K+ RD G + L AR QHE DHL GILF +R+T
Sbjct: 122 LSIPGVYLNVVRPSTIKLKFRDEMGRPRKMKADGLLARCIQHEMDHLNGILFVDRVT 178
>gi|42543585|pdb|1RQC|A Chain A, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|42543586|pdb|1RQC|B Chain B, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|42543587|pdb|1RQC|C Chain C, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|42543588|pdb|1RQC|D Chain D, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|42543589|pdb|1RQC|E Chain E, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|42543590|pdb|1RQC|F Chain F, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|42543591|pdb|1RQC|G Chain G, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|42543592|pdb|1RQC|H Chain H, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|42543593|pdb|1RQC|I Chain I, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|42543594|pdb|1RQC|J Chain J, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
Length = 185
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 79/128 (61%), Gaps = 1/128 (0%)
Query: 2 FDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
FD+ Y++ GIGLSAPQV I+ +++V+N + E R E E + +NP + + S + EGC
Sbjct: 35 FDIXYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPGI VERP V I DING + L + +R+FQHEFDHL G LF ++ T
Sbjct: 95 LSFPGIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKXTQVD 154
Query: 121 LDSIREQL 128
+R +L
Sbjct: 155 KKKVRPKL 162
>gi|237843361|ref|XP_002370978.1| peptide deformylase, putative [Toxoplasma gondii ME49]
gi|211968642|gb|EEB03838.1| peptide deformylase, putative [Toxoplasma gondii ME49]
gi|221502320|gb|EEE28053.1| peptide deformylase, putative [Toxoplasma gondii VEG]
gi|289064341|gb|ADC80546.1| peptide deformylase [Toxoplasma gondii]
Length = 353
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ VMY+ G+GL+APQVG++VQ++V+NP G+ R E V +NPR+ ++ EG
Sbjct: 217 LLAVMYRDGGVGLAAPQVGVSVQMIVWNPTGDVRESSRERVFLNPRLLSLYGPLVSDVEG 276
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
CLS PG+ A VERP ++ + G + +LS L ARV QHE DHL GILF +R+
Sbjct: 277 CLSVPGVFAPVERPLHARVRYTSLEGIQREATLSGLEARVVQHEIDHLHGILFVDRV 333
>gi|116073817|ref|ZP_01471079.1| peptide deformylase [Synechococcus sp. RS9916]
gi|116069122|gb|EAU74874.1| peptide deformylase [Synechococcus sp. RS9916]
Length = 201
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 73/118 (61%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVG++ QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYTAKGIGLAAPQVGVHKQLLVIDLDLETPSSPPLVLINPEITTASATVDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS PG++ DV RP ++++ RD G ++ L AR QHE DHL+G+LF +R+TD
Sbjct: 122 LSIPGVYLDVVRPTAIQLSYRDEMGRPKTMKADGLMARCIQHEMDHLKGVLFVDRVTD 179
>gi|389582919|dbj|GAB65655.1| formylmethionine deformylase [Plasmodium cynomolgi strain B]
Length = 241
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 83/129 (64%), Gaps = 1/129 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGE-EIVLVNPRVNKYSNKMIPYEEG 59
MF+VMY++ G+GL+APQV I+++++V+N + E+ + E E V +NP + + S EG
Sbjct: 96 MFNVMYESKGMGLAAPQVNISMRIIVWNALYEKKKMENERVFINPSIVEPSLIRSKLVEG 155
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLSFPGI V+RP V I D++G + L + AR+FQHE+DHL GILF +R +
Sbjct: 156 CLSFPGIEGKVDRPSVVSISYYDLDGNKHLKILKGIHARIFQHEYDHLDGILFIDRFSQS 215
Query: 120 VLDSIREQL 128
+R +L
Sbjct: 216 EKHKVRAKL 224
>gi|88807213|ref|ZP_01122725.1| peptide deformylase [Synechococcus sp. WH 7805]
gi|88788427|gb|EAR19582.1| peptide deformylase [Synechococcus sp. WH 7805]
Length = 183
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 72/118 (61%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVG++ QL+V + E +VL+NP + S + YEEGC
Sbjct: 44 MLRSMYTARGIGLAAPQVGVHQQLLVIDLDPETASSPPLVLINPEIISASASLDTYEEGC 103
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS PG++ DV RP +V++ RD G ++ L AR QHE DHL G+LF +R+TD
Sbjct: 104 LSIPGVYLDVVRPSAVQVSFRDEMGRPKTLKADGLMARCIQHEMDHLTGVLFVDRVTD 161
>gi|33864860|ref|NP_896419.1| peptide deformylase [Synechococcus sp. WH 8102]
gi|39930836|sp|Q7U9D4.1|DEF_SYNPX RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|33632383|emb|CAE06839.1| putative formylmethionine deformylase [Synechococcus sp. WH 8102]
Length = 201
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 73/120 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVGI+ QL+V + E +VL+NP ++ S + YEEGC
Sbjct: 62 MLRSMYTAKGIGLAAPQVGIHQQLLVIDLDLENAATPPLVLINPEISAASASIDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RP ++++ RD G + L AR QHE DHL G+LF +R+TD+
Sbjct: 122 LSIPGVYLDVVRPTAIELSFRDEMGRPRKMKADGLMARCIQHEMDHLNGVLFVDRVTDEA 181
>gi|425459316|ref|ZP_18838802.1| Peptide deformylase [Microcystis aeruginosa PCC 9808]
gi|389822994|emb|CCI29164.1| Peptide deformylase [Microcystis aeruginosa PCC 9808]
Length = 191
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 84/129 (65%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY ++GIGL+APQV +N QL+V + ++ E ++L+NP++ YS ++ EEGC
Sbjct: 48 MLQTMYSSNGIGLAAPQVAVNKQLIVIDCEPDKPENTPLILINPQIIGYSRELCKAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + DV RP+++++ +D G + + L ARV QHE DHL G++F +R+ +D+
Sbjct: 108 LSIPDVFLDVIRPQAIEVSYKDEQGKPRKLQANGLLARVIQHEMDHLNGVMFVDRVDNDL 167
Query: 121 LDSIREQLE 129
++ E+L+
Sbjct: 168 --ALNEELK 174
>gi|260434658|ref|ZP_05788628.1| peptide deformylase [Synechococcus sp. WH 8109]
gi|260412532|gb|EEX05828.1| peptide deformylase [Synechococcus sp. WH 8109]
Length = 201
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVGI+ QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYTAKGIGLAAPQVGIHQQLLVIDLDLENAATPPLVLINPEITAASAGLDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RP ++++ RD G + L AR QHE DHL G+LF +R+TD+
Sbjct: 122 LSIPGVYLDVVRPTAIELSFRDEMGRPRKMKADGLMARCIQHEMDHLNGVLFVDRVTDE- 180
Query: 121 LDSIREQLE 129
D ++++L+
Sbjct: 181 -DGLQKELK 188
>gi|425449070|ref|ZP_18828913.1| Peptide deformylase [Microcystis aeruginosa PCC 7941]
gi|440752961|ref|ZP_20932164.1| peptide deformylase [Microcystis aeruginosa TAIHU98]
gi|389764905|emb|CCI09070.1| Peptide deformylase [Microcystis aeruginosa PCC 7941]
gi|440177454|gb|ELP56727.1| peptide deformylase [Microcystis aeruginosa TAIHU98]
Length = 191
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 84/129 (65%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY ++GIGL+APQV +N QL+V + ++ E ++L+NP++ YS ++ EEGC
Sbjct: 48 MLQTMYSSNGIGLAAPQVAVNKQLIVIDCEHDKPENPPLILINPQIIGYSRELCKAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + DV RP+++++ +D G + + L ARV QHE DHL G++F +R+ +D+
Sbjct: 108 LSIPDVFLDVIRPQAIEVSYKDEQGKPRKLQANGLLARVIQHEMDHLNGVMFVDRVDNDL 167
Query: 121 LDSIREQLE 129
++ E+L+
Sbjct: 168 --ALNEELK 174
>gi|406707254|ref|YP_006757606.1| peptide deformylase [alpha proteobacterium HIMB59]
gi|406653030|gb|AFS48429.1| peptide deformylase [alpha proteobacterium HIMB59]
Length = 170
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 78/117 (66%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M++VMY+ +G+GL+APQVG+++++ + + E I ++NP++ + ++PYEEGC
Sbjct: 33 MYEVMYEANGVGLAAPQVGLDMRIFIVDAAAREEEKTPITMINPKLISIEDDVVPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LSFP A+++RP+ +KI+ D N + +S +R+ QHE DHL GILF + ++
Sbjct: 93 LSFPEHFAEIDRPDKLKIEYIDENNQKKILSTDGFTSRIIQHELDHLNGILFVDHLS 149
>gi|166364192|ref|YP_001656465.1| peptide deformylase [Microcystis aeruginosa NIES-843]
gi|425441814|ref|ZP_18822081.1| Peptide deformylase [Microcystis aeruginosa PCC 9717]
gi|443669310|ref|ZP_21134540.1| peptide deformylase [Microcystis aeruginosa DIANCHI905]
gi|159030946|emb|CAO88636.1| def [Microcystis aeruginosa PCC 7806]
gi|166086565|dbj|BAG01273.1| polypeptide deformylase [Microcystis aeruginosa NIES-843]
gi|389717379|emb|CCH98524.1| Peptide deformylase [Microcystis aeruginosa PCC 9717]
gi|443330403|gb|ELS45121.1| peptide deformylase [Microcystis aeruginosa DIANCHI905]
Length = 191
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 84/129 (65%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY ++GIGL+APQV +N QL+V + ++ E ++L+NP++ YS ++ EEGC
Sbjct: 48 MLQTMYSSNGIGLAAPQVAVNKQLIVIDCEHDKPENPPLILINPQIIGYSRELCKAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + DV RP+++++ +D G + + L ARV QHE DHL G++F +R+ +D+
Sbjct: 108 LSIPDVFLDVIRPQAIEVSYKDEQGKPRKLQANGLLARVIQHEMDHLNGVMFVDRVDNDL 167
Query: 121 LDSIREQLE 129
++ E+L+
Sbjct: 168 --ALNEELK 174
>gi|390440823|ref|ZP_10229023.1| Peptide deformylase [Microcystis sp. T1-4]
gi|389835869|emb|CCI33149.1| Peptide deformylase [Microcystis sp. T1-4]
Length = 191
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 84/129 (65%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY ++GIGL+APQV +N QL+V + ++ E ++L+NP++ YS ++ EEGC
Sbjct: 48 MLQTMYSSNGIGLAAPQVAVNKQLIVIDCEPDKPENPPLILINPQIIGYSRELCKAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + DV RP+++++ +D G + + L ARV QHE DHL G++F +R+ +D+
Sbjct: 108 LSIPDVFLDVIRPQAIEVSYKDEQGKPRKLQANGLLARVIQHEMDHLNGVMFVDRVDNDL 167
Query: 121 LDSIREQLE 129
++ E+L+
Sbjct: 168 --ALNEELK 174
>gi|425436140|ref|ZP_18816579.1| Peptide deformylase [Microcystis aeruginosa PCC 9432]
gi|389679198|emb|CCH92002.1| Peptide deformylase [Microcystis aeruginosa PCC 9432]
Length = 191
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 83/129 (64%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +GIGL+APQV +N QL+V + ++ E ++L+NP++ YS ++ EEGC
Sbjct: 48 MLQTMYSANGIGLAAPQVAVNKQLIVIDCEPDKPENTPLILINPQIIGYSRELCKAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + DV RP+++++ +D G + + L ARV QHE DHL G++F +R+ +D+
Sbjct: 108 LSIPDVFLDVIRPQAIEVSYKDEQGKPRKLQANGLLARVIQHEMDHLNGVMFVDRVDNDL 167
Query: 121 LDSIREQLE 129
++ E+L+
Sbjct: 168 --ALNEELK 174
>gi|425467093|ref|ZP_18846377.1| Peptide deformylase [Microcystis aeruginosa PCC 9809]
gi|389830217|emb|CCI27965.1| Peptide deformylase [Microcystis aeruginosa PCC 9809]
Length = 191
Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 83/129 (64%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY ++GIGL+APQV +N QL+V + ++ E ++L+NP++ YS ++ EEGC
Sbjct: 48 MLQTMYSSNGIGLAAPQVAVNKQLIVIDCEHDKPENPPLILINPQIIGYSRELCKAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + DV RP+++++ +D G + L ARV QHE DHL G++F +R+ +D+
Sbjct: 108 LSIPDVFLDVIRPQAIEVSYKDEQGKPRKLQADGLLARVIQHEMDHLNGVMFVDRVDNDL 167
Query: 121 LDSIREQLE 129
++ E+L+
Sbjct: 168 --ALNEELK 174
>gi|87308719|ref|ZP_01090858.1| peptide deformylase [Blastopirellula marina DSM 3645]
gi|87288430|gb|EAQ80325.1| peptide deformylase [Blastopirellula marina DSM 3645]
Length = 194
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 80/129 (62%), Gaps = 1/129 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF++MY+ GIGL+A QV + ++L V N G +GEGEE+V +NP +++ EEGC
Sbjct: 34 MFELMYENRGIGLAANQVDLPIRLFVANLSGTKGEGEELVFINPVISRPKGNE-EEEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + V+RP ++ DA ++ G FS + + ARV QHE DHL GI+FF+RM
Sbjct: 93 LSLPQVFGPVKRPAEIQFDAYNLQGELFSQRIDGMLARVVQHETDHLDGIMFFDRMQPSA 152
Query: 121 LDSIREQLE 129
+ I +E
Sbjct: 153 IQEIAYDIE 161
>gi|33860628|ref|NP_892189.1| peptide deformylase [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
gi|39930841|sp|Q7V3K7.1|DEF_PROMP RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|33633570|emb|CAE18527.1| putative formylmethionine deformylase [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
Length = 201
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 70/117 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQ+GI +L+V + E E ++L+NP + Y + YEEGC
Sbjct: 62 MLQSMYAAKGIGLAAPQIGIKKELLVIDVNFEDAAAEPLILINPEITDYGTTLNSYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PG++ +V RP ++K+ RD G + L AR QHE DHL G+LF +R+T
Sbjct: 122 LSIPGVYLNVVRPSTIKLRFRDEMGRPRKMKADGLLARCIQHEMDHLNGVLFVDRVT 178
>gi|422305085|ref|ZP_16392422.1| Peptide deformylase [Microcystis aeruginosa PCC 9806]
gi|389789642|emb|CCI14371.1| Peptide deformylase [Microcystis aeruginosa PCC 9806]
Length = 191
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 83/129 (64%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +GIGL+APQV +N QL+V + ++ E ++L+NP++ YS ++ EEGC
Sbjct: 48 MLQTMYSANGIGLAAPQVAVNKQLIVIDCEPDKPENPPLILINPQIIGYSRELCKAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + DV RP+++++ +D G + + L ARV QHE DHL G++F +R+ +D+
Sbjct: 108 LSIPDVFLDVIRPQAIEVSYKDEQGKPRKLQANGLLARVIQHEMDHLNGVMFVDRVDNDL 167
Query: 121 LDSIREQLE 129
++ E+L+
Sbjct: 168 --ALNEELK 174
>gi|78213784|ref|YP_382563.1| peptide deformylase [Synechococcus sp. CC9605]
gi|123756848|sp|Q3AHC4.1|DEF_SYNSC RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|78198243|gb|ABB36008.1| Formylmethionine deformylase [Synechococcus sp. CC9605]
Length = 201
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVGI+ QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYTAKGIGLAAPQVGIHQQLLVIDLDLENAATPPLVLINPEITAASAGLDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RP ++++ RD G + L AR QHE DHL G+LF +R+TD
Sbjct: 122 LSIPGVYLDVVRPTAIELSFRDEMGRPRKMKADGLMARCIQHEMDHLNGVLFVDRVTDQ- 180
Query: 121 LDSIREQLE 129
D ++++L+
Sbjct: 181 -DGLQKELK 188
>gi|428309242|ref|YP_007120219.1| peptide deformylase [Microcoleus sp. PCC 7113]
gi|428250854|gb|AFZ16813.1| peptide deformylase [Microcoleus sp. PCC 7113]
Length = 187
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 76/118 (64%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGI+ Q++V + + + + +VL+NP + ++ +K+ +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGIHKQIIVIDCEPDNPDNKPLVLINPTIKRFGSKLCDAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS P ++ DV RPE V++ +D NG ++ L AR QHE DHL G++F +R+ +
Sbjct: 108 LSIPNVYLDVMRPEEVEVAYKDENGRPQTLKADGLLARAIQHEMDHLNGVMFVDRVEN 165
>gi|298491536|ref|YP_003721713.1| peptide deformylase ['Nostoc azollae' 0708]
gi|298233454|gb|ADI64590.1| peptide deformylase ['Nostoc azollae' 0708]
Length = 187
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 76/120 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGIN QL+V + ++ E +VL+NP + + S+++ EEGC
Sbjct: 48 MLQTMYSEDGIGLAAPQVGINKQLIVIDCEPDKPEAPALVLINPVIKQVSSELCVAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P ++ DV+RP+ V+I +D G ++ DL R HE DHL G+LF +R+ + +
Sbjct: 108 LSIPKVYLDVKRPQVVEIAYKDEYGRPKTLKAGDLLGRCILHEMDHLNGVLFVDRVENSL 167
>gi|113955292|ref|YP_731667.1| peptide deformylase [Synechococcus sp. CC9311]
gi|122945537|sp|Q0I7A5.1|DEF_SYNS3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|113882643|gb|ABI47601.1| peptide deformylase [Synechococcus sp. CC9311]
Length = 202
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 73/118 (61%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVG++ QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYTASGIGLAAPQVGVHQQLLVIDLDFETPSTPPLVLINPEITTCSASVDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS PG++ DV RP ++++ RD G ++ L AR QHE DHL+G+LF +R+TD
Sbjct: 122 LSIPGVYLDVVRPTAIQLSFRDEMGRPRTMKADGLMARCIQHEMDHLRGVLFVDRVTD 179
>gi|332709623|ref|ZP_08429583.1| peptide deformylase [Moorea producens 3L]
gi|332351656|gb|EGJ31236.1| peptide deformylase [Moorea producens 3L]
Length = 187
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 76/118 (64%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGIN Q++V + + + +VL+NP + + + +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGINKQMIVVDCEPNNQDNQPLVLINPEIKSFGSTPCDGQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS PG++ DV RP+ +++ +D NG ++ + L +RV QHE DHL+G++F +R+ +
Sbjct: 108 LSIPGVYLDVTRPDEIEVAYKDQNGRPRTLKANGLLSRVIQHEIDHLKGVMFVDRVQN 165
>gi|425469789|ref|ZP_18848696.1| Peptide deformylase [Microcystis aeruginosa PCC 9701]
gi|389880332|emb|CCI38903.1| Peptide deformylase [Microcystis aeruginosa PCC 9701]
Length = 191
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 84/129 (65%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY ++GIGL+APQV +N QL+V + ++ E ++L+NP++ YS ++ EEGC
Sbjct: 48 MLQTMYSSNGIGLAAPQVAVNKQLIVIDCEPDKPENPPLILINPQIIGYSPELCKAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + DV RP+++++ +D G + + L ARV QHE DHL G++F +R+ +D+
Sbjct: 108 LSIPDVFLDVIRPQALEVSYKDEQGKPRKLQANGLLARVIQHEMDHLNGVMFVDRVDNDL 167
Query: 121 LDSIREQLE 129
++ E+L+
Sbjct: 168 --ALNEELK 174
>gi|300868003|ref|ZP_07112642.1| peptide deformylase [Oscillatoria sp. PCC 6506]
gi|300334024|emb|CBN57820.1| peptide deformylase [Oscillatoria sp. PCC 6506]
Length = 186
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 78/120 (65%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +GIGL+APQV + Q++V + + +VL+NP + KYS ++ ++EGC
Sbjct: 48 MLQTMYSAEGIGLAAPQVAVQKQVIVVDCEPDNAANPPLVLINPSIKKYSGEVCVFQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ +V+RPE++++ RD G ++ ++L +R QHE DHL G+LF +R+ + +
Sbjct: 108 LSIPGVYLEVKRPEAIEVFYRDEYGRPQTLKATELLSRAIQHEMDHLNGVLFVDRVENKL 167
>gi|434394090|ref|YP_007129037.1| peptide deformylase [Gloeocapsa sp. PCC 7428]
gi|428265931|gb|AFZ31877.1| peptide deformylase [Gloeocapsa sp. PCC 7428]
Length = 187
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 76/120 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQV + Q++V + + +VLVNP + ++S ++ +EGC
Sbjct: 48 MLQTMYTADGIGLAAPQVAVQKQVIVIDCEPDNPANPPLVLVNPVIKQFSPELCVMQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RP+ V+I +D NG ++ ++L AR QHE DHL G+LF +R+ + +
Sbjct: 108 LSIPGVYLDVVRPQVVEISYKDENGRPRTLKANELLARCIQHEIDHLNGVLFVDRVENKI 167
>gi|425446284|ref|ZP_18826292.1| Peptide deformylase [Microcystis aeruginosa PCC 9443]
gi|389733546|emb|CCI02697.1| Peptide deformylase [Microcystis aeruginosa PCC 9443]
Length = 191
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +GIGL+APQV +N QL+V + ++ E ++L+NP++ YS ++ EEGC
Sbjct: 48 MLQTMYSANGIGLAAPQVAVNKQLIVIDCETDKPENPPLILINPQIIGYSRELCKAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + DV RP+++++ +D G + + L AR QHE DHL G++F +R+ +D+
Sbjct: 108 LSIPDVFLDVIRPQAIEVSYKDEQGKPRKLQANGLLARAIQHEMDHLNGVMFVDRVDNDL 167
Query: 121 LDSIREQLE 129
++ E+L+
Sbjct: 168 --ALNEELK 174
>gi|33239533|ref|NP_874475.1| peptide deformylase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
gi|39930846|sp|Q7VED2.1|DEF_PROMA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|33237058|gb|AAP99127.1| N-formylmethionyl-tRNA deformylase [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 203
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 72/119 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQ+G QL+V + E I+L+NP + ++S + YEEGC
Sbjct: 62 MLHSMYAAKGIGLAAPQIGSQQQLLVIDLDIENSATPPIILINPEITEFSATIDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
LS PG++ DV RP S+K++ RD G ++ L AR QHE DHL G+LF +R ++
Sbjct: 122 LSIPGVYLDVIRPSSIKVNFRDEMGRPKKINADGLLARCIQHEMDHLNGVLFVDRAINE 180
>gi|406834652|ref|ZP_11094246.1| peptide deformylase [Schlesneria paludicola DSM 18645]
Length = 199
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 78/130 (60%), Gaps = 6/130 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEG-EEIVLVNPRVNKYSNKMIPYEEG 59
MF +MY GIGL+A QVG+ +L V N + E EEIV +NP + K EEG
Sbjct: 32 MFSLMYTAKGIGLAANQVGLPYRLFVLNLTADPEEKDEEIVFINPEILKRKG-TTEGEEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLSFPG++ V+R V I+A D+NG SL DL AR QHE DHL GILF +RMT
Sbjct: 91 CLSFPGMYGPVKRAAKVVIEAFDLNGECIEYSLDDLAARAVQHETDHLDGILFTDRMT-- 148
Query: 120 VLDSIREQLE 129
++ R +LE
Sbjct: 149 --ETARRELE 156
>gi|123965312|ref|YP_001010393.1| peptide deformylase [Prochlorococcus marinus str. MIT 9515]
gi|158512726|sp|A2BU25.1|DEF_PROM5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|123199678|gb|ABM71286.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
MIT 9515]
Length = 203
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 73/117 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVGI+ +L+V + E E ++L+NP + + N + YEEGC
Sbjct: 62 MLKSMYSAKGIGLAAPQVGISKELLVIDINFEDSAAEPLILINPEITAFGNTLNSYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PG++ +V RP ++K+ D G ++ L AR QHE DHL+G+LF +R+T
Sbjct: 122 LSIPGVYLNVVRPSTIKLRFSDEMGRPRKMNADGLLARCIQHEVDHLRGVLFVDRVT 178
>gi|428209402|ref|YP_007093755.1| peptide deformylase [Chroococcidiopsis thermalis PCC 7203]
gi|428011323|gb|AFY89886.1| peptide deformylase [Chroococcidiopsis thermalis PCC 7203]
Length = 187
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 76/120 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQV ++ Q++V + + ++L+NP + + S+ + EEGC
Sbjct: 48 MLQSMYSADGIGLAAPQVAVSKQIIVIDCEPDNAANPPLILINPTIKRTSSDICVAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+ +V RP++V+I +D G S+ +DL AR QHE DHL GI+F +R+ + +
Sbjct: 108 LSIPGIYLNVTRPQAVEIAYKDEYGHPRSLQATDLLARCIQHEIDHLNGIVFVDRVENKL 167
>gi|425457242|ref|ZP_18836948.1| Peptide deformylase [Microcystis aeruginosa PCC 9807]
gi|389801479|emb|CCI19368.1| Peptide deformylase [Microcystis aeruginosa PCC 9807]
Length = 191
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +GIGL+APQV +N QL+V + ++ E ++L+NP++ YS ++ EEGC
Sbjct: 48 MLQTMYSANGIGLAAPQVAVNKQLIVIDCEPDKPENTPLILINPQIIGYSRELCKAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + DV RP+++++ +D G + + L AR QHE DHL G++F +R+ +D+
Sbjct: 108 LSIPDVFLDVIRPQAIEVSYKDEQGKPRKLQANGLLARAIQHEMDHLNGVMFVDRVDNDL 167
Query: 121 LDSIREQLE 129
++ E+L+
Sbjct: 168 --ALNEELK 174
>gi|16330073|ref|NP_440801.1| peptide deformylase [Synechocystis sp. PCC 6803]
gi|383321816|ref|YP_005382669.1| polypeptide deformylase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383324985|ref|YP_005385838.1| polypeptide deformylase [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383490869|ref|YP_005408545.1| polypeptide deformylase [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384436136|ref|YP_005650860.1| polypeptide deformylase [Synechocystis sp. PCC 6803]
gi|451814232|ref|YP_007450684.1| polypeptide deformylase [Synechocystis sp. PCC 6803]
gi|2499924|sp|P73441.1|DEF_SYNY3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|1652560|dbj|BAA17481.1| polypeptide deformylase [Synechocystis sp. PCC 6803]
gi|339273168|dbj|BAK49655.1| polypeptide deformylase [Synechocystis sp. PCC 6803]
gi|359271135|dbj|BAL28654.1| polypeptide deformylase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359274305|dbj|BAL31823.1| polypeptide deformylase [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359277475|dbj|BAL34992.1| polypeptide deformylase [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407957971|dbj|BAM51211.1| peptide deformylase [Synechocystis sp. PCC 6803]
gi|451780201|gb|AGF51170.1| polypeptide deformylase [Synechocystis sp. PCC 6803]
Length = 187
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 76/116 (65%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +GIGL+APQVGIN QL+V + ++ + ++++NP++ + S ++ EEGC
Sbjct: 48 MLQTMYSANGIGLAAPQVGINKQLLVVDCEQDKPDEPPLIMINPQITRTSEELCVVEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LS P ++ DV RP ++++ +D +G ++L ARV QHE DHL G++F +R+
Sbjct: 108 LSVPNVYMDVTRPRAIEVTYKDEHGRPQKRLFAELTARVIQHEMDHLNGVMFVDRV 163
>gi|428768631|ref|YP_007160421.1| peptide deformylase [Cyanobacterium aponinum PCC 10605]
gi|428682910|gb|AFZ52377.1| peptide deformylase [Cyanobacterium aponinum PCC 10605]
Length = 186
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 76/120 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +GIGL+APQ+G++ Q++V + + + +VL+NP + K+S + EEGC
Sbjct: 47 MLQTMYTENGIGLAAPQIGVHKQMIVVDCQPDNPASQPMVLINPEITKFSKDLCVAEEGC 106
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + +V RP ++++ +D +G + + S L +RV QHE DHL GILF +R+ + +
Sbjct: 107 LSIPNVFLEVIRPRNIQLTYKDESGKKHKIKASGLLSRVIQHEMDHLHGILFVDRVKNSI 166
>gi|352096053|ref|ZP_08957000.1| Peptide deformylase [Synechococcus sp. WH 8016]
gi|351677409|gb|EHA60558.1| Peptide deformylase [Synechococcus sp. WH 8016]
Length = 182
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 73/118 (61%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVG++ QL+V + E +VL+NP + S + YEEGC
Sbjct: 42 MLRSMYTARGIGLAAPQVGVHQQLLVIDLDFETPSTPPLVLINPEITTCSASVDTYEEGC 101
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS PG++ DV RP ++++ RD G ++ L AR QHE DHL+G+LF +R+TD
Sbjct: 102 LSIPGVYLDVVRPTAIQLSFRDEMGRPRTMKADGLMARCIQHEMDHLRGVLFVDRVTD 159
>gi|221054422|ref|XP_002258350.1| formylmethionine deformylase [Plasmodium knowlesi strain H]
gi|193808419|emb|CAQ39122.1| formylmethionine deformylase, putative [Plasmodium knowlesi strain
H]
Length = 242
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 82/129 (63%), Gaps = 1/129 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGE-EIVLVNPRVNKYSNKMIPYEEG 59
MF+VMY++ G+GL+APQV I+++++V+N + E+ + E E V +NP + + S EG
Sbjct: 97 MFNVMYESKGMGLAAPQVNISMRIIVWNALYEKKKKENERVFINPSIVEPSLIRSKLVEG 156
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLSFP I V+RP V I D++G + L + AR+FQHE+DHL GILF +R +
Sbjct: 157 CLSFPDIEGKVDRPRVVSISYYDLDGNKHLKILKGIHARIFQHEYDHLDGILFIDRFSQS 216
Query: 120 VLDSIREQL 128
+R +L
Sbjct: 217 EKHKVRAKL 225
>gi|302338169|ref|YP_003803375.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293]
gi|301635354|gb|ADK80781.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293]
Length = 161
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 76/118 (64%), Gaps = 4/118 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M M++ DG+GL+APQ+G+ +L V + G+ V +NP + S + + YEEGC
Sbjct: 32 MIVTMHEDDGVGLAAPQIGVLKRLFVCHVRGDVPR----VFINPEIIGTSQEQVRYEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS PGI+ADV RPES+++ A D NG F ++ L ARV QHE DHL+G+LF + + +
Sbjct: 88 LSIPGIYADVLRPESIQVQAIDENGKAFKLAAEGLLARVIQHEMDHLKGVLFIDHLEE 145
>gi|317967982|ref|ZP_07969372.1| peptide deformylase [Synechococcus sp. CB0205]
Length = 200
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 69/119 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQ+G+N QL+V + E +VL+NP + + YEEGC
Sbjct: 61 MLVSMYAAKGIGLAAPQIGVNQQLLVIDLELEDPSSPPLVLINPEITSVGGGLCTYEEGC 120
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
LS PG++ DV RP V + RD G + L AR QHE DHL G+LF +R+TD+
Sbjct: 121 LSIPGVYLDVVRPSVVDVSYRDAFGRPKRMKADGLMARCIQHEMDHLNGVLFVDRVTDE 179
>gi|428305963|ref|YP_007142788.1| peptide deformylase [Crinalium epipsammum PCC 9333]
gi|428247498|gb|AFZ13278.1| peptide deformylase [Crinalium epipsammum PCC 9333]
Length = 187
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 81/129 (62%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQV +N QL+V + + +VL+NP + + S ++ +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVAVNKQLIVIDCEPDNPAAPPLVLINPTIKRASREVCADQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RPE V++ +D G ++ + L +R QHE DHL G+LF +R+ D+
Sbjct: 108 LSIPGVYMDVIRPEMVEVSYKDEQGRPKTIKATGLLSRAIQHEMDHLNGVLFVDRV-DNA 166
Query: 121 LDSIREQLE 129
L ++ E+L+
Sbjct: 167 L-ALTEELK 174
>gi|149176747|ref|ZP_01855358.1| peptide deformylase [Planctomyces maris DSM 8797]
gi|148844388|gb|EDL58740.1| peptide deformylase [Planctomyces maris DSM 8797]
Length = 196
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 75/119 (63%), Gaps = 2/119 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
MFD+MY+ GIGL+A QV + +L V N + E EE V +NP + K EEG
Sbjct: 35 MFDLMYEARGIGLAANQVALPYRLFVINLTSDPNEPEEEFVFINPEITKRKGTA-EGEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
CLS P ++ DV+R E + ++A D+NG F ++L DL AR QHE DH++GI+F +RM +
Sbjct: 94 CLSLPQVYGDVKRSEEITVEAYDLNGQLFEITLDDLAARAVQHEHDHIEGIMFPDRMVE 152
>gi|254431727|ref|ZP_05045430.1| peptide deformylase [Cyanobium sp. PCC 7001]
gi|197626180|gb|EDY38739.1| peptide deformylase [Cyanobium sp. PCC 7001]
Length = 183
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVG++ QL+V + + +VL+NP + + + YEEGC
Sbjct: 44 MLRSMYTAKGIGLAAPQVGVHKQLLVIDLDPDNPATPPMVLINPEIRSFGGSLDTYEEGC 103
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ +V RP +V++ RD G + L AR QHE DHL G+LF +R+TD++
Sbjct: 104 LSIPGVYLNVVRPTAVEVSFRDEMGRPQKLRTDGLLARCIQHEMDHLNGVLFVDRVTDEI 163
Query: 121 LDSIREQLE 129
S+ E+L+
Sbjct: 164 --SLNEELK 170
>gi|406955167|gb|EKD83746.1| peptide deformylase [uncultured bacterium]
Length = 175
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 84/130 (64%), Gaps = 6/130 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ M + G+GL+APQVG+N++L + + VG+ + +VL+NPR+ K S K +EGC
Sbjct: 34 MFETMNEAKGVGLAAPQVGVNLRLAIID-VGD----DPLVLINPRIIKSSGKET-CDEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPG+ VER + V +A DI+G+ + + L AR QHE DHL G+LF +R++
Sbjct: 88 LSFPGLTEKVERAKKVVAEATDIDGSLYEIEAEGLLARAIQHELDHLDGVLFIDRISKAR 147
Query: 121 LDSIREQLEI 130
I+ +LE+
Sbjct: 148 KLQIKHELEM 157
>gi|434405601|ref|YP_007148486.1| peptide deformylase [Cylindrospermum stagnale PCC 7417]
gi|428259856|gb|AFZ25806.1| peptide deformylase [Cylindrospermum stagnale PCC 7417]
Length = 187
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 75/120 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGI+ Q++V + + +VL+NP V + S + +EGC
Sbjct: 48 MLQTMYSQDGIGLAAPQVGIHKQIIVIDCEPDNAANPPLVLINPTVKQVSRDICVAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV+RP+ V+I +D +G + SDL R QHE DHL G++F +R+ + +
Sbjct: 108 LSIPGVYLDVKRPQVVEIAYKDESGRPQILKASDLLGRCIQHEMDHLNGVVFVDRVENSL 167
>gi|340757101|ref|ZP_08693704.1| polypeptide deformylase [Fusobacterium varium ATCC 27725]
gi|251834368|gb|EES62931.1| polypeptide deformylase [Fusobacterium varium ATCC 27725]
Length = 173
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 76/118 (64%), Gaps = 4/118 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI-VLVNPRVNKYSNKMIPYEEG 59
M + MY G+GL+APQVGI+ +++V + GE GEE+ ++NP + + + I +EEG
Sbjct: 34 MVETMYDKKGVGLAAPQVGISKRMLVLDWTGE---GEELRKVINPVITPLTEEKIDWEEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLS PGI+ VER +K+D + G + + L PA V QHEFDHL+ +LF +R++
Sbjct: 91 CLSIPGIYKKVERVAKIKVDYLNEKGEKITEELEGFPAIVMQHEFDHLEAVLFVDRIS 148
>gi|427702781|ref|YP_007046003.1| peptide deformylase [Cyanobium gracile PCC 6307]
gi|427345949|gb|AFY28662.1| peptide deformylase [Cyanobium gracile PCC 6307]
Length = 201
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVG++ QL+V + E +VL+NP + YEEGC
Sbjct: 62 MLRSMYTAKGIGLAAPQVGVHRQLLVIDLDLEEAATPPLVLINPEITAAGASFNTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RP V++ RD G + L AR QHE DHL G+LF +R+TD++
Sbjct: 122 LSIPGVYLDVVRPSVVEVSFRDETGRPRRLKADGLLARCIQHEMDHLNGVLFVDRVTDEL 181
Query: 121 LDSIREQLE 129
S+ E L+
Sbjct: 182 --SLNEGLQ 188
>gi|186684172|ref|YP_001867368.1| peptide deformylase [Nostoc punctiforme PCC 73102]
gi|186466624|gb|ACC82425.1| peptide deformylase [Nostoc punctiforme PCC 73102]
Length = 187
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 74/120 (61%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGI+ QL+V + E +VL+NP + + S + EEGC
Sbjct: 48 MLQTMYSKDGIGLAAPQVGIHKQLIVIDLEPENAANPPLVLINPTIKQVSRDISVAEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P ++ DV+RPE V+I +D G ++ +DL R QHE DHL G++F +R+ + +
Sbjct: 108 LSIPNVYLDVKRPEVVEIAYKDEYGRPRTLKANDLLGRCIQHEMDHLNGVVFVDRVENSL 167
>gi|86604850|ref|YP_473613.1| peptide deformylase [Synechococcus sp. JA-3-3Ab]
gi|86553392|gb|ABC98350.1| peptide deformylase [Synechococcus sp. JA-3-3Ab]
Length = 198
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 77/121 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGI +L+V + ++ E +VL+NP + +Y +++ +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGIPKRLIVVDLYPDKPEVPPLVLINPEIREYLGEVVAGQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG+ +V RP+ V + +D G ++ DL ARV QHE DHL G+LF + + +++
Sbjct: 108 LSIPGVFCEVMRPQGVVVSFKDETGRPRTLQADDLLARVIQHEIDHLNGVLFVDHVENEL 167
Query: 121 L 121
L
Sbjct: 168 L 168
>gi|339500918|ref|YP_004698953.1| peptide deformylase [Spirochaeta caldaria DSM 7334]
gi|338835267|gb|AEJ20445.1| Peptide deformylase [Spirochaeta caldaria DSM 7334]
Length = 161
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 76/118 (64%), Gaps = 4/118 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + M++ GIGL+ PQVG+ ++ V G+ V +NP + S++++ YEEGC
Sbjct: 32 MIETMHRGRGIGLAGPQVGLLQRIFVVQVDGDSPR----VFINPTIIGTSSEIVQYEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS PG++ADV RPE V I A + G F++ L ARV QHE+DHL+G+LF +R+T+
Sbjct: 88 LSIPGLYADVTRPEKVTIQAWNERGRPFTLDADGLLARVIQHEYDHLEGVLFIDRLTE 145
>gi|116071395|ref|ZP_01468664.1| peptide deformylase [Synechococcus sp. BL107]
gi|116066800|gb|EAU72557.1| peptide deformylase [Synechococcus sp. BL107]
Length = 201
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQV + QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYTAKGIGLAAPQVAVYQQLLVIDLDLENAATPPLVLINPEITAASAGLDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RP ++++ RD G + L AR QHE DHL G+LF +R+TD
Sbjct: 122 LSIPGVYLDVVRPTAIELSYRDEMGRPRKMKADGLMARCIQHEMDHLNGVLFVDRVTDQ- 180
Query: 121 LDSIREQLE 129
D ++++L+
Sbjct: 181 -DGLQKELK 188
>gi|414077496|ref|YP_006996814.1| peptide deformylase [Anabaena sp. 90]
gi|413970912|gb|AFW95001.1| peptide deformylase [Anabaena sp. 90]
Length = 187
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 75/120 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +DGIGL+APQVGIN QL+V + + + +VL+NP + + S+K+ +EGC
Sbjct: 48 MLQTMYSSDGIGLAAPQVGINKQLIVIDCEPDNPDHPPLVLINPTIKQVSSKLSVAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P ++ DV+RPE V I +D G ++ DL R HE DHL G++F +R+ + +
Sbjct: 108 LSIPNVYLDVKRPEVVTIAYKDEYGRPQTLKADDLLGRCILHELDHLNGVVFVDRVENSL 167
>gi|255261213|ref|ZP_05340555.1| peptide deformylase [Thalassiobium sp. R2A62]
gi|255103548|gb|EET46222.1| peptide deformylase [Thalassiobium sp. R2A62]
Length = 173
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 76/129 (58%), Gaps = 6/129 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGE-GEEIVLVNPRVNKYSNKMIPYEEG 59
M D MY GIGL+APQ+G+ ++ V + V E GE + +VLVNP + S++M Y+EG
Sbjct: 35 MLDTMYDAPGIGLAAPQIGVMSRVFVMDCVKEEGEEPKPMVLVNPEITWTSDEMNTYDEG 94
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +A+V+RP VK+ +D+ G ++ L A QHE DHL G LF D
Sbjct: 95 CLSIPEQYAEVDRPAEVKVTWQDVEGTQYEAQFDGLWATCVQHEIDHLDGKLFI-----D 149
Query: 120 VLDSIREQL 128
L ++ Q+
Sbjct: 150 YLKPLKRQM 158
>gi|427718637|ref|YP_007066631.1| peptide deformylase [Calothrix sp. PCC 7507]
gi|427351073|gb|AFY33797.1| peptide deformylase [Calothrix sp. PCC 7507]
Length = 187
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 77/120 (64%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG++ QL+V + + +VL+NP + + S ++ +EGC
Sbjct: 48 MLQTMYSKDGIGLAAPQVGVHKQLIVIDLEPDNPANPPLVLINPTIKQVSREVCVAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV+RP+ V++ +D +G ++ +DL R QHE DHL G++F +R+ + +
Sbjct: 108 LSIPGVYLDVKRPQVVEVAYKDESGRPRTLQANDLLGRCIQHEMDHLNGVVFVDRVDNSL 167
>gi|46581767|ref|YP_012575.1| polypeptide deformylase [Desulfovibrio vulgaris str. Hildenborough]
gi|120601080|ref|YP_965480.1| peptide deformylase [Desulfovibrio vulgaris DP4]
gi|387151882|ref|YP_005700818.1| peptide deformylase [Desulfovibrio vulgaris RCH1]
gi|46451190|gb|AAS97835.1| polypeptide deformylase [Desulfovibrio vulgaris str. Hildenborough]
gi|120561309|gb|ABM27053.1| peptide deformylase [Desulfovibrio vulgaris DP4]
gi|311232326|gb|ADP85180.1| peptide deformylase [Desulfovibrio vulgaris RCH1]
Length = 171
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 70/117 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ DGIGL+APQVG N +L+V + G + +NPR+ ++ + EEGC
Sbjct: 34 MVETMYREDGIGLAAPQVGANCRLIVVDVSGPEKRESLMTFINPRLEPLGDEKVESEEGC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P + A VER E V++ ARD++G + L A QHE DHL G LF +R++
Sbjct: 94 LSVPALRAKVERHERVRLTARDLDGNEVCMDADGLLAICLQHEIDHLGGTLFIDRIS 150
>gi|407784414|ref|ZP_11131563.1| peptide deformylase [Celeribacter baekdonensis B30]
gi|407204116|gb|EKE74097.1| peptide deformylase [Celeribacter baekdonensis B30]
Length = 197
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 75/129 (58%), Gaps = 6/129 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEG 59
M MY+ GIGL+APQVG+ +++V + V E G E +V+VNP V S++ YEEG
Sbjct: 59 MLQTMYEAPGIGLAAPQVGLTKRMLVMDCVKEASGTPEPMVMVNPAVTWSSDEKNVYEEG 118
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS PG +ADVERP+ V++ D+ G L A QHE DHL GILF D
Sbjct: 119 CLSIPGQYADVERPKMVRVSWLDVEGKAHEEEFDALWATCVQHEIDHLDGILFI-----D 173
Query: 120 VLDSIREQL 128
L ++ Q+
Sbjct: 174 YLKPLKRQM 182
>gi|78183988|ref|YP_376423.1| peptide deformylase [Synechococcus sp. CC9902]
gi|123743565|sp|Q3AZU8.1|DEF_SYNS9 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|78168282|gb|ABB25379.1| peptide deformylase [Synechococcus sp. CC9902]
Length = 201
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 69/118 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQV + QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYTAKGIGLAAPQVAVYQQLLVIDLDLENAATPPLVLINPEITAASAGLDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS PG++ DV RP ++++ RD G + L AR QHE DHL G+LF +R+TD
Sbjct: 122 LSIPGVYLDVVRPTAIELSYRDEMGRPRKMKADGLMARCIQHEMDHLNGVLFVDRVTD 179
>gi|358013003|ref|ZP_09144813.1| peptide deformylase [Acinetobacter sp. P8-3-8]
Length = 176
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++QL+V + R + +V +NP+V + + +PYEEGC
Sbjct: 35 MFETMYEAPGIGLAATQVDQHIQLIVIDVSENRDQP--MVFINPKVTPLTEQTLPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ VERP VKI+A D+ G F + +L A QHE DHL G LF + ++
Sbjct: 93 LSVPQIYDKVERPSRVKIEAIDLEGNAFELEADELLAVCIQHEMDHLNGKLFVDYLSPLK 152
Query: 121 LDSIREQLE 129
RE++E
Sbjct: 153 RQRAREKVE 161
>gi|160901540|ref|YP_001567121.1| peptide deformylase [Petrotoga mobilis SJ95]
gi|160359184|gb|ABX30798.1| peptide deformylase [Petrotoga mobilis SJ95]
Length = 178
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 77/116 (66%), Gaps = 1/116 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY DG+GL+APQVGI+++ + + E +G+++V +NP + ++ + + +EEGC
Sbjct: 32 MFSTMYLYDGVGLAAPQVGISLRFFIMDSREENEKGKKVV-INPEIIEFLGEEVSFEEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LS P I DV RPE V++ +D++G L AR+FQHE DHL+GILF +++
Sbjct: 91 LSIPDIFEDVVRPEGVRVRYQDLSGNVIEEELHGYQARIFQHETDHLEGILFTDKL 146
>gi|104161993|emb|CAJ75702.1| N-formylmethionyl-tRNA deformylase [uncultured Thermotogales
bacterium]
Length = 166
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 78/114 (68%), Gaps = 5/114 (4%)
Query: 4 VMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSF 63
MY DG+GL+APQV ++ ++ V++P G+G +V +NP + S++++ EEGCLS
Sbjct: 38 TMYVEDGVGLAAPQVAVSRRIFVYDP----GDGLRVV-INPEILSKSDEIVKMEEGCLSI 92
Query: 64 PGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
PGI+AD++RP +V+I +D G L++ PAR+ QHE DHL+G+LF + ++
Sbjct: 93 PGIYADIDRPSAVRIHYQDEYGQHHEEDLTEYPARIVQHESDHLEGVLFVDYLS 146
>gi|254409726|ref|ZP_05023507.1| peptide deformylase [Coleofasciculus chthonoplastes PCC 7420]
gi|196183723|gb|EDX78706.1| peptide deformylase [Coleofasciculus chthonoplastes PCC 7420]
Length = 190
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 75/121 (61%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG+N Q++V + + E ++L+NP + ++ + +EGC
Sbjct: 50 MLQTMYSADGIGLAAPQVGVNKQIIVIDCEPDNPENPPLILINPTIKRFGQSICDAQEGC 109
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV+RP V++ +D NG + L +R QHE DHL G++F +R+ + +
Sbjct: 110 LSVPGVYLDVKRPVEVEVAYKDENGRPQRLKADGLLSRAIQHEMDHLTGVMFVDRVENGL 169
Query: 121 L 121
+
Sbjct: 170 V 170
>gi|389844380|ref|YP_006346460.1| peptide deformylase [Mesotoga prima MesG1.Ag.4.2]
gi|387859126|gb|AFK07217.1| peptide deformylase [Mesotoga prima MesG1.Ag.4.2]
Length = 163
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 75/114 (65%), Gaps = 5/114 (4%)
Query: 4 VMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSF 63
MY DG+GL+APQV I+ +L V++P G+G +V VNP + S++ + EEGCLS
Sbjct: 35 TMYVEDGVGLAAPQVAISRRLFVYDP----GDGLRVV-VNPEILFRSDEKVKIEEGCLSI 89
Query: 64 PGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
PGI+ADV RP SV+I +D G L+D PAR+ QHE DHL GILF + ++
Sbjct: 90 PGIYADVVRPASVRIRYQDEYGHYHEDDLTDYPARIVQHETDHLDGILFVDYLS 143
>gi|156097168|ref|XP_001614617.1| formylmethionine deformylase [Plasmodium vivax Sal-1]
gi|148803491|gb|EDL44890.1| formylmethionine deformylase, putative [Plasmodium vivax]
Length = 186
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 81/129 (62%), Gaps = 1/129 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGE-EIVLVNPRVNKYSNKMIPYEEG 59
MF+VMY++ G+GL+APQV I+ +++V+N + E+ + E E V +NP + + S EG
Sbjct: 41 MFNVMYESKGMGLAAPQVNISRRIIVWNALYEKKKKENERVFINPSIVEPSLVRSKLVEG 100
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLSFP I V+RP V I D++G + L + AR+FQHE+DHL G+LF +R +
Sbjct: 101 CLSFPDIEGKVDRPSVVSISYYDLDGNKHLKILKGIHARIFQHEYDHLDGVLFIDRFSQS 160
Query: 120 VLDSIREQL 128
+R +L
Sbjct: 161 ERHKVRAKL 169
>gi|427706263|ref|YP_007048640.1| peptide deformylase [Nostoc sp. PCC 7107]
gi|427358768|gb|AFY41490.1| peptide deformylase [Nostoc sp. PCC 7107]
Length = 187
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 77/120 (64%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +DGIGL+APQVGI+ QL+V + + + +VL+NP + + S ++ +EGC
Sbjct: 48 MLQTMYSSDGIGLAAPQVGIHKQLIVIDCEPDNPDNPPLVLINPTIKQVSQEICVAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P ++ DV+RPE V++ +D G ++ +DL R QHE DHL G++F +R+ + +
Sbjct: 108 LSIPNVYLDVKRPEVVEVAYKDEYGRPQTLKGTDLLGRCIQHEMDHLNGVVFVDRVENSL 167
>gi|428319570|ref|YP_007117452.1| Peptide deformylase [Oscillatoria nigro-viridis PCC 7112]
gi|428243250|gb|AFZ09036.1| Peptide deformylase [Oscillatoria nigro-viridis PCC 7112]
Length = 186
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 75/120 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG++ Q++V + E IVL+NP + S+ + +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGVHKQVIVLDCDPENPATPPIVLINPTIKSSSSDICILQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ +V+RPE +++ RD G ++ +L +R QHE DHL G+LF +R+ + +
Sbjct: 108 LSIPGVYLEVKRPEVIEVSYRDEYGRPQTLIAKELLSRAIQHEMDHLNGVLFVDRVENKL 167
>gi|354594303|ref|ZP_09012342.1| peptide deformylase [Commensalibacter intestini A911]
gi|353671979|gb|EHD13679.1| peptide deformylase [Commensalibacter intestini A911]
Length = 178
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 74/117 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY +GIGL+APQVGI ++ + + + GE E+ +++NP + + S + EGC
Sbjct: 43 MFDTMYDANGIGLAAPQVGIPLRFFIMDLAKKEGEKEQYIILNPEIIEESEECTEDREGC 102
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +++V RPE +K+ D++G + + DL AR QHE DHL GILF + ++
Sbjct: 103 LSVPEQYSEVIRPEKIKVRYMDLDGKQQEMEADDLLARCIQHETDHLDGILFIDHIS 159
>gi|22299219|ref|NP_682466.1| peptide deformylase [Thermosynechococcus elongatus BP-1]
gi|39930888|sp|Q8DIB4.1|DEF_THEEB RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|22295401|dbj|BAC09228.1| polypeptide deformylase [Thermosynechococcus elongatus BP-1]
Length = 188
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGIN Q++V + + E E +V++NP + +S ++ +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGINKQILVIDIHPDDPEAEPLVMINPVIKDFSEELEVCQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ +V RP V++ +D G + L AR QHE DHL G++F +R+ +
Sbjct: 108 LSIPGVYLEVRRPAMVEVSYKDEWGRPQVIMAGGLLARAIQHEIDHLTGVMFVDRVENQA 167
Query: 121 LDSIREQLE 129
L +R +L+
Sbjct: 168 L--LRHELK 174
>gi|334121464|ref|ZP_08495532.1| Peptide deformylase [Microcoleus vaginatus FGP-2]
gi|333454983|gb|EGK83650.1| Peptide deformylase [Microcoleus vaginatus FGP-2]
Length = 186
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 75/120 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG+N Q++V + E +VL+NP + + + +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGVNKQVIVLDCDPENPATPPMVLINPTIKSSGSDICILQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ +V+RPE +++ RD G ++ ++L +R QHE DHL G+LF +R+ + +
Sbjct: 108 LSIPGVYLEVKRPEVIEVSYRDEYGRPQTLIATELLSRAIQHEMDHLNGVLFVDRVENKL 167
>gi|357030902|ref|ZP_09092846.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter morbifer
G707]
gi|356415596|gb|EHH69239.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter morbifer
G707]
Length = 184
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 72/117 (61%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MYK GIGL+APQVG +++ + + E E IVL+NP + S +M EEGC
Sbjct: 48 MFSAMYKAPGIGLAAPQVGHSLRFALVDVAEEDAPREPIVLINPEIVSDSEQMAVREEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+V RPES+++ R++ G SDL A QHE DHL+GILF + ++
Sbjct: 108 LSLPNQYAEVVRPESIRVRYRNLAGDIIEKEASDLLATCIQHEMDHLEGILFVDHLS 164
>gi|318040515|ref|ZP_07972471.1| peptide deformylase [Synechococcus sp. CB0101]
Length = 200
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQ+G +QL+V + E + ++L+NP + + YEEGC
Sbjct: 61 MLVSMYAAKGIGLAAPQIGEPLQLLVIDLEIEDPKSPPLILINPEITSVGGSLCTYEEGC 120
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV RP V + RD G + L AR QHE DHL G+LF +R+TD
Sbjct: 121 LSIPGVYLDVVRPSVVDVSYRDEMGRPKRLKADGLMARCIQHEMDHLNGVLFVDRVTDH- 179
Query: 121 LDSIREQL 128
D +RE L
Sbjct: 180 -DKLREGL 186
>gi|428219333|ref|YP_007103798.1| peptide deformylase [Pseudanabaena sp. PCC 7367]
gi|427991115|gb|AFY71370.1| peptide deformylase [Pseudanabaena sp. PCC 7367]
Length = 188
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 75/120 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGIN Q++V + ++ + E +VL+NP + + N++ +EGC
Sbjct: 49 MLQTMYSEDGIGLAAPQVGINKQIIVVDCEPDKEDAEPLVLINPEIKAFGNQIELGQEGC 108
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + DV+RP S+ + +D G + + L ARV QHE DHL G++F + + + +
Sbjct: 109 LSVPQVFMDVKRPASITVAFKDPEGKPQRLEVDGLLARVIQHEIDHLNGVMFVDHVQNAI 168
>gi|373497635|ref|ZP_09588157.1| peptide deformylase [Fusobacterium sp. 12_1B]
gi|371962775|gb|EHO80352.1| peptide deformylase [Fusobacterium sp. 12_1B]
Length = 173
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 74/117 (63%), Gaps = 2/117 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+APQVGI+ +++V + GE E ++V NP + + + I +EEGC
Sbjct: 34 MTETMYDKKGVGLAAPQVGISKRMLVLDWSGEGAELRKVV--NPVITPLTEEKIDWEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ VER +++D + G + + L PA V QHEFDHL+ +LF +R++
Sbjct: 92 LSIPGIYKKVERVAKIRVDYLNEKGEKITEELEGFPAIVMQHEFDHLEAVLFVDRIS 148
>gi|428773914|ref|YP_007165702.1| peptide deformylase [Cyanobacterium stanieri PCC 7202]
gi|428688193|gb|AFZ48053.1| peptide deformylase [Cyanobacterium stanieri PCC 7202]
Length = 199
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 73/120 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +GIGL+APQVG+N Q++V + + +V++NP + KYS + EEGC
Sbjct: 60 MLQTMYAENGIGLAAPQVGVNKQMIVVDLQPDNETNPPLVMINPVIKKYSKDVCVLEEGC 119
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + DV RP ++++ +++ G + ARV QHE DHL G+LF +R+ +++
Sbjct: 120 LSIPNVFFDVTRPSKIEVEFKNLEGKLQRIKAIGWMARVIQHEMDHLTGVLFVDRIKNNL 179
>gi|320537113|ref|ZP_08037086.1| peptide deformylase [Treponema phagedenis F0421]
gi|320146038|gb|EFW37681.1| peptide deformylase [Treponema phagedenis F0421]
Length = 167
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 76/120 (63%), Gaps = 5/120 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF M DGIGL+APQ+G N+++ V E+ V +NP++ + S K+ YEEGC
Sbjct: 32 MFVTMKIKDGIGLAAPQIGKNIRIFVTGV-----NNEQRVFINPQIIETSEKVCSYEEGC 86
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ V RPE+V + ++I+G R ++ + L ARV QHE DHL G+LF +R+ + +
Sbjct: 87 LSIPQIYEKVVRPETVTVQYQNIDGRRKTLQTTGLLARVIQHENDHLDGVLFIDRIDEKL 146
>gi|194477103|ref|YP_002049282.1| peptide deformylase [Paulinella chromatophora]
gi|171192110|gb|ACB43072.1| peptide deformylase [Paulinella chromatophora]
Length = 201
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 70/119 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVGIN QL+V + E I+L+NP + + + YEEGC
Sbjct: 62 MLRSMYAAKGIGLAAPQVGINKQLIVIDIDLENSTTPPIILINPEIIASNASLNTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
LS PG++ DV RP +++ RD + L AR QHE DHL+G+LF +R+ D+
Sbjct: 122 LSIPGVYLDVVRPSIIEVSFRDEQDFPRCLKTDGLLARCIQHEMDHLKGVLFVDRVKDE 180
>gi|33863868|ref|NP_895428.1| peptide deformylase [Prochlorococcus marinus str. MIT 9313]
gi|124022020|ref|YP_001016327.1| peptide deformylase [Prochlorococcus marinus str. MIT 9303]
gi|39930996|sp|Q7V5F9.1|DEF2_PROMM RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
gi|33635451|emb|CAE21776.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
MIT 9313]
gi|123962306|gb|ABM77062.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
MIT 9303]
Length = 201
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 71/119 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVGI+ QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYAAKGIGLAAPQVGIHKQLLVLDLDLETPTTPPVVLINPEIISSSATVETYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
LS PG++ +V RP + + RD G + L AR QHE DHL+G+LF +R+TD+
Sbjct: 122 LSIPGVYLNVVRPSEIVLSFRDEMGRPRKMKADGLMARCIQHEMDHLEGVLFVDRVTDE 180
>gi|347750547|ref|YP_004858112.1| peptide deformylase [Bacillus coagulans 36D1]
gi|347583065|gb|AEO99331.1| peptide deformylase [Bacillus coagulans 36D1]
Length = 161
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 73/121 (60%), Gaps = 6/121 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGE-EIVLVNPRVNKYSNKMIPYEEG 59
M++ M + DG+GL+APQVGIN Q+ V + G+G I L+NP++ + E G
Sbjct: 33 MYETMLEADGVGLAAPQVGINQQIAVIDT----GDGTGRIDLINPKIVTRRGEQTDVE-G 87
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLSFPG++ V R VK+ A+D NG F++ D AR QHE DHL G+LF ++ D
Sbjct: 88 CLSFPGVYGTVSRAHYVKVKAQDANGRAFTIEAEDFLARALQHEIDHLHGVLFTSKIIDY 147
Query: 120 V 120
V
Sbjct: 148 V 148
>gi|408374191|ref|ZP_11171880.1| peptide deformylase [Alcanivorax hongdengensis A-11-3]
gi|407765852|gb|EKF74300.1| peptide deformylase [Alcanivorax hongdengensis A-11-3]
Length = 168
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++++L+V + ++ E V +NP + ++ PYEEGC
Sbjct: 35 MFETMYDAPGIGLAASQVNVHIRLIVMDLSEDKSEPR--VFINPEITPLTDDTAPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + VERP V+I A D +G F +L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYEKVERPARVRIKALDRDGNTFEEEADELLATCIQHEIDHLDGKLFVDYVSRLK 152
Query: 121 LDSIREQLE 129
D IR++LE
Sbjct: 153 RDRIRKKLE 161
>gi|110832992|ref|YP_691851.1| peptide deformylase [Alcanivorax borkumensis SK2]
gi|122959726|sp|Q0VTE1.1|DEF_ALCBS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|110646103|emb|CAL15579.1| peptide deformylase [Alcanivorax borkumensis SK2]
Length = 168
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV +++QL+V + + +V +NP++ + + PYEEGC
Sbjct: 35 MFETMYAAPGIGLAATQVDVHIQLIVMD--LSEDHNKPMVFINPQITPLTEEQAPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + V RP V+I+A D +G F V +L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYEKVTRPARVRINALDRDGNAFEVEADELLATCIQHEMDHLDGKLFVDYVSRLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|15606030|ref|NP_213407.1| polypeptide deformylase [Aquifex aeolicus VF5]
gi|6014949|sp|O66847.1|DEF_AQUAE RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|2983203|gb|AAC06802.1| polypeptide deformylase [Aquifex aeolicus VF5]
Length = 169
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
MFD MY+ +G+GL+A Q+G+ + +MV + E ++VL+NP + + K I Y+EG
Sbjct: 34 MFDTMYEAEGVGLAANQIGVPLSVMVIDTSPKEDAPPLKLVLINPEIKEGEGK-IKYKEG 92
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
CLSFPG+ +VER + VK++A + +G ++L PA VFQHE DHL+GI F +R+
Sbjct: 93 CLSFPGLSVEVERFQKVKVNALNEHGEPVELTLEGFPAIVFQHELDHLKGITFVDRL 149
>gi|291278698|ref|YP_003495533.1| formylmethionine deformylase [Deferribacter desulfuricans SSM1]
gi|290753400|dbj|BAI79777.1| formylmethionine deformylase [Deferribacter desulfuricans SSM1]
Length = 172
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 80/129 (62%), Gaps = 1/129 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+APQVG+N +++V +P + + I ++NP + + ++I EEGC
Sbjct: 34 MVETMYAAPGLGLAAPQVGVNERILVIDPSAGEDKSKLIKIINPVIVEADGEVIE-EEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG +A+V R V + D++G + DL AR FQHE DHL G+LF +R++
Sbjct: 93 LSIPGEYANVRRAAKVLVKGLDVDGKEVEIEAEDLLARAFQHEIDHLNGVLFIDRLSPTK 152
Query: 121 LDSIREQLE 129
++I++ ++
Sbjct: 153 RETIQKHIK 161
>gi|163782173|ref|ZP_02177172.1| polypeptide deformylase [Hydrogenivirga sp. 128-5-R1-1]
gi|159882705|gb|EDP76210.1| polypeptide deformylase [Hydrogenivirga sp. 128-5-R1-1]
Length = 171
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 75/117 (64%), Gaps = 2/117 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGE-EIVLVNPRVNKYSNKMIPYEEG 59
MFD MY +G+GL+A Q+G+ + +MV + + + ++VL+NP V K Y+EG
Sbjct: 34 MFDTMYNAEGVGLAANQIGVPLSVMVIDTTPKEDVPDLKLVLINPEVIASEGKQ-KYKEG 92
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
CLSFPG+ +VER + VK+ A + +G V L D PA VFQHE DHL+GI F +R+
Sbjct: 93 CLSFPGLSVEVERAKRVKVRALNEHGEPVEVVLEDFPAIVFQHELDHLKGITFIDRL 149
>gi|333999158|ref|YP_004531770.1| peptide deformylase [Treponema primitia ZAS-2]
gi|333740828|gb|AEF86318.1| peptide deformylase [Treponema primitia ZAS-2]
Length = 162
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 79/129 (61%), Gaps = 4/129 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + M++ G+GL+ PQVG+ ++ V + G+ V +NP + S + + EEGC
Sbjct: 32 MIETMHEGKGVGLAGPQVGLMKRIFVVHIDGDAPR----VFINPSIVATSQETVKQEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI ADV RPESV++ A + G F++ + ARV QHE+DHL+G LF +R+++
Sbjct: 88 LSIPGIWADVVRPESVRVQAWNEKGRPFTLEADGIMARVIQHEYDHLEGALFIDRLSESR 147
Query: 121 LDSIREQLE 129
+ I +LE
Sbjct: 148 REKILAKLE 156
>gi|72383267|ref|YP_292622.1| peptide deformylase [Prochlorococcus marinus str. NATL2A]
gi|123773734|sp|Q46HV9.1|DEF_PROMT RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|72003117|gb|AAZ58919.1| peptide deformylase [Prochlorococcus marinus str. NATL2A]
Length = 202
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 77/128 (60%), Gaps = 2/128 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY + GIGL+APQVGI +L+V + E +V +NP + S + YEEGC
Sbjct: 62 MLITMYSSKGIGLAAPQVGIQKRLLVIDLKFEDPNSPPMVFINPEIISSSATLDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ +V RP S+K+ RD G ++ L AR QHE DHL G+ F +++TD+
Sbjct: 122 LSIPGVYLNVLRPSSIKLSYRDEMGRPKKMNADGLMARCIQHEIDHLNGVCFVDKVTDE- 180
Query: 121 LDSIREQL 128
+ +++QL
Sbjct: 181 -EELKKQL 187
>gi|428213943|ref|YP_007087087.1| peptide deformylase [Oscillatoria acuminata PCC 6304]
gi|428002324|gb|AFY83167.1| peptide deformylase [Oscillatoria acuminata PCC 6304]
Length = 187
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 71/116 (61%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG+ Q++V + E +VL+NP + K+ Y+EGC
Sbjct: 48 MLQSMYTADGIGLAAPQVGVQKQVIVVDCDLENPATPPLVLINPVIKKFGGDECTYQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LS PG++ DV+RPE +++ +D G ++ + +R QHE DHL G+LF +R+
Sbjct: 108 LSIPGVYLDVKRPEIIEVAFKDERGRPQKLTAKGIVSRCIQHEMDHLNGVLFVDRV 163
>gi|220907940|ref|YP_002483251.1| peptide deformylase [Cyanothece sp. PCC 7425]
gi|219864551|gb|ACL44890.1| peptide deformylase [Cyanothece sp. PCC 7425]
Length = 188
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 77/121 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG+N QL+V + + ++LVNP + ++S ++ +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVGVNKQLIVVDIHPDEAANPPLILVNPVIREFSPEVSLGQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV+RPE +++ +D G + S L +R QHE DHL G++F +R+ + +
Sbjct: 108 LSIPGVYLDVKRPEMIEVAYKDEQGRPQVLYASGLLSRAIQHEIDHLGGVMFVDRVENML 167
Query: 121 L 121
L
Sbjct: 168 L 168
>gi|428227261|ref|YP_007111358.1| peptide deformylase [Geitlerinema sp. PCC 7407]
gi|427987162|gb|AFY68306.1| peptide deformylase [Geitlerinema sp. PCC 7407]
Length = 187
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 70/116 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQV + QL+V + + ++L+NP + + S + +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVAVQKQLIVVDCEPDDATTPPLILINPAIQRASRDVCMAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LS PG++ DV+RPE +++ +D G + S L +R QHE DHL G+LF +R+
Sbjct: 108 LSIPGVYLDVQRPEVIEVSYKDEQGRPQKLMASGLLSRAIQHEMDHLHGVLFVDRV 163
>gi|427729378|ref|YP_007075615.1| peptide deformylase [Nostoc sp. PCC 7524]
gi|427365297|gb|AFY48018.1| peptide deformylase [Nostoc sp. PCC 7524]
Length = 187
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 74/120 (61%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG++ QL+V + + ++L+NP + + S + +EGC
Sbjct: 48 MLQTMYSNDGIGLAAPQVGVHKQLIVIDCEPDNPANPPLILINPTIKQVSRDICMAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV+RP V++ +D G ++ +DL R QHE DHL G++F +R+ + +
Sbjct: 108 LSIPGVYMDVKRPAVVEVAYKDEYGRPQTLKATDLLGRCIQHEMDHLNGVVFVDRVDNSL 167
>gi|167031105|ref|YP_001666336.1| peptide deformylase [Pseudomonas putida GB-1]
gi|166857593|gb|ABY96000.1| peptide deformylase [Pseudomonas putida GB-1]
Length = 168
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 81/129 (62%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV +++Q++V + +R E V +NP V + ++ M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHLQVVVMDLSEDRSEPR--VFINPTVEELTHDMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP V++ A+D +G F + L A QHEFDHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPLRVRVKAQDRDGKPFELECEGLLAVCVQHEFDHLNGKLFVDYLSQLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|254429252|ref|ZP_05042959.1| peptide deformylase [Alcanivorax sp. DG881]
gi|196195421|gb|EDX90380.1| peptide deformylase [Alcanivorax sp. DG881]
Length = 168
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++ +L+V + ER E + V +NP++ ++++ PYEEGC
Sbjct: 35 MIETMYDASGIGLAATQVNVHQRLLVMDLSEERNEPK--VYINPQITPLTDELAPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + V+R V+I+A D +G F V +L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYEKVKRAARVRINALDRDGNAFEVEADELLATCIQHEIDHLDGKLFVDYVSRLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|20150600|pdb|1JYM|A Chain A, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|20150601|pdb|1JYM|B Chain B, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|20150602|pdb|1JYM|C Chain C, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|20150603|pdb|1JYM|D Chain D, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|20150604|pdb|1JYM|E Chain E, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|20150605|pdb|1JYM|F Chain F, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|20150606|pdb|1JYM|G Chain G, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|20150607|pdb|1JYM|H Chain H, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|20150608|pdb|1JYM|I Chain I, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
gi|20150609|pdb|1JYM|J Chain J, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
Length = 183
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 78/128 (60%), Gaps = 2/128 (1%)
Query: 2 FDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
FD+ Y++ GIGLSAPQV I+ +++V+N + E R E E + +NP + + S + EGC
Sbjct: 34 FDIXYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSF GI VERP V I DING + L + +R+FQHEFDHL G LF ++ T
Sbjct: 94 LSF-GIEGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKXTQVD 152
Query: 121 LDSIREQL 128
+R +L
Sbjct: 153 KKKVRPKL 160
>gi|86610195|ref|YP_478957.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558737|gb|ABD03694.1| peptide deformylase [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 196
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 77/124 (62%), Gaps = 1/124 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGI +++V + ++ E +VL+NP + +Y + + +EGC
Sbjct: 50 MLQTMYSFDGIGLAAPQVGIPKRMIVVDLYPDKPEVPPLVLINPEIREYIGEAVAGQEGC 109
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD- 119
LS PG+ +V RPE + + +D G ++ DL ARV QHE DHL G+LF + + ++
Sbjct: 110 LSIPGVFCEVMRPEGIVVSFKDETGRPRTLRADDLLARVIQHEIDHLNGVLFVDHVENEL 169
Query: 120 VLDS 123
VLD
Sbjct: 170 VLDQ 173
>gi|336113758|ref|YP_004568525.1| peptide deformylase [Bacillus coagulans 2-6]
gi|335367188|gb|AEH53139.1| peptide deformylase [Bacillus coagulans 2-6]
Length = 161
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 74/121 (61%), Gaps = 6/121 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGE-EIVLVNPRVNKYSNKMIPYEEG 59
M++ M + DG+GL+APQVGI+ Q+ V + G+G I L+NP++ + E G
Sbjct: 33 MYETMLEADGVGLAAPQVGISQQIAVVDT----GDGTGRIDLINPKIVTRRGEQTDVE-G 87
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLSFPG++ V+R VK+ A+D NG F++ D AR QHE DHL G+LF ++ D
Sbjct: 88 CLSFPGVYGTVQRARYVKVKAQDANGKAFTIEAEDFLARALQHEIDHLHGVLFTSKIIDY 147
Query: 120 V 120
V
Sbjct: 148 V 148
>gi|427734665|ref|YP_007054209.1| peptide deformylase [Rivularia sp. PCC 7116]
gi|427369706|gb|AFY53662.1| peptide deformylase [Rivularia sp. PCC 7116]
Length = 187
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 73/118 (61%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +DGIGL+APQVGI+ QL+V + + ++L+NP + K + +EGC
Sbjct: 48 MLQTMYSSDGIGLAAPQVGIHKQLIVIDIEPDNPANPPLILINPIIKKSFGDICVEQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS PG++ DV+RPE +++ +D NG S+ L R QHE DHL G++F +R+ +
Sbjct: 108 LSIPGVYLDVKRPEMIEVAYKDENGRPQSLKAGGLLGRCIQHEMDHLNGVVFVDRVEN 165
>gi|440681156|ref|YP_007155951.1| peptide deformylase [Anabaena cylindrica PCC 7122]
gi|428678275|gb|AFZ57041.1| peptide deformylase [Anabaena cylindrica PCC 7122]
Length = 187
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 75/120 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGIN QL+V + ++ +VL+NP + + S+++ +EGC
Sbjct: 48 MLQTMYSEDGIGLAAPQVGINKQLIVIDCEPDKPNTPPLVLINPVIKQVSSELCIAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P ++ DV+RP+ V+I +D G ++ DL R HE DHL G++F +R+ + +
Sbjct: 108 LSIPKVYLDVKRPQVVEIAYKDEYGRPKTLKAGDLLGRCILHEMDHLNGVVFVDRVENSL 167
>gi|239617141|ref|YP_002940463.1| peptide deformylase [Kosmotoga olearia TBF 19.5.1]
gi|239505972|gb|ACR79459.1| peptide deformylase [Kosmotoga olearia TBF 19.5.1]
Length = 164
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 80/128 (62%), Gaps = 5/128 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
+ +MYK DG+GL+APQV + ++ VF+ G G + V++NP + + S +++ EEGC
Sbjct: 32 LTSIMYKEDGVGLAAPQVAVLKRMFVFDD----GSGPK-VIINPEILEKSKELVIMEEGC 86
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ADVERPE VK+ +D++G R+ QHE+DHL GILF + ++
Sbjct: 87 LSIPGVYADVERPEWVKMRYQDVDGNVHEELFEGYAGRIVQHEYDHLNGILFIDYLSPAK 146
Query: 121 LDSIREQL 128
IR +L
Sbjct: 147 KMMIRPKL 154
>gi|385810728|ref|YP_005847124.1| N-formylmethionyl-tRNA deformylase [Ignavibacterium album JCM
16511]
gi|383802776|gb|AFH49856.1| N-formylmethionyl-tRNA deformylase [Ignavibacterium album JCM
16511]
Length = 188
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 81/136 (59%), Gaps = 9/136 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV--FNPVGERGEGEEIVLVNPRVNKYSNKMIPYEE 58
MF+ M +GIGL+A Q+G+N Q+ V +PV + + I ++NP++ S++ +EE
Sbjct: 35 MFETMRNANGIGLAANQIGVNRQIFVVDISPVEGYEKYKPIAMINPKIISKSDETSSFEE 94
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
GCLS P + AD+ RP+ ++I D + DL ARV QHEFDHLQG+LF + + D
Sbjct: 95 GCLSIPDLRADIIRPKGIQISFLDTKMKEHLIEADDLLARVIQHEFDHLQGVLFIDYLDD 154
Query: 119 DV-------LDSIREQ 127
+ LD IR++
Sbjct: 155 ESKKRYKRHLDKIRKR 170
>gi|330993401|ref|ZP_08317336.1| Peptide deformylase [Gluconacetobacter sp. SXCC-1]
gi|329759431|gb|EGG75940.1| Peptide deformylase [Gluconacetobacter sp. SXCC-1]
Length = 180
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 72/117 (61%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY+ GIGL+APQVG+ ++ + + + G IVL+NP V ++ M EEGC
Sbjct: 45 MFAAMYQAPGIGLAAPQVGLGMRFAIVDVSDKDGPRNPIVLINPEVIAETDSMAAREEGC 104
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+V RPE+V++ +D+ G + DL A QHE DHL+GILF + ++
Sbjct: 105 LSLPNQYAEVVRPEAVRVRYQDMEGKVQELEADDLLATCLQHEIDHLEGILFVDHLS 161
>gi|296120519|ref|YP_003628297.1| peptide deformylase [Planctomyces limnophilus DSM 3776]
gi|296012859|gb|ADG66098.1| peptide deformylase [Planctomyces limnophilus DSM 3776]
Length = 196
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 78/124 (62%), Gaps = 8/124 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEG-EEIVLVNPRV-NKYSNKMIPYEE 58
MF++MY GIGL++ QV I Q + N G+ E EE+V +NP + N+ S+ EE
Sbjct: 34 MFELMYAAKGIGLASNQVAIPRQFFILNLTGDAAEKDEEVVFINPVILNRKSS--CEGEE 91
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLS----DLPARVFQHEFDHLQGILFFE 114
GCLSFPG++ V+R V I+A D++G F ++LS DL R QHE DHL G+LF +
Sbjct: 92 GCLSFPGLYGPVKRAGEVLIEAFDLDGNCFEMTLSAKEDDLAVRAVQHESDHLDGMLFID 151
Query: 115 RMTD 118
RMTD
Sbjct: 152 RMTD 155
>gi|443312301|ref|ZP_21041919.1| peptide deformylase [Synechocystis sp. PCC 7509]
gi|442777539|gb|ELR87814.1| peptide deformylase [Synechocystis sp. PCC 7509]
Length = 192
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 73/120 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQV + QL+V + + ++L+NP + S+++ +EGC
Sbjct: 48 MLQTMYTADGIGLAAPQVAVQKQLIVIDCEPDNPANPPLILINPTIKHLSSELCIAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P ++ DV RP+ V+I +D G ++ ++L +R QHE DHL G+LF +R+ + +
Sbjct: 108 LSIPNVYMDVTRPQMVEIAYKDEQGRPQTLRATELLSRCIQHEIDHLNGVLFVDRVQNSL 167
>gi|414341252|ref|YP_006982773.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter oxydans
H24]
gi|411026587|gb|AFV99841.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter oxydans
H24]
Length = 233
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 70/117 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MYK GIGL+APQVG+ ++ + + E E +VL+NP + S +M EEGC
Sbjct: 97 MFSAMYKAPGIGLAAPQVGLGMRFALVDVAEEDAPREPMVLINPEIVTDSEQMAVREEGC 156
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+V RPES+++ RD+ G S L A QHE DHL G+LF + ++
Sbjct: 157 LSLPNQYAEVIRPESIRVRYRDLAGEIIERDASGLLATCIQHEMDHLDGVLFVDHLS 213
>gi|124024845|ref|YP_001013961.1| peptide deformylase [Prochlorococcus marinus str. NATL1A]
gi|158512738|sp|A2BZN6.1|DEF_PROM1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|123959913|gb|ABM74696.1| putative formylmethionine deformylase [Prochlorococcus marinus str.
NATL1A]
Length = 202
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 77/128 (60%), Gaps = 2/128 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY + GIGL+APQVGI +L+V + E +V +NP + S + YEEGC
Sbjct: 62 MLITMYSSKGIGLAAPQVGIQKRLLVIDLNFEDPNSPPMVFINPEIISSSATVDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ +V RP S+K+ RD G ++ L AR QHE DHL G+ F +++TD+
Sbjct: 122 LSIPGVYLNVLRPSSIKLSYRDEMGRPKKMNADGLMARCIQHEIDHLNGVCFVDKVTDE- 180
Query: 121 LDSIREQL 128
+ +++QL
Sbjct: 181 -EELKKQL 187
>gi|404366440|ref|ZP_10971823.1| peptide deformylase [Fusobacterium ulcerans ATCC 49185]
gi|313689290|gb|EFS26125.1| peptide deformylase [Fusobacterium ulcerans ATCC 49185]
Length = 173
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 75/118 (63%), Gaps = 4/118 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI-VLVNPRVNKYSNKMIPYEEG 59
M + MY G+GL+APQ+GI+ +++V + GEGE + +VNP + + + I +EEG
Sbjct: 34 MAETMYDKKGVGLAAPQIGISKRMLVLD---WSGEGEALRKVVNPVITPLTEEKIDWEEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLS PGI+ VER +++D + G + + L PA V QHEFDHL+ +LF +R++
Sbjct: 91 CLSIPGIYKKVERVAKIRVDYLNEKGEKVTEELEGFPAIVMQHEFDHLEAVLFVDRIS 148
>gi|443477595|ref|ZP_21067430.1| peptide deformylase [Pseudanabaena biceps PCC 7429]
gi|443017242|gb|ELS31726.1| peptide deformylase [Pseudanabaena biceps PCC 7429]
Length = 188
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 71/120 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVGIN QL+V + + +V++NP + +I EEGC
Sbjct: 49 MLQTMYSNDGIGLAAPQVGINKQLLVIDIELKDESKPALVMINPEIKSSGGDLITGEEGC 108
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + DV RP+ V++ RD +G + L ARV QHE DHL G+LF +R+ + +
Sbjct: 109 LSIPEVFLDVVRPDRVEVSYRDEDGRPQHMIAEGLLARVIQHEMDHLNGVLFVDRVKNPI 168
>gi|193213195|ref|YP_001999148.1| peptide deformylase [Chlorobaculum parvum NCIB 8327]
gi|238692654|sp|B3QPU5.1|DEF_CHLP8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|193086672|gb|ACF11948.1| peptide deformylase [Chlorobaculum parvum NCIB 8327]
Length = 187
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 79/135 (58%), Gaps = 10/135 (7%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV--FNPVGERGEGEEIVLVNPRVNKYSNKMIPYEE 58
MFD MYK GIGL+APQVG +++L+V + + E + + +V++NPR+ + + EE
Sbjct: 34 MFDSMYKAPGIGLAAPQVGHSLRLLVVDISTIKEYADYKPMVVINPRIVSVAGRNA-MEE 92
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM-- 116
GCLS PG+ DV RP + + RD + SD+ ARV QHE DHL G LF +RM
Sbjct: 93 GCLSVPGVAGDVVRPSKITLHYRDEKFEEHTEEFSDMMARVLQHEIDHLDGTLFVDRMEK 152
Query: 117 -----TDDVLDSIRE 126
LD+I++
Sbjct: 153 RDRRKVQKTLDAIKQ 167
>gi|374316850|ref|YP_005063278.1| peptide deformylase [Sphaerochaeta pleomorpha str. Grapes]
gi|359352494|gb|AEV30268.1| peptide deformylase [Sphaerochaeta pleomorpha str. Grapes]
Length = 168
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 70/116 (60%), Gaps = 4/116 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ + + DG+GL+APQ+G++ +L V N E+ VNP++ + S + EEGC
Sbjct: 33 MFETLDEADGVGLAAPQIGVSSRLFVINI----RNVEKRAFVNPQIIETSIETSSAEEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LS PG+ DVERP V + A+DI G F + L AR QHE DHL GILF R+
Sbjct: 89 LSIPGVWHDVERPAQVTVQAQDIEGKAFVIKAEGLLARAIQHENDHLNGILFINRL 144
>gi|340778711|ref|ZP_08698654.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter aceti NBRC
14818]
Length = 182
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY GIGL+APQVGI+ + ++ + +G+ + + IVL+NP + S M P EEGC
Sbjct: 48 MFSAMYAAPGIGLAAPQVGISQRYVIVD-LGDAEDRQPIVLINPEILTESEVMTPREEGC 106
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+V RPE+V++ ++ G R + L A QHE DHL G+LF + ++
Sbjct: 107 LSLPNQYAEVVRPEAVRVRWTNVEGERCEREVDGLLATCIQHEIDHLDGVLFVDHLS 163
>gi|422406596|ref|ZP_16483621.1| peptide deformylase, partial [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330881833|gb|EGH15982.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
Length = 136
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E +V +NP + K +++M Y+EGC
Sbjct: 3 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEP--MVFINPEIEKLTDEMDQYQEGC 60
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V++ A D NG + + L A QHE DHL G LF + +++
Sbjct: 61 LSVPGFYENVDRPQKVRVKALDRNGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSNLK 120
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 121 RDRIKKKLE 129
>gi|71737781|ref|YP_272335.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|416013325|ref|ZP_11561485.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. B076]
gi|416022744|ref|ZP_11567837.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
gi|71558334|gb|AAZ37545.1| peptide deformylase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|320326682|gb|EFW82727.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. B076]
gi|320331344|gb|EFW87287.1| peptide deformylase [Pseudomonas syringae pv. glycinea str. race 4]
Length = 168
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E +V +NP + K +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEP--MVFINPEIEKLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V++ A D NG + + L A QHE DHL G LF + +++
Sbjct: 93 LSVPGFYENVDRPQKVRVKALDRNGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSNLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|225181326|ref|ZP_03734770.1| peptide deformylase [Dethiobacter alkaliphilus AHT 1]
gi|225167907|gb|EEG76714.1| peptide deformylase [Dethiobacter alkaliphilus AHT 1]
Length = 154
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 73/117 (62%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+APQVGI+ +++V + E G + L+NP + K E GC
Sbjct: 35 MVETMYDAEGIGLAAPQVGISKRIIVIDVQDETGV---LKLINPEIISGEGKETSVE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LSFPG+ +VER ESV + A+D +G + S L AR FQHE DHL GILF +++T
Sbjct: 91 LSFPGVAGEVERDESVTVRAQDPDGNTVEICASGLLARAFQHEIDHLDGILFVDKVT 147
>gi|296115067|ref|ZP_06833709.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769]
gi|295978404|gb|EFG85140.1| peptide deformylase [Gluconacetobacter hansenii ATCC 23769]
Length = 180
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
MF MYK GIGL+APQVG+ ++ + + V ++ E +VL+NP + + M EEG
Sbjct: 45 MFAAMYKAPGIGLAAPQVGLGLRFALVD-VADKDEARNPMVLINPDIIAETETMSVREEG 103
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLS P +A+V RPESV++ +D+ G R + + L A QHE DHL+GILF + ++
Sbjct: 104 CLSLPNQYAEVARPESVRVRYQDLEGKRHEIEVDGLLATCIQHEIDHLEGILFVDHLS 161
>gi|87301353|ref|ZP_01084194.1| peptide deformylase [Synechococcus sp. WH 5701]
gi|87284321|gb|EAQ76274.1| peptide deformylase [Synechococcus sp. WH 5701]
Length = 201
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVG++ Q++V + E +VLVNP +N S + YEEGC
Sbjct: 62 MLRSMYSAHGIGLAAPQVGVHKQVLVIDLDPENPATPPMVLVNPEINATSAALNTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ V RP ++ RD G + L AR HE DHL+G+LF + ++D++
Sbjct: 122 LSIPGVYLSVVRPSEAEVSYRDEQGRPRRIKADGLLARCILHEMDHLKGVLFVDLVSDEL 181
Query: 121 LDSIREQLE 129
S+ E+L+
Sbjct: 182 --SLNEELK 188
>gi|26986813|ref|NP_742238.1| peptide deformylase [Pseudomonas putida KT2440]
gi|148545341|ref|YP_001265443.1| peptide deformylase [Pseudomonas putida F1]
gi|386009734|ref|YP_005928011.1| hypothetical protein PPUBIRD1_0097 [Pseudomonas putida BIRD-1]
gi|395446391|ref|YP_006386644.1| peptide deformylase [Pseudomonas putida ND6]
gi|397693663|ref|YP_006531543.1| peptide deformylase 1 [Pseudomonas putida DOT-T1E]
gi|421523117|ref|ZP_15969748.1| peptide deformylase [Pseudomonas putida LS46]
gi|32363155|sp|Q88RR1.1|DEF1_PSEPK RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|24981409|gb|AAN65702.1|AE016196_13 polypeptide deformylase [Pseudomonas putida KT2440]
gi|148509399|gb|ABQ76259.1| peptide deformylase [Pseudomonas putida F1]
gi|313496440|gb|ADR57806.1| Def [Pseudomonas putida BIRD-1]
gi|388560388|gb|AFK69529.1| peptide deformylase [Pseudomonas putida ND6]
gi|397330393|gb|AFO46752.1| Peptide deformylase 1 [Pseudomonas putida DOT-T1E]
gi|402752938|gb|EJX13441.1| peptide deformylase [Pseudomonas putida LS46]
Length = 168
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 80/129 (62%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ Q++V + +R E V +NP V + ++ M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKQVVVMDLSEDRSEPR--VFINPSVEELTHDMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP V++ A+D +G F + L A QHEFDHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPLRVRVKAQDRDGKPFELECEGLLAVCVQHEFDHLNGKLFVDYLSQLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|422620759|ref|ZP_16689434.1| peptide deformylase [Pseudomonas syringae pv. japonica str.
M301072]
gi|422628602|ref|ZP_16693810.1| peptide deformylase [Pseudomonas syringae pv. pisi str. 1704B]
gi|422665996|ref|ZP_16725866.1| peptide deformylase [Pseudomonas syringae pv. aptata str. DSM
50252]
gi|424065254|ref|ZP_17802734.1| polypeptide deformylase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|424069923|ref|ZP_17807365.1| polypeptide deformylase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|440719870|ref|ZP_20900293.1| peptide deformylase [Pseudomonas syringae BRIP34876]
gi|440728125|ref|ZP_20908344.1| peptide deformylase [Pseudomonas syringae BRIP34881]
gi|443640746|ref|ZP_21124596.1| Peptide deformylase [Pseudomonas syringae pv. syringae B64]
gi|330901114|gb|EGH32533.1| peptide deformylase [Pseudomonas syringae pv. japonica str.
M301072]
gi|330937252|gb|EGH41267.1| peptide deformylase [Pseudomonas syringae pv. pisi str. 1704B]
gi|330976422|gb|EGH76478.1| peptide deformylase [Pseudomonas syringae pv. aptata str. DSM
50252]
gi|408001647|gb|EKG41942.1| polypeptide deformylase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|408003560|gb|EKG43731.1| polypeptide deformylase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|440362232|gb|ELP99432.1| peptide deformylase [Pseudomonas syringae BRIP34881]
gi|440367110|gb|ELQ04179.1| peptide deformylase [Pseudomonas syringae BRIP34876]
gi|443280763|gb|ELS39768.1| Peptide deformylase [Pseudomonas syringae pv. syringae B64]
Length = 168
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 83/129 (64%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E +VL+NP + K +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEP--MVLINPEIEKLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V++ A D +G + + L A QHE DHL G LF + +++
Sbjct: 93 LSVPGFYENVDRPQKVRVKALDRDGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSNLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|262374668|ref|ZP_06067941.1| peptide deformylase [Acinetobacter junii SH205]
gi|262310458|gb|EEY91549.1| peptide deformylase [Acinetobacter junii SH205]
Length = 176
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+A QV ++QL+V + E+ + +V +NP+V + + PYEEGC
Sbjct: 35 MLETMYEAPGIGLAATQVDHHIQLIVMDLSEEKNQP--MVFINPKVTPLTQETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ VERP VKI+A +++G F + +L A QHE DHL G LF + ++
Sbjct: 93 LSVPQIYDKVERPSRVKIEAINLDGQAFELEADELLAVCIQHEMDHLNGKLFVDYLSPLK 152
Query: 121 LDSIREQLE 129
RE++E
Sbjct: 153 RQRAREKVE 161
>gi|406040355|ref|ZP_11047710.1| peptide deformylase [Acinetobacter ursingii DSM 16037 = CIP 107286]
Length = 174
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++QL+V + + + +V +NP+V + + PYEEGC
Sbjct: 35 MFETMYEAPGIGLAATQVDRHIQLIVMD--LSENKDQPMVFINPKVTPLTEETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ VERP VKI+A +++G F + +L A QHE DHL G LF + ++
Sbjct: 93 LSVPQIYDKVERPSRVKIEAINLDGQAFELEADELLAVCIQHEMDHLNGKLFVDYLSPLK 152
Query: 121 LDSIREQLE 129
RE++E
Sbjct: 153 RQRAREKVE 161
>gi|398847284|ref|ZP_10604208.1| peptide deformylase [Pseudomonas sp. GM84]
gi|398251732|gb|EJN36965.1| peptide deformylase [Pseudomonas sp. GM84]
Length = 168
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 80/129 (62%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ Q++V + +R E V +NP V + ++ M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKQVVVMDLSEDRSEPR--VFINPTVEELTHDMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP V++ A+D +G F + L A QHEFDHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPLRVRVKAQDRDGKPFELECEGLLAVCVQHEFDHLNGKLFVDYLSQLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|262371336|ref|ZP_06064654.1| peptide deformylase 1 [Acinetobacter johnsonii SH046]
gi|381198512|ref|ZP_09905850.1| peptide deformylase [Acinetobacter lwoffii WJ10621]
gi|262313673|gb|EEY94722.1| peptide deformylase 1 [Acinetobacter johnsonii SH046]
Length = 177
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++QL+V + + E + + +V +NP+V + + PYEEGC
Sbjct: 35 MFETMYEAPGIGLAATQVDRHIQLIVMD-LSEHKD-QPLVFINPKVTPLTEETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ VERP VKI+A ++ G F + +L A QHE DHL G LF + ++
Sbjct: 93 LSVPQIYDKVERPSRVKIEAINLEGQAFEIEADELLAVCIQHEMDHLNGKLFVDYLSPLK 152
Query: 121 LDSIREQLE 129
RE++E
Sbjct: 153 RQRAREKVE 161
>gi|170719274|ref|YP_001746962.1| peptide deformylase [Pseudomonas putida W619]
gi|169757277|gb|ACA70593.1| peptide deformylase [Pseudomonas putida W619]
Length = 168
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 80/129 (62%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ Q++V + +R E V +NP V + ++ M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKQIVVMDLSEDRSEPR--VFINPSVEELTHDMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP V++ A+D +G F + L A QHEFDHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPLRVRVKAQDRDGKPFELEAEGLLAVCVQHEFDHLNGKLFVDYLSQLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|322434765|ref|YP_004216977.1| peptide deformylase [Granulicella tundricola MP5ACTX9]
gi|321162492|gb|ADW68197.1| peptide deformylase [Granulicella tundricola MP5ACTX9]
Length = 188
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+APQ+GI+ ++ V + ++ + + L+NP + + K + EEGC
Sbjct: 53 MFESMYEAQGIGLAAPQIGISERITVIDVSFKKNPKDRLALINPVIIEAEGKQVE-EEGC 111
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P I V R VK+ A+D+ G F V +L AR QHE DHL G+LF +R++
Sbjct: 112 LSLPDIREKVSRAGWVKVKAQDVTGTWFEVEGDELLARALQHEIDHLDGVLFIDRIS 168
>gi|415886519|ref|ZP_11548299.1| peptide deformylase [Bacillus methanolicus MGA3]
gi|387587206|gb|EIJ79529.1| peptide deformylase [Bacillus methanolicus MGA3]
Length = 161
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 72/117 (61%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+G+N Q+ + + E G I L+NP + + S + EGC
Sbjct: 35 MYDTMIEYDGVGLAAPQIGVNKQIAIVDIDDETGP---IELINPEIMETSGEQ-SGPEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LSFPG++ +V RP VK+ A+D G F + D AR QHE DHL G+LF ++T
Sbjct: 91 LSFPGLYGEVTRPYFVKVKAQDRKGKSFIIEAEDFLARAIQHEIDHLHGVLFISKIT 147
>gi|91204615|emb|CAJ70843.1| strongly similar to peptide deformylase [Candidatus Kuenenia
stuttgartiensis]
Length = 170
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 78/129 (60%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + GIGL+APQVG +V+L V + VG + V +NP + + + + EEGC
Sbjct: 32 MVELMRRVHGIGLAAPQVGWSVRLFVIDVVGNNVDDN--VFINPSIMEEAGE-TSNEEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPGI V R +K+ A ++NG + V L DL AR +QHE DHL G LF +RM+
Sbjct: 89 LSFPGIMGKVIRTHKIKVCAYNLNGQKIEVVLEDLLARAWQHELDHLNGCLFIDRMSPAS 148
Query: 121 LDSIREQLE 129
+ +QL+
Sbjct: 149 RLAASQQLK 157
>gi|50235447|gb|AAT70831.1| polypeptide deformylase [Borrelia hermsii]
Length = 185
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 79/124 (63%), Gaps = 3/124 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M G+GL+APQVG+++ + V V E + +V +NP + + S ++ Y+EGC
Sbjct: 52 MVNLMDINKGVGLAAPQVGLDLSIFV---VRENVMSKPLVFINPLITETSFELSVYKEGC 108
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ D+ RP+S+ ++A D NG F + S L ARV QHE DHL+G+LF + D +
Sbjct: 109 LSIPGVYYDLLRPKSITVEAYDENGKFFKIESSSLLARVVQHEMDHLKGVLFIDYYEDKL 168
Query: 121 LDSI 124
+ +
Sbjct: 169 RNKL 172
>gi|162147911|ref|YP_001602372.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
gi|209542528|ref|YP_002274757.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
gi|161786488|emb|CAP56070.1| Peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
gi|209530205|gb|ACI50142.1| peptide deformylase [Gluconacetobacter diazotrophicus PAl 5]
Length = 179
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY+ GIGL+APQVG+ ++ + + +GE GE + ++L+NP V S+ + EEGC
Sbjct: 45 MFAAMYQAPGIGLAAPQVGMGLRFAIVD-LGEEGERQPLILINPDVIAESDSLASREEGC 103
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+V RP+ V++ R ++G + L A QHE DHL+GILF + ++
Sbjct: 104 LSLPNQYAEVIRPDRVRVRYRTLDGTEEELEADGLLATCIQHEIDHLEGILFVDHLS 160
>gi|88860597|ref|ZP_01135234.1| N-terminal methionine peptide deformylase [Pseudoalteromonas
tunicata D2]
gi|88817192|gb|EAR27010.1| N-terminal methionine peptide deformylase [Pseudoalteromonas
tunicata D2]
Length = 167
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 80/129 (62%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ GIGL+A Q I+++++V + ++ + ++VL+NP + K I EEGC
Sbjct: 35 MFDTMYEESGIGLAATQANIHLRIVVIDVTEDKSD--QLVLINPEITKKDGSTIS-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P +A V+R E+V + A +++G FS+ L A QHE DHLQG LF + ++
Sbjct: 92 LSVPNSYAKVDRAETVTVKALNLDGQEFSLDADGLLAICIQHELDHLQGKLFVDYLSPLK 151
Query: 121 LDSIREQLE 129
D IR++LE
Sbjct: 152 RDRIRKKLE 160
>gi|363897054|ref|ZP_09323597.1| polypeptide deformylase [Oribacterium sp. ACB7]
gi|361959681|gb|EHL12957.1| polypeptide deformylase [Oribacterium sp. ACB7]
Length = 164
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 77/129 (59%), Gaps = 4/129 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ +G+GL+APQVGI QL V + G+G++ V +NP + +M EEGC
Sbjct: 35 MFETMYEANGVGLAAPQVGILKQLFVVDI----GDGKQYVAINPEITTLGEEMQTGEEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG V RP + + A + N + + S AR F HE DHLQGIL+ E++ ++
Sbjct: 91 LSVPGKEGVVTRPMRILMKALNQNMEEYELEASGFLARAFMHENDHLQGILYTEKVEGEL 150
Query: 121 LDSIREQLE 129
D + E+L+
Sbjct: 151 EDVVYEELD 159
>gi|187917944|ref|YP_001883507.1| peptide deformylase [Borrelia hermsii DAH]
gi|119860792|gb|AAX16587.1| peptide deformylase [Borrelia hermsii DAH]
Length = 174
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 79/124 (63%), Gaps = 3/124 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M G+GL+APQVG+++ + V V E + +V +NP + + S ++ Y+EGC
Sbjct: 41 MVNLMDINKGVGLAAPQVGLDLSIFV---VRENVMSKPLVFINPLITETSFELSVYKEGC 97
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ D+ RP+S+ ++A D NG F + S L ARV QHE DHL+G+LF + D +
Sbjct: 98 LSIPGVYYDLLRPKSITVEAYDENGKFFKIESSSLLARVVQHEMDHLKGVLFIDYYEDKL 157
Query: 121 LDSI 124
+ +
Sbjct: 158 RNKL 161
>gi|425744414|ref|ZP_18862471.1| peptide deformylase [Acinetobacter baumannii WC-323]
gi|425490927|gb|EKU57218.1| peptide deformylase [Acinetobacter baumannii WC-323]
Length = 176
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++QL+V + E+ + +V +NP+V + + PYEEGC
Sbjct: 35 MFETMYEAPGIGLAATQVDHHIQLIVMDISEEKNQP--MVFINPKVIPLTEETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ VERP VKI+A ++ G F + +L A QHE DHL G LF + ++
Sbjct: 93 LSVPQIYDKVERPSRVKIEAINLEGQAFELEADELLAVCIQHEMDHLNGKLFVDYLSPLK 152
Query: 121 LDSIREQLE 129
RE++E
Sbjct: 153 RQRAREKVE 161
>gi|333985556|ref|YP_004514766.1| peptide deformylase [Methylomonas methanica MC09]
gi|333809597|gb|AEG02267.1| Peptide deformylase [Methylomonas methanica MC09]
Length = 176
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 78/122 (63%), Gaps = 5/122 (4%)
Query: 3 DVMYKTDGIGLSAPQVGINVQLMVF--NPVGERGEGEE---IVLVNPRVNKYSNKMIPYE 57
D M+++ G+G++APQ+G + Q+++ P + E +V+VNP+ N++I
Sbjct: 40 DRMFESGGVGIAAPQLGASWQIIIVASRPTERYPDAPEMAPVVVVNPQFQIMDNRLIKDW 99
Query: 58 EGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
EGCLS PGI A V R S+ +D +D+NG L D PARVFQHE+DHLQG+++ +R+
Sbjct: 100 EGCLSVPGIRALVPRYRSIHVDYQDLNGQPRQTVLEDFPARVFQHEYDHLQGLVYLDRVE 159
Query: 118 DD 119
++
Sbjct: 160 NN 161
>gi|335046992|ref|ZP_08540015.1| peptide deformylase [Oribacterium sp. oral taxon 108 str. F0425]
gi|333760778|gb|EGL38335.1| peptide deformylase [Oribacterium sp. oral taxon 108 str. F0425]
Length = 164
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 77/129 (59%), Gaps = 4/129 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ +G+GL+APQVGI QL V + G+G++ V +NP + +M EEGC
Sbjct: 35 MFETMYEANGVGLAAPQVGILKQLFVVDI----GDGKQYVAINPEITTLGEEMQTGEEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG V RP + + A + N + + S AR F HE DHLQGIL+ E++ ++
Sbjct: 91 LSVPGKEGLVTRPMRILMKALNQNMEEYELEASGFLARAFMHENDHLQGILYTEKVEGEL 150
Query: 121 LDSIREQLE 129
D + E+L+
Sbjct: 151 EDVVYEELD 159
>gi|359427639|ref|ZP_09218687.1| peptide deformylase [Acinetobacter sp. NBRC 100985]
gi|358237056|dbj|GAB00226.1| peptide deformylase [Acinetobacter sp. NBRC 100985]
Length = 176
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+A QV ++QL+V + E+ + +V +NP+V + + PYEEGC
Sbjct: 35 MLETMYEAPGIGLAATQVDHHIQLIVMDLSEEKNQP--MVFINPKVTPLTQETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ VERP VKI+A ++ G F + +L A QHE DHL G LF + ++
Sbjct: 93 LSVPQIYDKVERPSRVKIEAINLEGQAFELEADELLAVCIQHEMDHLNGKLFVDYLSPLK 152
Query: 121 LDSIREQLE 129
RE++E
Sbjct: 153 RQRAREKVE 161
>gi|331007625|ref|ZP_08330767.1| Peptide deformylase [gamma proteobacterium IMCC1989]
gi|330418565|gb|EGG93089.1| Peptide deformylase [gamma proteobacterium IMCC1989]
Length = 166
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV I+ Q++V + ++ E + V +NP + ++ Y+EGC
Sbjct: 35 MFETMYAAPGIGLAATQVNIHQQIIVMDLSEDKSEPQ--VFINPSITVQGEELDSYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + VERP+S+K++A D NG+ F + L A QHE DHL G LF + +++
Sbjct: 93 LSVPGFYESVERPKSIKVEAIDRNGSPFIIEPEGLLAVCIQHEIDHLNGKLFVDYLSNMK 152
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 153 RQRIRKKLE 161
>gi|169632177|ref|YP_001705913.1| peptide deformylase [Acinetobacter baumannii SDF]
gi|238688145|sp|B0VNL8.1|DEF_ACIBS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|169150969|emb|CAO99588.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
binds Zn(II)) [Acinetobacter baumannii]
Length = 176
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++QL+V + + E +V +NP+V + + PYEEGC
Sbjct: 35 MFETMYAAPGIGLAASQVDRHIQLIVMD--LSESKDEPMVFINPKVTPLTEETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ V+RP VKI+A ++ G F + L A QHE DHL G LF + ++
Sbjct: 93 LSVPQIYDKVDRPSRVKIEAINLEGQAFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLK 152
Query: 121 LDSIREQLE 129
+RE++E
Sbjct: 153 RQRVREKVE 161
>gi|383767493|ref|YP_005446475.1| peptide deformylase [Phycisphaera mikurensis NBRC 102666]
gi|381387762|dbj|BAM04578.1| peptide deformylase [Phycisphaera mikurensis NBRC 102666]
Length = 172
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M+ G+GL+APQVG+ +L V N G+ EG++ V NP ++ S EEGC
Sbjct: 39 MIELMHAAPGVGLAAPQVGLPWRLFVANWSGD--EGDDHVFFNPVLSDASAATAAKEEGC 96
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P + +V RP V I A ++G F + S PARV+QHE DHL G++ ++MT
Sbjct: 97 LSLPEVQVEVTRPREVTIRAVGLDGEAFQRTASGFPARVWQHECDHLDGVMILDKMT 153
>gi|226952176|ref|ZP_03822640.1| zinc peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA
deformylase) [Acinetobacter sp. ATCC 27244]
gi|294648885|ref|ZP_06726341.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194]
gi|226837014|gb|EEH69397.1| zinc peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA
deformylase) [Acinetobacter sp. ATCC 27244]
gi|292825276|gb|EFF84023.1| peptide deformylase [Acinetobacter haemolyticus ATCC 19194]
Length = 176
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+A QV ++QL+V + E+ + +V +NP+V + + PYEEGC
Sbjct: 35 MLETMYEAPGIGLAATQVDHHIQLIVMDLSEEKNQP--MVFINPKVTPLTEETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ VERP VKI+A ++ G F + +L A QHE DHL G LF + ++
Sbjct: 93 LSVPQIYDKVERPSRVKIEAINLEGQAFELEADELLAVCIQHEMDHLNGKLFVDYLSPLK 152
Query: 121 LDSIREQLE 129
RE++E
Sbjct: 153 RQRAREKVE 161
>gi|224534861|ref|ZP_03675430.1| peptide deformylase [Borrelia spielmanii A14S]
gi|224513801|gb|EEF84126.1| peptide deformylase [Borrelia spielmanii A14S]
Length = 165
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 75/114 (65%), Gaps = 3/114 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E + +V +NP + + S ++ Y+EGC
Sbjct: 32 MIELMDISSGVGLAAPQVGLDLSLFV---VRENKMAKPLVFINPLITETSYELNSYKEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
LS PG++ D+ RP+++ ++ D NG F++ SD AR+ QHE DHL G+LF +
Sbjct: 89 LSIPGVYYDLMRPKTIVVNFYDENGKSFTIENSDFLARIIQHEMDHLNGVLFID 142
>gi|339024890|ref|ZP_08646782.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter tropicalis
NBRC 101654]
gi|338750100|dbj|GAA10086.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter tropicalis
NBRC 101654]
Length = 188
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY+ GIGL+APQVG++++ + + +GE+ E I+++NP V S + EEGC
Sbjct: 53 MFSAMYEAPGIGLAAPQVGLSLRFALVD-LGEKDAREPIIMINPEVVAESETLAAREEGC 111
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+V RPE V++ R + G + L A QHE DHL+G+LF + ++
Sbjct: 112 LSLPNQYAEVTRPEQVRVKWRSLEGDLIEREVDGLLATCMQHEIDHLEGVLFVDHLS 168
>gi|203283991|ref|YP_002221731.1| polypeptide deformylase [Borrelia duttonii Ly]
gi|203287534|ref|YP_002222549.1| polypeptide deformylase [Borrelia recurrentis A1]
gi|201083434|gb|ACH93025.1| polypeptide deformylase [Borrelia duttonii Ly]
gi|201084754|gb|ACH94328.1| polypeptide deformylase [Borrelia recurrentis A1]
Length = 165
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M +M K+ G+GL+APQVG+++ + V V + + +V +NP + S ++ Y+EGC
Sbjct: 32 MIGLMDKSKGVGLAAPQVGLDLSIFV---VRKNMMSKPLVFINPVITSKSVELSVYKEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ D+ RP+S+ I+A D NG F + D+ AR+ QHE DHL+G+LF + D +
Sbjct: 89 LSIPGVYYDLSRPKSIVIEAYDENGKFFKIEDLDILARIIQHEMDHLKGVLFIDYYEDKL 148
>gi|326783953|ref|YP_004324347.1| RIIA-RIIB membrane-associated protein [Synechococcus phage S-SSM7]
gi|310003965|gb|ADO98360.1| RIIA-RIIB membrane-associated protein [Synechococcus phage S-SSM7]
Length = 128
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 74/118 (62%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + M+ +DGIGL+APQVGIN +++V + E ++VNP++ S + + ++EGC
Sbjct: 8 MCEAMWASDGIGLAAPQVGINKRVIVVDETTEEHGKYAHLMVNPKITWKSEEKVLFDEGC 67
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS P + +V RP+S+K+ ++ +G L L ARV QHE DHL+GILF + D
Sbjct: 68 LSVPDQNGEVLRPKSIKVTFQNKDGKYKKWKLDGLAARVVQHEIDHLEGILFVDYFND 125
>gi|255319595|ref|ZP_05360807.1| peptide deformylase [Acinetobacter radioresistens SK82]
gi|262380781|ref|ZP_06073934.1| peptide deformylase [Acinetobacter radioresistens SH164]
gi|421464567|ref|ZP_15913257.1| peptide deformylase [Acinetobacter radioresistens WC-A-157]
gi|421857579|ref|ZP_16289911.1| peptide deformylase [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
gi|255303350|gb|EET82555.1| peptide deformylase [Acinetobacter radioresistens SK82]
gi|262297729|gb|EEY85645.1| peptide deformylase [Acinetobacter radioresistens SH164]
gi|400205320|gb|EJO36301.1| peptide deformylase [Acinetobacter radioresistens WC-A-157]
gi|403187002|dbj|GAB76112.1| peptide deformylase [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
Length = 176
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++QL+V + E+ + +V +NP++ + PYEEGC
Sbjct: 35 MFETMYEAPGIGLAATQVDRHIQLIVMDLSEEKNQP--MVFINPKITPLTEDTQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ VERP VKI+A ++ G F + L A QHE DHL G LF + ++
Sbjct: 93 LSVPQIYDKVERPSRVKIEALNLEGNAFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLK 152
Query: 121 LDSIREQLE 129
RE++E
Sbjct: 153 RQRAREKVE 161
>gi|58040267|ref|YP_192231.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter oxydans
621H]
gi|58002681|gb|AAW61575.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter oxydans
621H]
Length = 184
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 71/117 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MYK GIGL+APQVG+ ++ + + E E ++L+NP + S+++ EEGC
Sbjct: 48 MFSAMYKAPGIGLAAPQVGLGMRFALVDVAEEDAPREPMLLINPEIISDSDQLAAREEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+V RPES+++ R++ G S L A QHE DHL GILF + ++
Sbjct: 108 LSLPNQYAEVVRPESIRVRYRNLAGETIERDASGLLATCIQHEMDHLDGILFVDHLS 164
>gi|386859293|ref|YP_006271999.1| Peptide deformylase [Borrelia crocidurae str. Achema]
gi|384934174|gb|AFI30847.1| Peptide deformylase [Borrelia crocidurae str. Achema]
Length = 165
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M +M K+ G+GL+APQVG+++ + V V + + +V +NP + S ++ Y+EGC
Sbjct: 32 MIGLMDKSKGVGLAAPQVGLDLSIFV---VRKNMMSKPLVFINPVITSKSIELSVYKEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ D+ RP+S+ I+A D NG F + D+ AR+ QHE DHL+G+LF + D +
Sbjct: 89 LSIPGVYYDLSRPKSIVIEAYDENGKFFKIEDLDILARIIQHEMDHLKGVLFIDYYEDKL 148
>gi|119952868|ref|YP_945077.1| peptide deformylase [Borrelia turicatae 91E135]
gi|119861639|gb|AAX17407.1| peptide deformylase [Borrelia turicatae 91E135]
Length = 165
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 81/124 (65%), Gaps = 3/124 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M +G+GL+A QVG+++ + V V E + ++ +NP + + S +++ Y+EGC
Sbjct: 32 MVNLMDAKNGVGLAASQVGLDLSIFV---VRENAMSKPLIFINPLITETSFELVLYKEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ D+ RP+S+ ++A D NG F + S L AR+ QHE DHL+G+LF + D +
Sbjct: 89 LSIPGVYYDLLRPKSIIVEAYDENGEFFKIESSGLLARIVQHEMDHLKGVLFIDYYEDKL 148
Query: 121 LDSI 124
+++
Sbjct: 149 RNNL 152
>gi|378824654|ref|YP_005187386.1| peptide deformylase [Sinorhizobium fredii HH103]
gi|365177706|emb|CCE94561.1| peptide deformylase [Sinorhizobium fredii HH103]
Length = 174
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 72/117 (61%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G++ +L+V + E E + +V +NP++ K + + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVSKRLLVLDVSKEGEEKKPLVFINPKIVKSTEERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP + ++ RD +G SV L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAGITVEYRDRDGKEQSVEADGLLATCLQHEIDHLNGVLFIDYIS 151
>gi|302186428|ref|ZP_07263101.1| peptide deformylase [Pseudomonas syringae pv. syringae 642]
Length = 168
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E +V +NP + K +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEP--MVFINPEIEKLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V++ A D +G + + L A QHE DHL G LF + +++
Sbjct: 93 LSVPGFYENVDRPQKVRVKALDRDGKPYELVAEGLLATCIQHECDHLNGKLFVDYLSNLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|297171900|gb|ADI22887.1| N-formylmethionyl-tRNA deformylase [uncultured Rhizobium sp.
HF0500_35F13]
Length = 194
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+++MY+ +GIGL+A QV + ++ + N G+R EGEE+V +NP +++ EEGC
Sbjct: 32 MYELMYEANGIGLAANQVDLPLRFFIVNTAGDRDEGEELVFINPVLSQ-PEGRGEEEEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
LS P ++ V RP ++ + A ++ G FS LS+ ARV QHE DHL G+LF +R++ D
Sbjct: 91 LSIPAVYGKVMRPTTIHVQAYNLEGQPFSAELSETLARVVQHETDHLDGVLFTDRISHD 149
>gi|349686487|ref|ZP_08897629.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconacetobacter
oboediens 174Bp2]
Length = 180
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 75/118 (63%), Gaps = 2/118 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
MF MY+ GIGL+APQVG+ ++ + + V ++ E +VL+NP V ++ M EEG
Sbjct: 45 MFAAMYQAPGIGLAAPQVGLGMRFAIVD-VADKDEARNPLVLINPEVIAETDSMAVREEG 103
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLS P +A+V RPE+V++ +D++G + DL A QHE DHL+GILF + ++
Sbjct: 104 CLSLPNQYAEVIRPEAVRVRYQDMDGKAQEIEADDLLATCLQHEIDHLEGILFVDHLS 161
>gi|289523051|ref|ZP_06439905.1| peptide deformylase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289503594|gb|EFD24758.1| peptide deformylase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 165
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 74/117 (63%), Gaps = 6/117 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M++ MY DG+GL+APQVGIN+ + V + EG++ LVNP + + + EGC
Sbjct: 35 MYETMYANDGLGLAAPQVGINLMVAVVDY-----EGKKYTLVNPAILEKRGEQTG-REGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LSFP + D+ERPE VKI+A D NG ++++ S L AR F HE DHL G L + ++
Sbjct: 89 LSFPEVFEDIERPEIVKIEAFDENGEKYAIEASGLLARAFCHEIDHLHGRLIIDMVS 145
>gi|403050537|ref|ZP_10905021.1| peptide deformylase [Acinetobacter bereziniae LMG 1003]
gi|445424689|ref|ZP_21437024.1| peptide deformylase [Acinetobacter sp. WC-743]
gi|444754314|gb|ELW78935.1| peptide deformylase [Acinetobacter sp. WC-743]
Length = 176
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++QL+V + + + +V +NP++ + + YEEGC
Sbjct: 35 MFETMYEAPGIGLAATQVDQHIQLIVMD--LSENKDQPMVFINPKITPLTEETFSYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ VERP VKI+A D++G F + +L A QHE DHL G LF + ++
Sbjct: 93 LSVPQIYDKVERPSRVKIEAIDLDGKAFELEADELLAVCIQHEMDHLNGKLFVDYLSPLK 152
Query: 121 LDSIREQLE 129
RE++E
Sbjct: 153 RQRAREKVE 161
>gi|402757023|ref|ZP_10859279.1| peptide deformylase [Acinetobacter sp. NCTC 7422]
Length = 176
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++QL+V + E+ + +V +NP+V + PYEEGC
Sbjct: 35 MFETMYEAPGIGLAATQVDHHIQLIVMDISEEKNQP--MVFINPKVIPLTEDTQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ VERP VKI+A ++ G F + +L A QHE DHL G LF + ++
Sbjct: 93 LSVPQIYDKVERPSRVKIEAINLEGQAFELEADELLAVCIQHEMDHLNGKLFVDYLSPLK 152
Query: 121 LDSIREQLE 129
RE++E
Sbjct: 153 RQRAREKVE 161
>gi|374812525|ref|ZP_09716262.1| peptide deformylase [Treponema primitia ZAS-1]
Length = 162
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 77/129 (59%), Gaps = 4/129 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + M+++ G+GL+ PQVG ++ V + G+ V +NP + S + + EEGC
Sbjct: 32 MIETMHQSKGVGLAGPQVGFMKRIFVIHIEGDVPR----VFINPSIVATSQETVKLEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI ADV RPE+VKI A + G F++ + ARV HE+DHL+G LF +R+ +
Sbjct: 88 LSLPGIWADVVRPETVKIQAWNEKGRPFTMETDGILARVILHEYDHLEGTLFIDRIPESR 147
Query: 121 LDSIREQLE 129
+ I +LE
Sbjct: 148 RNKILAKLE 156
>gi|333379106|ref|ZP_08470830.1| polypeptide deformylase [Dysgonomonas mossii DSM 22836]
gi|332885374|gb|EGK05623.1| polypeptide deformylase [Dysgonomonas mossii DSM 22836]
Length = 187
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 80/133 (60%), Gaps = 10/133 (7%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGE---RGEGEEIVLVNPRVNKYSNKMIP 55
MF+ MY DGIGL+APQ+G+ ++L V + P+ E + G + V +NPR+ + S + +
Sbjct: 34 MFETMYNADGIGLAAPQIGLAIRLFVIDLEPLAEDEPKYAGFKKVFINPRIVEESGEPVK 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
EEGCLS PGI+ VER E ++I D N D AR QHE+DH++G+LF
Sbjct: 94 LEEGCLSIPGINEMVERKERIRIQYLDENFVAHDEVYEDFFARCIQHEYDHIEGVLFV-- 151
Query: 116 MTDDVLDSIREQL 128
D++ IR+QL
Sbjct: 152 ---DLISGIRKQL 161
>gi|225552226|ref|ZP_03773166.1| peptide deformylase [Borrelia sp. SV1]
gi|225371224|gb|EEH00654.1| peptide deformylase [Borrelia sp. SV1]
Length = 165
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E +V +NP + + S ++ Y+EGC
Sbjct: 32 MIELMDISGGVGLAAPQVGLDLALFV---VRENKMARPLVFINPSIIETSYELSSYKEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
LS PG++ D+ RP++V I+ D NG F++ SD AR+ QHE DHL G+LF +
Sbjct: 89 LSIPGVYYDLMRPKAVVINFHDENGKSFTIENSDFLARIIQHEMDHLNGVLFID 142
>gi|330444327|ref|YP_004377313.1| peptide deformylase [Chlamydophila pecorum E58]
gi|328807437|gb|AEB41610.1| peptide deformylase [Chlamydophila pecorum E58]
Length = 186
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M++ M G+GL+APQ+G ++ L V GE +GE I V +NP ++ S ++
Sbjct: 34 MYETMIAHKGVGLAAPQIGKSLSLFVMCVEGETPDGELIFCDFPKVFINPVLSSPSEHLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
EGCLS PG+ +V RP+ V + A +++G +FS +L PAR+ HE DHL GIL+ +
Sbjct: 94 IAYEGCLSIPGLRGEVFRPDRVTVTAMNLDGQKFSETLEGFPARIVMHETDHLHGILYID 153
Query: 115 RMTD 118
RM +
Sbjct: 154 RMEE 157
>gi|220903297|ref|YP_002478609.1| peptide deformylase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219867596|gb|ACL47931.1| peptide deformylase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 172
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ G+GL+APQVG N++++V +P ++ E VL+NP + ++I +EGC
Sbjct: 34 MLETMYEAPGVGLAAPQVGRNIRMLVMDPSAQKDERNPRVLINPVLTLSGEEIISEQEGC 93
Query: 61 LSFP-GIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P ADV+R V + A D++G L D A V QHE+DHL GILF ++++
Sbjct: 94 LSVPMNYRADVKRMSRVHLSATDLDGNAIEEDLEDFDAIVMQHEYDHLDGILFIDKVS 151
>gi|392407142|ref|YP_006443750.1| peptide deformylase [Anaerobaculum mobile DSM 13181]
gi|390620278|gb|AFM21425.1| peptide deformylase [Anaerobaculum mobile DSM 13181]
Length = 163
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 75/117 (64%), Gaps = 6/117 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY DG+GL+APQVGIN+ + V + EG + L+NP + + + + EEGC
Sbjct: 32 MFETMYANDGLGLAAPQVGINLMIAVVD-----HEGRKFTLINPVIIEARGEQVG-EEGC 85
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LSFP I +V+RPE+VK++A + G R+++ S + AR F HE DHL G L + ++
Sbjct: 86 LSFPEIFEEVKRPETVKVEACNEKGERYTIEASGMLARAFCHEIDHLHGRLIIDMVS 142
>gi|89052957|ref|YP_508408.1| peptide deformylase [Jannaschia sp. CCS1]
gi|88862506|gb|ABD53383.1| peptide deformylase [Jannaschia sp. CCS1]
Length = 174
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 75/131 (57%), Gaps = 10/131 (7%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEG---EEIVLVNPRVNKYSNKMIPYE 57
M MY GIGL+APQVG+ +L+V + E+G+ + + NP V S++M Y+
Sbjct: 34 MLSTMYDAPGIGLAAPQVGVGQRLIVLD--CEKGDDVTPRPLAMFNPEVIASSDEMNTYD 91
Query: 58 EGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
EGCLS P I+ADV RPE+V + D+NGA + L A QHE DHL+G LF
Sbjct: 92 EGCLSIPDIYADVTRPEAVTVRWMDVNGAEQEETFDGLWATCVQHEIDHLEGKLFI---- 147
Query: 118 DDVLDSIREQL 128
D L ++ QL
Sbjct: 148 -DYLSGLKRQL 157
>gi|195941804|ref|ZP_03087186.1| polypeptide deformylase (def) [Borrelia burgdorferi 80a]
gi|223889134|ref|ZP_03623723.1| peptide deformylase [Borrelia burgdorferi 64b]
gi|224533042|ref|ZP_03673648.1| peptide deformylase [Borrelia burgdorferi WI91-23]
gi|226320763|ref|ZP_03796319.1| peptide deformylase [Borrelia burgdorferi 29805]
gi|226322023|ref|ZP_03797548.1| peptide deformylase [Borrelia burgdorferi Bol26]
gi|223885383|gb|EEF56484.1| peptide deformylase [Borrelia burgdorferi 64b]
gi|224512036|gb|EEF82431.1| peptide deformylase [Borrelia burgdorferi WI91-23]
gi|226232613|gb|EEH31367.1| peptide deformylase [Borrelia burgdorferi Bol26]
gi|226233818|gb|EEH32543.1| peptide deformylase [Borrelia burgdorferi 29805]
Length = 165
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E +V +NP + + S ++ Y+EGC
Sbjct: 32 MIELMDISGGVGLAAPQVGLDLALFV---VRENKMARPLVFINPSIIETSYELSSYKEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
LS PG++ D+ RP++V I+ D NG F++ SD AR+ QHE DHL G+LF +
Sbjct: 89 LSIPGVYYDLMRPKAVVINFHDENGKSFTIENSDFLARIIQHEMDHLNGVLFID 142
>gi|410943115|ref|ZP_11374856.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter
frateurii NBRC 101659]
Length = 229
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 69/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MYK GIGL+APQVG+ ++ + + E E +VL+NP + S +M EEGC
Sbjct: 93 MFSAMYKAPGIGLAAPQVGLGMRFALVDVAEEDAPREPMVLINPEIVTDSEQMAVREEGC 152
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+V RPES+++ RD+ G L A QHE DHL G+LF + ++
Sbjct: 153 LSLPNQYAEVIRPESIRVRYRDLAGEIIERDADGLLATCIQHEMDHLDGVLFVDHLS 209
>gi|320105840|ref|YP_004181430.1| peptide deformylase [Terriglobus saanensis SP1PR4]
gi|319924361|gb|ADV81436.1| peptide deformylase [Terriglobus saanensis SP1PR4]
Length = 169
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY +GIGL+APQ+ I+ ++ + + ++ E+IVL+NP V K EEGC
Sbjct: 34 MFASMYAAEGIGLAAPQINISRRITIIDLSFQKRPEEKIVLINPEVIAVEGKQ-HEEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P I V R VK+ A+D G F V ++L AR FQHE DHL GILF +++
Sbjct: 93 LSLPDIREKVTRAAWVKVRAQDATGKHFEVEGTELLARAFQHEIDHLNGILFISKIS 149
>gi|104779338|ref|YP_605836.1| peptide deformylase [Pseudomonas entomophila L48]
gi|95108325|emb|CAK13019.1| peptide deformylase 1 [Pseudomonas entomophila L48]
Length = 168
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 80/129 (62%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ Q++V + +R E V +NP V + ++ M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKQVVVMDLSEDRSEPR--VFINPTVEELTHDMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP V++ A+D +G + + L A QHEFDHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPLRVRVKAQDRDGKPYELEAEGLLAVCVQHEFDHLNGKLFVDYLSQLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|387825724|ref|YP_005805177.1| peptide deformylase [Borrelia burgdorferi JD1]
gi|387826988|ref|YP_005806270.1| peptide deformylase [Borrelia burgdorferi N40]
gi|312148406|gb|ADQ31065.1| peptide deformylase [Borrelia burgdorferi JD1]
gi|312149552|gb|ADQ29623.1| peptide deformylase [Borrelia burgdorferi N40]
Length = 165
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 74/114 (64%), Gaps = 3/114 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E +V +NP + + S ++ Y+EGC
Sbjct: 32 MIELMDISGGVGLAAPQVGLDLALFV---VRENKMARPLVFINPSIIETSYELSSYKEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
LS PG++ D+ RP++V I+ D NG F++ SD AR+ QHE DHL G+LF +
Sbjct: 89 LSIPGVYYDLMRPKAVVINFHDENGKSFTIENSDFLARIIQHEMDHLNGVLFID 142
>gi|428220446|ref|YP_007104616.1| peptide deformylase [Synechococcus sp. PCC 7502]
gi|427993786|gb|AFY72481.1| peptide deformylase [Synechococcus sp. PCC 7502]
Length = 189
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 73/120 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +GIGL+APQVGI+ Q++V + + ++L+NP + +I EEGC
Sbjct: 49 MLQTMYSDNGIGLAAPQVGIHKQIIVVDCEPDNESAPPLILINPELKSSGGDIITGEEGC 108
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + DV+RP+ + ++ RD G +++ + ARV QHE DHL G++F +R+ + +
Sbjct: 109 LSVPDVFLDVQRPDQITVNFRDEEGKPKTLTTDGILARVIQHELDHLNGVMFVDRVQNAI 168
>gi|383786373|ref|YP_005470942.1| peptide deformylase [Fervidobacterium pennivorans DSM 9078]
gi|383109220|gb|AFG34823.1| peptide deformylase [Fervidobacterium pennivorans DSM 9078]
Length = 169
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 75/114 (65%), Gaps = 5/114 (4%)
Query: 4 VMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSF 63
MY DG+GL+APQVGI+++ + G+G ++V VNP++ ++SN+ EEGCLS
Sbjct: 34 TMYTEDGVGLAAPQVGISLRFFAMDD----GKGFKVV-VNPQILEHSNEKEVGEEGCLSL 88
Query: 64 PGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
PG+ ADVER + +++ + NG L D AR+FQHE+DHL G+LF + ++
Sbjct: 89 PGVFADVERYKWIRVKYQTENGDWKEELLEDYSARIFQHEYDHLDGVLFIDHLS 142
>gi|398891391|ref|ZP_10644767.1| peptide deformylase [Pseudomonas sp. GM55]
gi|398187072|gb|EJM74426.1| peptide deformylase [Pseudomonas sp. GM55]
Length = 168
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 81/129 (62%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP++ +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRTEPR--VFINPKLETLTDEMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VK+ A D +G + + DL A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQRVKVKALDRDGQPYELIAEDLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|374299878|ref|YP_005051517.1| Peptide deformylase [Desulfovibrio africanus str. Walvis Bay]
gi|332552814|gb|EGJ49858.1| Peptide deformylase [Desulfovibrio africanus str. Walvis Bay]
Length = 182
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+APQVG +L+V + G + VLVNP++ K++ EEGC
Sbjct: 34 MAETMYTNEGIGLAAPQVGECCRLVVIDITGPDKREDLRVLVNPKITAAEGKVVS-EEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS G +DV R E V ++A D++G S+ L A QHE DHL G+LF +R++
Sbjct: 93 LSVSGYRSDVARSEKVTVEATDLDGKPLSIEADGLLAVCLQHELDHLDGVLFIDRIS 149
>gi|260554281|ref|ZP_05826531.1| peptide deformylase 1 [Acinetobacter sp. RUH2624]
gi|424057319|ref|ZP_17794836.1| peptide deformylase [Acinetobacter nosocomialis Ab22222]
gi|425739180|ref|ZP_18857390.1| peptide deformylase [Acinetobacter baumannii WC-487]
gi|445439125|ref|ZP_21441542.1| peptide deformylase [Acinetobacter baumannii OIFC021]
gi|260404590|gb|EEW98110.1| peptide deformylase 1 [Acinetobacter sp. RUH2624]
gi|407440852|gb|EKF47369.1| peptide deformylase [Acinetobacter nosocomialis Ab22222]
gi|425497074|gb|EKU63187.1| peptide deformylase [Acinetobacter baumannii WC-487]
gi|444752434|gb|ELW77119.1| peptide deformylase [Acinetobacter baumannii OIFC021]
Length = 176
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++QL+V + + E +V +NP++ + + PYEEGC
Sbjct: 35 MFETMYAAPGIGLAASQVDRHIQLIVMD--LSESKDEPMVFINPKITPLTEETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ V+RP VKI+A ++ G F + L A QHE DHL+G LF + ++
Sbjct: 93 LSVPQIYDKVDRPSRVKIEAINLEGQAFEIEADGLLAVCIQHEMDHLKGKLFVDYLSPLK 152
Query: 121 LDSIREQLE 129
RE++E
Sbjct: 153 RQRAREKVE 161
>gi|422224061|ref|ZP_16383869.1| polypeptide deformylase [Pseudomonas avellanae BPIC 631]
gi|422589569|ref|ZP_16664230.1| peptide deformylase [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|422652050|ref|ZP_16714839.1| peptide deformylase [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|330876380|gb|EGH10529.1| peptide deformylase [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|330965122|gb|EGH65382.1| peptide deformylase [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|407992704|gb|EKG34275.1| polypeptide deformylase [Pseudomonas avellanae BPIC 631]
Length = 168
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E +V +NP + K +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEP--MVFINPEIEKLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V++ A D +G + + L A QHE DHL G LF + +++
Sbjct: 93 LSVPGFYENVDRPQKVRVKALDRDGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSNLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|402701205|ref|ZP_10849184.1| peptide deformylase [Pseudomonas fragi A22]
Length = 168
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 81/129 (62%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E +VL+NP + +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSEP--LVLINPELEMLTDEMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VKI A D +G F + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGYYENVDRPQRVKIKALDRDGKPFEMIAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|282896056|ref|ZP_06304082.1| Polypeptide deformylase [Raphidiopsis brookii D9]
gi|281198974|gb|EFA73849.1| Polypeptide deformylase [Raphidiopsis brookii D9]
Length = 218
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 81/128 (63%), Gaps = 2/128 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG+N QL+V + ++ E +VL+NP + + S+++ +EGC
Sbjct: 76 MLQTMYSEDGIGLAAPQVGVNKQLVVIDCNPDKPEIPPLVLINPVIKQVSSELCVAQEGC 135
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + +V+RP+ V+I +D G ++ +L AR HE DHL G++F +R+ + +
Sbjct: 136 LSIPKVFLEVKRPKIVEIAYKDEYGRPQTLKADNLLARCILHEMDHLNGVVFVDRVENSL 195
Query: 121 LDSIREQL 128
S+ E+L
Sbjct: 196 --SLTEEL 201
>gi|66043290|ref|YP_233131.1| peptide deformylase [Pseudomonas syringae pv. syringae B728a]
gi|422643832|ref|ZP_16706971.1| peptide deformylase [Pseudomonas syringae pv. maculicola str.
ES4326]
gi|422672606|ref|ZP_16731969.1| peptide deformylase [Pseudomonas syringae pv. aceris str. M302273]
gi|63253997|gb|AAY35093.1| peptide deformylase [Pseudomonas syringae pv. syringae B728a]
gi|330957385|gb|EGH57645.1| peptide deformylase [Pseudomonas syringae pv. maculicola str.
ES4326]
gi|330970343|gb|EGH70409.1| peptide deformylase [Pseudomonas syringae pv. aceris str. M302273]
Length = 168
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E +V +NP + K +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEP--MVFINPEIEKLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V++ A D +G + + L A QHE DHL G LF + +++
Sbjct: 93 LSVPGFYENVDRPQKVRVKALDRDGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSNLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|389721250|ref|ZP_10188004.1| peptide deformylase [Acinetobacter sp. HA]
gi|388609080|gb|EIM38274.1| peptide deformylase [Acinetobacter sp. HA]
Length = 176
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++QL+V + ++ + +V +NP++ + + PYEEGC
Sbjct: 35 MFETMYEAPGIGLAATQVDRHIQLIVMDLSEDKDQP--MVFINPKITPLTEETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ VERP VKI A ++ G F V L A QHE DHL G LF + ++
Sbjct: 93 LSVPQIYDKVERPSRVKIQAINLEGQAFEVEADGLLAVCIQHEMDHLNGKLFVDYLSPLK 152
Query: 121 LDSIREQLE 129
RE++E
Sbjct: 153 RQRAREKIE 161
>gi|257485584|ref|ZP_05639625.1| peptide deformylase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|289627009|ref|ZP_06459963.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. NCPPB
3681]
gi|289647926|ref|ZP_06479269.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 2250]
gi|422583065|ref|ZP_16658194.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|422595418|ref|ZP_16669706.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|422606582|ref|ZP_16678590.1| peptide deformylase [Pseudomonas syringae pv. mori str. 301020]
gi|422682534|ref|ZP_16740799.1| peptide deformylase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|330867901|gb|EGH02610.1| peptide deformylase [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330890232|gb|EGH22893.1| peptide deformylase [Pseudomonas syringae pv. mori str. 301020]
gi|330985723|gb|EGH83826.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331011873|gb|EGH91929.1| peptide deformylase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
Length = 168
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E +V +NP + K +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEP--MVFINPEIEKLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V++ A D +G + + L A QHE DHL G LF + +++
Sbjct: 93 LSVPGFYENVDRPQKVRVKALDRDGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSNLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|386853473|ref|YP_006202758.1| Peptide deformylase [Borrelia garinii BgVir]
gi|365193507|gb|AEW68405.1| Def [Borrelia garinii BgVir]
Length = 186
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 78/125 (62%), Gaps = 7/125 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E +V +NP + + S ++ Y+EGC
Sbjct: 53 MIELMDISGGVGLAAPQVGLDLSLFV---VRENRMARPLVFINPSITETSYELNSYKEGC 109
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFF----ERM 116
LS PG++ D+ RP+ + ++ D NG F++ SD AR+ QHE DHL GILF ER+
Sbjct: 110 LSIPGVYYDLMRPKGIVVNFYDENGKSFTIENSDFLARIIQHEMDHLNGILFIDYYEERI 169
Query: 117 TDDVL 121
+ +L
Sbjct: 170 KNKLL 174
>gi|237801646|ref|ZP_04590107.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331024505|gb|EGI04561.1| peptide deformylase [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 168
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E +V +NP + K +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEP--MVFINPEIEKLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V++ A D +G + + L A QHE DHL G LF + +++
Sbjct: 93 LSVPGFYENVDRPQKVRVKALDRDGKPYEMVAEGLLAICIQHECDHLNGKLFVDYLSNLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|282900896|ref|ZP_06308832.1| Formylmethionine deformylase [Cylindrospermopsis raciborskii
CS-505]
gi|281194234|gb|EFA69195.1| Formylmethionine deformylase [Cylindrospermopsis raciborskii
CS-505]
Length = 190
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 81/128 (63%), Gaps = 2/128 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQVG+N QL+V + ++ E ++L+NP + + S+++ +EGC
Sbjct: 48 MLQTMYSEDGIGLAAPQVGVNKQLVVIDCNPDKPEMPPLILINPVIKQVSSELCVAQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + +V+RP+ V+I +D G ++ +L AR HE DHL G++F +R+ + +
Sbjct: 108 LSIPKVFLEVKRPKIVEIAYKDEYGRPQTLKADNLLARCILHEMDHLNGVVFVDRVENSL 167
Query: 121 LDSIREQL 128
S+ E+L
Sbjct: 168 --SLTEEL 173
>gi|29840076|ref|NP_829182.1| peptide deformylase [Chlamydophila caviae GPIC]
gi|33301049|sp|Q823U4.1|DEF_CHLCV RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|29834424|gb|AAP05060.1| polypeptide deformylase [Chlamydophila caviae GPIC]
Length = 186
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M++ M G+GL+APQVG ++ L V GE EG+ I V +NP ++ S ++
Sbjct: 34 MYETMVAHKGVGLAAPQVGESLSLFVMCVEGETEEGDLIFCDFPKVYINPVLSNPSEDLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
EGCLS PG+ ADV RP+S+ + A +++G F+ L PAR+ HE DHL G+L+ +
Sbjct: 94 IGREGCLSIPGLRADVYRPQSITVTAVNLDGQEFTEHLEGFPARIIMHENDHLHGVLYID 153
Query: 115 RMTD 118
+M +
Sbjct: 154 KMEE 157
>gi|406876921|gb|EKD26328.1| hypothetical protein ACD_79C01255G0005 [uncultured bacterium]
Length = 174
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 72/117 (61%), Gaps = 3/117 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ +G+GL+APQVGI+ +++ + ERG VL+NP + K EEGC
Sbjct: 34 MIESMYQENGVGLAAPQVGISKRMIAIDAGEERGH--PFVLINPELIGTEGKATA-EEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LSFPGI+ +++R S+K+ D G S+S + L R HE DHL GILF ++M+
Sbjct: 91 LSFPGIYGNIQRAASLKVKGIDAEGKEKSLSFTGLECRAILHEIDHLDGILFIDKMS 147
>gi|169797633|ref|YP_001715426.1| peptide deformylase [Acinetobacter baumannii AYE]
gi|184156510|ref|YP_001844849.1| peptide deformylase [Acinetobacter baumannii ACICU]
gi|213155573|ref|YP_002317618.1| peptide deformylase [Acinetobacter baumannii AB0057]
gi|215484987|ref|YP_002327228.1| peptide deformylase [Acinetobacter baumannii AB307-0294]
gi|239503032|ref|ZP_04662342.1| peptide deformylase [Acinetobacter baumannii AB900]
gi|260557576|ref|ZP_05829790.1| peptide deformylase [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|301346868|ref|ZP_07227609.1| peptide deformylase [Acinetobacter baumannii AB056]
gi|301512296|ref|ZP_07237533.1| peptide deformylase [Acinetobacter baumannii AB058]
gi|301594510|ref|ZP_07239518.1| peptide deformylase [Acinetobacter baumannii AB059]
gi|332852665|ref|ZP_08434319.1| peptide deformylase [Acinetobacter baumannii 6013150]
gi|332869381|ref|ZP_08438759.1| peptide deformylase [Acinetobacter baumannii 6013113]
gi|332875644|ref|ZP_08443456.1| peptide deformylase [Acinetobacter baumannii 6014059]
gi|384130158|ref|YP_005512770.1| Peptide deformylase 1 [Acinetobacter baumannii 1656-2]
gi|384141439|ref|YP_005524149.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
binds Zn(II)) [Acinetobacter baumannii MDR-ZJ06]
gi|385235738|ref|YP_005797077.1| peptide deformylase [Acinetobacter baumannii TCDC-AB0715]
gi|387125603|ref|YP_006291485.1| peptide deformylase [Acinetobacter baumannii MDR-TJ]
gi|403673529|ref|ZP_10935824.1| peptide deformylase [Acinetobacter sp. NCTC 10304]
gi|407931077|ref|YP_006846720.1| peptide deformylase [Acinetobacter baumannii TYTH-1]
gi|416146390|ref|ZP_11601094.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii AB210]
gi|417546097|ref|ZP_12197183.1| peptide deformylase [Acinetobacter baumannii OIFC032]
gi|417548197|ref|ZP_12199278.1| peptide deformylase [Acinetobacter baumannii Naval-18]
gi|417553466|ref|ZP_12204535.1| peptide deformylase [Acinetobacter baumannii Naval-81]
gi|417562528|ref|ZP_12213407.1| peptide deformylase [Acinetobacter baumannii OIFC137]
gi|417566767|ref|ZP_12217639.1| peptide deformylase [Acinetobacter baumannii OIFC143]
gi|417570941|ref|ZP_12221798.1| peptide deformylase [Acinetobacter baumannii OIFC189]
gi|417574855|ref|ZP_12225708.1| peptide deformylase [Acinetobacter baumannii Canada BC-5]
gi|417576185|ref|ZP_12227030.1| peptide deformylase [Acinetobacter baumannii Naval-17]
gi|417870153|ref|ZP_12515124.1| peptide deformylase [Acinetobacter baumannii ABNIH1]
gi|417875941|ref|ZP_12520737.1| peptide deformylase [Acinetobacter baumannii ABNIH2]
gi|417877304|ref|ZP_12522029.1| peptide deformylase [Acinetobacter baumannii ABNIH3]
gi|417883947|ref|ZP_12528156.1| peptide deformylase [Acinetobacter baumannii ABNIH4]
gi|421199564|ref|ZP_15656725.1| peptide deformylase [Acinetobacter baumannii OIFC109]
gi|421201880|ref|ZP_15659034.1| peptide deformylase [Acinetobacter baumannii AC12]
gi|421456710|ref|ZP_15906048.1| peptide deformylase [Acinetobacter baumannii IS-123]
gi|421534158|ref|ZP_15980434.1| peptide deformylase [Acinetobacter baumannii AC30]
gi|421622616|ref|ZP_16063517.1| peptide deformylase [Acinetobacter baumannii OIFC074]
gi|421624430|ref|ZP_16065302.1| peptide deformylase [Acinetobacter baumannii OIFC098]
gi|421631481|ref|ZP_16072150.1| peptide deformylase [Acinetobacter baumannii OIFC180]
gi|421633196|ref|ZP_16073834.1| peptide deformylase [Acinetobacter baumannii Naval-13]
gi|421642081|ref|ZP_16082608.1| peptide deformylase [Acinetobacter baumannii IS-235]
gi|421646589|ref|ZP_16087036.1| peptide deformylase [Acinetobacter baumannii IS-251]
gi|421650626|ref|ZP_16091000.1| peptide deformylase [Acinetobacter baumannii OIFC0162]
gi|421656910|ref|ZP_16097197.1| peptide deformylase [Acinetobacter baumannii Naval-72]
gi|421657875|ref|ZP_16098122.1| peptide deformylase [Acinetobacter baumannii Naval-83]
gi|421663347|ref|ZP_16103495.1| peptide deformylase [Acinetobacter baumannii OIFC110]
gi|421666529|ref|ZP_16106619.1| peptide deformylase [Acinetobacter baumannii OIFC087]
gi|421672013|ref|ZP_16111980.1| peptide deformylase [Acinetobacter baumannii OIFC099]
gi|421672896|ref|ZP_16112847.1| peptide deformylase [Acinetobacter baumannii OIFC065]
gi|421679002|ref|ZP_16118882.1| peptide deformylase [Acinetobacter baumannii OIFC111]
gi|421689043|ref|ZP_16128729.1| peptide deformylase [Acinetobacter baumannii IS-143]
gi|421690063|ref|ZP_16129735.1| peptide deformylase [Acinetobacter baumannii IS-116]
gi|421697313|ref|ZP_16136877.1| peptide deformylase [Acinetobacter baumannii WC-692]
gi|421700865|ref|ZP_16140377.1| peptide deformylase [Acinetobacter baumannii IS-58]
gi|421701788|ref|ZP_16141277.1| peptide deformylase [Acinetobacter baumannii ZWS1122]
gi|421705600|ref|ZP_16145026.1| peptide deformylase [Acinetobacter baumannii ZWS1219]
gi|421788378|ref|ZP_16224680.1| peptide deformylase [Acinetobacter baumannii Naval-82]
gi|421793879|ref|ZP_16229995.1| peptide deformylase [Acinetobacter baumannii Naval-2]
gi|421798466|ref|ZP_16234487.1| peptide deformylase [Acinetobacter baumannii Naval-21]
gi|421801872|ref|ZP_16237827.1| peptide deformylase [Acinetobacter baumannii Canada BC1]
gi|421805266|ref|ZP_16241155.1| peptide deformylase [Acinetobacter baumannii WC-A-694]
gi|421810049|ref|ZP_16245875.1| peptide deformylase [Acinetobacter baumannii OIFC035]
gi|424054069|ref|ZP_17791599.1| peptide deformylase [Acinetobacter baumannii Ab11111]
gi|424061496|ref|ZP_17798985.1| peptide deformylase [Acinetobacter baumannii Ab33333]
gi|424065177|ref|ZP_17802661.1| peptide deformylase [Acinetobacter baumannii Ab44444]
gi|425750585|ref|ZP_18868546.1| peptide deformylase [Acinetobacter baumannii WC-348]
gi|425753517|ref|ZP_18871400.1| peptide deformylase [Acinetobacter baumannii Naval-113]
gi|445398280|ref|ZP_21429572.1| peptide deformylase [Acinetobacter baumannii Naval-57]
gi|445444131|ref|ZP_21442852.1| peptide deformylase [Acinetobacter baumannii WC-A-92]
gi|445459468|ref|ZP_21447574.1| peptide deformylase [Acinetobacter baumannii OIFC047]
gi|445464604|ref|ZP_21449656.1| peptide deformylase [Acinetobacter baumannii OIFC338]
gi|445482999|ref|ZP_21456337.1| peptide deformylase [Acinetobacter baumannii Naval-78]
gi|445491578|ref|ZP_21459809.1| peptide deformylase [Acinetobacter baumannii AA-014]
gi|169150560|emb|CAM88469.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
binds Zn(II)) [Acinetobacter baumannii AYE]
gi|183208104|gb|ACC55502.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii ACICU]
gi|193076056|gb|ABO10651.2| Zinc(II) binding peptide deformylase 1 [Acinetobacter baumannii
ATCC 17978]
gi|213054733|gb|ACJ39635.1| peptide deformylase [Acinetobacter baumannii AB0057]
gi|213986809|gb|ACJ57108.1| peptide deformylase [Acinetobacter baumannii AB307-0294]
gi|260408749|gb|EEX02053.1| peptide deformylase [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|322506378|gb|ADX01832.1| Peptide deformylase 1 [Acinetobacter baumannii 1656-2]
gi|323516246|gb|ADX90627.1| peptide deformylase [Acinetobacter baumannii TCDC-AB0715]
gi|332729133|gb|EGJ60480.1| peptide deformylase [Acinetobacter baumannii 6013150]
gi|332732799|gb|EGJ64015.1| peptide deformylase [Acinetobacter baumannii 6013113]
gi|332736217|gb|EGJ67232.1| peptide deformylase [Acinetobacter baumannii 6014059]
gi|333366104|gb|EGK48118.1| N-formylmethionyl-tRNA deformylase [Acinetobacter baumannii AB210]
gi|342224268|gb|EGT89311.1| peptide deformylase [Acinetobacter baumannii ABNIH2]
gi|342228546|gb|EGT93431.1| peptide deformylase [Acinetobacter baumannii ABNIH1]
gi|342234843|gb|EGT99476.1| peptide deformylase [Acinetobacter baumannii ABNIH4]
gi|342236116|gb|EGU00659.1| peptide deformylase [Acinetobacter baumannii ABNIH3]
gi|347591932|gb|AEP04653.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
binds Zn(II)) [Acinetobacter baumannii MDR-ZJ06]
gi|385880095|gb|AFI97190.1| peptide deformylase [Acinetobacter baumannii MDR-TJ]
gi|395525110|gb|EJG13199.1| peptide deformylase [Acinetobacter baumannii OIFC137]
gi|395551389|gb|EJG17398.1| peptide deformylase [Acinetobacter baumannii OIFC189]
gi|395552439|gb|EJG18447.1| peptide deformylase [Acinetobacter baumannii OIFC143]
gi|395564561|gb|EJG26212.1| peptide deformylase [Acinetobacter baumannii OIFC109]
gi|395569406|gb|EJG30068.1| peptide deformylase [Acinetobacter baumannii Naval-17]
gi|398328488|gb|EJN44612.1| peptide deformylase [Acinetobacter baumannii AC12]
gi|400205588|gb|EJO36568.1| peptide deformylase [Acinetobacter baumannii Canada BC-5]
gi|400210414|gb|EJO41383.1| peptide deformylase [Acinetobacter baumannii IS-123]
gi|400383985|gb|EJP42663.1| peptide deformylase [Acinetobacter baumannii OIFC032]
gi|400388496|gb|EJP51568.1| peptide deformylase [Acinetobacter baumannii Naval-18]
gi|400389883|gb|EJP56930.1| peptide deformylase [Acinetobacter baumannii Naval-81]
gi|404558529|gb|EKA63811.1| peptide deformylase [Acinetobacter baumannii WC-692]
gi|404558935|gb|EKA64208.1| peptide deformylase [Acinetobacter baumannii IS-143]
gi|404565026|gb|EKA70200.1| peptide deformylase [Acinetobacter baumannii IS-116]
gi|404569150|gb|EKA74244.1| peptide deformylase [Acinetobacter baumannii IS-58]
gi|404666373|gb|EKB34320.1| peptide deformylase [Acinetobacter baumannii Ab33333]
gi|404666624|gb|EKB34555.1| peptide deformylase [Acinetobacter baumannii Ab11111]
gi|404672627|gb|EKB40442.1| peptide deformylase [Acinetobacter baumannii Ab44444]
gi|407195638|gb|EKE66767.1| peptide deformylase [Acinetobacter baumannii ZWS1219]
gi|407195941|gb|EKE67062.1| peptide deformylase [Acinetobacter baumannii ZWS1122]
gi|407899658|gb|AFU36489.1| peptide deformylase [Acinetobacter baumannii TYTH-1]
gi|408503025|gb|EKK04802.1| peptide deformylase [Acinetobacter baumannii Naval-72]
gi|408509873|gb|EKK11540.1| peptide deformylase [Acinetobacter baumannii OIFC0162]
gi|408513813|gb|EKK15426.1| peptide deformylase [Acinetobacter baumannii IS-235]
gi|408517412|gb|EKK18955.1| peptide deformylase [Acinetobacter baumannii IS-251]
gi|408692753|gb|EKL38367.1| peptide deformylase [Acinetobacter baumannii OIFC180]
gi|408694968|gb|EKL40528.1| peptide deformylase [Acinetobacter baumannii OIFC074]
gi|408701606|gb|EKL47031.1| peptide deformylase [Acinetobacter baumannii OIFC098]
gi|408706871|gb|EKL52168.1| peptide deformylase [Acinetobacter baumannii Naval-13]
gi|408711476|gb|EKL56683.1| peptide deformylase [Acinetobacter baumannii Naval-83]
gi|408713452|gb|EKL58619.1| peptide deformylase [Acinetobacter baumannii OIFC110]
gi|409987782|gb|EKO43959.1| peptide deformylase [Acinetobacter baumannii AC30]
gi|410380947|gb|EKP33523.1| peptide deformylase [Acinetobacter baumannii OIFC099]
gi|410387563|gb|EKP40008.1| peptide deformylase [Acinetobacter baumannii OIFC087]
gi|410387821|gb|EKP40262.1| peptide deformylase [Acinetobacter baumannii OIFC065]
gi|410391693|gb|EKP44059.1| peptide deformylase [Acinetobacter baumannii OIFC111]
gi|410394058|gb|EKP46397.1| peptide deformylase [Acinetobacter baumannii Naval-21]
gi|410396120|gb|EKP48404.1| peptide deformylase [Acinetobacter baumannii Naval-2]
gi|410403219|gb|EKP55317.1| peptide deformylase [Acinetobacter baumannii Naval-82]
gi|410404686|gb|EKP56748.1| peptide deformylase [Acinetobacter baumannii Canada BC1]
gi|410409079|gb|EKP61013.1| peptide deformylase [Acinetobacter baumannii WC-A-694]
gi|410413394|gb|EKP65221.1| peptide deformylase [Acinetobacter baumannii OIFC035]
gi|425485763|gb|EKU52144.1| peptide deformylase [Acinetobacter baumannii WC-348]
gi|425497840|gb|EKU63930.1| peptide deformylase [Acinetobacter baumannii Naval-113]
gi|444762080|gb|ELW86452.1| peptide deformylase [Acinetobacter baumannii WC-A-92]
gi|444764116|gb|ELW88439.1| peptide deformylase [Acinetobacter baumannii AA-014]
gi|444768939|gb|ELW93139.1| peptide deformylase [Acinetobacter baumannii Naval-78]
gi|444773911|gb|ELW98001.1| peptide deformylase [Acinetobacter baumannii OIFC047]
gi|444779492|gb|ELX03475.1| peptide deformylase [Acinetobacter baumannii OIFC338]
gi|444783785|gb|ELX07623.1| peptide deformylase [Acinetobacter baumannii Naval-57]
gi|452949984|gb|EME55449.1| peptide deformylase [Acinetobacter baumannii MSP4-16]
Length = 176
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++QL+V + + E +V +NP+V + + PYEEGC
Sbjct: 35 MFETMYAAPGIGLAASQVDRHIQLIVMD--LSESKDEPMVFINPKVTPLTEETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ V+RP VKI+A ++ G F + L A QHE DHL G LF + ++
Sbjct: 93 LSVPQIYDKVDRPSRVKIEAINLEGQAFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLK 152
Query: 121 LDSIREQLE 129
RE++E
Sbjct: 153 RQRAREKVE 161
>gi|148241454|ref|YP_001226611.1| peptide deformylase [Synechococcus sp. RCC307]
gi|166198524|sp|A5GQU9.1|DEF_SYNR3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|147849764|emb|CAK27258.1| Peptide deformylase [Synechococcus sp. RCC307]
Length = 201
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 69/120 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+APQVG++ QL+V + E +VL+NP + S + YEEGC
Sbjct: 62 MLRSMYAAHGIGLAAPQVGVHQQLLVIDLDPEEAANPPLVLINPEIVATSGALDTYEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ +V RP V + RD G L AR HE DHL G+LF +R++D++
Sbjct: 122 LSIPGVYLNVVRPSQVDVKYRDELGRPQRRKADGLMARCILHEMDHLNGVLFVDRVSDEL 181
>gi|329118894|ref|ZP_08247589.1| peptide deformylase [Neisseria bacilliformis ATCC BAA-1200]
gi|327464922|gb|EGF11212.1| peptide deformylase [Neisseria bacilliformis ATCC BAA-1200]
Length = 167
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 78/129 (60%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + ER E V +NP V + N YEEGC
Sbjct: 35 MFETMYEARGIGLAATQVDVHERVVVMDLSEERNEPR--VFINP-VITHKNGETTYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+ V R E+V ++A + NG +F++ L A QHE DHL GI+F ER++
Sbjct: 92 LSVPGIYDTVTRAETVTVEALNENGEKFTLEADGLLAICVQHELDHLMGIVFVERLSQLK 151
Query: 121 LDSIREQLE 129
IR +L+
Sbjct: 152 QGRIRTKLK 160
>gi|62184939|ref|YP_219724.1| peptide deformylase [Chlamydophila abortus S26/3]
gi|81312889|sp|Q5L6G8.1|DEF_CHLAB RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|62148006|emb|CAH63757.1| peptide deformylase [Chlamydophila abortus S26/3]
Length = 184
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 6/124 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M++ M G+GL+APQVG +V L V GE +G+ I V +NP ++ S ++
Sbjct: 34 MYETMVAHKGVGLAAPQVGESVSLFVMCVEGETEDGDLIFCDFPKVYINPVLSNVSEDLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
EGCLS PG+ ADV RP S+ + A +++G F+ L PAR+ HE DHL GIL+ +
Sbjct: 94 LGREGCLSIPGLRADVYRPRSITVKAINLDGQEFTEHLEGFPARIVMHENDHLNGILYID 153
Query: 115 RMTD 118
+M +
Sbjct: 154 KMEE 157
>gi|424824989|ref|ZP_18249976.1| peptide deformylase [Chlamydophila abortus LLG]
gi|333410088|gb|EGK69075.1| peptide deformylase [Chlamydophila abortus LLG]
Length = 184
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 6/124 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M++ M G+GL+APQVG +V L V GE +G+ I V +NP ++ S ++
Sbjct: 34 MYETMVAHKGVGLAAPQVGESVSLFVMCVEGETEDGDLIFCDFPKVYINPVLSNVSEDLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
EGCLS PG+ ADV RP S+ + A +++G F+ L PAR+ HE DHL GIL+ +
Sbjct: 94 LGREGCLSIPGLRADVYRPRSITVKAINLDGQEFTEHLEGFPARIVMHENDHLNGILYID 153
Query: 115 RMTD 118
+M +
Sbjct: 154 KMEE 157
>gi|262091759|gb|ACY25348.1| peptide deformylase [uncultured actinobacterium]
Length = 180
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 76/119 (63%), Gaps = 6/119 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF VMY+ G+GL+ PQ+G+ Q+ V++ + + V++NP++ + S + + Y+EGC
Sbjct: 41 MFRVMYQAPGLGLAGPQIGVQKQIFVYDV-----DDDPQVIINPKIVESSGEWV-YDEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
LS PG++ ++ RP+ V + + G + +L AR+FQHE DHLQG+L F+RM D
Sbjct: 95 LSIPGLYVEMLRPKKVLVSGFTLEGDEVQIEADELLARLFQHEIDHLQGVLMFDRMLPD 153
>gi|343127387|ref|YP_004777318.1| peptide deformylase [Borrelia bissettii DN127]
gi|342222075|gb|AEL18253.1| peptide deformylase [Borrelia bissettii DN127]
Length = 165
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 75/114 (65%), Gaps = 3/114 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E + ++ +NP + + S ++ Y+EGC
Sbjct: 32 MIELMDISGGVGLAAPQVGLDLSLFV---VRENKMAKPLIFINPSIIETSYELSSYKEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
LS PG++ DV RP++V ++ D NG F++ S+ AR+ QHE DHL G+LF +
Sbjct: 89 LSIPGVYYDVMRPKAVVVNFHDENGKSFTIENSNFLARIIQHEMDHLNGVLFID 142
>gi|347761822|ref|YP_004869383.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconacetobacter
xylinus NBRC 3288]
gi|347580792|dbj|BAK85013.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconacetobacter
xylinus NBRC 3288]
Length = 180
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 71/117 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY+ GIGL+APQVG+ ++ + + + IVL+NP V ++ M EEGC
Sbjct: 45 MFSAMYQAPGIGLAAPQVGLGMRFAIVDVSDKDEPRNPIVLINPEVIAETDSMAAREEGC 104
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+V RPE+V++ +D+ G + DL A QHE DHL+GILF + ++
Sbjct: 105 LSLPNQYAEVIRPEAVRVRYQDMEGKVQELEADDLLATCLQHEIDHLEGILFVDHLS 161
>gi|126640269|ref|YP_001083253.1| Zinc(II) binding peptide deformylase 1 [Acinetobacter baumannii
ATCC 17978]
Length = 142
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++QL+V + + E +V +NP+V + + PYEEGC
Sbjct: 1 MFETMYAAPGIGLAASQVDRHIQLIVMD--LSESKDEPMVFINPKVTPLTEETQPYEEGC 58
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ V+RP VKI+A ++ G F + L A QHE DHL G LF + ++
Sbjct: 59 LSVPQIYDKVDRPSRVKIEAINLEGQAFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLK 118
Query: 121 LDSIREQLE 129
RE++E
Sbjct: 119 RQRAREKVE 127
>gi|225549344|ref|ZP_03770317.1| peptide deformylase [Borrelia burgdorferi 94a]
gi|365992282|ref|NP_212199.2| peptide deformylase [Borrelia burgdorferi B31]
gi|384872328|sp|O51092.2|DEF_BORBU RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|225370202|gb|EEG99642.1| peptide deformylase [Borrelia burgdorferi 94a]
gi|356609280|gb|AAC66445.2| peptide deformylase [Borrelia burgdorferi B31]
Length = 165
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E +V +NP + + S + Y+EGC
Sbjct: 32 MIELMDISGGVGLAAPQVGLDLALFV---VRENKMARPLVFINPSIIETSYEFSSYKEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
LS PG++ D+ RP++V I+ D NG F++ SD AR+ QHE DHL G+LF +
Sbjct: 89 LSIPGVYYDLMRPKAVVINFHDENGKSFTIENSDFLARIIQHEMDHLNGVLFID 142
>gi|398349954|ref|YP_006395418.1| peptide deformylase Def [Sinorhizobium fredii USDA 257]
gi|390125280|gb|AFL48661.1| peptide deformylase Def [Sinorhizobium fredii USDA 257]
Length = 174
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 72/117 (61%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +L+V + E E + +V +NP++ + S + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRLLVLDVSKEGEEKKPLVFINPKIVRSSEERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP ++ ++ RD +G SV L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAAITVEFRDRDGKEQSVEADGLLATCLQHEIDHLNGVLFIDYIS 151
>gi|440743505|ref|ZP_20922814.1| peptide deformylase [Pseudomonas syringae BRIP39023]
gi|298160851|gb|EFI01868.1| Peptide deformylase [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|440375270|gb|ELQ11980.1| peptide deformylase [Pseudomonas syringae BRIP39023]
Length = 168
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 81/129 (62%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + K +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEPR--VFINPEIEKLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V++ A D +G + + L A QHE DHL G LF + +++
Sbjct: 93 LSVPGFYENVDRPQKVRVKALDRDGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSNLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|221217366|ref|ZP_03588837.1| peptide deformylase [Borrelia burgdorferi 72a]
gi|224533957|ref|ZP_03674542.1| peptide deformylase [Borrelia burgdorferi CA-11.2a]
gi|225549696|ref|ZP_03770661.1| peptide deformylase [Borrelia burgdorferi 118a]
gi|221192644|gb|EEE18860.1| peptide deformylase [Borrelia burgdorferi 72a]
gi|224512960|gb|EEF83326.1| peptide deformylase [Borrelia burgdorferi CA-11.2a]
gi|225369656|gb|EEG99104.1| peptide deformylase [Borrelia burgdorferi 118a]
Length = 165
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E +V +NP + + S + Y+EGC
Sbjct: 32 MIELMDISGGVGLAAPQVGLDLALFV---VRENKMARPLVFINPSIIETSYEFSSYKEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
LS PG++ D+ RP++V I+ D NG F++ SD AR+ QHE DHL G+LF +
Sbjct: 89 LSIPGVYYDLMRPKAVVINFHDENGKSFTIENSDFLARIIQHEMDHLNGVLFID 142
>gi|406036448|ref|ZP_11043812.1| peptide deformylase [Acinetobacter parvus DSM 16617 = CIP 108168]
Length = 176
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+A QV ++QL+V + E+ + +V +NP+V + + PYEEGC
Sbjct: 35 MLETMYEAPGIGLAATQVDHHIQLIVMDLSEEKNQP--MVFINPKVTPLTQETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ V RP VKI+A +++G F + +L A QHE DHL G LF + ++
Sbjct: 93 LSVPQIYDKVARPSRVKIEAINLDGQAFELEADELLAVCIQHEMDHLNGKLFVDYLSPLK 152
Query: 121 LDSIREQLE 129
RE++E
Sbjct: 153 RQRAREKVE 161
>gi|365876377|ref|ZP_09415899.1| peptide deformylase [Elizabethkingia anophelis Ag1]
gi|442589683|ref|ZP_21008490.1| peptide deformylase [Elizabethkingia anophelis R26]
gi|365755989|gb|EHM97906.1| peptide deformylase [Elizabethkingia anophelis Ag1]
gi|442560571|gb|ELR77799.1| peptide deformylase [Elizabethkingia anophelis R26]
Length = 190
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 80/128 (62%), Gaps = 11/128 (8%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGEGEEI---------VLVNPRVNKY 49
MF+ MY+ GIGL+APQ+G++++L V + P+ E + +I V +N ++ +Y
Sbjct: 34 MFETMYQAHGIGLAAPQIGLDIRLFVIDVRPLAEDEDYLDIREELKDFKKVFINAKILEY 93
Query: 50 SNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQG 109
+ + EGCLS P + DV RPE++ ++ D N + + + SD+ ARV QHE+DH+ G
Sbjct: 94 EGEPWKFNEGCLSIPDVREDVSRPETITMEYYDENFVKHTETFSDIRARVIQHEYDHIDG 153
Query: 110 ILFFERMT 117
+LF ++++
Sbjct: 154 VLFTDKLS 161
>gi|407460496|ref|YP_006738271.1| peptide deformylase [Chlamydia psittaci WC]
gi|405787261|gb|AFS26005.1| peptide deformylase [Chlamydia psittaci WC]
Length = 184
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 74/122 (60%), Gaps = 6/122 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M++ M G+GL+APQVG +V+L V GE +G+ I V +NP ++ S ++
Sbjct: 34 MYETMVAHKGVGLAAPQVGESVRLFVMCVEGETEDGDLIFCDFPKVYINPVLSDVSEDLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
EGCLS PG+ ADV RP S+ + A +++G F+ L PAR+ HE DHL G+L+ +
Sbjct: 94 LGREGCLSIPGLRADVYRPRSITVKAINLDGQEFTEHLEGFPARIIMHENDHLNGVLYID 153
Query: 115 RM 116
+M
Sbjct: 154 KM 155
>gi|310828897|ref|YP_003961254.1| peptide deformylase [Eubacterium limosum KIST612]
gi|308740631|gb|ADO38291.1| peptide deformylase [Eubacterium limosum KIST612]
Length = 146
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY +G+GL+APQVG+ QL+V + GEG + L+NP + K ++ EE C
Sbjct: 35 MLDTMYAEEGVGLAAPQVGVLKQLIVIDI----GEGP-VTLINPEITKQEGSVVE-EEAC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LSFP VERPE V ++ D+NG R+ + L AR HE DHL GI+F +R+
Sbjct: 89 LSFPDRSGKVERPEFVTVEYTDLNGDRYEMECQGLMARAVCHEVDHLNGIVFLDRV 144
>gi|329942666|ref|ZP_08291445.1| peptide deformylase [Chlamydophila psittaci Cal10]
gi|332287261|ref|YP_004422162.1| peptide deformylase [Chlamydophila psittaci 6BC]
gi|384450413|ref|YP_005663013.1| peptide deformylase [Chlamydophila psittaci 6BC]
gi|384451414|ref|YP_005664012.1| peptide deformylase [Chlamydophila psittaci 01DC11]
gi|384452388|ref|YP_005664985.1| peptide deformylase [Chlamydophila psittaci 08DC60]
gi|384453363|ref|YP_005665959.1| peptide deformylase [Chlamydophila psittaci C19/98]
gi|384454342|ref|YP_005666937.1| peptide deformylase [Chlamydophila psittaci 02DC15]
gi|392376504|ref|YP_004064282.1| peptide deformylase [Chlamydophila psittaci RD1]
gi|406592156|ref|YP_006739336.1| peptide deformylase [Chlamydia psittaci CP3]
gi|406593251|ref|YP_006740430.1| peptide deformylase [Chlamydia psittaci NJ1]
gi|406594677|ref|YP_006741469.1| peptide deformylase [Chlamydia psittaci MN]
gi|407453825|ref|YP_006732933.1| peptide deformylase [Chlamydia psittaci 84/55]
gi|407455144|ref|YP_006734035.1| peptide deformylase [Chlamydia psittaci GR9]
gi|407456521|ref|YP_006735094.1| peptide deformylase [Chlamydia psittaci VS225]
gi|407457876|ref|YP_006736181.1| peptide deformylase [Chlamydia psittaci WS/RT/E30]
gi|407459121|ref|YP_006737224.1| peptide deformylase [Chlamydia psittaci M56]
gi|410858286|ref|YP_006974226.1| peptide deformylase [Chlamydia psittaci 01DC12]
gi|449070962|ref|YP_007438042.1| peptide deformylase [Chlamydophila psittaci Mat116]
gi|313847847|emb|CBY16841.1| peptide deformylase [Chlamydophila psittaci RD1]
gi|325507284|gb|ADZ18922.1| peptide deformylase [Chlamydophila psittaci 6BC]
gi|328814926|gb|EGF84915.1| peptide deformylase [Chlamydophila psittaci Cal10]
gi|328914507|gb|AEB55340.1| peptide deformylase [Chlamydophila psittaci 6BC]
gi|334692144|gb|AEG85363.1| peptide deformylase [Chlamydophila psittaci C19/98]
gi|334693124|gb|AEG86342.1| peptide deformylase [Chlamydophila psittaci 01DC11]
gi|334694099|gb|AEG87316.1| peptide deformylase [Chlamydophila psittaci 02DC15]
gi|334695077|gb|AEG88293.1| peptide deformylase [Chlamydophila psittaci 08DC60]
gi|405780584|gb|AFS19334.1| peptide deformylase [Chlamydia psittaci 84/55]
gi|405781687|gb|AFS20436.1| peptide deformylase [Chlamydia psittaci GR9]
gi|405783109|gb|AFS21857.1| peptide deformylase [Chlamydia psittaci MN]
gi|405783782|gb|AFS22529.1| peptide deformylase [Chlamydia psittaci VS225]
gi|405784742|gb|AFS23488.1| peptide deformylase [Chlamydia psittaci WS/RT/E30]
gi|405786038|gb|AFS24783.1| peptide deformylase [Chlamydia psittaci M56]
gi|405788028|gb|AFS26771.1| peptide deformylase [Chlamydia psittaci CP3]
gi|405789123|gb|AFS27865.1| peptide deformylase [Chlamydia psittaci NJ1]
gi|410811181|emb|CCO01826.1| peptide deformylase [Chlamydia psittaci 01DC12]
gi|449039470|gb|AGE74894.1| peptide deformylase [Chlamydophila psittaci Mat116]
Length = 184
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/122 (40%), Positives = 74/122 (60%), Gaps = 6/122 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M++ M G+GL+APQVG +V+L V GE +G+ I V +NP ++ S ++
Sbjct: 34 MYETMVAHKGVGLAAPQVGESVRLFVMCVEGETEDGDLIFCDFPKVYINPVLSDVSEDLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
EGCLS PG+ ADV RP S+ + A +++G F+ L PAR+ HE DHL G+L+ +
Sbjct: 94 LGREGCLSIPGLRADVYRPRSITVKAINLDGQEFTEHLEGFPARIIMHENDHLNGVLYID 153
Query: 115 RM 116
+M
Sbjct: 154 KM 155
>gi|363899131|ref|ZP_09325642.1| polypeptide deformylase [Oribacterium sp. ACB1]
gi|395209288|ref|ZP_10398382.1| peptide deformylase [Oribacterium sp. ACB8]
gi|361959461|gb|EHL12748.1| polypeptide deformylase [Oribacterium sp. ACB1]
gi|394704919|gb|EJF12448.1| peptide deformylase [Oribacterium sp. ACB8]
Length = 164
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 75/129 (58%), Gaps = 4/129 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +G+GL+APQVGI Q+ V + G+G V +NP + ++ EEGC
Sbjct: 35 MFETMYDANGVGLAAPQVGILKQIFVVDI----GDGNRYVAINPEIRTLGEEVQTGEEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG V RP +++ A D N +++ S AR F HE DHL GIL+ E++ ++
Sbjct: 91 LSVPGKEGIVTRPMKIEVKALDQNMQEYTLEASGFLARAFSHENDHLNGILYTEKVEGEL 150
Query: 121 LDSIREQLE 129
D + E+L+
Sbjct: 151 EDVVYEELD 159
>gi|114327357|ref|YP_744513.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1]
gi|114315531|gb|ABI61591.1| peptide deformylase [Granulibacter bethesdensis CGDNIH1]
Length = 205
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MYK GIGL+APQ+ ++L V + V + +VL+NP + S +M EEGC
Sbjct: 69 MFATMYKAPGIGLAAPQIDSLLRLAVVD-VSPDDQKAPLVLINPDIIARSEEMATREEGC 127
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +ADV RP +K+ D++G+R + DL A QHE DHL GILF + ++
Sbjct: 128 LSLPNQYADVTRPARIKLRYEDLDGSRREMEADDLLATCIQHEIDHLDGILFVDHLS 184
>gi|254460256|ref|ZP_05073672.1| peptide deformylase [Rhodobacterales bacterium HTCC2083]
gi|206676845|gb|EDZ41332.1| peptide deformylase [Rhodobacteraceae bacterium HTCC2083]
Length = 172
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 78/129 (60%), Gaps = 6/129 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-EGEEIVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQVG+ +++V + V E G + E +V+VNPRV S++ Y+EG
Sbjct: 34 MLETMYTAPGIGLAAPQVGVLERMIVLDCVKEDGAKPEPLVMVNPRVIAASDETNVYDEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +ADV RP+ V+++ D++G + L A QHE DHL+G LF D
Sbjct: 94 CLSIPDQYADVTRPKEVRVEWLDLDGNLQKRDMDGLWATCVQHEIDHLEGKLFI-----D 148
Query: 120 VLDSIREQL 128
L ++ Q+
Sbjct: 149 YLKPLKRQM 157
>gi|312143913|ref|YP_003995359.1| peptide deformylase [Halanaerobium hydrogeniformans]
gi|311904564|gb|ADQ15005.1| peptide deformylase [Halanaerobium hydrogeniformans]
Length = 150
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 73/118 (61%), Gaps = 5/118 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +G+GL+APQVGI ++ V + GEG +IVL+NP + + + KMI EEGC
Sbjct: 35 MFETMYAEEGVGLAAPQVGILKRIAVIDI----GEGNKIVLINPEIIEENGKMI-MEEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS PG +V R + +K+ + + +G + AR QHE DHL G+LF ++M +
Sbjct: 90 LSIPGRTGEVIRSKEIKVSSLNRDGEEIEIIAEGFEARAIQHEIDHLDGVLFIDKMVE 147
>gi|85711005|ref|ZP_01042066.1| N-formylmethionyl-tRNA deformylase [Idiomarina baltica OS145]
gi|85695409|gb|EAQ33346.1| N-formylmethionyl-tRNA deformylase [Idiomarina baltica OS145]
Length = 173
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY++ G+GL+A QV ++ +L V + + E +V +NP + + S EEGC
Sbjct: 35 MFETMYESQGVGLAATQVDVHQRLFVAD--CSENQNEPLVFINPEITR-SEGHFTNEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFP + A VER ES+ + A D NG RFS+ L A QHE DHL G LF + ++
Sbjct: 92 LSFPNVFAKVERAESITVQALDKNGERFSMDAEGLLAICVQHEIDHLDGKLFVDYLSPLK 151
Query: 121 LDSIREQLE 129
+ IR++LE
Sbjct: 152 RERIRKKLE 160
>gi|408670697|ref|YP_006870768.1| peptide deformylase [Borrelia garinii NMJW1]
gi|407240519|gb|AFT83402.1| peptide deformylase [Borrelia garinii NMJW1]
Length = 172
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 78/125 (62%), Gaps = 7/125 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E +V +NP + + S ++ Y+EGC
Sbjct: 39 MIELMDISGGVGLAAPQVGLDLSLFV---VRENRIARPLVFINPSITETSYELNSYKEGC 95
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFF----ERM 116
LS PG++ D+ RP+ + ++ D NG F++ SD AR+ QHE DHL GILF ER+
Sbjct: 96 LSIPGVYYDLMRPKGIVVNFYDENGKSFTIENSDFLARIIQHEMDHLNGILFIDYYDERI 155
Query: 117 TDDVL 121
+ +L
Sbjct: 156 KNKLL 160
>gi|89898499|ref|YP_515609.1| peptide deformylase [Chlamydophila felis Fe/C-56]
gi|123722301|sp|Q253S4.1|DEF_CHLFF RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|89331871|dbj|BAE81464.1| polypeptide deformylase [Chlamydophila felis Fe/C-56]
Length = 186
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M++ M G+GL+APQVG ++ L V GE +G+ I V +NP ++ S ++
Sbjct: 34 MYETMVAHKGVGLAAPQVGESLSLFVVCVEGETEDGDLIFCDFPKVYINPVLSNASEDLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
EGCLS PG+ ADV RP+S+ + A +++G F+ L PAR+ HE DHL G+L+ +
Sbjct: 94 IGREGCLSIPGLRADVYRPQSITVTALNLDGQEFTEHLEGFPARIIMHENDHLHGVLYID 153
Query: 115 RMTD 118
+M +
Sbjct: 154 KMEE 157
>gi|303326112|ref|ZP_07356555.1| peptide deformylase [Desulfovibrio sp. 3_1_syn3]
gi|345893006|ref|ZP_08843814.1| polypeptide deformylase [Desulfovibrio sp. 6_1_46AFAA]
gi|302864028|gb|EFL86959.1| peptide deformylase [Desulfovibrio sp. 3_1_syn3]
gi|345046634|gb|EGW50515.1| polypeptide deformylase [Desulfovibrio sp. 6_1_46AFAA]
Length = 172
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+APQVG N++++V +P G+ + + VL+NP + ++ +EGC
Sbjct: 34 MLETMYAAPGVGLAAPQVGRNIRMLVMDPAGKDEDKQPRVLINPVLELSGEDVVSEQEGC 93
Query: 61 LSFP-GIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P ADV R V + A D++G L+D PA + QHE DHL GILF ++++
Sbjct: 94 LSVPLNYRADVPRKSRVLLKATDLDGNGIEEDLTDFPAIIIQHEADHLDGILFIDKIS 151
>gi|453330526|dbj|GAC87272.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconobacter
thailandicus NBRC 3255]
Length = 223
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 69/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MYK GIGL+APQVG+ ++ + + E E +VL+NP + S +M EEGC
Sbjct: 87 MFSAMYKAPGIGLAAPQVGLGMRFALVDVAEEDAPREPMVLINPEIVTDSEQMAVREEGC 146
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+V RPES+++ R++ G L A QHE DHL G+LF + ++
Sbjct: 147 LSLPNQYAEVIRPESIRVRYRNLAGEIIERDAEGLLATCIQHEMDHLDGVLFVDHLS 203
>gi|411118016|ref|ZP_11390397.1| peptide deformylase [Oscillatoriales cyanobacterium JSC-12]
gi|410711740|gb|EKQ69246.1| peptide deformylase [Oscillatoriales cyanobacterium JSC-12]
Length = 188
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 70/121 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+APQV + Q++V + ++L+NP + K S + +EGC
Sbjct: 48 MLQTMYSADGIGLAAPQVAVQKQIIVVDIEPNEAAKPPLILINPTIIKSSRDLSVTQEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV+RP V++ +D G + + L A QHE DHL G+LF +R+ + +
Sbjct: 108 LSIPGVYLDVKRPSEVEVSFKDETGRPQRLKATGLLACCIQHEIDHLNGVLFVDRVENAL 167
Query: 121 L 121
L
Sbjct: 168 L 168
>gi|124485018|ref|YP_001029634.1| peptide deformylase [Methanocorpusculum labreanum Z]
gi|124362559|gb|ABN06367.1| peptide deformylase [Methanocorpusculum labreanum Z]
Length = 162
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 73/130 (56%), Gaps = 7/130 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIV-LVNPRVNKYSNKMIPYEEG 59
M ++ + G+GL+APQVGI + V NP G+++ ++NP + K N EEG
Sbjct: 32 MVPMLKEHRGVGLAAPQVGIGKRFFVMNP------GDKVRRVINPEIMKTGNAFSEMEEG 85
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS PGIH V RP + + + G L D PARVF HE+DHL GILF +R++
Sbjct: 86 CLSVPGIHKKVRRPRRITVRYTNEAGELIEEELKDYPARVFLHEYDHLDGILFVDRISPI 145
Query: 120 VLDSIREQLE 129
I +QLE
Sbjct: 146 AKKMIAKQLE 155
>gi|317050727|ref|YP_004111843.1| peptide deformylase [Desulfurispirillum indicum S5]
gi|316945811|gb|ADU65287.1| peptide deformylase [Desulfurispirillum indicum S5]
Length = 171
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
MFD MY +G+GL+APQ+GI ++ V +P G+ E + +VL+NP++ + +EEG
Sbjct: 34 MFDTMYNANGVGLAAPQIGILRRICVLDPASGKEEEAQPLVLINPQILS-GEGLTTFEEG 92
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS PG + +++R E +++ D+ G + L A + QHE DHL G LF E +
Sbjct: 93 CLSVPGYYGEIKRYERIQVQFNDLQGQEQTAILDGFTAIIAQHEMDHLNGKLFIEHLGSS 152
Query: 120 VLDSIREQL 128
D IR ++
Sbjct: 153 ERDLIRRKI 161
>gi|347755204|ref|YP_004862768.1| peptide deformylase [Candidatus Chloracidobacterium thermophilum B]
gi|347587722|gb|AEP12252.1| peptide deformylase [Candidatus Chloracidobacterium thermophilum B]
Length = 167
Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 71/115 (61%), Gaps = 3/115 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY G+GL+APQVG++ +L V + E+ + V +NP + + + +EGC
Sbjct: 34 MFETMYDAPGVGLAAPQVGVSRRLFVMDCSKEKNR--QFVFINPEILQTEGTQVG-DEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
LSFPGI+ +VERP V + A+++ G F DL AR HE+DHLQG LF E+
Sbjct: 91 LSFPGIYFEVERPARVIVRAQNVKGEWFEGDFLDLEARCVLHEYDHLQGELFIEK 145
>gi|21674275|ref|NP_662340.1| peptide deformylase [Chlorobium tepidum TLS]
gi|25452909|sp|Q8KCG7.1|DEF_CHLTE RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|21647445|gb|AAM72682.1| peptide deformylase [Chlorobium tepidum TLS]
Length = 187
Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 78/131 (59%), Gaps = 3/131 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV--FNPVGERGEGEEIVLVNPRVNKYSNKMIPYEE 58
MFD MYK GIGL+APQVG +++L+V + + E + + +V++NPR+ + + EE
Sbjct: 34 MFDTMYKAPGIGLAAPQVGHSLRLVVVDISTIKEYADFKPMVVINPRIVAVRGRSL-MEE 92
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
GCLS PGI +V RP ++ + RD + + ARV QHE DHL G LF +RM
Sbjct: 93 GCLSVPGIAGNVVRPSAITLHYRDEKFEEHTADFHSMMARVLQHEIDHLDGTLFVDRMDK 152
Query: 119 DVLDSIREQLE 129
I+++L+
Sbjct: 153 RDRRKIQKELD 163
>gi|349700011|ref|ZP_08901640.1| N-formylmethionylaminoacyl-tRNA deformylase [Gluconacetobacter
europaeus LMG 18494]
Length = 180
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 75/118 (63%), Gaps = 2/118 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
MF MY+ GIGL+APQVG+ ++ + + V ++ E +VL+NP V ++ M EEG
Sbjct: 45 MFAAMYQAPGIGLAAPQVGLGMRFAIVD-VSDKDEARNPLVLINPEVIAETDNMAVREEG 103
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLS P +A+V RPE+V++ +D++G + DL A QHE DHL+GILF + ++
Sbjct: 104 CLSLPNQYAEVIRPEAVRVRYQDMDGKVQELEADDLLATCLQHEIDHLEGILFVDHLS 161
>gi|423720643|ref|ZP_17694825.1| peptide deformylase [Geobacillus thermoglucosidans TNO-09.020]
gi|383365996|gb|EID43287.1| peptide deformylase [Geobacillus thermoglucosidans TNO-09.020]
Length = 157
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 71/116 (61%), Gaps = 4/116 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M DG+GL+APQVGI Q+ V + E G I L+NPR+ + + I EGC
Sbjct: 35 MYDTMIDADGVGLAAPQVGIAKQIAVVDAGDEHGR---IELINPRIMEARGEQIG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LSFPG+ A+V+R VK+ A+D G F++ + AR QHE DHL GILF ++
Sbjct: 91 LSFPGLFAEVKRANYVKVRAQDRRGRPFTLKATGFLARALQHEIDHLNGILFTSKV 146
>gi|340752594|ref|ZP_08689393.1| peptide deformylase [Fusobacterium sp. 2_1_31]
gi|229422396|gb|EEO37443.1| peptide deformylase [Fusobacterium sp. 2_1_31]
Length = 174
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 72/117 (61%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MYKTDGIGL+APQVG++ ++ V E G G+ L+NP + + + +EEGC
Sbjct: 36 MVETMYKTDGIGLAAPQVGVSKRVFVC----EDGTGKIRKLINPVIEPLTEETQEFEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ VERP+ V + + NG +L A V QHE DHL GILF E+++
Sbjct: 92 LSVPGIYKKVERPKKVMLKYLNENGEAVEEIAEELLAVVVQHENDHLNGILFVEKIS 148
>gi|224531760|ref|ZP_03672392.1| peptide deformylase [Borrelia valaisiana VS116]
gi|224511225|gb|EEF81631.1| peptide deformylase [Borrelia valaisiana VS116]
Length = 165
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 77/125 (61%), Gaps = 7/125 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E +V +NP + + S ++ Y EGC
Sbjct: 32 MIELMDISGGVGLAAPQVGLDLSLFV---VRENKMARPLVFINPLITETSYELNSYREGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFF----ERM 116
LS PG++ D+ RP+++ + D NG F++ SD AR+ QHE DHL G+LF ER+
Sbjct: 89 LSIPGVYYDLMRPKAIVVSFYDENGKSFTIENSDFLARIIQHEMDHLNGVLFIDYYEERI 148
Query: 117 TDDVL 121
+ +L
Sbjct: 149 KNKLL 153
>gi|365856495|ref|ZP_09396512.1| peptide deformylase [Acetobacteraceae bacterium AT-5844]
gi|363718031|gb|EHM01387.1| peptide deformylase [Acetobacteraceae bacterium AT-5844]
Length = 177
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MYK GIGL+APQVG+ +++ V + + + + + +VL+NP + S ++ EEGC
Sbjct: 39 MLATMYKAPGIGLAAPQVGVMLRMAVVD-IQKDDKQDPMVLINPEIVAQSTELSTREEGC 97
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +ADV RP +K+ ++G+R + DL A QHE DHL G+LF + ++
Sbjct: 98 LSLPNQYADVTRPARIKLRWTALDGSRKELEADDLLATCIQHELDHLDGVLFVDHIS 154
>gi|365175177|ref|ZP_09362614.1| peptide deformylase [Synergistes sp. 3_1_syn1]
gi|363613516|gb|EHL65027.1| peptide deformylase [Synergistes sp. 3_1_syn1]
Length = 163
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 72/117 (61%), Gaps = 6/117 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +DGIGL+APQVG+ +L+V + GE+ VLVNP V + + + EEGC
Sbjct: 35 MFETMYASDGIGLAAPQVGVTKKLVVID-----YHGEKFVLVNPEVIE-AEGSVTNEEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LSFPGI+ V PE + + +D GA +SL A VF HE DHL G L +R++
Sbjct: 89 LSFPGIYEKVTSPEKLTVVYQDETGAPRRLSLDGFTACVFSHEIDHLNGRLLIDRVS 145
>gi|407693961|ref|YP_006818749.1| peptide deformylase 1 [Alcanivorax dieselolei B5]
gi|407251299|gb|AFT68406.1| Peptide deformylase 1 [Alcanivorax dieselolei B5]
Length = 168
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+A QV ++ +L+V + ER + +V +NP + + + PYEEGC
Sbjct: 35 MIETMYEASGIGLAATQVNVHQRLLVIDVSEERDQP--LVFINPEITPLTGDLAPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + VERP V I A D +G F + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYEQVERPARVMIKALDRDGNPFEMEADGLLATCIQHEIDHLDGKLFVDYVSRLK 152
Query: 121 LDSIREQLE 129
D I+++L+
Sbjct: 153 RDRIKKKLQ 161
>gi|390956671|ref|YP_006420428.1| peptide deformylase [Terriglobus roseus DSM 18391]
gi|390411589|gb|AFL87093.1| peptide deformylase [Terriglobus roseus DSM 18391]
Length = 169
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 80/130 (61%), Gaps = 5/130 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +GIGL+APQ+G++ +L + + + + + +VL+NP + + + + EEGC
Sbjct: 34 MFESMYAAEGIGLAAPQIGVSKRLFIVDLSFGKEKSDRLVLINPEIIQRDGRQVE-EEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT--- 117
LS P I V R +V+I A+D G F + +L +R FQHE DHL GILF +R++
Sbjct: 93 LSLPDIRDKVSRSFTVRIRAQDEYGKWFEMDGEELLSRAFQHELDHLDGILFIDRLSRLK 152
Query: 118 -DDVLDSIRE 126
D +L IR+
Sbjct: 153 RDLILRRIRK 162
>gi|303256332|ref|ZP_07342348.1| peptide deformylase [Burkholderiales bacterium 1_1_47]
gi|330999027|ref|ZP_08322752.1| peptide deformylase [Parasutterella excrementihominis YIT 11859]
gi|302861061|gb|EFL84136.1| peptide deformylase [Burkholderiales bacterium 1_1_47]
gi|329575769|gb|EGG57295.1| peptide deformylase [Parasutterella excrementihominis YIT 11859]
Length = 175
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MYK G+GL+A QV +++L+V + E+ + + VLVNP + + S + P+EEGC
Sbjct: 35 MAETMYKAPGVGLAATQVDRHIRLIVIDITEEKNDLK--VLVNPELVESSEETKPWEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ V RP VK+ A+D+ G F + L A QHE DHL+G +F + ++
Sbjct: 93 LSLPGIYDKVTRPAKVKVKAQDLEGNFFELECDGLLAVCVQHEMDHLEGTVFVDHLS 149
>gi|308173535|ref|YP_003920240.1| polypeptide deformylase [Bacillus amyloliquefaciens DSM 7]
gi|384159444|ref|YP_005541517.1| peptide deformylase [Bacillus amyloliquefaciens TA208]
gi|384164121|ref|YP_005545500.1| polypeptide deformylase [Bacillus amyloliquefaciens LL3]
gi|384168491|ref|YP_005549869.1| peptide deformylase [Bacillus amyloliquefaciens XH7]
gi|307606399|emb|CBI42770.1| polypeptide deformylase [Bacillus amyloliquefaciens DSM 7]
gi|328553532|gb|AEB24024.1| peptide deformylase [Bacillus amyloliquefaciens TA208]
gi|328911676|gb|AEB63272.1| polypeptide deformylase [Bacillus amyloliquefaciens LL3]
gi|341827770|gb|AEK89021.1| peptide deformylase [Bacillus amyloliquefaciens XH7]
Length = 160
Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 73/117 (62%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI + V + +GE E I LVNP + + S + I E GC
Sbjct: 35 MYDTMLEMDGVGLAAPQIGILKRAAVVD-IGE--ESGRIDLVNPVILEKSGEQIGVE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LSFPG++ +V RP+ VK+ A D G F V AR QHE DHL+GILF ++T
Sbjct: 91 LSFPGVYGEVTRPDYVKVKAYDRKGKPFIVEAEGFLARAIQHEMDHLEGILFTSKIT 147
>gi|340751504|ref|ZP_08688316.1| polypeptide deformylase [Fusobacterium mortiferum ATCC 9817]
gi|229420472|gb|EEO35519.1| polypeptide deformylase [Fusobacterium mortiferum ATCC 9817]
Length = 169
Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 82/130 (63%), Gaps = 4/130 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + M++ G+GL+APQVGI+ ++ V + +G+G ++NP + ++K++ +EEGC
Sbjct: 34 MVETMHEAKGVGLAAPQVGISKRMFVCD----QGDGVVRKVINPIITPMTDKLMDFEEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+ V+RPE +KID + G + S + A + QHEFDHL +LF ++++
Sbjct: 90 LSVPGIYKKVQRPEKIKIDYLNEKGEKVSEEVEGFLAIIMQHEFDHLDAVLFVDKISPMA 149
Query: 121 LDSIREQLEI 130
I ++L++
Sbjct: 150 KRMINKKLQM 159
>gi|452944652|ref|YP_007500817.1| peptide deformylase [Hydrogenobaculum sp. HO]
gi|452883070|gb|AGG15774.1| peptide deformylase [Hydrogenobaculum sp. HO]
Length = 171
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 73/119 (61%), Gaps = 3/119 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI--VLVNPRVNKYSNKMIPYEE 58
M + MYK DGIGL+A QV I + +MV + + E+ VL+NP V + I ++E
Sbjct: 33 MKETMYKNDGIGLAANQVNIPLSIMVIDTTSREDDQEKFKDVLINPTVLAKEGE-IKFKE 91
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
GCLSFPG+ +V R + + I A + ++LS LPA VFQHEFDHL GI F +R++
Sbjct: 92 GCLSFPGLQVEVVRAKEITIKAINEREEEVILNLSGLPAIVFQHEFDHLNGITFLDRLS 150
>gi|398926156|ref|ZP_10662317.1| peptide deformylase [Pseudomonas sp. GM48]
gi|398171193|gb|EJM59104.1| peptide deformylase [Pseudomonas sp. GM48]
Length = 168
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 80/129 (62%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRTEPR--VFINPELEPLTDEMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VK+ A D +G + + DL A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQRVKVKALDRDGQPYELIAEDLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|302037138|ref|YP_003797460.1| peptide deformylase [Candidatus Nitrospira defluvii]
gi|300605202|emb|CBK41535.1| Peptide deformylase [Candidatus Nitrospira defluvii]
Length = 176
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 68/118 (57%), Gaps = 1/118 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+APQVG + QL+V + GE G + VL+NP + Y + + EGC
Sbjct: 38 MFETMYDEPGIGLAAPQVGRSQQLVVMDCPGEGGF-PKTVLINPTIQFYGPEQVEGWEGC 96
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS G+ V RP +V++ D N F S L A QHE DHL G LF +RMTD
Sbjct: 97 LSVDGLRGKVTRPSTVRVTGLDRNAKPFDFEASGLYAVCIQHELDHLIGKLFIDRMTD 154
>gi|15605076|ref|NP_219861.1| peptide deformylase [Chlamydia trachomatis D/UW-3/CX]
gi|76789079|ref|YP_328165.1| peptide deformylase [Chlamydia trachomatis A/HAR-13]
gi|166154565|ref|YP_001654683.1| peptide deformylase [Chlamydia trachomatis 434/Bu]
gi|166155440|ref|YP_001653695.1| peptide deformylase [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|237802778|ref|YP_002887972.1| peptide deformylase [Chlamydia trachomatis B/Jali20/OT]
gi|237804700|ref|YP_002888854.1| peptide deformylase [Chlamydia trachomatis B/TZ1A828/OT]
gi|255311158|ref|ZP_05353728.1| peptide deformylase [Chlamydia trachomatis 6276]
gi|255317459|ref|ZP_05358705.1| peptide deformylase [Chlamydia trachomatis 6276s]
gi|255506935|ref|ZP_05382574.1| peptide deformylase [Chlamydia trachomatis D(s)2923]
gi|301335828|ref|ZP_07224072.1| peptide deformylase [Chlamydia trachomatis L2tet1]
gi|339626023|ref|YP_004717502.1| peptide deformylase [Chlamydia trachomatis L2c]
gi|376282359|ref|YP_005156185.1| peptide deformylase [Chlamydia trachomatis A2497]
gi|385239867|ref|YP_005807709.1| peptide deformylase [Chlamydia trachomatis G/9768]
gi|385240790|ref|YP_005808631.1| peptide deformylase [Chlamydia trachomatis G/11222]
gi|385242643|ref|YP_005810482.1| peptide deformylase [Chlamydia trachomatis G/9301]
gi|385246253|ref|YP_005815075.1| peptide deformylase [Chlamydia trachomatis G/11074]
gi|389858045|ref|YP_006360287.1| peptide deformylase [Chlamydia trachomatis F/SW4]
gi|389859797|ref|YP_006362037.1| peptide deformylase [Chlamydia trachomatis F/SW5]
gi|6831532|sp|O84357.1|DEF_CHLTR RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|123606946|sp|Q3KM05.1|DEF_CHLTA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|238687417|sp|B0B7S2.1|DEF_CHLT2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|238687475|sp|B0BBY7.1|DEF_CHLTB RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|3328774|gb|AAC67948.1| Polypeptide Deformylase [Chlamydia trachomatis D/UW-3/CX]
gi|76167609|gb|AAX50617.1| peptide deformylase [Chlamydia trachomatis A/HAR-13]
gi|83033878|gb|ABB97392.1| polypeptide deformylase [Chlamydia trachomatis]
gi|83033880|gb|ABB97393.1| polypeptide deformylase [Chlamydia trachomatis]
gi|165930553|emb|CAP04048.1| peptide deformylase [Chlamydia trachomatis 434/Bu]
gi|165931428|emb|CAP07002.1| peptide deformylase [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|231273000|emb|CAX09912.1| peptide deformylase [Chlamydia trachomatis B/TZ1A828/OT]
gi|231274012|emb|CAX10805.1| peptide deformylase [Chlamydia trachomatis B/Jali20/OT]
gi|296435872|gb|ADH18046.1| peptide deformylase [Chlamydia trachomatis G/9768]
gi|296436798|gb|ADH18968.1| peptide deformylase [Chlamydia trachomatis G/11222]
gi|296437732|gb|ADH19893.1| peptide deformylase [Chlamydia trachomatis G/11074]
gi|297140231|gb|ADH96989.1| peptide deformylase [Chlamydia trachomatis G/9301]
gi|339461132|gb|AEJ77635.1| peptide deformylase [Chlamydia trachomatis L2c]
gi|371908389|emb|CAX09018.1| peptide deformylase [Chlamydia trachomatis A2497]
gi|380249117|emb|CCE14409.1| peptide deformylase [Chlamydia trachomatis F/SW5]
gi|380249992|emb|CCE13520.1| peptide deformylase [Chlamydia trachomatis F/SW4]
gi|438690279|emb|CCP49536.1| peptide deformylase [Chlamydia trachomatis A/7249]
gi|438691363|emb|CCP48637.1| peptide deformylase [Chlamydia trachomatis A/5291]
gi|438692736|emb|CCP47738.1| peptide deformylase [Chlamydia trachomatis A/363]
gi|440525270|emb|CCP50521.1| peptide deformylase [Chlamydia trachomatis K/SotonK1]
gi|440526157|emb|CCP51641.1| peptide deformylase [Chlamydia trachomatis L2b/8200/07]
gi|440527055|emb|CCP52539.1| peptide deformylase [Chlamydia trachomatis D/SotonD1]
gi|440527946|emb|CCP53430.1| peptide deformylase [Chlamydia trachomatis D/SotonD5]
gi|440528837|emb|CCP54321.1| peptide deformylase [Chlamydia trachomatis D/SotonD6]
gi|440531519|emb|CCP57029.1| peptide deformylase [Chlamydia trachomatis F/SotonF3]
gi|440532411|emb|CCP57921.1| peptide deformylase [Chlamydia trachomatis G/SotonG1]
gi|440533304|emb|CCP58814.1| peptide deformylase [Chlamydia trachomatis Ia/SotonIa1]
gi|440534198|emb|CCP59708.1| peptide deformylase [Chlamydia trachomatis Ia/SotonIa3]
gi|440535982|emb|CCP61495.1| peptide deformylase [Chlamydia trachomatis L2b/795]
gi|440536874|emb|CCP62388.1| peptide deformylase [Chlamydia trachomatis L1/440/LN]
gi|440537764|emb|CCP63278.1| peptide deformylase [Chlamydia trachomatis L1/1322/p2]
gi|440538654|emb|CCP64168.1| peptide deformylase [Chlamydia trachomatis L1/115]
gi|440539543|emb|CCP65057.1| peptide deformylase [Chlamydia trachomatis L1/224]
gi|440540434|emb|CCP65948.1| peptide deformylase [Chlamydia trachomatis L2/25667R]
gi|440541323|emb|CCP66837.1| peptide deformylase [Chlamydia trachomatis L3/404/LN]
gi|440542210|emb|CCP67724.1| peptide deformylase [Chlamydia trachomatis L2b/UCH-2]
gi|440543101|emb|CCP68615.1| peptide deformylase [Chlamydia trachomatis L2b/Canada2]
gi|440543992|emb|CCP69506.1| peptide deformylase [Chlamydia trachomatis L2b/LST]
gi|440544882|emb|CCP70396.1| peptide deformylase [Chlamydia trachomatis L2b/Ams1]
gi|440545772|emb|CCP71286.1| peptide deformylase [Chlamydia trachomatis L2b/CV204]
gi|440914034|emb|CCP90451.1| peptide deformylase [Chlamydia trachomatis L2b/Ams2]
gi|440914924|emb|CCP91341.1| peptide deformylase [Chlamydia trachomatis L2b/Ams3]
gi|440915816|emb|CCP92233.1| peptide deformylase [Chlamydia trachomatis L2b/Canada1]
gi|440916710|emb|CCP93127.1| peptide deformylase [Chlamydia trachomatis L2b/Ams4]
gi|440917600|emb|CCP94017.1| peptide deformylase [Chlamydia trachomatis L2b/Ams5]
Length = 181
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 76/124 (61%), Gaps = 6/124 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M + M G+GL+APQVG ++ L + E +GE + V +NP + + S +++
Sbjct: 34 MSETMAFYKGVGLAAPQVGQSISLFIMGVERELEDGELVFCDFPRVFINPVITQKSEQLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
EGCLS PG+ +V RP+ + + A++++G +FS++L AR+ HE DHL G+L+ +
Sbjct: 94 YGNEGCLSIPGLRGEVARPDKITVSAKNLDGQQFSLALEGFLARIVMHETDHLHGVLYID 153
Query: 115 RMTD 118
RM+D
Sbjct: 154 RMSD 157
>gi|306846236|ref|ZP_07478798.1| peptide deformylase [Brucella inopinata BO1]
gi|306273487|gb|EFM55348.1| peptide deformylase [Brucella inopinata BO1]
Length = 175
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 70/117 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY GIGL+A QVG ++++V + E + VNP + + S+K YEEGC
Sbjct: 35 MFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKEGEPKAPHIFVNPTIVQSSDKCSTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP +VK++ D +G S+ L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPATVKVNYFDADGKPQSMDADGLMATCLQHEIDHLNGVLFIDHIS 151
>gi|255348717|ref|ZP_05380724.1| peptide deformylase [Chlamydia trachomatis 70]
gi|255503257|ref|ZP_05381647.1| peptide deformylase [Chlamydia trachomatis 70s]
gi|385241723|ref|YP_005809563.1| peptide deformylase [Chlamydia trachomatis E/11023]
gi|385245330|ref|YP_005814153.1| peptide deformylase [Chlamydia trachomatis E/150]
gi|386262706|ref|YP_005815985.1| peptide deformylase [Chlamydia trachomatis Sweden2]
gi|389858921|ref|YP_006361162.1| peptide deformylase [Chlamydia trachomatis E/SW3]
gi|289525394|emb|CBJ14871.1| peptide deformylase [Chlamydia trachomatis Sweden2]
gi|296434946|gb|ADH17124.1| peptide deformylase [Chlamydia trachomatis E/150]
gi|296438666|gb|ADH20819.1| peptide deformylase [Chlamydia trachomatis E/11023]
gi|380250870|emb|CCE12631.1| peptide deformylase [Chlamydia trachomatis E/SW3]
gi|440529729|emb|CCP55213.1| peptide deformylase [Chlamydia trachomatis E/SotonE4]
gi|440530628|emb|CCP56112.1| peptide deformylase [Chlamydia trachomatis E/SotonE8]
gi|440535096|emb|CCP60606.1| peptide deformylase [Chlamydia trachomatis E/Bour]
Length = 181
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 76/124 (61%), Gaps = 6/124 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M + M G+GL+APQVG ++ L + E +GE + V +NP + + S +++
Sbjct: 34 MSETMAFYKGVGLAAPQVGQSISLFIMGVERELEDGELVFCDFPRVFINPVITQKSEQLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
EGCLS PG+ +V RP+ + + A++++G +FS++L AR+ HE DHL G+L+ +
Sbjct: 94 YGNEGCLSIPGLRGEVARPDKITVSAKNLDGQQFSLALEGFLARIVMHETDHLHGVLYID 153
Query: 115 RMTD 118
RM+D
Sbjct: 154 RMSD 157
>gi|385243560|ref|YP_005811406.1| Peptide deformylase [Chlamydia trachomatis D-EC]
gi|385244440|ref|YP_005812284.1| Peptide deformylase [Chlamydia trachomatis D-LC]
gi|385270037|ref|YP_005813197.1| Peptide deformylase [Chlamydia trachomatis A2497]
gi|297748483|gb|ADI51029.1| Peptide deformylase [Chlamydia trachomatis D-EC]
gi|297749363|gb|ADI52041.1| Peptide deformylase [Chlamydia trachomatis D-LC]
gi|347975177|gb|AEP35198.1| Peptide deformylase [Chlamydia trachomatis A2497]
Length = 191
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 76/124 (61%), Gaps = 6/124 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M + M G+GL+APQVG ++ L + E +GE + V +NP + + S +++
Sbjct: 44 MSETMAFYKGVGLAAPQVGQSISLFIMGVERELEDGELVFCDFPRVFINPVITQKSEQLV 103
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
EGCLS PG+ +V RP+ + + A++++G +FS++L AR+ HE DHL G+L+ +
Sbjct: 104 YGNEGCLSIPGLRGEVARPDKITVSAKNLDGQQFSLALEGFLARIVMHETDHLHGVLYID 163
Query: 115 RMTD 118
RM+D
Sbjct: 164 RMSD 167
>gi|226942187|ref|YP_002797260.1| peptide deformylase [Azotobacter vinelandii DJ]
gi|259645177|sp|C1DFV8.1|DEF_AZOVD RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|226717114|gb|ACO76285.1| Formylmethionine deformylase protein [Azotobacter vinelandii DJ]
Length = 168
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ +L+V + ++ E V +NP + ++ PY+EGC
Sbjct: 35 MFETMYAAPGIGLAATQVNVHKRLVVMDLSEDKNEPR--VFINPEFEALTEELEPYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V+I A D +G F + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQKVRIRALDRDGQPFELVAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D IR++LE
Sbjct: 153 RDRIRKKLE 161
>gi|325294662|ref|YP_004281176.1| peptide deformylase [Desulfurobacterium thermolithotrophum DSM
11699]
gi|325065110|gb|ADY73117.1| Peptide deformylase [Desulfurobacterium thermolithotrophum DSM
11699]
Length = 177
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 76/119 (63%), Gaps = 3/119 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN-PVGERGEG-EEIVLVNPRVNKYSNKMIPYEE 58
MF+ MYK G+GL+A Q+GI +++V + G+ +G E+I+L+NP + + + EE
Sbjct: 34 MFETMYKRGGVGLAANQIGILKKVVVIDLHSGKEKQGKEQIILINPEIVALEGEEVK-EE 92
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
GCLS PG++ V+R K+ A+++ G F + L AR FQHE DHL GI+F +R++
Sbjct: 93 GCLSLPGLYKKVKRAAYAKVKAQNLKGEEFIIEGEGLLARAFQHEIDHLNGIVFIDRLS 151
>gi|387927086|ref|ZP_10129765.1| peptide deformylase [Bacillus methanolicus PB1]
gi|387589230|gb|EIJ81550.1| peptide deformylase [Bacillus methanolicus PB1]
Length = 161
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 72/117 (61%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M++ M + DG+GL+APQ+G+ Q+ + + E G I L+NP + + S + EGC
Sbjct: 35 MYNTMIEYDGVGLAAPQIGVKKQIAIVDIDDETGT---IELINPEILETSGEQTG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LSFPG++ +V RP VK+ A+D G F + D AR QHE DHLQG+LF ++T
Sbjct: 91 LSFPGLYGEVTRPYFVKVKAQDRKGKPFILEAEDFLARAIQHEIDHLQGVLFTSKVT 147
>gi|315917642|ref|ZP_07913882.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563]
gi|313691517|gb|EFS28352.1| polypeptide deformylase [Fusobacterium gonidiaformans ATCC 25563]
Length = 173
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY TDG+GL+APQVGI++++ V + VG E + ++NP + + + I EEGC
Sbjct: 34 MLETMYATDGVGLAAPQVGISLRMFVCD-VGTPEESQVKKIINPIITPLTEENISVEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ V+R +KI ++ G + L PA V QHE+DHL+ LF +R++
Sbjct: 93 LSVPGIYRKVDRIAKIKISYQNEMGEKIEEILEGFPAIVVQHEYDHLEATLFVDRIS 149
>gi|219684773|ref|ZP_03539715.1| peptide deformylase [Borrelia garinii PBr]
gi|219671718|gb|EED28773.1| peptide deformylase [Borrelia garinii PBr]
Length = 165
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 78/125 (62%), Gaps = 7/125 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E + +V +NP + + S ++ Y EGC
Sbjct: 32 MIELMDISGGVGLAAPQVGLDLSLFV---VRENRMAKPLVFINPSIIETSYELNSYREGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFF----ERM 116
LS PG++ D+ RP+ + ++ D NG F++ SD AR+ QHE DHL GILF ER+
Sbjct: 89 LSIPGVYYDLMRPKGIVVNFYDENGKSFTIEDSDFLARIIQHEMDHLNGILFIDYYEERI 148
Query: 117 TDDVL 121
+ +L
Sbjct: 149 KNKLL 153
>gi|417858747|ref|ZP_12503804.1| peptide deformylase [Agrobacterium tumefaciens F2]
gi|338824751|gb|EGP58718.1| peptide deformylase [Agrobacterium tumefaciens F2]
Length = 170
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 71/117 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QVG+ +++V + E E + +V +NP + K S+ + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQVGVPRRMLVIDVSREDEEKKPVVFINPEILKVSDDISTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP S+ + D +G + +V L A QHE DHL GILF + ++
Sbjct: 95 LSIPDYYAEVERPASLTVRYVDRDGKQQTVDADGLLATCLQHEIDHLNGILFIDHIS 151
>gi|225874677|ref|YP_002756136.1| peptide deformylase [Acidobacterium capsulatum ATCC 51196]
gi|254767569|sp|C1F541.1|DEF_ACIC5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|225792384|gb|ACO32474.1| peptide deformylase [Acidobacterium capsulatum ATCC 51196]
Length = 170
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 78/130 (60%), Gaps = 5/130 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+APQ+GI+ +L V + + E+IVL+NP + + EEGC
Sbjct: 35 MFESMYEAKGIGLAAPQIGISKRLTVIDLSFKENPDEKIVLINPEIIHREGRQYE-EEGC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT--- 117
LS P I V R E V + A++++G F + +L +R FQHE DHL G+LF R++
Sbjct: 94 LSLPDIREKVVRAEKVTVRAQNLDGEWFEMDGEELLSRAFQHEIDHLDGVLFIFRISALK 153
Query: 118 -DDVLDSIRE 126
D VL IR+
Sbjct: 154 RDLVLRRIRK 163
>gi|294782531|ref|ZP_06747857.1| peptide deformylase [Fusobacterium sp. 1_1_41FAA]
gi|294481172|gb|EFG28947.1| peptide deformylase [Fusobacterium sp. 1_1_41FAA]
Length = 174
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 73/117 (62%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+TDGIGL+APQVG++ ++ V E G + ++NP + + + +EEGC
Sbjct: 36 MVETMYETDGIGLAAPQVGVSKRVFVC----EDGNRKIRKIINPVIEPLTEETQEFEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ VERP+ VK++ + NG DL A V QHE DHL GILF E+++
Sbjct: 92 LSVPGIYKKVERPKKVKLNYLNENGETVEEIAEDLLAVVVQHENDHLNGILFVEKIS 148
>gi|326402652|ref|YP_004282733.1| peptide deformylase [Acidiphilium multivorum AIU301]
gi|325049513|dbj|BAJ79851.1| peptide deformylase [Acidiphilium multivorum AIU301]
Length = 185
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY+ GIGL+APQ+G++++L+V + + + + +V++NP + S +++ EEGC
Sbjct: 45 MFAAMYRAPGIGLAAPQIGVSLRLVVMD-LAPDDQKQPMVMINPEITARSEELVSREEGC 103
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PG +A+V RP + + D +G + ++ L A QHE DHL G+LF + ++
Sbjct: 104 LSLPGQYAEVIRPGQISVAFEDEDGKKRTIDADGLLAACIQHEIDHLDGVLFVDHLS 160
>gi|348590759|ref|YP_004875221.1| peptide deformylase [Taylorella asinigenitalis MCE3]
gi|347974663|gb|AEP37198.1| Peptide deformylase [Taylorella asinigenitalis MCE3]
gi|399117088|emb|CCG19902.1| peptide deformylase [Taylorella asinigenitalis 14/45]
Length = 170
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 80/129 (62%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY ++G+GL+A QV I+ +++V + ER +VL+NP + +S + I +EEGC
Sbjct: 35 MAETMYASNGVGLAATQVDIHKRIVVIDVSEERNNL--LVLINPEITWFSPEKIVHEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ +VER V++ A D+NG F + L A QHE DHL G +F E+++
Sbjct: 93 LSVPTIYDNVERFSEVRVKALDLNGKEFELKADGLLAICIQHELDHLMGKVFVEKLSALK 152
Query: 121 LDSIREQLE 129
L+ I+ +++
Sbjct: 153 LNRIKTKIK 161
>gi|148259426|ref|YP_001233553.1| peptide deformylase [Acidiphilium cryptum JF-5]
gi|338980960|ref|ZP_08632202.1| Peptide deformylase [Acidiphilium sp. PM]
gi|146401107|gb|ABQ29634.1| peptide deformylase [Acidiphilium cryptum JF-5]
gi|338208134|gb|EGO96024.1| Peptide deformylase [Acidiphilium sp. PM]
Length = 188
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY+ GIGL+APQ+G++++L+V + + + + +V++NP + S +++ EEGC
Sbjct: 48 MFAAMYRAPGIGLAAPQIGVSLRLVVMD-LAPDDQKQPMVMINPEITARSEELVSREEGC 106
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PG +A+V RP + + D +G + ++ L A QHE DHL G+LF + ++
Sbjct: 107 LSLPGQYAEVIRPGQISVAFEDEDGKKRTIDADGLLAACIQHEIDHLDGVLFVDHLS 163
>gi|317059168|ref|ZP_07923653.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R]
gi|313684844|gb|EFS21679.1| polypeptide deformylase [Fusobacterium sp. 3_1_5R]
Length = 173
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY TDG+GL+APQVGI++++ V + VG E + ++NP + + + I EEGC
Sbjct: 34 MLETMYATDGVGLAAPQVGISLRMFVCD-VGTPEESQVKKIINPIITPLTEENISVEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ V+R +KI ++ G + L PA V QHE+DHL+ LF +R++
Sbjct: 93 LSVPGIYRKVDRIAKIKISYQNEMGEKIEEILEGFPAIVVQHEYDHLEATLFVDRVS 149
>gi|237749120|ref|ZP_04579600.1| peptide deformylase [Oxalobacter formigenes OXCC13]
gi|229380482|gb|EEO30573.1| peptide deformylase [Oxalobacter formigenes OXCC13]
Length = 208
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 77/128 (60%), Gaps = 2/128 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY+ G+GL+APQ+ ++ QL+V + ++ E V +NP++ K S + +EEGC
Sbjct: 64 MAQTMYEAPGVGLAAPQINVHKQLIVIDVSEQKNELR--VFINPQIVKASEEKAIFEEGC 121
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+ ++ERP V + A D NG F + L A QHE DHL+G +F + ++
Sbjct: 122 LSLPGIYDEIERPAKVTVRALDANGKEFELEAEGLLAVCVQHEIDHLKGSIFVDYLSPMK 181
Query: 121 LDSIREQL 128
+ I+++L
Sbjct: 182 RNRIKKKL 189
>gi|15835247|ref|NP_297006.1| peptide deformylase [Chlamydia muridarum Nigg]
gi|270285419|ref|ZP_06194813.1| peptide deformylase [Chlamydia muridarum Nigg]
gi|270289433|ref|ZP_06195735.1| peptide deformylase [Chlamydia muridarum Weiss]
gi|301336816|ref|ZP_07225018.1| peptide deformylase [Chlamydia muridarum MopnTet14]
gi|13878461|sp|Q9PK41.1|DEF_CHLMU RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|7190671|gb|AAF39461.1| polypeptide deformylase [Chlamydia muridarum Nigg]
Length = 181
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M + M G+GL+APQVG +V L + E +GE I V +NP + + S +++
Sbjct: 34 MSETMTFYKGVGLAAPQVGHSVALFIMGVEKELDDGELIFCDFPKVFINPVITQKSEQLV 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
EGCLS PG+ +V RP+ + + A++++G FS++L AR+ HE DHL G+L+ +
Sbjct: 94 YGNEGCLSIPGLRGEVARPDKITVTAKNLDGQPFSMTLEGFLARIVMHETDHLHGVLYID 153
Query: 115 RMTD 118
RM+D
Sbjct: 154 RMSD 157
>gi|312111728|ref|YP_003990044.1| peptide deformylase [Geobacillus sp. Y4.1MC1]
gi|311216829|gb|ADP75433.1| peptide deformylase [Geobacillus sp. Y4.1MC1]
Length = 157
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 71/116 (61%), Gaps = 4/116 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M DG+GL+APQVGI Q+ V + E G I L+NPR+ + + I EGC
Sbjct: 35 MYDTMIDADGVGLAAPQVGIAKQIAVVDVGDEHGR---IELINPRIMEARGEQIG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LSFPG+ A+V+R VK+ A+D G F++ + AR QHE DHL GILF ++
Sbjct: 91 LSFPGLFAEVKRANYVKVRAQDRRGRPFTLKATGFLARALQHEIDHLNGILFTSKV 146
>gi|398947746|ref|ZP_10672382.1| peptide deformylase [Pseudomonas sp. GM33]
gi|426406931|ref|YP_007027030.1| peptide deformylase [Pseudomonas sp. UW4]
gi|169123281|gb|ACA47112.1| peptide deformylase [Pseudomonas putida]
gi|398161658|gb|EJM49885.1| peptide deformylase [Pseudomonas sp. GM33]
gi|426265148|gb|AFY17225.1| peptide deformylase [Pseudomonas sp. UW4]
Length = 168
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + ++ M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRTEPR--VFINPELEPLTDDMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VK+ A D +G + + DL A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQRVKVKALDRDGKPYELIAEDLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|398869699|ref|ZP_10625057.1| peptide deformylase [Pseudomonas sp. GM74]
gi|398210548|gb|EJM97192.1| peptide deformylase [Pseudomonas sp. GM74]
Length = 168
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSEPR--VFINPEFEPLTDEMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VK+ A D +G + + DL A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQRVKVKALDRDGQPYELIAEDLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|418407893|ref|ZP_12981210.1| peptide deformylase [Agrobacterium tumefaciens 5A]
gi|358005879|gb|EHJ98204.1| peptide deformylase [Agrobacterium tumefaciens 5A]
Length = 170
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 71/117 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QVG+ +++V + E E + +V +NP + K S+ + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQVGVPRRMLVIDVSREDEEKKPVVFINPEILKVSDDVSAYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP S+ + D +G + +V L A QHE DHL GILF + ++
Sbjct: 95 LSIPDYYAEVERPASLTVRYVDRDGKQQTVDADGLLATCLQHEIDHLNGILFIDHIS 151
>gi|227820644|ref|YP_002824614.1| peptide deformylase [Sinorhizobium fredii NGR234]
gi|227339643|gb|ACP23861.1| peptide deformylase [Sinorhizobium fredii NGR234]
Length = 174
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 71/117 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +L+V + E E +V +NP++ K S + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRLLVLDVSKEGEEKTPLVFINPKIVKSSEERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP ++ ++ D +G + SV L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAAIAVEYLDRDGKQQSVEADGLLATCLQHEIDHLNGVLFIDYIS 151
>gi|254453655|ref|ZP_05067092.1| peptide deformylase [Octadecabacter arcticus 238]
gi|198268061|gb|EDY92331.1| peptide deformylase [Octadecabacter arcticus 238]
Length = 159
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 76/129 (58%), Gaps = 6/129 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+GI +++V + + + E + +VL+NPRV S++ Y+EG
Sbjct: 19 MLETMYDAPGIGLAAPQLGIMQRMLVMDCIKDDMETPQPMVLINPRVIAASSETNIYDEG 78
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +A+VER VK++ D+NG SDL A QHE DHL G LF D
Sbjct: 79 CLSIPEQYAEVERSAVVKVEWMDLNGKTQQDEFSDLWATCVQHEIDHLNGKLFI-----D 133
Query: 120 VLDSIREQL 128
L ++ Q+
Sbjct: 134 YLKPLKRQM 142
>gi|163795436|ref|ZP_02189403.1| N-formylmethionyl-tRNA deformylase [alpha proteobacterium BAL199]
gi|159179422|gb|EDP63953.1| N-formylmethionyl-tRNA deformylase [alpha proteobacterium BAL199]
Length = 175
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 70/117 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY G+GL+APQVG+ +++V + G+ + + I LVNP + S+ YEEGC
Sbjct: 35 MFQTMYFAPGVGLAAPQVGVTKRVIVVDVAGKDEKPQPIALVNPEIVWRSDATQIYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P ++ADVER VK+ D +GA + L A QHE DH+ G+LF + ++
Sbjct: 95 LSLPELYADVERASHVKVRYLDRDGAEQKIEGEGLLAVCLQHEIDHIDGVLFVDHIS 151
>gi|17988608|ref|NP_541241.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
gi|23500757|ref|NP_700197.1| peptide deformylase [Brucella suis 1330]
gi|62317863|ref|YP_223716.1| peptide deformylase [Brucella abortus bv. 1 str. 9-941]
gi|83269841|ref|YP_419132.1| peptide deformylase [Brucella melitensis biovar Abortus 2308]
gi|148557936|ref|YP_001257946.1| peptide deformylase [Brucella ovis ATCC 25840]
gi|161621082|ref|YP_001594968.1| peptide deformylase [Brucella canis ATCC 23365]
gi|163845148|ref|YP_001622803.1| peptide deformylase [Brucella suis ATCC 23445]
gi|225629484|ref|ZP_03787517.1| peptide deformylase [Brucella ceti str. Cudo]
gi|225686789|ref|YP_002734761.1| peptide deformylase [Brucella melitensis ATCC 23457]
gi|237817404|ref|ZP_04596396.1| peptide deformylase [Brucella abortus str. 2308 A]
gi|256015794|ref|YP_003105803.1| peptide deformylase [Brucella microti CCM 4915]
gi|340792797|ref|YP_004758261.1| peptide deformylase [Brucella pinnipedialis B2/94]
gi|376278980|ref|YP_005109013.1| peptide deformylase [Brucella suis VBI22]
gi|384223540|ref|YP_005614705.1| peptide deformylase [Brucella suis 1330]
gi|17984410|gb|AAL53505.1| polypeptide deformylase [Brucella melitensis bv. 1 str. 16M]
gi|23464412|gb|AAN34202.1| polypeptide deformylase [Brucella suis 1330]
gi|62198056|gb|AAX76355.1| Def-2, polypeptide deformylase [Brucella abortus bv. 1 str. 9-941]
gi|82940115|emb|CAJ13163.1| Formylmethionine deformylase [Brucella melitensis biovar Abortus
2308]
gi|148369221|gb|ABQ62093.1| peptide deformylase [Brucella ovis ATCC 25840]
gi|161337893|gb|ABX64197.1| peptide deformylase [Brucella canis ATCC 23365]
gi|163675871|gb|ABY39981.1| peptide deformylase [Brucella suis ATCC 23445]
gi|225615980|gb|EEH13029.1| peptide deformylase [Brucella ceti str. Cudo]
gi|225642894|gb|ACO02807.1| peptide deformylase [Brucella melitensis ATCC 23457]
gi|237788217|gb|EEP62433.1| peptide deformylase [Brucella abortus str. 2308 A]
gi|255998454|gb|ACU50141.1| peptide deformylase [Brucella microti CCM 4915]
gi|340561256|gb|AEK56493.1| peptide deformylase [Brucella pinnipedialis B2/94]
gi|343384988|gb|AEM20479.1| peptide deformylase [Brucella suis 1330]
gi|358260418|gb|AEU08151.1| peptide deformylase [Brucella suis VBI22]
Length = 187
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 70/117 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY GIGL+A QVG ++++V + E + VNP + + S+K YEEGC
Sbjct: 47 MFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGC 106
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP +VK++ D +G S+ L A QHE DHL G+LF + ++
Sbjct: 107 LSIPDYYAEVERPATVKVNYFDADGKPQSMEADGLMATCLQHEIDHLNGVLFIDHIS 163
>gi|189023113|ref|YP_001932854.1| peptide deformylase [Brucella abortus S19]
gi|256262077|ref|ZP_05464609.1| peptide deformylase [Brucella melitensis bv. 2 str. 63/9]
gi|260545098|ref|ZP_05820919.1| peptide deformylase [Brucella abortus NCTC 8038]
gi|260565079|ref|ZP_05835564.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
gi|260567720|ref|ZP_05838189.1| peptide deformylase [Brucella suis bv. 4 str. 40]
gi|260756222|ref|ZP_05868570.1| polypeptide deformylase [Brucella abortus bv. 6 str. 870]
gi|260760409|ref|ZP_05872757.1| polypeptide deformylase [Brucella abortus bv. 4 str. 292]
gi|260763649|ref|ZP_05875981.1| polypeptide deformylase [Brucella abortus bv. 2 str. 86/8/59]
gi|260882046|ref|ZP_05893660.1| peptide deformylase [Brucella abortus bv. 9 str. C68]
gi|261216476|ref|ZP_05930757.1| polypeptide deformylase [Brucella abortus bv. 3 str. Tulya]
gi|261220844|ref|ZP_05935125.1| peptide deformylase [Brucella ceti B1/94]
gi|261312913|ref|ZP_05952110.1| peptide deformylase [Brucella pinnipedialis M163/99/10]
gi|261318308|ref|ZP_05957505.1| peptide deformylase [Brucella pinnipedialis B2/94]
gi|261322743|ref|ZP_05961940.1| peptide deformylase [Brucella neotomae 5K33]
gi|261750724|ref|ZP_05994433.1| peptide deformylase [Brucella suis bv. 5 str. 513]
gi|261753980|ref|ZP_05997689.1| peptide deformylase [Brucella suis bv. 3 str. 686]
gi|261757222|ref|ZP_06000931.1| peptide deformylase [Brucella sp. F5/99]
gi|265986106|ref|ZP_06098663.1| peptide deformylase [Brucella pinnipedialis M292/94/1]
gi|265990325|ref|ZP_06102882.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1]
gi|265992568|ref|ZP_06105125.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether]
gi|265995800|ref|ZP_06108357.1| peptide deformylase [Brucella ceti M490/95/1]
gi|294853988|ref|ZP_06794660.1| polypeptide deformylase [Brucella sp. NVSL 07-0026]
gi|297249202|ref|ZP_06932903.1| polypeptide deformylase [Brucella abortus bv. 5 str. B3196]
gi|376271532|ref|YP_005114577.1| peptide deformylase [Brucella abortus A13334]
gi|376277456|ref|YP_005153517.1| peptide deformylase [Brucella canis HSK A52141]
gi|384213548|ref|YP_005602631.1| peptide deformylase [Brucella melitensis M5-90]
gi|384410650|ref|YP_005599270.1| peptide deformylase [Brucella melitensis M28]
gi|384447147|ref|YP_005661365.1| peptide deformylase [Brucella melitensis NI]
gi|423168232|ref|ZP_17154934.1| peptide deformylase [Brucella abortus bv. 1 str. NI435a]
gi|423172333|ref|ZP_17159007.1| peptide deformylase [Brucella abortus bv. 1 str. NI474]
gi|423173936|ref|ZP_17160606.1| peptide deformylase [Brucella abortus bv. 1 str. NI486]
gi|423175812|ref|ZP_17162478.1| peptide deformylase [Brucella abortus bv. 1 str. NI488]
gi|423181762|ref|ZP_17168402.1| peptide deformylase [Brucella abortus bv. 1 str. NI010]
gi|423184895|ref|ZP_17171531.1| peptide deformylase [Brucella abortus bv. 1 str. NI016]
gi|423188048|ref|ZP_17174661.1| peptide deformylase [Brucella abortus bv. 1 str. NI021]
gi|423190465|ref|ZP_17177074.1| peptide deformylase [Brucella abortus bv. 1 str. NI259]
gi|54036953|sp|P63914.1|DEF_BRUSU RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|54040741|sp|P63913.1|DEF_BRUME RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|189021687|gb|ACD74408.1| Formylmethionine deformylase [Brucella abortus S19]
gi|260098369|gb|EEW82243.1| peptide deformylase [Brucella abortus NCTC 8038]
gi|260152722|gb|EEW87815.1| peptide deformylase [Brucella melitensis bv. 1 str. 16M]
gi|260154385|gb|EEW89466.1| peptide deformylase [Brucella suis bv. 4 str. 40]
gi|260670727|gb|EEX57667.1| polypeptide deformylase [Brucella abortus bv. 4 str. 292]
gi|260674070|gb|EEX60891.1| polypeptide deformylase [Brucella abortus bv. 2 str. 86/8/59]
gi|260676330|gb|EEX63151.1| polypeptide deformylase [Brucella abortus bv. 6 str. 870]
gi|260871574|gb|EEX78643.1| peptide deformylase [Brucella abortus bv. 9 str. C68]
gi|260918083|gb|EEX84944.1| polypeptide deformylase [Brucella abortus bv. 3 str. Tulya]
gi|260919428|gb|EEX86081.1| peptide deformylase [Brucella ceti B1/94]
gi|261297531|gb|EEY01028.1| peptide deformylase [Brucella pinnipedialis B2/94]
gi|261298723|gb|EEY02220.1| peptide deformylase [Brucella neotomae 5K33]
gi|261301939|gb|EEY05436.1| peptide deformylase [Brucella pinnipedialis M163/99/10]
gi|261737206|gb|EEY25202.1| peptide deformylase [Brucella sp. F5/99]
gi|261740477|gb|EEY28403.1| peptide deformylase [Brucella suis bv. 5 str. 513]
gi|261743733|gb|EEY31659.1| peptide deformylase [Brucella suis bv. 3 str. 686]
gi|262550097|gb|EEZ06258.1| peptide deformylase [Brucella ceti M490/95/1]
gi|262763438|gb|EEZ09470.1| peptide deformylase [Brucella melitensis bv. 3 str. Ether]
gi|263000994|gb|EEZ13684.1| peptide deformylase [Brucella melitensis bv. 1 str. Rev.1]
gi|263091766|gb|EEZ16097.1| peptide deformylase [Brucella melitensis bv. 2 str. 63/9]
gi|264658303|gb|EEZ28564.1| peptide deformylase [Brucella pinnipedialis M292/94/1]
gi|294819643|gb|EFG36643.1| polypeptide deformylase [Brucella sp. NVSL 07-0026]
gi|297173071|gb|EFH32435.1| polypeptide deformylase [Brucella abortus bv. 5 str. B3196]
gi|326411197|gb|ADZ68261.1| peptide deformylase [Brucella melitensis M28]
gi|326554488|gb|ADZ89127.1| peptide deformylase [Brucella melitensis M5-90]
gi|349745144|gb|AEQ10686.1| peptide deformylase [Brucella melitensis NI]
gi|363402704|gb|AEW19673.1| peptide deformylase [Brucella abortus A13334]
gi|363405830|gb|AEW16124.1| peptide deformylase [Brucella canis HSK A52141]
gi|374536755|gb|EHR08275.1| peptide deformylase [Brucella abortus bv. 1 str. NI474]
gi|374538725|gb|EHR10232.1| peptide deformylase [Brucella abortus bv. 1 str. NI435a]
gi|374539937|gb|EHR11439.1| peptide deformylase [Brucella abortus bv. 1 str. NI486]
gi|374546352|gb|EHR17812.1| peptide deformylase [Brucella abortus bv. 1 str. NI010]
gi|374547195|gb|EHR18654.1| peptide deformylase [Brucella abortus bv. 1 str. NI016]
gi|374554228|gb|EHR25641.1| peptide deformylase [Brucella abortus bv. 1 str. NI021]
gi|374556505|gb|EHR27910.1| peptide deformylase [Brucella abortus bv. 1 str. NI259]
gi|374556612|gb|EHR28016.1| peptide deformylase [Brucella abortus bv. 1 str. NI488]
Length = 175
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 70/117 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY GIGL+A QVG ++++V + E + VNP + + S+K YEEGC
Sbjct: 35 MFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP +VK++ D +G S+ L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPATVKVNYFDADGKPQSMEADGLMATCLQHEIDHLNGVLFIDHIS 151
>gi|338210328|ref|YP_004654375.1| peptide deformylase [Runella slithyformis DSM 19594]
gi|336304141|gb|AEI47243.1| Peptide deformylase [Runella slithyformis DSM 19594]
Length = 190
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 75/123 (60%), Gaps = 11/123 (8%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERG---------EGEEIVLVNPRVNKY 49
M+ MY + GIGL+APQ+G +++L V + P+ E EG + V +NP + +
Sbjct: 34 MYQTMYDSSGIGLAAPQIGQSIRLFVVDGTPLNEDEQEEDKDPSLEGFKKVFINPEMLEE 93
Query: 50 SNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQG 109
+ + +EEGCLS PGI ADV RPE+VKI RD++ + + AR+ QHE+DHL+G
Sbjct: 94 TGEEWGFEEGCLSIPGIRADVYRPETVKIKYRDMDWNEHVETYGGMAARIIQHEYDHLEG 153
Query: 110 ILF 112
LF
Sbjct: 154 KLF 156
>gi|306840227|ref|ZP_07473002.1| peptide deformylase [Brucella sp. BO2]
gi|306289832|gb|EFM61011.1| peptide deformylase [Brucella sp. BO2]
Length = 175
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 70/117 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY GIGL+A QVG ++++V + E + VNP + + S+K YEEGC
Sbjct: 35 MFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP +VK++ D +G S+ L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPATVKVNYFDADGKPQSMEADGLMATCLQHEIDHLNGVLFIDHIS 151
>gi|262376937|ref|ZP_06070164.1| peptide deformylase [Acinetobacter lwoffii SH145]
gi|262308282|gb|EEY89418.1| peptide deformylase [Acinetobacter lwoffii SH145]
Length = 176
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++QL+V + + + +V +NP++ + + PYEEGC
Sbjct: 35 MFETMYEAPGIGLAATQVDRHIQLIVMD--LSENKDQPMVFINPKITPLTEETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ V+RP VKI+A ++ G F + L A QHE DHL G LF + ++
Sbjct: 93 LSVPQIYDKVDRPSRVKIEAINLEGQAFELDADGLLAVCIQHEMDHLNGKLFVDYLSPLK 152
Query: 121 LDSIREQLE 129
RE++E
Sbjct: 153 RQRAREKVE 161
>gi|28867417|ref|NP_790036.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213968425|ref|ZP_03396568.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1]
gi|301384287|ref|ZP_07232705.1| peptide deformylase [Pseudomonas syringae pv. tomato Max13]
gi|302060151|ref|ZP_07251692.1| peptide deformylase [Pseudomonas syringae pv. tomato K40]
gi|302130424|ref|ZP_07256414.1| peptide deformylase [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|422659065|ref|ZP_16721494.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
M302278]
gi|32363153|sp|Q88B43.1|DEF1_PSESM RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|28850651|gb|AAO53731.1| polypeptide deformylase [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213926713|gb|EEB60265.1| polypeptide deformylase [Pseudomonas syringae pv. tomato T1]
gi|331017687|gb|EGH97743.1| peptide deformylase [Pseudomonas syringae pv. lachrymans str.
M302278]
Length = 168
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 81/129 (62%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R +V +NP + K +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSA--PMVFINPEIEKLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V++ A D +G + + L A QHE DHL G LF + +++
Sbjct: 93 LSVPGFYENVDRPQKVRVKALDRDGKPYELVAEGLLAICIQHECDHLNGKLFVDYLSNLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|85705033|ref|ZP_01036133.1| peptide deformylase [Roseovarius sp. 217]
gi|85670355|gb|EAQ25216.1| peptide deformylase [Roseovarius sp. 217]
Length = 172
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 72/129 (55%), Gaps = 6/129 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
MF+ MY GIGL+APQVG+ +L+V + V + G I ++NP + +S++ YEEG
Sbjct: 34 MFETMYDAPGIGLAAPQVGVMDRLIVLDCVKDEGATPRPIAMLNPEITAFSDQTSVYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P ADV RP V++ D++G L A QHE DHL G LF D
Sbjct: 94 CLSIPDQFADVTRPAEVEVRWMDLDGVEHKEGFGGLWATCVQHEIDHLDGKLFI-----D 148
Query: 120 VLDSIREQL 128
L +++ QL
Sbjct: 149 YLSAMKRQL 157
>gi|407009727|gb|EKE24809.1| hypothetical protein ACD_6C00031G0003 [uncultured bacterium]
Length = 176
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++QL+V + + + +V +NP++ + + PYEEGC
Sbjct: 35 MFETMYEAPGIGLAATQVDRHIQLIVMD--LSENKDQPMVFINPKITPLTEETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ V+RP VKI+A ++ G F + L A QHE DHL G LF + ++
Sbjct: 93 LSVPQIYDKVDRPSRVKIEAINLEGQAFELDADGLLAVCIQHEMDHLNGKLFVDYLSPLK 152
Query: 121 LDSIREQLE 129
RE++E
Sbjct: 153 RQRAREKVE 161
>gi|406917422|gb|EKD56220.1| Peptide deformylase [uncultured bacterium]
Length = 165
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 74/128 (57%), Gaps = 12/128 (9%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV--FNPVGERGEGEEI----------VLVNPRVNK 48
M + ++ G+GL+APQ+G N++L+V F+PV + E +LVNP++
Sbjct: 34 MVETLHANKGVGLAAPQIGKNIKLIVIEFDPVKYYNKEELTKKSNKPIPLTILVNPKIIS 93
Query: 49 YSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
YSN EGCLS P + +V R + +KI ++DI+G R + SD ARV QHE DHL
Sbjct: 94 YSNDKTTEIEGCLSCPEVEVEVIRSKKIKIISQDISGKRIKIKASDFYARVLQHEIDHLN 153
Query: 109 GILFFERM 116
GIL + +
Sbjct: 154 GILITDNI 161
>gi|195953865|ref|YP_002122155.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1]
gi|195933477|gb|ACG58177.1| peptide deformylase [Hydrogenobaculum sp. Y04AAS1]
Length = 171
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 73/119 (61%), Gaps = 3/119 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI--VLVNPRVNKYSNKMIPYEE 58
M + MYK DGIGL+A QV I + +MV + + E+ VL+NP V + I ++E
Sbjct: 33 MKETMYKNDGIGLAANQVNIPLSIMVIDTTSREDDQEKFKDVLINPTVLAKEGE-IKFKE 91
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
GCLSFPG+ +V R + + I A + ++LS LPA VFQHEFDHL GI F +R++
Sbjct: 92 GCLSFPGLQVEVIRAKEITIKAINECEEEVILNLSGLPAIVFQHEFDHLNGITFLDRLS 150
>gi|94499926|ref|ZP_01306462.1| peptide deformylase [Bermanella marisrubri]
gi|94428127|gb|EAT13101.1| peptide deformylase [Oceanobacter sp. RED65]
Length = 171
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ Q++V + +R E V +NP+V + +EGC
Sbjct: 35 MFETMYDCPGIGLAATQVNVHEQIIVMDISEDRSEPH--VFINPKVTVLDGEPEKMQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + DVER E KI+A D NG + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYEDVERIEHCKIEALDRNGQPYELEARGLLAVCIQHEMDHLNGKLFVDYLSTTK 152
Query: 121 LDSIREQLE 129
D IR++LE
Sbjct: 153 RDRIRKKLE 161
>gi|329114447|ref|ZP_08243209.1| Peptide deformylase [Acetobacter pomorum DM001]
gi|326696523|gb|EGE48202.1| Peptide deformylase [Acetobacter pomorum DM001]
Length = 275
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY+ GIGL+APQVG++ + ++ + +GE+ + IV++NP V + M EEGC
Sbjct: 142 MFSAMYQAPGIGLAAPQVGLSQRFLLVD-LGEKDARDPIVMINPEVIAETEDMAVREEGC 200
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+V RPE +++ +ING L A QHE DHL+G+LF + ++
Sbjct: 201 LSLPNQYAEVVRPEKIRVRWNNINGDVVEREAEGLLATCIQHEIDHLEGVLFVDHLS 257
>gi|288958776|ref|YP_003449117.1| peptide deformylase 2 [Azospirillum sp. B510]
gi|288911084|dbj|BAI72573.1| peptide deformylase 2 [Azospirillum sp. B510]
Length = 190
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 69/121 (57%), Gaps = 3/121 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI---VLVNPRVNKYSNKMIPYE 57
M M G+GL+APQV + +++VF +RGEGEE+ VLVNP + ++ M
Sbjct: 36 MIATMLDAPGVGLAAPQVSESCRIIVFRVPADRGEGEEVANTVLVNPVIEPLTDDMALGW 95
Query: 58 EGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
EGCLS PG+ V R ++ ++GAR S ARV QHE DHL G+L+ +RM
Sbjct: 96 EGCLSIPGLRGLVPRHTRIRYRGHGLDGARIEREASGFHARVVQHEVDHLDGVLYLDRMD 155
Query: 118 D 118
D
Sbjct: 156 D 156
>gi|406901245|gb|EKD43962.1| Peptide deformylase [uncultured bacterium]
Length = 166
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 71/119 (59%), Gaps = 7/119 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV----FNPVGERGEGEEIVLVNPRVNKYSNKMIPY 56
M + MY DG+G++APQV ++QL V F+P+ R E++VLVNP K S K
Sbjct: 37 MTETMYVKDGVGIAAPQVNESIQLCVIGKQFSPINIR---EDLVLVNPTWTKLSIKKAWD 93
Query: 57 EEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
EGCLS P ++ DV+R +K+ A + +G D PAR+ QHE DHL G+LF E+
Sbjct: 94 SEGCLSVPFVYGDVKRYVKIKVKALNQHGEPIEFVAQDFPARIVQHEVDHLNGVLFIEK 152
>gi|219685342|ref|ZP_03540161.1| peptide deformylase [Borrelia garinii Far04]
gi|219673115|gb|EED30135.1| peptide deformylase [Borrelia garinii Far04]
Length = 165
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 77/125 (61%), Gaps = 7/125 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E +V +NP + + S ++ Y EGC
Sbjct: 32 MIELMDISGGVGLAAPQVGLDLSLFV---VRENRMARPLVFINPSIIETSYELNSYREGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFF----ERM 116
LS PG++ D+ RP+ + ++ D NG F++ SD AR+ QHE DHL GILF ER+
Sbjct: 89 LSIPGVYYDLMRPKGIVVNFYDENGKSFTIEDSDFLARIIQHEMDHLNGILFIDYYEERI 148
Query: 117 TDDVL 121
+ +L
Sbjct: 149 KNKLL 153
>gi|288817601|ref|YP_003431948.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
gi|384128361|ref|YP_005510974.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
gi|288787000|dbj|BAI68747.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
gi|308751198|gb|ADO44681.1| peptide deformylase [Hydrogenobacter thermophilus TK-6]
Length = 169
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 72/117 (61%), Gaps = 2/117 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVG-ERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
MF+ MY +G+GL+A Q+GI++ +MV + E + V++NP + + + + Y+EG
Sbjct: 34 MFETMYHAEGVGLAANQIGISLSIMVIDTSKKEDSPLLKAVMINPELLEAEGE-VKYKEG 92
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
CLSFPG+ +V R VK+ A DING L PA VFQHE DHL GI F +R+
Sbjct: 93 CLSFPGLSVEVSRYSKVKVKALDINGEEKLYLLEGFPAIVFQHEMDHLMGITFIDRV 149
>gi|398920310|ref|ZP_10659227.1| peptide deformylase [Pseudomonas sp. GM49]
gi|398168319|gb|EJM56340.1| peptide deformylase [Pseudomonas sp. GM49]
Length = 168
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRTEPR--VFINPEFEPLTDEMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VK+ A D +G + + DL A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQRVKVKALDRDGQPYELIAEDLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|262067438|ref|ZP_06027050.1| peptide deformylase [Fusobacterium periodonticum ATCC 33693]
gi|291378801|gb|EFE86319.1| peptide deformylase [Fusobacterium periodonticum ATCC 33693]
Length = 174
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 72/117 (61%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+TDGIGL+APQVG++ ++ V + G G+ L+NP + + + +EEGC
Sbjct: 36 MVETMYETDGIGLAAPQVGVSKRIFVCDD----GTGKIRKLINPIIEPLTEETQEFEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ VERP+ V + + NG DL A V QHE DHL GILF E+++
Sbjct: 92 LSVPGIYKKVERPKKVMLKYINENGEAVEEIAEDLLAVVVQHENDHLNGILFVEKIS 148
>gi|397691411|ref|YP_006528665.1| peptide deformylase [Melioribacter roseus P3M]
gi|395812903|gb|AFN75652.1| peptide deformylase [Melioribacter roseus P3M]
Length = 180
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 80/131 (61%), Gaps = 2/131 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG--EGEEIVLVNPRVNKYSNKMIPYEE 58
MF+ M K G+GL+A QVGI+ + V + G + + +V++NP + + S++ + EE
Sbjct: 35 MFETMRKAYGVGLAANQVGIDKSIFVIDLKDVEGYEKFKPLVMINPEIIEESDEFVSMEE 94
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
GCLS P + ADVERP+ +K+ D + + SD ARV HE+DHL G + +R+ D
Sbjct: 95 GCLSLPTLRADVERPKEIKVRYLDTDENIQEMEASDFLARVILHEYDHLIGKMIPDRVAD 154
Query: 119 DVLDSIREQLE 129
+V ++EQLE
Sbjct: 155 EVKKQLKEQLE 165
>gi|422874664|ref|ZP_16921149.1| peptide deformylase [Clostridium perfringens F262]
gi|380304305|gb|EIA16594.1| peptide deformylase [Clostridium perfringens F262]
Length = 147
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 70/114 (61%), Gaps = 4/114 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ +G+GL+APQVGI ++ V + + E G V +NP + + S + EEGC
Sbjct: 35 MIETMYENNGVGLAAPQVGILKRIFVVDAMDEAGSR---VFINPEILEKSGEQTD-EEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
LS PG H V+R +KI A D+NG F + + AR QHE+DHL+G+LF +
Sbjct: 91 LSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEEFLARAIQHEYDHLEGVLFID 144
>gi|42527153|ref|NP_972251.1| polypeptide deformylase [Treponema denticola ATCC 35405]
gi|422342128|ref|ZP_16423068.1| polypeptide deformylase [Treponema denticola F0402]
gi|449102526|ref|ZP_21739274.1| peptide deformylase [Treponema denticola AL-2]
gi|449107492|ref|ZP_21744146.1| peptide deformylase [Treponema denticola ASLM]
gi|449111787|ref|ZP_21748356.1| peptide deformylase [Treponema denticola ATCC 33521]
gi|449113406|ref|ZP_21749911.1| peptide deformylase [Treponema denticola ATCC 35404]
gi|449115975|ref|ZP_21752435.1| peptide deformylase [Treponema denticola H-22]
gi|449123711|ref|ZP_21760033.1| peptide deformylase [Treponema denticola OTK]
gi|449131381|ref|ZP_21767597.1| peptide deformylase [Treponema denticola SP37]
gi|451969184|ref|ZP_21922413.1| peptide deformylase [Treponema denticola US-Trep]
gi|41817577|gb|AAS12162.1| polypeptide deformylase [Treponema denticola ATCC 35405]
gi|325474196|gb|EGC77384.1| polypeptide deformylase [Treponema denticola F0402]
gi|448940214|gb|EMB21125.1| peptide deformylase [Treponema denticola SP37]
gi|448943964|gb|EMB24846.1| peptide deformylase [Treponema denticola OTK]
gi|448955461|gb|EMB36228.1| peptide deformylase [Treponema denticola H-22]
gi|448957058|gb|EMB37811.1| peptide deformylase [Treponema denticola ATCC 33521]
gi|448959616|gb|EMB40335.1| peptide deformylase [Treponema denticola ATCC 35404]
gi|448961692|gb|EMB42387.1| peptide deformylase [Treponema denticola ASLM]
gi|448966115|gb|EMB46773.1| peptide deformylase [Treponema denticola AL-2]
gi|451702052|gb|EMD56486.1| peptide deformylase [Treponema denticola US-Trep]
Length = 169
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 79/120 (65%), Gaps = 7/120 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQL-MVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
MF + K +GIGL+APQVG N++L +VF + E ++ V +NP + + S +M EEG
Sbjct: 32 MFVTVKKENGIGLAAPQVGENIRLFIVF--INE----QKYVFINPEIIETSQEMCLMEEG 85
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P ++ +V RP +VK+ +I+G ++ S L ARV QHE DHL GILF +R++++
Sbjct: 86 CLSIPKVYDEVMRPSAVKVQFLNIDGKIKTIEASGLLARVIQHENDHLNGILFIDRLSEE 145
>gi|406980382|gb|EKE01992.1| hypothetical protein ACD_21C00010G0003 [uncultured bacterium]
Length = 170
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGE-GEEIVLVNPRVNKYSNKMIPYEEG 59
M + M +GIGL+APQVGIN+ L V + GE E GE +VL NP + S E+G
Sbjct: 54 MIETMIHNNGIGLAAPQVGINLNLFVIS--GEATEKGEHLVLCNPTITFQSATTHIMEQG 111
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
CLS P + DV RPE +++ A ++G + L A VFQHE DHL+G L ++
Sbjct: 112 CLSCPTLFGDVRRPEKIRVKAYTLDGKKHVFKAKGLLAVVFQHEIDHLRGTLIIDK 167
>gi|408673453|ref|YP_006873201.1| Peptide deformylase [Emticicia oligotrophica DSM 17448]
gi|387855077|gb|AFK03174.1| Peptide deformylase [Emticicia oligotrophica DSM 17448]
Length = 191
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 12/129 (9%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGEGEE----------IVLVNPRVNK 48
MF+ MY G+GL+APQ+G+++++ V + P+ E E +E V +N + +
Sbjct: 34 MFETMYAASGVGLAAPQIGMDIRVFVVDGTPINESAETDEDIDPSLIDFKKVFINAEIIE 93
Query: 49 YSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
S + YEEGCLS PG+ ADV RPE VKI D + + AR+ QHE+DH+
Sbjct: 94 ESGEEWAYEEGCLSIPGVRADVYRPEFVKIRYFDTDWNEHIEDYEGMAARIIQHEYDHID 153
Query: 109 GILFFERMT 117
GILF + ++
Sbjct: 154 GILFTDHLS 162
>gi|157363555|ref|YP_001470322.1| peptide deformylase [Thermotoga lettingae TMO]
gi|167012066|sp|A8F524.1|DEF_THELT RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|157314159|gb|ABV33258.1| peptide deformylase [Thermotoga lettingae TMO]
Length = 171
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 77/128 (60%), Gaps = 6/128 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
+F+ MY TDGIGL+APQ+G+++++ V + +G+ V +NP + S + EEGC
Sbjct: 34 LFETMYATDGIGLAAPQIGVSLRIFVMD------DGKPRVFINPEIIYKSEEKEIAEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + DVER + V + + +G S D ARV QHE+DHLQG+LF + +
Sbjct: 88 LSVPEVFEDVERSKEVTVRYMNEHGEEVEESFVDYSARVVQHEYDHLQGVLFIDLIPSSR 147
Query: 121 LDSIREQL 128
+IR++L
Sbjct: 148 RFAIRKKL 155
>gi|406998381|gb|EKE16315.1| hypothetical protein ACD_11C00020G0020 [uncultured bacterium]
Length = 152
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M M +G+GL+APQ+G +++L V G+ VL+NP+V YS K + EEGC
Sbjct: 35 MLATMRSANGMGLAAPQIGESIRLCVIEE-----NGKTYVLMNPKVTAYSKKKVLMEEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LSFPG + RPE VKI D G + L AR QHE DHL GIL +R+
Sbjct: 90 LSFPGEFFQISRPEEVKIRYIDKEGKNAKLKADGLLARALQHEIDHLDGILITDRV 145
>gi|51598326|ref|YP_072514.1| peptide deformylase [Borrelia garinii PBi]
gi|51572897|gb|AAU06922.1| polypeptide deformylase [Borrelia garinii PBi]
Length = 186
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 76/125 (60%), Gaps = 7/125 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ L V V E +V +NP + + S ++ Y+EGC
Sbjct: 53 MIELMDISGGVGLAAPQVGLDLSLFV---VRENRMARPLVFINPSITETSYELNSYKEGC 109
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFF----ERM 116
LS PG++ ++ RP + + D NG F++ SD AR+ QHE DHL GILF ER+
Sbjct: 110 LSIPGVYYNLMRPNGIVVKFYDENGKSFTIENSDFLARIIQHEMDHLNGILFIDYYEERI 169
Query: 117 TDDVL 121
+ +L
Sbjct: 170 KNKLL 174
>gi|333995693|ref|YP_004528306.1| peptide deformylase [Treponema azotonutricium ZAS-9]
gi|333735210|gb|AEF81159.1| peptide deformylase [Treponema azotonutricium ZAS-9]
Length = 177
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 72/118 (61%), Gaps = 4/118 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
+ ++ DG+GL+ PQVG ++ + G+ E + +NP + + S I YEEGC
Sbjct: 32 LIQALHDGDGVGLAGPQVGFMERIFAVHIHGD----EARIFINPSIIETSQDTIKYEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS PG +ADV RP+++KI A + G F++ S + ARV QHE+DHL G LF + +++
Sbjct: 88 LSIPGYYADVVRPKTIKIQAWNEKGRPFTLEASGMLARVIQHEYDHLDGTLFIDHISE 145
>gi|333898252|ref|YP_004472125.1| peptide deformylase [Pseudomonas fulva 12-X]
gi|333113517|gb|AEF20031.1| Peptide deformylase [Pseudomonas fulva 12-X]
Length = 168
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ +++V + ++ E +V +NP +++M Y+EGC
Sbjct: 35 MFETMYDAPGIGLAATQVNVHKRVVVMDLSEDKSEP--LVFINPEFESLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VKI+A D +G F + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQKVKINALDRDGKPFEMIAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|395764939|ref|ZP_10445559.1| peptide deformylase [Bartonella sp. DB5-6]
gi|395413756|gb|EJF80218.1| peptide deformylase [Bartonella sp. DB5-6]
Length = 176
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 74/117 (63%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D+MY+ G+GL+A Q+G+ ++++V + G+ + +V++NP++ S++ Y+EGC
Sbjct: 35 MLDIMYEAQGVGLAAIQIGVPLRMLVIDVSGDDIQKNPLVIINPKILWLSDERNIYKEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP+ + + +D G + + DL A QHE DHL G LF + ++
Sbjct: 95 LSIPEYYAEVERPKRLCVRYQDRQGKQTEIEADDLLATCLQHEIDHLNGCLFIDHIS 151
>gi|257791461|ref|YP_003182067.1| peptide deformylase [Eggerthella lenta DSM 2243]
gi|257475358|gb|ACV55678.1| peptide deformylase [Eggerthella lenta DSM 2243]
Length = 183
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 64/115 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MYK DG GL+APQ+G+ +L+V + E GE IVLVNP + + EGC
Sbjct: 36 MAKAMYKNDGCGLAAPQLGVAKRLVVIDCDQEEGEQNPIVLVNPVLVDTQGDPVVAGEGC 95
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
LS PGI + RP ++ D++G + + DL R QHE DHL GI FER
Sbjct: 96 LSCPGITVPIARPPFARVRYFDLDGEEWEIEGDDLLGRCLQHELDHLDGITMFER 150
>gi|254436643|ref|ZP_05050137.1| peptide deformylase [Octadecabacter antarcticus 307]
gi|198252089|gb|EDY76403.1| peptide deformylase [Octadecabacter antarcticus 307]
Length = 178
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 76/129 (58%), Gaps = 6/129 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+GI +++V + + + E + +VL+NPRV S+ Y+EG
Sbjct: 38 MLETMYNAPGIGLAAPQLGIMQRMLVMDCIKDDMETPQPMVLINPRVIFASSDTNIYDEG 97
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +A+VERP VK++ +++G SDL A QHE DHL G LF D
Sbjct: 98 CLSIPDQYAEVERPAVVKVEWMNLDGKTQQEEFSDLWATCVQHEIDHLNGKLFI-----D 152
Query: 120 VLDSIREQL 128
L +R Q+
Sbjct: 153 YLKPLRRQM 161
>gi|449109286|ref|ZP_21745922.1| peptide deformylase [Treponema denticola ATCC 33520]
gi|449119971|ref|ZP_21756358.1| peptide deformylase [Treponema denticola H1-T]
gi|449122368|ref|ZP_21758708.1| peptide deformylase [Treponema denticola MYR-T]
gi|448948124|gb|EMB28962.1| peptide deformylase [Treponema denticola MYR-T]
gi|448948591|gb|EMB29425.1| peptide deformylase [Treponema denticola H1-T]
gi|448959094|gb|EMB39816.1| peptide deformylase [Treponema denticola ATCC 33520]
Length = 169
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 76/119 (63%), Gaps = 5/119 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF + K +GIGL+APQVG N++L + + ++ V +NP + + S +M EEGC
Sbjct: 32 MFVTVKKENGIGLAAPQVGENIRLFIVFI-----DEQKYVFINPEIIETSQEMCLMEEGC 86
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
LS P ++ +V RP +VK+ +I+G ++ S L ARV QHE DHL GILF +R++++
Sbjct: 87 LSIPKVYDEVMRPSAVKVQFLNIDGKIKTIEASGLLARVIQHENDHLNGILFIDRLSEE 145
>gi|384534517|ref|YP_005718602.1| probabable peptide deformylase [Sinorhizobium meliloti SM11]
gi|418400256|ref|ZP_12973798.1| peptide deformylase [Sinorhizobium meliloti CCNWSX0020]
gi|23396548|sp|Q92SH6.2|DEF_RHIME RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|336031409|gb|AEH77341.1| probabable peptide deformylase [Sinorhizobium meliloti SM11]
gi|359505725|gb|EHK78245.1| peptide deformylase [Sinorhizobium meliloti CCNWSX0020]
Length = 174
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 70/117 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +L+V + E E + +V +NP+V + S + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPKRLLVLDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP ++ ++ D G +V L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAAITVEYVDREGKEQAVEAEGLLATCLQHEIDHLNGVLFIDYIS 151
>gi|398336920|ref|ZP_10521625.1| peptide deformylase [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 178
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 75/134 (55%), Gaps = 5/134 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGE----EIVLVNPRVNKYSNKMIP 55
MFD M DG+GL+APQ+GI Q++V ER G E V++NP + +N
Sbjct: 38 MFDTMRHADGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERVILNPIITPLTNDTSG 97
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+ EGCLS PG+ VERP +++ D G RF ++ A V+QHE DHL G+L+ +R
Sbjct: 98 FWEGCLSVPGMRGYVERPNKIRMQWMDEKGNRFDETIDGYKAVVYQHECDHLLGVLYVDR 157
Query: 116 MTDDVLDSIREQLE 129
+ D L E L+
Sbjct: 158 LKDTKLFGFNETLD 171
>gi|150395282|ref|YP_001325749.1| peptide deformylase [Sinorhizobium medicae WSM419]
gi|150026797|gb|ABR58914.1| peptide deformylase [Sinorhizobium medicae WSM419]
Length = 174
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 70/117 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +L+V + E E + +V +NP+V + S + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPKRLLVLDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP ++ ++ D G +V L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAAITVEYVDREGKEQAVEADGLLATCLQHEIDHLNGVLFIDYIS 151
>gi|261217620|ref|ZP_05931901.1| peptide deformylase [Brucella ceti M13/05/1]
gi|261320497|ref|ZP_05959694.1| peptide deformylase [Brucella ceti M644/93/1]
gi|260922709|gb|EEX89277.1| peptide deformylase [Brucella ceti M13/05/1]
gi|261293187|gb|EEX96683.1| peptide deformylase [Brucella ceti M644/93/1]
Length = 175
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 70/117 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY GIGL+A QVG ++++V + E + VNP + + S+K YEEGC
Sbjct: 35 MFDTMYDALGIGLAAIQVGEPIRMLVIDLAKEGEPKAPHIFVNPTIVQSSDKRSTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP +VK++ D +G S+ L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPATVKVNYFDADGKPQSMEADGLMATCLQHEIDHLNGVLFIDHIS 151
>gi|398944790|ref|ZP_10671459.1| peptide deformylase [Pseudomonas sp. GM41(2012)]
gi|398157773|gb|EJM46146.1| peptide deformylase [Pseudomonas sp. GM41(2012)]
Length = 168
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSEPR--VFINPEFETLTDEMEQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VK+ A D +G + + L A QHE DHL G LF + +++
Sbjct: 93 LSVPGFYENVDRPQKVKVKALDRDGQPYELIAEGLLAVCIQHECDHLNGKLFVDYLSNLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|15964172|ref|NP_384525.1| peptide deformylase [Sinorhizobium meliloti 1021]
gi|334314822|ref|YP_004547441.1| peptide deformylase [Sinorhizobium meliloti AK83]
gi|384528159|ref|YP_005712247.1| Peptide deformylase [Sinorhizobium meliloti BL225C]
gi|407719261|ref|YP_006838923.1| peptide deformylase [Sinorhizobium meliloti Rm41]
gi|433612205|ref|YP_007189003.1| peptide deformylase [Sinorhizobium meliloti GR4]
gi|15073348|emb|CAC41856.1| Probable peptide deformylase [Sinorhizobium meliloti 1021]
gi|333810335|gb|AEG03004.1| Peptide deformylase [Sinorhizobium meliloti BL225C]
gi|334093816|gb|AEG51827.1| Peptide deformylase [Sinorhizobium meliloti AK83]
gi|407317493|emb|CCM66097.1| Peptide deformylase [Sinorhizobium meliloti Rm41]
gi|429550395|gb|AGA05404.1| peptide deformylase [Sinorhizobium meliloti GR4]
Length = 178
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 70/117 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +L+V + E E + +V +NP+V + S + YEEGC
Sbjct: 39 MLETMYDAPGIGLAAIQIGVPKRLLVLDVTKEGEEKQPLVFINPKVVRSSEERSVYEEGC 98
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP ++ ++ D G +V L A QHE DHL G+LF + ++
Sbjct: 99 LSIPDYYAEVERPAAITVEYVDREGKEQAVEAEGLLATCLQHEIDHLNGVLFIDYIS 155
>gi|56459130|ref|YP_154411.1| N-formylmethionyl-tRNA deformylase [Idiomarina loihiensis L2TR]
gi|81678352|sp|Q5QXI5.1|DEF_IDILO RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|56178140|gb|AAV80862.1| N-formylmethionyl-tRNA deformylase [Idiomarina loihiensis L2TR]
Length = 174
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ G+GL+A QV ++ +L V + + E +V +NP + + + +EGC
Sbjct: 35 MFETMYEEQGVGLAATQVDVHRRLFVSD--CSEDQNEPLVFINPEITE-AEGHFKNDEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPG++A VER E + + A D NG RFS S L A QHE DHL G LF + ++
Sbjct: 92 LSFPGVYAKVERAERITVTALDKNGERFSRSAEGLLAICIQHEIDHLDGKLFVDYLSPLK 151
Query: 121 LDSIREQLE 129
+ IR++LE
Sbjct: 152 RERIRKKLE 160
>gi|319649622|ref|ZP_08003778.1| peptide deformylase [Bacillus sp. 2_A_57_CT2]
gi|317398784|gb|EFV79466.1| peptide deformylase [Bacillus sp. 2_A_57_CT2]
Length = 161
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 73/117 (62%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+G++ Q+ + + E G I ++NP + + +N EGC
Sbjct: 35 MYDTMIEFDGVGLAAPQIGLSRQIAIVDIDDEFGT---IEIINPEILE-TNGEQTGPEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LSFPG++ +V RPE VKI A+D G F++ D AR HE DHL G+LF ++T
Sbjct: 91 LSFPGLYGEVTRPEYVKIKAQDRKGKYFTLEAEDFLARAILHEIDHLHGVLFTSKVT 147
>gi|206603587|gb|EDZ40067.1| Polypeptide deformylase [Leptospirillum sp. Group II '5-way CG']
Length = 177
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 76/132 (57%), Gaps = 5/132 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVF--NPVGERGEGEEIVLVNPRVNKYSNKMIPYEE 58
MF+++Y+ GIG++APQVG N++ VF N + G + ++NP ++ I EE
Sbjct: 35 MFELLYRVPGIGIAAPQVGCNMRFFVFDMNRRADPGSRTPVTIINPVISAKEGS-ITQEE 93
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
GCLSFPGI VER ++I D+ G + L AR+ QHE DHL+G+L E MT
Sbjct: 94 GCLSFPGIFVPVERALRIEIKGVDMEGKDLVLEGEGLFARLIQHEMDHLEGVLLSEHMTR 153
Query: 119 DVLDSIREQLEI 130
D +R Q EI
Sbjct: 154 --WDKLRLQKEI 163
>gi|407005843|gb|EKE21866.1| hypothetical protein ACD_7C00100G0003 [uncultured bacterium]
Length = 142
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 68/115 (59%), Gaps = 5/115 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M M + +G+GL+APQ+G +++L V +GE VL+NP++ +SN + EEGC
Sbjct: 33 MLATMRENNGMGLAAPQIGKSIRLCVI-----EHQGETYVLINPKITSHSNIKLKNEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
LSFPG VER E+V+ D G + + +L AR QHE DHL GI+F R
Sbjct: 88 LSFPGKFIPVERFETVQARYLDEKGKKCKIKAQNLLARALQHEIDHLDGIVFINR 142
>gi|385264698|ref|ZP_10042785.1| peptide deformylase [Bacillus sp. 5B6]
gi|385149194|gb|EIF13131.1| peptide deformylase [Bacillus sp. 5B6]
Length = 165
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 71/117 (60%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI + V + +GE E I LVNP + + S + E GC
Sbjct: 40 MYDTMLEMDGVGLAAPQIGILKRAAVVD-IGE--ESGRIDLVNPVILEKSGEQTGVE-GC 95
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LSFPG++ DV RP+ VK+ A D G F + AR QHE DHL GILF ++T
Sbjct: 96 LSFPGVYGDVTRPDYVKVKAHDRKGKPFILEAEGFLARAVQHEMDHLDGILFTSKIT 152
>gi|330806738|ref|YP_004351200.1| peptide deformylase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|378948015|ref|YP_005205503.1| hypothetical protein PSF113_0073 [Pseudomonas fluorescens F113]
gi|423694583|ref|ZP_17669073.1| peptide deformylase [Pseudomonas fluorescens Q8r1-96]
gi|327374846|gb|AEA66196.1| Peptide deformylase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|359758029|gb|AEV60108.1| Def [Pseudomonas fluorescens F113]
gi|388004381|gb|EIK65694.1| peptide deformylase [Pseudomonas fluorescens Q8r1-96]
Length = 168
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSEPR--VFINPEFETLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQKVKIKALDRDGQPYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|336236102|ref|YP_004588718.1| peptide deformylase [Geobacillus thermoglucosidasius C56-YS93]
gi|335362957|gb|AEH48637.1| Peptide deformylase [Geobacillus thermoglucosidasius C56-YS93]
Length = 157
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 71/116 (61%), Gaps = 4/116 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M DG+GL+APQVGI Q+ V + E G I L+NPR+ + + I EGC
Sbjct: 35 MYDTMIDADGVGLAAPQVGIAKQIAVVDVGDEHGR---IELINPRIMEARGEQIG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LSFPG+ A+V+R VK+ A+D G F++ + AR QHE DHL G+LF ++
Sbjct: 91 LSFPGLFAEVKRANYVKVRAQDRRGRPFTLKATGFLARALQHEIDHLNGMLFTSKV 146
>gi|418294659|ref|ZP_12906547.1| peptide deformylase, partial [Pseudomonas stutzeri ATCC 14405 =
CCUG 16156]
gi|379066030|gb|EHY78773.1| peptide deformylase, partial [Pseudomonas stutzeri ATCC 14405 =
CCUG 16156]
Length = 145
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + +++M Y+EGC
Sbjct: 12 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEPR--VFINPELESLTDEMDQYQEGC 69
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V+I A D +G + + L A QHE DHL G LF + ++
Sbjct: 70 LSVPGFYENVDRPQKVRIKALDRDGKPYEMVAEGLLAVCIQHECDHLNGKLFVDYLSSLK 129
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 130 RDRIKKKLE 138
>gi|407367489|ref|ZP_11114021.1| peptide deformylase [Pseudomonas mandelii JR-1]
Length = 168
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSEPR--VFINPEFEPLTDEMEQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VK+ A D +G + + L A QHE DHL G LF + +++
Sbjct: 93 LSVPGFYENVDRPQKVKVKALDRDGKPYELIAEGLLAVCIQHECDHLNGKLFVDYLSNLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|398961098|ref|ZP_10678496.1| peptide deformylase [Pseudomonas sp. GM30]
gi|398153049|gb|EJM41556.1| peptide deformylase [Pseudomonas sp. GM30]
Length = 215
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 82 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRTEPR--VFINPEFESLTDEMDQYQEGC 139
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL G LF + ++
Sbjct: 140 LSVPGFYENVDRPQKVKIKALDRDGQPYELVAEGLLAVCIQHECDHLNGKLFVDYLSTLK 199
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 200 RDRIKKKLE 208
>gi|407794102|ref|ZP_11141131.1| N-formylmethionyl-tRNA deformylase [Idiomarina xiamenensis 10-D-4]
gi|407213526|gb|EKE83382.1| N-formylmethionyl-tRNA deformylase [Idiomarina xiamenensis 10-D-4]
Length = 172
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY++ G+GL+A QV ++ +L V + + E +V +NP + + S EEGC
Sbjct: 35 MFETMYESQGVGLAATQVDVHKRLFVAD--CSEDQNEPLVFINPEITE-SEGDFTNEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPG++A VER V + A D +G RFS + L A QHE DHL G LF + ++
Sbjct: 92 LSFPGVYAKVERASKVTVSALDKHGERFSKTAEGLLAICIQHEIDHLNGKLFVDYLSPLK 151
Query: 121 LDSIREQLE 129
+ IR++LE
Sbjct: 152 RERIRKKLE 160
>gi|309789939|ref|ZP_07684515.1| peptide deformylase [Oscillochloris trichoides DG-6]
gi|308227959|gb|EFO81611.1| peptide deformylase [Oscillochloris trichoides DG6]
Length = 185
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 80/138 (57%), Gaps = 14/138 (10%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN---PVGERGEG--------EEIVLVNPRVNKY 49
MF+ M K+ G+GL+APQVG+ +QL + + +R +G EE VL+NPR+ K
Sbjct: 39 MFETMRKSHGVGLAAPQVGLPIQLCIIEIPAEIEQRDDGTEVEVAPAEEYVLINPRIVKT 98
Query: 50 SNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSD-LPARVFQHEFDHLQ 108
S I +EGCLS PG + V R V ++ +D NG + + +D L QHE DHL
Sbjct: 99 SGDEIMRDEGCLSLPGWYGMVPRHSWVTVEYQDFNGKQHRLRKADGLLGWAIQHEVDHLH 158
Query: 109 GILFFERMTDDVLDSIRE 126
G+LF ER+ D L ++R+
Sbjct: 159 GVLFTERIRD--LSTLRD 174
>gi|258541770|ref|YP_003187203.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-01]
gi|384041691|ref|YP_005480435.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-12]
gi|384050206|ref|YP_005477269.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-03]
gi|384053316|ref|YP_005486410.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-07]
gi|384056548|ref|YP_005489215.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-22]
gi|384059189|ref|YP_005498317.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-26]
gi|384062483|ref|YP_005483125.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-32]
gi|384118559|ref|YP_005501183.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256632848|dbj|BAH98823.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-01]
gi|256635905|dbj|BAI01874.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-03]
gi|256638960|dbj|BAI04922.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-07]
gi|256642014|dbj|BAI07969.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-22]
gi|256645069|dbj|BAI11017.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-26]
gi|256648124|dbj|BAI14065.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-32]
gi|256651177|dbj|BAI17111.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256654168|dbj|BAI20095.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus IFO 3283-12]
Length = 186
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY+ GIGL+APQVG++ + ++ + +GE+ + IV++NP V + M EEGC
Sbjct: 53 MFSAMYQAPGIGLAAPQVGLSQRFILVD-LGEKDARDPIVMINPEVIAETEDMAVREEGC 111
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+V RPE +++ ++NG L A QHE DHL+G+LF + ++
Sbjct: 112 LSLPNQYAEVVRPEKIRVRWNNVNGDVVEREAEGLLATCIQHEIDHLEGVLFVDHLS 168
>gi|399003947|ref|ZP_10706592.1| peptide deformylase [Pseudomonas sp. GM18]
gi|398121237|gb|EJM10874.1| peptide deformylase [Pseudomonas sp. GM18]
Length = 168
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSEPR--VFINPEFETLTDEMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQKVKIKALDRDGQPYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|77456245|ref|YP_345750.1| peptide deformylase [Pseudomonas fluorescens Pf0-1]
gi|398976375|ref|ZP_10686281.1| peptide deformylase [Pseudomonas sp. GM25]
gi|77380248|gb|ABA71761.1| peptide deformylase [Pseudomonas fluorescens Pf0-1]
gi|398139211|gb|EJM28212.1| peptide deformylase [Pseudomonas sp. GM25]
Length = 168
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRTEPR--VFINPEFESLTDEMEQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQKVKIKALDRDGKPYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|89098706|ref|ZP_01171588.1| peptide deformylase [Bacillus sp. NRRL B-14911]
gi|89086668|gb|EAR65787.1| peptide deformylase [Bacillus sp. NRRL B-14911]
Length = 181
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 71/116 (61%), Gaps = 4/116 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI ++ V + E G I L+NP + + + EGC
Sbjct: 55 MYDTMIEFDGVGLAAPQIGIRKRIAVVDIDDENGT---IELINPEIIETGGEQTG-PEGC 110
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LSFPG++ +V RP +VKI A+D G F++ D AR QHE DHL G+LF ++
Sbjct: 111 LSFPGLYGEVTRPFTVKIKAQDRKGKSFTLEADDFLARAIQHEIDHLDGVLFTSKV 166
>gi|424920645|ref|ZP_18344006.1| peptide deformylase [Pseudomonas fluorescens R124]
gi|404301805|gb|EJZ55767.1| peptide deformylase [Pseudomonas fluorescens R124]
Length = 215
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 82 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRTEPR--VFINPEFESLTDEMDQYQEGC 139
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL G LF + ++
Sbjct: 140 LSVPGFYENVDRPQKVKIKALDRDGQPYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLK 199
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 200 RDRIKKKLE 208
>gi|449128726|ref|ZP_21764972.1| peptide deformylase [Treponema denticola SP33]
gi|448941134|gb|EMB22038.1| peptide deformylase [Treponema denticola SP33]
Length = 169
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 79/120 (65%), Gaps = 7/120 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQL-MVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
MF + K +GIGL+APQVG N++L +VF + E ++ V +NP + + S +M EEG
Sbjct: 32 MFVTVKKENGIGLAAPQVGENIRLFIVF--INE----QKYVFINPEIIETSQEMCLMEEG 85
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P ++ +V RP +VK+ +I+G ++ S L ARV QHE DHL G+LF +R++++
Sbjct: 86 CLSIPKVYDEVMRPSAVKVQFLNIDGKIKTIEASGLLARVIQHENDHLNGVLFIDRLSEE 145
>gi|452855519|ref|YP_007497202.1| peptide deformylase [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
gi|452079779|emb|CCP21536.1| peptide deformylase [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
Length = 165
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 71/117 (60%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI + V + +GE E I LVNP + + S + E GC
Sbjct: 40 MYDTMLEMDGVGLAAPQIGILKRAAVVD-IGE--ESGRIDLVNPVILEKSGEQTGVE-GC 95
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LSFPG++ DV RP+ VK+ A D G F + AR QHE DHL GILF ++T
Sbjct: 96 LSFPGVYGDVTRPDYVKVKAYDRKGKPFVLEAEGFLARAVQHEIDHLDGILFTSKIT 152
>gi|313673898|ref|YP_004052009.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672]
gi|312940654|gb|ADR19846.1| peptide deformylase [Calditerrivibrio nitroreducens DSM 19672]
Length = 167
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 78/129 (60%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+APQVGI+ +L + + E+ + + V +NP + K + I EEGC
Sbjct: 34 MAETMYNAPGVGLAAPQVGIDKRLFIIDISKEKNDLK--VFINPTILKKEGE-ICDEEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG +A+V R E V+ A+DING F + L AR QHE DHL G LF +R+
Sbjct: 91 LSVPGEYANVTRAEVVEAVAQDINGNEFIIKADGLMARAIQHELDHLNGTLFLDRLPAFK 150
Query: 121 LDSIREQLE 129
+S+++ ++
Sbjct: 151 RESVKKHIK 159
>gi|421848416|ref|ZP_16281404.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus NBRC 101655]
gi|421852397|ref|ZP_16285086.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471]
gi|371460777|dbj|GAB26607.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus NBRC 101655]
gi|371479477|dbj|GAB30289.1| N-formylmethionylaminoacyl-tRNA deformylase [Acetobacter
pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471]
Length = 217
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY+ GIGL+APQVG++ + ++ + +GE+ + IV++NP V + M EEGC
Sbjct: 84 MFSAMYQAPGIGLAAPQVGLSQRFILVD-LGEKDARDPIVMINPEVIAETEDMAVREEGC 142
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+V RPE +++ ++NG L A QHE DHL+G+LF + ++
Sbjct: 143 LSLPNQYAEVVRPEKIRVRWNNVNGDVVEREAEGLLATCIQHEIDHLEGVLFVDHLS 199
>gi|114770091|ref|ZP_01447629.1| peptide deformylase [Rhodobacterales bacterium HTCC2255]
gi|114548928|gb|EAU51811.1| peptide deformylase [alpha proteobacterium HTCC2255]
Length = 172
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 68/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+APQV + ++ V + + + +VL+NP + S ++ Y EGC
Sbjct: 35 MIETMYDAPGVGLAAPQVASDARIFVMDCTDSESDNQPLVLINPEIISVSEELNTYSEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P + DVERP+ V++ DI+G + + L A QHE DHL G+LF + ++
Sbjct: 95 LSLPDLFEDVERPKQVRMSFLDIDGKQHNELFDGLWATCAQHELDHLNGVLFIDHLS 151
>gi|373459834|ref|ZP_09551601.1| Peptide deformylase [Caldithrix abyssi DSM 13497]
gi|371721498|gb|EHO43269.1| Peptide deformylase [Caldithrix abyssi DSM 13497]
Length = 166
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 76/118 (64%), Gaps = 3/118 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGE-EIVLVNPRVNKYSNKMIPYEEG 59
+ DVM+ DGIGL+APQ+GI+ Q++ + E E E V VNP++ + S + + EEG
Sbjct: 34 LIDVMHVEDGIGLAAPQIGISRQIIAVD-ASELVENEFPRVFVNPQILEASGEWV-VEEG 91
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLS PG+ +V RPE++ + +D+ G F+ S +R+ QHE DHL GILF +R++
Sbjct: 92 CLSIPGVREEVTRPETILLKFQDVVGESFTQEFSGWLSRILQHEIDHLNGILFVDRIS 149
>gi|350572382|ref|ZP_08940682.1| peptide deformylase [Neisseria wadsworthii 9715]
gi|349790166|gb|EGZ44085.1| peptide deformylase [Neisseria wadsworthii 9715]
Length = 167
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + ER E V +NP++ + + YEEGC
Sbjct: 35 MFETMYEAKGIGLAATQVNVHERVVVMDLSEERNEPR--VFINPQIT-HKDGETTYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+ V R E V ++A D NG +F++ L A QHE DHL G +F E ++
Sbjct: 92 LSVPGIYDTVTRAERVTVEALDENGQKFTLEADGLLAICIQHELDHLMGKVFIEHLSQLK 151
Query: 121 LDSIREQLE 129
+ I+ +L+
Sbjct: 152 QNRIKTKLK 160
>gi|255535832|ref|YP_003096203.1| peptide deformylase [Flavobacteriaceae bacterium 3519-10]
gi|255342028|gb|ACU08141.1| Peptide deformylase [Flavobacteriaceae bacterium 3519-10]
Length = 190
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 79/128 (61%), Gaps = 11/128 (8%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV--FNPVGERGEGEEI---------VLVNPRVNKY 49
MFD M GIGL+APQVG++++L + +P+ E + +I VL+N ++ +
Sbjct: 34 MFDTMNSAHGIGLAAPQVGLDIRLFIVDLSPLAEDEDYADIADELKDFKKVLINAKILEE 93
Query: 50 SNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQG 109
+ + + EGCLS P I DV+R E++ I+ D N + + + SD+ ARV QHE+DH++G
Sbjct: 94 TGEEWKFNEGCLSIPDIREDVKRKETIVIEYYDENFVKHTDTFSDMRARVIQHEYDHIEG 153
Query: 110 ILFFERMT 117
ILF + ++
Sbjct: 154 ILFTDHLS 161
>gi|375256533|ref|YP_005015700.1| peptide deformylase [Tannerella forsythia ATCC 43037]
gi|363408265|gb|AEW21951.1| peptide deformylase [Tannerella forsythia ATCC 43037]
Length = 185
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 81/133 (60%), Gaps = 10/133 (7%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGE-RGEGEEI--VLVNPRVNKYSNKMIP 55
MF+ MY DG+GL+APQ+G ++ L+V + PV R E ++ VL+NP + + S + +
Sbjct: 34 MFETMYHADGVGLAAPQIGRSISLVVIDGTPVANNRIECKDFKRVLINPEIIEESRETVT 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+EEGCLSFPG+H V RPE +K+ + + +L AR+ HE++HLQG +F
Sbjct: 94 FEEGCLSFPGVHEKVTRPEKIKVRYMNEHFEPQEENLEGFAARIVLHEYEHLQGHVFI-- 151
Query: 116 MTDDVLDSIREQL 128
D + +IR QL
Sbjct: 152 ---DNISAIRRQL 161
>gi|146305096|ref|YP_001185561.1| peptide deformylase [Pseudomonas mendocina ymp]
gi|421502977|ref|ZP_15949929.1| peptide deformylase [Pseudomonas mendocina DLHK]
gi|166198520|sp|A4XNB3.1|DEF_PSEMY RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|145573297|gb|ABP82829.1| peptide deformylase [Pseudomonas mendocina ymp]
gi|400346434|gb|EJO94792.1| peptide deformylase [Pseudomonas mendocina DLHK]
Length = 168
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ +++V + ++ E V +NP +++M Y+EGC
Sbjct: 35 MFETMYDAPGIGLAATQVNVHKRVVVMDLSEDKSEPR--VFINPEFESLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VKI A D +G F + L A QHE DHL G LF + +++
Sbjct: 93 LSVPGFYENVDRPQKVKIKALDRDGQPFELIAEGLLAVCIQHECDHLNGKLFVDYLSNLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|399024969|ref|ZP_10726987.1| peptide deformylase [Chryseobacterium sp. CF314]
gi|398079070|gb|EJL69942.1| peptide deformylase [Chryseobacterium sp. CF314]
Length = 190
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 80/128 (62%), Gaps = 11/128 (8%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGEGEEI---------VLVNPRVNKY 49
MF+ MY +GIGL+APQ+G++++L V + P+ E + E+I V +N ++ +
Sbjct: 34 MFETMYSANGIGLAAPQIGLDIRLFVIDVTPLAEDEDYEDIKDELKDFKKVFINAKILEE 93
Query: 50 SNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQG 109
S + + EGCLS P + DV+R ++ I+ D N + + + SD+ ARV QHE+DH++G
Sbjct: 94 SGEEWKFNEGCLSIPDVREDVKRKGTIVIEYHDENFVKHTETFSDIRARVIQHEYDHIEG 153
Query: 110 ILFFERMT 117
+LF + ++
Sbjct: 154 VLFTDHLS 161
>gi|398997464|ref|ZP_10700289.1| peptide deformylase [Pseudomonas sp. GM21]
gi|398124106|gb|EJM13629.1| peptide deformylase [Pseudomonas sp. GM21]
Length = 168
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSEPR--VFINPEFETLTDEMEQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VK+ A D +G + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQKVKVKALDRDGQPYELIAEGLLAVCIQHECDHLNGKLFVDYLSSLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|388544127|ref|ZP_10147416.1| peptide deformylase [Pseudomonas sp. M47T1]
gi|388277955|gb|EIK97528.1| peptide deformylase [Pseudomonas sp. M47T1]
Length = 168
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R +V +NP + +M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSAP--MVFINPEFESLTEEMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VKI A+D +G + + L A QHE DHL G LF + +++
Sbjct: 93 LSVPGFYENVDRPQRVKIKAQDRDGKPYELIAEGLLAVCIQHECDHLNGKLFVDYLSNLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|126738020|ref|ZP_01753741.1| peptide deformylase [Roseobacter sp. SK209-2-6]
gi|126720517|gb|EBA17222.1| peptide deformylase [Roseobacter sp. SK209-2-6]
Length = 168
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 65/116 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY G GL+APQVG+ +L V + + G G +V++NP + Y EGC
Sbjct: 33 MFETMYAAPGRGLAAPQVGVMHRLFVMDATWKEGPGSPVVMINPEIMAYDGGTDILAEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LS PGI DVER +SV + +D G S AR QHEFDHL+G + F+ +
Sbjct: 93 LSIPGITIDVERSKSVNMRWQDQAGDWQERWFSGFEARCIQHEFDHLEGRVTFDHL 148
>gi|407792151|ref|ZP_11139222.1| peptide deformylase [Gallaecimonas xiamenensis 3-C-1]
gi|407198008|gb|EKE68053.1| peptide deformylase [Gallaecimonas xiamenensis 3-C-1]
Length = 173
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 78/129 (60%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY +GIGL+A QV +++Q++V + ER E V +NP + + K + +EGC
Sbjct: 35 MFDTMYDENGIGLAATQVDVHLQVVVMDISEERNERR--VFINPEIIEKDGKAMG-DEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG +A+VER E +K+ A D G F + L A QHE DHL+G LF + ++
Sbjct: 92 LSVPGSYAEVERAEHIKVKALDEQGQEFILEAEGLLAVCVQHELDHLKGKLFIDYLSPLK 151
Query: 121 LDSIREQLE 129
+ IR++LE
Sbjct: 152 RERIRKKLE 160
>gi|387898151|ref|YP_006328447.1| formylmethionine deformylase [Bacillus amyloliquefaciens Y2]
gi|387172261|gb|AFJ61722.1| formylmethionine deformylase [Bacillus amyloliquefaciens Y2]
Length = 165
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 71/117 (60%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI + V + +GE E I LVNP + + S + E GC
Sbjct: 40 MYDTMLEMDGVGLAAPQIGILKRAAVVD-IGE--ESGRIDLVNPVILEKSGEQTGVE-GC 95
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LSFPG++ DV RP+ VK+ A D G F + AR QHE DHL GILF ++T
Sbjct: 96 LSFPGVYGDVTRPDYVKVKAYDRKGKPFILEAEGFLARAVQHEMDHLDGILFTSKIT 152
>gi|384921358|ref|ZP_10021341.1| peptide deformylase [Citreicella sp. 357]
gi|384464774|gb|EIE49336.1| peptide deformylase [Citreicella sp. 357]
Length = 173
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 76/131 (58%), Gaps = 9/131 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE---IVLVNPRVNKYSNKMIPYE 57
M + MY GIGL+APQVG+ +++ + + GEE +V+VNPRV S++ YE
Sbjct: 34 MLETMYDAPGIGLAAPQVGVMSRMIALD-CAKPDNGEEARPLVMVNPRVIASSDERNVYE 92
Query: 58 EGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
EGCLS P +ADVERP+ V+++ D++GA L A QHE DHL G LF
Sbjct: 93 EGCLSIPDQYADVERPKLVEVEWMDLDGAARREEFDGLWATCVQHEIDHLDGKLFI---- 148
Query: 118 DDVLDSIREQL 128
D L ++ Q+
Sbjct: 149 -DYLKPLKRQM 158
>gi|51892481|ref|YP_075172.1| polypeptide deformylase [Symbiobacterium thermophilum IAM 14863]
gi|81692121|sp|Q67PR5.1|DEF_SYMTH RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|51856170|dbj|BAD40328.1| polypeptide deformylase [Symbiobacterium thermophilum IAM 14863]
Length = 217
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 72/118 (61%), Gaps = 3/118 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+APQVG++ +L+V +P + G G+ L+NP + K + + EGC
Sbjct: 35 MTETMYAAPGVGLAAPQVGVSKRLIVVDP--QDGSGQLYQLINPEIVK-AEGWVKGTEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS PG+ DV R E V++ A D G + + AR+FQHE DHL GIL+ ++ T+
Sbjct: 92 LSIPGMVGDVWRYEKVQVVALDRTGKKVWIDAEGYLARIFQHEIDHLDGILYTDKCTN 149
>gi|384265154|ref|YP_005420861.1| peptide deformylase [Bacillus amyloliquefaciens subsp. plantarum
YAU B9601-Y2]
gi|380498507|emb|CCG49545.1| peptide deformylase [Bacillus amyloliquefaciens subsp. plantarum
YAU B9601-Y2]
Length = 160
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 71/117 (60%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI + V + +GE E I LVNP + + S + E GC
Sbjct: 35 MYDTMLEMDGVGLAAPQIGILKRAAVVD-IGE--ESGRIDLVNPVILEKSGEQTGVE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LSFPG++ DV RP+ VK+ A D G F + AR QHE DHL GILF ++T
Sbjct: 91 LSFPGVYGDVTRPDYVKVKAYDRKGKPFILEAEGFLARAVQHEMDHLDGILFTSKIT 147
>gi|374704487|ref|ZP_09711357.1| peptide deformylase [Pseudomonas sp. S9]
Length = 168
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +L+V + +R E V +NP + +M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRLVVMDLSEDRSEPR--VFINPEFESLTEEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +++RP+ VK+ A D +G + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENIDRPQKVKVKALDRDGKPYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|154685988|ref|YP_001421149.1| peptide deformylase [Bacillus amyloliquefaciens FZB42]
gi|429505123|ref|YP_007186307.1| peptide deformylase [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|154351839|gb|ABS73918.1| DefA [Bacillus amyloliquefaciens FZB42]
gi|429486713|gb|AFZ90637.1| peptide deformylase [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
Length = 160
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 71/117 (60%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI + V + +GE E I LVNP + + S + E GC
Sbjct: 35 MYDTMLEMDGVGLAAPQIGILKRAAVVD-IGE--ESGRIDLVNPVILEKSGEQTGVE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LSFPG++ DV RP+ VK+ A D G F + AR QHE DHL GILF ++T
Sbjct: 91 LSFPGVYGDVTRPDYVKVKAYDRKGKPFILEAEGFLARAVQHEMDHLDGILFTSKIT 147
>gi|425896692|ref|ZP_18873283.1| peptide deformylase [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|397882103|gb|EJK98591.1| peptide deformylase [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
Length = 168
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSEPR--VFINPEFEALTDEMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQRVKIKALDRDGQPYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|422316180|ref|ZP_16397580.1| peptide deformylase [Fusobacterium periodonticum D10]
gi|404591426|gb|EKA93572.1| peptide deformylase [Fusobacterium periodonticum D10]
Length = 174
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 72/117 (61%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+TDGIGL+APQVG++ ++ V E G G+ ++NP + + + +EEGC
Sbjct: 36 MVETMYETDGIGLAAPQVGVSKRVFVC----EDGSGKIRKIINPVIEPLTEETQEFEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ VERP+ V + + NG +L A V QHE DHL GILF E+++
Sbjct: 92 LSVPGIYKKVERPKKVMLKYLNENGEAVEEIAEELLAVVVQHENDHLNGILFVEKIS 148
>gi|398878984|ref|ZP_10634088.1| peptide deformylase [Pseudomonas sp. GM67]
gi|398883314|ref|ZP_10638271.1| peptide deformylase [Pseudomonas sp. GM60]
gi|398196976|gb|EJM83966.1| peptide deformylase [Pseudomonas sp. GM60]
gi|398197893|gb|EJM84865.1| peptide deformylase [Pseudomonas sp. GM67]
Length = 168
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRTEPR--VFINPEFEPLTDEMEQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VK+ A D +G + + L A QHE DHL G LF + +++
Sbjct: 93 LSVPGFYENVDRPQKVKVKALDRDGQPYELIAEGLLAVCIQHECDHLNGKLFVDYLSNLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|421858975|ref|ZP_16291224.1| N-formylmethionyl-tRNA deformylase [Paenibacillus popilliae ATCC
14706]
gi|410831494|dbj|GAC41661.1| N-formylmethionyl-tRNA deformylase [Paenibacillus popilliae ATCC
14706]
Length = 160
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 69/114 (60%), Gaps = 4/114 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY DG+GL+APQ+GI ++++ + E G I ++NP + K + + E GC
Sbjct: 35 MADTMYHADGVGLAAPQIGILKRVIIVDVGDEHGL---IEMINPIILKAEGEQLGTE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
LS PG++ DV R E + + D +G F+V SD AR FQHE DHL GILF E
Sbjct: 91 LSIPGLNGDVRRYEHITVQGLDRHGKTFTVEASDFLARAFQHEIDHLNGILFTE 144
>gi|398853371|ref|ZP_10609974.1| peptide deformylase [Pseudomonas sp. GM80]
gi|398239902|gb|EJN25600.1| peptide deformylase [Pseudomonas sp. GM80]
Length = 168
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + +M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRTEPR--VFINPEFESLTEEMEQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQKVKIKALDRDGKPYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|402851222|ref|ZP_10899392.1| Peptide deformylase [Rhodovulum sp. PH10]
gi|402498514|gb|EJW10256.1| Peptide deformylase [Rhodovulum sp. PH10]
Length = 174
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 66/117 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MYK GIGL+A QVG+ +++ + + E +NP++ S + YEEGC
Sbjct: 35 MFETMYKAPGIGLAAIQVGVAKRVVTLDVSRKDDEKNPKAFINPQIVWASEDLNVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P IH DVERPE VK+ D+ G L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDIHEDVERPEKVKVRYLDLEGRTREEDADGLFATCIQHEIDHLNGVLFIDHIS 151
>gi|161501956|ref|YP_257174.2| peptide deformylase [Pseudomonas protegens Pf-5]
gi|341579779|gb|AAY95440.2| peptide deformylase [Pseudomonas protegens Pf-5]
Length = 168
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEPR--VFINPEFEALTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQRVKIKALDRDGQPYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|34499720|ref|NP_903935.1| peptide deformylase [Chromobacterium violaceum ATCC 12472]
gi|39930829|sp|Q7NQ75.1|DEF_CHRVO RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|34105571|gb|AAQ61925.1| Polypeptide deformylase [Chromobacterium violaceum ATCC 12472]
Length = 167
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV + +L+V + ER E V +NP + + + + YEEGC
Sbjct: 35 MFETMYEAKGIGLAATQVDYHRRLVVMDISEERDERR--VFINPEIVEKDGETV-YEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+ V R E VK+ A+D +G F + L A QHE DHL G++F ER++
Sbjct: 92 LSVPGIYDKVTRAERVKVKAQDRDGKPFELEADGLLAICIQHELDHLNGVVFVERLSQMK 151
Query: 121 LDSIREQLE 129
I+ +L+
Sbjct: 152 QQRIKTKLK 160
>gi|431925232|ref|YP_007238266.1| peptide deformylase [Pseudomonas stutzeri RCH2]
gi|431823519|gb|AGA84636.1| peptide deformylase [Pseudomonas stutzeri RCH2]
Length = 168
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEPR--VFINPEFESLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V+I A D +G + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQKVRIKALDRDGKPYELVAEGLLAVCIQHECDHLNGKLFVDYLSSLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|452750253|ref|ZP_21950005.1| peptide deformylase [Pseudomonas stutzeri NF13]
gi|452005903|gb|EMD98183.1| peptide deformylase [Pseudomonas stutzeri NF13]
Length = 168
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEPR--VFINPEFESLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V+I A D +G + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQKVRIKALDRDGKPYELVAEGLLAVCIQHECDHLNGKLFVDYLSSLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|337289130|ref|YP_004628602.1| Peptide deformylase [Thermodesulfobacterium sp. OPB45]
gi|334902868|gb|AEH23674.1| Peptide deformylase [Thermodesulfobacterium geofontis OPF15]
Length = 164
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 6/128 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++MYK GIGL+A QVGI + + + G+ + V +NP + + I YEEGC
Sbjct: 32 MAEIMYKAKGIGLAANQVGILKRFFIMDVSQREGKNKLEVYINPEIVFTEGETI-YEEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG A V+R + I A DI+G L ++ A VFQHE+DHL GILF +R++
Sbjct: 91 LSIPGYFAPVKRYAKIYIKAYDIDGKPIERELDEISAIVFQHEYDHLDGILFIDRLS--- 147
Query: 121 LDSIREQL 128
IR+QL
Sbjct: 148 --PIRKQL 153
>gi|319898269|ref|YP_004158362.1| polypeptide deformylase [Bartonella clarridgeiae 73]
gi|319402233|emb|CBI75766.1| polypeptide deformylase [Bartonella clarridgeiae 73]
Length = 171
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 69/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QVG+ ++++V + + +V++NP + SN+ Y EGC
Sbjct: 35 MLETMYNAQGIGLAAVQVGVPLRMLVLDISSKDAPKNPLVVINPEILWISNERNIYREGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP+ ++I RD G + + DL A QHE DHL G LF + ++
Sbjct: 95 LSIPEYYAEVERPKYLRICYRDREGKQAEIEADDLLATCLQHEIDHLNGCLFIDHIS 151
>gi|224011581|ref|XP_002295565.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|209583596|gb|ACI64282.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 192
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 78/130 (60%), Gaps = 4/130 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M +MY++ G+GL+APQ+G+N + V+NP + E ++ NP++ KYS ++I +EGC
Sbjct: 45 MLMIMYESKGVGLAAPQIGLNENVFVYNPSDSKNM--ERIVCNPKITKYSEEVIVEQEGC 102
Query: 61 LSFPG--IHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS + V R ++ + + G + L D ARVFQHE+DHL+GIL ++R
Sbjct: 103 LSMRSDEVAGQVARSAWIECEYENEEGQKVRRRLKDFEARVFQHEYDHLKGILCYDRFPP 162
Query: 119 DVLDSIREQL 128
+ ++ +E +
Sbjct: 163 EDREAAQENI 172
>gi|408787233|ref|ZP_11198964.1| peptide deformylase [Rhizobium lupini HPC(L)]
gi|424909300|ref|ZP_18332677.1| peptide deformylase [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392845331|gb|EJA97853.1| peptide deformylase [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|408486864|gb|EKJ95187.1| peptide deformylase [Rhizobium lupini HPC(L)]
Length = 170
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 69/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +L+V + E E IV +NP + K S+ + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRLLVIDVAREGEEKTPIVFINPEILKVSDDISTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP S+ + +G + +V L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPASLTVQYVGRDGKQQTVEADGLLATCLQHEIDHLNGVLFIDHIS 151
>gi|325107786|ref|YP_004268854.1| peptide deformylase [Planctomyces brasiliensis DSM 5305]
gi|324968054|gb|ADY58832.1| peptide deformylase [Planctomyces brasiliensis DSM 5305]
Length = 198
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 73/126 (57%), Gaps = 2/126 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGE-GEEIVLVNPRVNKYSNKMIPYEEG 59
MF +MY GIGL+A QV + QL V N + E EE+V +NP + K + EEG
Sbjct: 32 MFGLMYDAKGIGLAANQVALPYQLFVINLTADPAEKSEEMVFINPTILKRRGQETG-EEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLSFP + V+R + ++A D+ GA F LS++ AR QHE DH++G LF + M +
Sbjct: 91 CLSFPEMFGPVDRSAEIVVEAFDLRGALFRYELSEMAARAVQHENDHIEGTLFIDHMKEA 150
Query: 120 VLDSIR 125
L I+
Sbjct: 151 ELAQIQ 156
>gi|424867577|ref|ZP_18291359.1| Polypeptide deformylase [Leptospirillum sp. Group II 'C75']
gi|124516653|gb|EAY58161.1| Polypeptide deformylase [Leptospirillum rubarum]
gi|387221889|gb|EIJ76396.1| Polypeptide deformylase [Leptospirillum sp. Group II 'C75']
Length = 177
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 76/132 (57%), Gaps = 5/132 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVF--NPVGERGEGEEIVLVNPRVNKYSNKMIPYEE 58
MF+++Y+ GIG++APQVG N++ VF N + G + ++NP ++ I EE
Sbjct: 35 MFELLYRVPGIGIAAPQVGCNMRFFVFDMNRRADPGSRTPVTMINPVISAKEGA-ITQEE 93
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
GCLSFPGI VER ++I D+ G + L AR+ QHE DHL+G+L E MT
Sbjct: 94 GCLSFPGIFVPVERALRIEIKGVDMEGKDLVLEGEGLFARLIQHEMDHLEGVLLSEHMTR 153
Query: 119 DVLDSIREQLEI 130
D +R Q E+
Sbjct: 154 --WDKLRLQKEM 163
>gi|421615478|ref|ZP_16056502.1| peptide deformylase [Pseudomonas stutzeri KOS6]
gi|409782551|gb|EKN62106.1| peptide deformylase [Pseudomonas stutzeri KOS6]
Length = 168
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEPR--VFINPEFESLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V+I A D +G + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQKVRIKALDRDGKPYELVAEGLLAVCIQHECDHLNGKLFVDYLSSLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|242277625|ref|YP_002989754.1| peptide deformylase [Desulfovibrio salexigens DSM 2638]
gi|242120519|gb|ACS78215.1| peptide deformylase [Desulfovibrio salexigens DSM 2638]
Length = 170
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 68/116 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ DG+GL+APQVG+ +L+V +P G + + V++NP + + S++ + EE C
Sbjct: 34 MIETMYEDDGVGLAAPQVGVQKRLIVIDPSGPKERTDLQVIINPEIVEKSSQKVDSEEAC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LS PG ++R E+V + D G + D A V QHE DHL G L +R+
Sbjct: 94 LSCPGFKCVIKRHETVTVTGTDPEGNDVRIEADDFLAIVLQHEIDHLDGTLIVDRV 149
>gi|159042735|ref|YP_001531529.1| peptide deformylase [Dinoroseobacter shibae DFL 12]
gi|157910495|gb|ABV91928.1| peptide deformylase [Dinoroseobacter shibae DFL 12]
Length = 187
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 68/128 (53%), Gaps = 5/128 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY GIGL+ PQV +++ + + GE + +VL+NP + S +M YEEGC
Sbjct: 48 MLATMYDAPGIGLAGPQVAAMTRIITMDCAPKDGEPDPMVLINPEIVWSSEEMNTYEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P ++ADVERP V++ + G S L A QHE DHL G LF D
Sbjct: 108 LSIPEMYADVERPAEVEVRWTTLEGGDASARWGGLHATCVQHEIDHLNGKLFI-----DY 162
Query: 121 LDSIREQL 128
L ++ Q+
Sbjct: 163 LKPLKRQM 170
>gi|291285975|ref|YP_003502791.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809]
gi|290883135|gb|ADD66835.1| peptide deformylase [Denitrovibrio acetiphilus DSM 12809]
Length = 175
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 75/129 (58%), Gaps = 1/129 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + M+ G+GL+APQVGI+ +L+V + EG + ++NP + + + EEGC
Sbjct: 34 MVETMHARSGVGLAAPQVGISKRLIVIDTSAGENEGMLLRVINPEIISAEGEQVG-EEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + V R E V + A D NG +++ AR FQHE DHL G+LF +R+
Sbjct: 93 LSIPGEYEPVRRAEKVTVKAMDENGKPYTMEAEGFLARAFQHEIDHLDGVLFIDRLPSYK 152
Query: 121 LDSIREQLE 129
D++++ ++
Sbjct: 153 KDTLKKTIK 161
>gi|111114886|ref|YP_709504.1| peptide deformylase [Borrelia afzelii PKo]
gi|384206566|ref|YP_005592287.1| peptide deformylase [Borrelia afzelii PKo]
gi|110890160|gb|ABH01328.1| polypeptide deformylase [Borrelia afzelii PKo]
gi|342856449|gb|AEL69297.1| peptide deformylase [Borrelia afzelii PKo]
Length = 165
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 78/125 (62%), Gaps = 7/125 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ + V V E + +V +NP + + S ++ Y+EGC
Sbjct: 32 MIELMDISGGVGLAAPQVGLDLSIFV---VRENKMAKPLVFINPVITETSYELNSYKEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFF----ERM 116
LS PG++ D+ RP+ + I+ D N F++ SD AR+ QHE DHL G+LF ER+
Sbjct: 89 LSIPGVYYDLMRPKGIVINFYDENEKSFTIENSDFLARIIQHEMDHLNGVLFIDYYEERI 148
Query: 117 TDDVL 121
+ +L
Sbjct: 149 KNKLL 153
>gi|410479886|ref|YP_006767523.1| N-formylmethionyl-tRNA deformylase [Leptospirillum ferriphilum
ML-04]
gi|406775138|gb|AFS54563.1| N-formylmethionyl-tRNA deformylase [Leptospirillum ferriphilum
ML-04]
Length = 177
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 76/132 (57%), Gaps = 5/132 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVF--NPVGERGEGEEIVLVNPRVNKYSNKMIPYEE 58
MF+++Y+ GIG++APQVG N++ VF N + G + ++NP ++ I EE
Sbjct: 35 MFELLYRVPGIGIAAPQVGCNMRFFVFDMNRRADPGSRTPVTMINPVISAKEGA-ITQEE 93
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
GCLSFPGI VER ++I D+ G + L AR+ QHE DHL+G+L E MT
Sbjct: 94 GCLSFPGIFVPVERALRIEIKGVDMEGKDLVLEGEGLFARLIQHEMDHLEGVLLSEHMTR 153
Query: 119 DVLDSIREQLEI 130
D +R Q E+
Sbjct: 154 --WDKLRLQKEM 163
>gi|410678815|ref|YP_006931217.1| peptide deformylase [Borrelia afzelii HLJ01]
gi|408536203|gb|AFU74334.1| peptide deformylase [Borrelia afzelii HLJ01]
Length = 165
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 78/125 (62%), Gaps = 7/125 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + G+GL+APQVG+++ + V V E + +V +NP + + S ++ Y+EGC
Sbjct: 32 MIELMDISGGVGLAAPQVGLDLSIFV---VRENKMAKPLVFINPVITETSYELNSYKEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFF----ERM 116
LS PG++ D+ RP+ + I+ D N F++ SD AR+ QHE DHL G+LF ER+
Sbjct: 89 LSIPGVYYDLMRPKGIVINFYDENEKSFTIENSDFLARIIQHEMDHLNGVLFIDYYEERI 148
Query: 117 TDDVL 121
+ +L
Sbjct: 149 KNKLL 153
>gi|300775194|ref|ZP_07085056.1| peptide deformylase [Chryseobacterium gleum ATCC 35910]
gi|300505934|gb|EFK37070.1| peptide deformylase [Chryseobacterium gleum ATCC 35910]
Length = 190
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 80/128 (62%), Gaps = 11/128 (8%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGEGEEI---------VLVNPRVNKY 49
MF+ MY +GIGL+APQ+G++++L V + P+ E + E+I V +N ++ +
Sbjct: 34 MFETMYSANGIGLAAPQIGLDIRLFVIDVTPLAEDEDYEDIKDELAEFKKVFINAQILEE 93
Query: 50 SNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQG 109
S + + EGCLS P + DV+R ++ I+ D N + + + SD+ ARV QHE+DH++G
Sbjct: 94 SGEEWKFNEGCLSIPDVREDVKRKGTIVIEYYDENFVKHTETFSDIRARVIQHEYDHIEG 153
Query: 110 ILFFERMT 117
ILF + ++
Sbjct: 154 ILFTDHLS 161
>gi|440690566|pdb|3UWA|A Chain A, Crystal Structure Of A Probable Peptide Deformylase From
Synechococcus Phage S-Ssm7
gi|440690567|pdb|3UWB|A Chain A, Crystal Structure Of A Probable Peptide Deformylase From
Strucynechococcus Phage S-Ssm7 In Complex With Actinonin
Length = 154
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 71/116 (61%)
Query: 3 DVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLS 62
+ + +DGIGL+APQVGIN +++V + E + VNP++ S + + ++EGCLS
Sbjct: 36 EAXWASDGIGLAAPQVGINKRVIVVDETTEEHGKYAHLXVNPKITWKSEEKVLFDEGCLS 95
Query: 63 FPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
P + +V RP+S+K+ ++ +G L L ARV QHE DHL+GILF + D
Sbjct: 96 VPDQNGEVLRPKSIKVTFQNKDGKYKKWKLDGLAARVVQHEIDHLEGILFVDYFND 151
>gi|282890597|ref|ZP_06299120.1| hypothetical protein pah_c022o198 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175273|ref|YP_004652083.1| peptide deformylase [Parachlamydia acanthamoebae UV-7]
gi|281499594|gb|EFB41890.1| hypothetical protein pah_c022o198 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336479631|emb|CCB86229.1| peptide deformylase [Parachlamydia acanthamoebae UV-7]
Length = 177
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 75/121 (61%), Gaps = 5/121 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN-PV----GERGEGEEIVLVNPRVNKYSNKMIP 55
M + M+ T+GIGL+A Q+G + + V P+ G +G++ V +NP++ YS +
Sbjct: 34 MIETMHATNGIGLAANQIGQLLSIFVTCVPIAQDDGTWIDGKDRVFINPKILAYSQEFQV 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+ EGCLS P + +DV RPES+KI A D++G F +++ A F HE DHL G+LF +R
Sbjct: 94 FSEGCLSIPKLFSDVARPESIKIQAMDLDGNVFEETMTGYEATNFMHENDHLNGVLFIDR 153
Query: 116 M 116
+
Sbjct: 154 L 154
>gi|237746966|ref|ZP_04577446.1| polypeptide deformylase [Oxalobacter formigenes HOxBLS]
gi|229378317|gb|EEO28408.1| polypeptide deformylase [Oxalobacter formigenes HOxBLS]
Length = 183
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 78/128 (60%), Gaps = 2/128 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY+ G+GL+APQV + Q++V + +R E V +NP++ K S + +EEGC
Sbjct: 35 MAQTMYEAPGVGLAAPQVNAHRQVVVIDVSEKRNELH--VFINPQIIKASEEKTLFEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+ ++ERP V + A+D++G F + L A QHE DHL+G +F + ++
Sbjct: 93 LSLPGIYDEIERPARVTVRAQDVDGKAFEMEAEGLLAVCVQHEIDHLKGRVFVDYLSPMK 152
Query: 121 LDSIREQL 128
+ I+++L
Sbjct: 153 RNRIKKKL 160
>gi|399007439|ref|ZP_10709948.1| peptide deformylase [Pseudomonas sp. GM17]
gi|398120202|gb|EJM09870.1| peptide deformylase [Pseudomonas sp. GM17]
Length = 168
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSEPR--VFINPEFEALTDEMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQRVKIRALDRDGQPYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|392419120|ref|YP_006455724.1| peptide deformylase [Pseudomonas stutzeri CCUG 29243]
gi|390981308|gb|AFM31301.1| peptide deformylase [Pseudomonas stutzeri CCUG 29243]
Length = 168
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEPR--VFINPEFESLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V+I A D +G + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQKVRIKALDRDGKPYEMVAEGLLAVCIQHECDHLNGKLFVDYLSSLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|320103814|ref|YP_004179405.1| peptide deformylase [Isosphaera pallida ATCC 43644]
gi|319751096|gb|ADV62856.1| peptide deformylase [Isosphaera pallida ATCC 43644]
Length = 200
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGE-EIVLVNPRVNKYSNKMIPYEEG 59
MF +MY+ +GIGL+A QV + Q + N G + E E V +NP++ + EEG
Sbjct: 32 MFALMYENEGIGLAANQVALPYQFFILNISGNPEQTELEQVFINPQILR-KQATAQDEEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLSFPG+H V RP +K+ A D G F + +L AR QHE+DHL G LF ++ +
Sbjct: 91 CLSFPGLHGKVLRPRRIKVRAWDQYGVPFELEADELLARAIQHEWDHLHGRLFIDKFS 148
>gi|389680439|ref|ZP_10171789.1| peptide deformylase [Pseudomonas chlororaphis O6]
gi|388555544|gb|EIM18787.1| peptide deformylase [Pseudomonas chlororaphis O6]
Length = 168
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSEPR--VFINPEFEPLTDEMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQRVKIKALDRDGQPYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|398828003|ref|ZP_10586205.1| peptide deformylase [Phyllobacterium sp. YR531]
gi|398218721|gb|EJN05223.1| peptide deformylase [Phyllobacterium sp. YR531]
Length = 176
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 68/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY GIGL+A Q+G +Q++V + E V +NP+V S++ YEEGC
Sbjct: 35 MLDTMYDAPGIGLAAIQIGTPLQMLVIDLAKEDEPKAPQVYINPKVLWSSDERNVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP+ V++ DI+G V L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPKQVRVSYLDIDGKAQEVDADGLLATCLQHEIDHLNGVLFIDYIS 151
>gi|384107655|ref|ZP_10008553.1| peptide deformylase [Treponema sp. JC4]
gi|383870511|gb|EID86113.1| peptide deformylase [Treponema sp. JC4]
Length = 191
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 70/115 (60%), Gaps = 4/115 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ M + DG+GL+ PQVG N+++ V + V +NP++ K S ++ Y+EGC
Sbjct: 34 MFETMIEADGVGLAGPQVGKNLRMFVLMA----DDDVRRVFINPQIIKTSEELGDYDEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
LS P ++ + RP V + A + NG F++ L AR+ QHE+DHL GI+F +R
Sbjct: 90 LSIPQVYETIRRPVKVTVQALNENGKPFTLDADGLLARIIQHEYDHLDGIVFIDR 144
>gi|297182175|gb|ADI18346.1| N-formylmethionyl-tRNA deformylase [uncultured actinobacterium
HF4000_04C13]
Length = 180
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 76/128 (59%), Gaps = 6/128 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY+ GIGL+APQVG+ + V++ GEG ++L NPR+ + S+ +EEGC
Sbjct: 35 MFTTMYEAPGIGLAAPQVGVQKRFFVYD----HGEGAGVIL-NPRIIE-SDGEWTFEEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + ++ RP+ V + D++G S+ ++ AR+FQHE DHL G+L + + +D
Sbjct: 89 LSVPDLTWEITRPKQVHLVGVDLDGNEVSIEADEIEARLFQHEIDHLDGVLLVDHLDEDQ 148
Query: 121 LDSIREQL 128
R L
Sbjct: 149 AREARRAL 156
>gi|308802341|ref|XP_003078484.1| peptide deformylase (ISS) [Ostreococcus tauri]
gi|116056936|emb|CAL53225.1| peptide deformylase (ISS) [Ostreococcus tauri]
Length = 175
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 56/71 (78%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF +MY+T G GL+APQVG+N ++MV+N GE G+G E+VL NP++ KYS + +EEGC
Sbjct: 100 MFKIMYETVGCGLAAPQVGVNYRMMVYNEAGEPGKGREVVLCNPKIVKYSKEKDFFEEGC 159
Query: 61 LSFPGIHADVE 71
LSFP ++ADVE
Sbjct: 160 LSFPKMYADVE 170
>gi|336324430|ref|YP_004604397.1| peptide deformylase [Flexistipes sinusarabici DSM 4947]
gi|336108011|gb|AEI15829.1| Peptide deformylase [Flexistipes sinusarabici DSM 4947]
Length = 169
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 77/129 (59%), Gaps = 1/129 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+APQVGI+ +L+V + E + L+NP V +Y + EEGC
Sbjct: 34 MAETMYNAPGVGLAAPQVGIDKRLVVMDITAEDEPPKLEKLINPEVLEYEGEQTG-EEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG +ADV+R E ++ D NG + L ARV QHE DHL GILF ++++
Sbjct: 93 LSLPGEYADVKRAEWIRYKYIDENGDEHLQEATGLRARVIQHEVDHLDGILFIDKLSTMK 152
Query: 121 LDSIREQLE 129
D I+++++
Sbjct: 153 RDMIKKRIK 161
>gi|358465683|ref|ZP_09175588.1| peptide deformylase [Fusobacterium sp. oral taxon 370 str. F0437]
gi|357069814|gb|EHI79687.1| peptide deformylase [Fusobacterium sp. oral taxon 370 str. F0437]
Length = 174
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 71/117 (60%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+TDGIGL+APQVG++ ++ V + G G ++NP + + + +EEGC
Sbjct: 36 MVETMYETDGIGLAAPQVGVSKRVFVCDD----GNGHIRKVINPIIEPLTEETQEFEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ VERP+ V + + NG DL A V QHE DHL GILF E+++
Sbjct: 92 LSVPGIYKKVERPKKVMLKYLNENGEAVEEIAEDLLAVVVQHENDHLNGILFVEKIS 148
>gi|407784413|ref|ZP_11131562.1| peptide deformylase [Celeribacter baekdonensis B30]
gi|407204115|gb|EKE74096.1| peptide deformylase [Celeribacter baekdonensis B30]
Length = 163
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 67/116 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY G GL+ PQVG ++L V + + G +V++NP + +S++ + +E C
Sbjct: 35 MFDTMYAAPGRGLAGPQVGAMLRLFVMDATWKEGVKSPLVMINPEILSHSDERVEMDEVC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LS PG+ A V RP + I D++G + AR+ QHEFDHL G + F+R+
Sbjct: 95 LSIPGVEAPVTRPTRITIRWVDLDGETHVREMDGAEARIAQHEFDHLNGRVHFDRL 150
>gi|392552735|ref|ZP_10299872.1| peptide deformylase [Pseudoalteromonas spongiae UST010723-006]
Length = 170
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 78/129 (60%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+A QV I+ +++V + V E G E +VL+NP + K I EEGC
Sbjct: 35 MLETMYDENGIGLAATQVDIHQRIVVID-VSEEG-NEPLVLINPEIIKKDGSKIS-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG +A V+R E+V I A D NG ++ L A QHE DHL+G+LF + ++
Sbjct: 92 LSVPGSYAKVDRAETVTIKAFDENGNQYEKDADGLLAVCIQHELDHLKGVLFIDYLSPLK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RQRIRKKLE 160
>gi|254784305|ref|YP_003071733.1| peptide deformylase [Teredinibacter turnerae T7901]
gi|259645186|sp|C5BKQ0.1|DEF_TERTT RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|237684580|gb|ACR11844.1| peptide deformylase [Teredinibacter turnerae T7901]
Length = 168
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ Q++V + + E E +V +NPR++ + YEEGC
Sbjct: 35 MFETMYDAPGIGLAATQVNVHEQIIVID-ISE-NHDEPLVFINPRIDVLDETLFDYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V RP V++ A + +G F + L A QHE DHL+G LF + +++
Sbjct: 93 LSVPGFYEEVTRPRHVRVTALNRDGEEFVLEPEGLLAVCIQHEIDHLKGKLFVDYVSNIK 152
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 153 RQRIRKKLE 161
>gi|15639744|ref|NP_219194.1| polypeptide deformylase (def) [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189025982|ref|YP_001933754.1| polypeptide deformylase [Treponema pallidum subsp. pallidum SS14]
gi|338706709|ref|YP_004673477.1| peptide deformylase [Treponema paraluiscuniculi Cuniculi A]
gi|378973266|ref|YP_005221872.1| peptide deformylase [Treponema pallidum subsp. pertenue str.
SamoaD]
gi|378974333|ref|YP_005222941.1| peptide deformylase [Treponema pallidum subsp. pertenue str.
Gauthier]
gi|378975391|ref|YP_005224001.1| peptide deformylase [Treponema pallidum subsp. pallidum DAL-1]
gi|378982242|ref|YP_005230549.1| peptide deformylase [Treponema pallidum subsp. pertenue str. CDC2]
gi|384422253|ref|YP_005631612.1| peptide deformylase [Treponema pallidum subsp. pallidum str.
Chicago]
gi|408502613|ref|YP_006870057.1| peptide deformylase [Treponema pallidum subsp. pallidum str. Mexico
A]
gi|6014952|sp|O83738.1|DEF_TREPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|238689341|sp|B2S3Z6.1|DEF_TREPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|3323063|gb|AAC65724.1| polypeptide deformylase (def) [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189018557|gb|ACD71175.1| polypeptide deformylase [Treponema pallidum subsp. pallidum SS14]
gi|291060119|gb|ADD72854.1| peptide deformylase [Treponema pallidum subsp. pallidum str.
Chicago]
gi|335344770|gb|AEH40686.1| peptide deformylase [Treponema paraluiscuniculi Cuniculi A]
gi|374677591|gb|AEZ57884.1| peptide deformylase [Treponema pallidum subsp. pertenue str.
SamoaD]
gi|374678661|gb|AEZ58953.1| peptide deformylase [Treponema pallidum subsp. pertenue str. CDC2]
gi|374679730|gb|AEZ60021.1| peptide deformylase [Treponema pallidum subsp. pertenue str.
Gauthier]
gi|374680791|gb|AEZ61081.1| peptide deformylase [Treponema pallidum subsp. pallidum DAL-1]
gi|408475976|gb|AFU66741.1| peptide deformylase [Treponema pallidum subsp. pallidum str. Mexico
A]
Length = 162
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 68/122 (55%), Gaps = 5/122 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF VM G+GL+APQVG V++ V + E +NP++ S + YEEGC
Sbjct: 32 MFRVMRGAGGVGLAAPQVGRTVRVFVVDV-----EHHVRAFINPQITAASEEQSSYEEGC 86
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ V RP V + D NG R +V + ARV QHE+DHL GILF +R+ +
Sbjct: 87 LSIPHIYERVLRPRRVSVQYLDENGKRCAVDADGILARVIQHEYDHLDGILFLDRIDEKR 146
Query: 121 LD 122
D
Sbjct: 147 RD 148
>gi|146280418|ref|YP_001170571.1| peptide deformylase [Pseudomonas stutzeri A1501]
gi|339492105|ref|YP_004712398.1| peptide deformylase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
gi|386018662|ref|YP_005936686.1| peptide deformylase [Pseudomonas stutzeri DSM 4166]
gi|158514117|sp|A4VFH8.1|DEF_PSEU5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|145568623|gb|ABP77729.1| polypeptide deformylase [Pseudomonas stutzeri A1501]
gi|327478634|gb|AEA81944.1| peptide deformylase [Pseudomonas stutzeri DSM 4166]
gi|338799477|gb|AEJ03309.1| peptide deformylase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
Length = 168
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEPR--VFINPEFEPLTDQMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V+I A D +G + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQKVRIKALDRDGKPYELIAEGLLAVCIQHECDHLNGKLFVDYLSSLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|359781166|ref|ZP_09284391.1| peptide deformylase [Pseudomonas psychrotolerans L19]
gi|359371226|gb|EHK71792.1| peptide deformylase [Pseudomonas psychrotolerans L19]
Length = 168
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +L+V + V E + E +V +NP + ++ Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHRRLVVID-VSE-DKSEPLVFINPEAEPLTQELGEYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + V RPE V++ A D +G F + L A QHE DHL G LF + ++
Sbjct: 93 LSIPGFYEKVCRPERVRVKALDRDGKPFELECDGLLAVCIQHEIDHLDGKLFVDYLSPLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|265985144|ref|ZP_06097879.1| peptide deformylase [Brucella sp. 83/13]
gi|306838492|ref|ZP_07471332.1| peptide deformylase [Brucella sp. NF 2653]
gi|264663736|gb|EEZ33997.1| peptide deformylase [Brucella sp. 83/13]
gi|306406424|gb|EFM62663.1| peptide deformylase [Brucella sp. NF 2653]
Length = 175
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 70/117 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY GIGL+A QVG ++++V + E + +NP + + S++ YEEGC
Sbjct: 35 MFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKEGEPKAPHIFINPTIVQSSDERSTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP +VK++ D +G S+ L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPATVKVNYFDADGKPQSMEADGLMATCLQHEIDHLNGVLFIDHIS 151
>gi|398868370|ref|ZP_10623769.1| peptide deformylase [Pseudomonas sp. GM78]
gi|398233340|gb|EJN19274.1| peptide deformylase [Pseudomonas sp. GM78]
Length = 168
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRTEPR--VFINPEFEPLTDEMEQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VK+ A D +G + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQKVKVKALDRDGQPYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|423092858|ref|ZP_17080654.1| peptide deformylase [Pseudomonas fluorescens Q2-87]
gi|397882446|gb|EJK98933.1| peptide deformylase [Pseudomonas fluorescens Q2-87]
Length = 168
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSEPR--VFINPEFETLTDEMEQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V+I A D +G + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQKVRIKALDRDGQPYEMIAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|418296812|ref|ZP_12908655.1| peptide deformylase [Agrobacterium tumefaciens CCNWGS0286]
gi|355538987|gb|EHH08229.1| peptide deformylase [Agrobacterium tumefaciens CCNWGS0286]
Length = 170
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 69/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E IV +NP + K S+ + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVARRMLVIDVAREGEEKTPIVFINPEILKVSDDVSTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP S+ + +G + +V L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPASLTVQYVGRDGKQQTVEADGLLATCLQHEIDHLNGVLFIDHIS 151
>gi|398841293|ref|ZP_10598516.1| peptide deformylase [Pseudomonas sp. GM102]
gi|398862313|ref|ZP_10617923.1| peptide deformylase [Pseudomonas sp. GM79]
gi|398108801|gb|EJL98750.1| peptide deformylase [Pseudomonas sp. GM102]
gi|398230960|gb|EJN16964.1| peptide deformylase [Pseudomonas sp. GM79]
Length = 168
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP ++++ Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSEPR--VFINPEFEVLTDEVDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VKI A+D +G + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQKVKIKAQDRDGQPYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|330500987|ref|YP_004377856.1| peptide deformylase [Pseudomonas mendocina NK-01]
gi|328915273|gb|AEB56104.1| peptide deformylase [Pseudomonas mendocina NK-01]
Length = 168
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ +++V + ++ E V +NP +++M Y+EGC
Sbjct: 35 MFETMYDAPGIGLAATQVNVHKRVVVMDLSEDKSEPR--VFINPEFESLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL G LF + +++
Sbjct: 93 LSVPGFYENVDRPQKVKIKALDRDGQPYELIAEGLLAVCIQHECDHLNGKLFVDYLSNLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|375362216|ref|YP_005130255.1| peptide deformylase [Bacillus amyloliquefaciens subsp. plantarum
CAU B946]
gi|421731758|ref|ZP_16170881.1| peptide deformylase [Bacillus amyloliquefaciens subsp. plantarum
M27]
gi|451347057|ref|YP_007445688.1| peptide deformylase [Bacillus amyloliquefaciens IT-45]
gi|371568210|emb|CCF05060.1| peptide deformylase [Bacillus amyloliquefaciens subsp. plantarum
CAU B946]
gi|407073971|gb|EKE46961.1| peptide deformylase [Bacillus amyloliquefaciens subsp. plantarum
M27]
gi|449850815|gb|AGF27807.1| peptide deformylase [Bacillus amyloliquefaciens IT-45]
Length = 160
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI + V + +GE E I LVNP + + S + E GC
Sbjct: 35 MYDTMLEMDGVGLAAPQIGILKRAAVVD-IGE--ESGRIDLVNPVILEKSGEQTGVE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LSFPG+ DV RP+ VK+ A D G F + AR QHE DHL GILF ++T
Sbjct: 91 LSFPGVFGDVTRPDYVKVKAHDRKGKPFILEAEGFLARAVQHEMDHLDGILFTSKIT 147
>gi|365157092|ref|ZP_09353373.1| peptide deformylase [Bacillus smithii 7_3_47FAA]
gi|363625826|gb|EHL76837.1| peptide deformylase [Bacillus smithii 7_3_47FAA]
Length = 161
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 68/116 (58%), Gaps = 4/116 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + M + DG+GL+APQVGI++Q+ V + E G I LVNP + + E GC
Sbjct: 35 MHETMLEADGVGLAAPQVGIDLQVAVVDIGDENGM---IALVNPEILETKGTQTDIE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LS PG++ +V RP VK+ A+D G F + + AR QHE DHL GILF ++
Sbjct: 91 LSIPGLYGEVTRPYYVKVKAKDWKGRTFIIEANGFLARAIQHEIDHLHGILFTTKV 146
>gi|333381472|ref|ZP_08473154.1| polypeptide deformylase [Dysgonomonas gadei ATCC BAA-286]
gi|332830442|gb|EGK03070.1| polypeptide deformylase [Dysgonomonas gadei ATCC BAA-286]
Length = 187
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 80/133 (60%), Gaps = 10/133 (7%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERG---EGEEIVLVNPRVNKYSNKMIP 55
MF+ MY DGIGL+APQ+G++++L V + P+ E G + V +NP + + + +++
Sbjct: 34 MFETMYNADGIGLAAPQIGLDIRLFVIDLEPLAEDNPIYSGFKKVFINPVIIEETGEVVK 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
EEGCLS PGI+ V+R E ++I D N AR QHE+DH++GILF ++
Sbjct: 94 MEEGCLSIPGINEGVDRNEKIRIQYLDENFVSHDEVYDAFFARCIQHEYDHIEGILFIDK 153
Query: 116 MTDDVLDSIREQL 128
++ IR+QL
Sbjct: 154 IS-----GIRKQL 161
>gi|149201578|ref|ZP_01878552.1| peptide deformylase [Roseovarius sp. TM1035]
gi|149144626|gb|EDM32655.1| peptide deformylase [Roseovarius sp. TM1035]
Length = 172
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 71/129 (55%), Gaps = 6/129 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQVG+ +L+V + V + G IV++NP + +S + YEEG
Sbjct: 34 MLETMYDAPGIGLAAPQVGVMDRLIVLDCVKDEGATPRPIVMLNPEITAFSEEKSVYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P ADV RP V++ D++G L A QHE DHL G LF D
Sbjct: 94 CLSIPDQFADVTRPAEVEMRWMDLDGVEHQEGFGGLWATCVQHEIDHLDGKLFI-----D 148
Query: 120 VLDSIREQL 128
L +++ QL
Sbjct: 149 YLSAMKRQL 157
>gi|289548788|ref|YP_003473776.1| peptide deformylase [Thermocrinis albus DSM 14484]
gi|289182405|gb|ADC89649.1| peptide deformylase [Thermocrinis albus DSM 14484]
Length = 174
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 73/118 (61%), Gaps = 2/118 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGE-EIVLVNPRVNKYSNKMIPYEEG 59
M+D MY +G+GL+A Q+G +++MV + +R ++VL+NP++ + + I Y EG
Sbjct: 34 MWDTMYAEEGVGLAANQIGEPLRIMVIDTTPKRESPPVKLVLINPQLIE-AEGHITYREG 92
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLSFPG+ +V R V+ A D++G L PA VFQHE DHL GI F +R++
Sbjct: 93 CLSFPGLSVEVTRYSKVRFRALDLSGEEKEYQLEGFPAIVFQHELDHLNGITFIDRLS 150
>gi|222099700|ref|YP_002534268.1| peptide deformylase [Thermotoga neapolitana DSM 4359]
gi|254767608|sp|B9K7G9.1|DEF_THENN RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|221572090|gb|ACM22902.1| Peptide deformylase [Thermotoga neapolitana DSM 4359]
Length = 164
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 76/128 (59%), Gaps = 5/128 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY DG+GL+APQVGI+ + V + G G + ++NP + + S + EEGC
Sbjct: 33 MIETMYHYDGVGLAAPQVGISQRFFVMDV----GNGP-VAVINPEILEASPETEIAEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFP I ++ER + VK+ +++ G L PARVFQHEFDHL G+L +R+
Sbjct: 88 LSFPEIFVEIERSKRVKVRYQNVRGEFVEEELEGYPARVFQHEFDHLNGVLIIDRIKPAK 147
Query: 121 LDSIREQL 128
+R++L
Sbjct: 148 RLLLRKRL 155
>gi|288574972|ref|ZP_06393329.1| peptide deformylase [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288570713|gb|EFC92270.1| peptide deformylase [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 164
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 72/117 (61%), Gaps = 6/117 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M +MY+ DG+GL+APQVG ++++ V EG+ VL+NPR+ Y + + +EGC
Sbjct: 35 MESLMYEYDGVGLAAPQVGESLKVAVIA-----YEGKLHVLINPRIVDYDGRQVD-QEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LSFPGI DV RP SV ++A+D NG +S+ AR HE DHL G L + ++
Sbjct: 89 LSFPGIFEDVARPASVVVEAQDENGEPYSIEAEGFLARAMCHEIDHLNGKLMIDHLS 145
>gi|395495802|ref|ZP_10427381.1| peptide deformylase [Pseudomonas sp. PAMC 25886]
Length = 168
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E +V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHQRVVVMDLSEDRSEP--LVFINPEFETLTDEMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + +V+RP+ VKI A D +G F + L A QHE DHL G LF + ++
Sbjct: 93 LSVPDFYENVDRPQRVKIKALDRDGKPFEMIAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|400287228|ref|ZP_10789260.1| peptide deformylase [Psychrobacter sp. PAMC 21119]
Length = 184
Score = 94.7 bits (234), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 77/134 (57%), Gaps = 6/134 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++QL+V + ++ + + V VNP+V + PYEEGC
Sbjct: 35 MIETMYDAQGIGLAASQVDRHIQLIVIDLSEDKNDPK--VFVNPKVTPLVEEKQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT--- 117
LS P ++ VERP V+I+A D NG + + L A QHE DHL G++F + ++
Sbjct: 93 LSVPEVYDSVERPNKVRIEALDENGEKIDEEVEGLLAVCIQHEMDHLNGVIFVDYLSRLK 152
Query: 118 -DDVLDSIREQLEI 130
D +R+ L+I
Sbjct: 153 QTRARDKVRKVLKI 166
>gi|417103872|ref|ZP_11961221.1| peptide deformylase protein [Rhizobium etli CNPAF512]
gi|327191106|gb|EGE58154.1| peptide deformylase protein [Rhizobium etli CNPAF512]
Length = 171
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 69/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + K S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP V ++ D NG +V L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAVVSVEYLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDHIS 151
>gi|254445347|ref|ZP_05058823.1| peptide deformylase [Verrucomicrobiae bacterium DG1235]
gi|198259655|gb|EDY83963.1| peptide deformylase [Verrucomicrobiae bacterium DG1235]
Length = 191
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 14/142 (9%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGE--------------EIVLVNPRV 46
M D MY+ +GIGL+A QVG+ + V + G + + + + NP+V
Sbjct: 34 MVDTMYEAEGIGLAAQQVGLPLMFCVVDLNGCDPDFDYTLDGAKPPFDLFMPMAIANPKV 93
Query: 47 NKYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDH 106
+K + YEEGCLSFP I DVER + ++ + +D+ G + + L R QHE DH
Sbjct: 94 ELIKSKELAYEEGCLSFPEIRGDVERTDWIRCEFQDLQGNPHVIEANGLLGRCIQHEVDH 153
Query: 107 LQGILFFERMTDDVLDSIREQL 128
L GILF +RM VL I+ Q+
Sbjct: 154 LNGILFIDRMKKRVLKKIQPQV 175
>gi|241202826|ref|YP_002973922.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240856716|gb|ACS54383.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 171
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 68/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP V K S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDIAREGEEKQPQVFINPEVVKSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP V + D NG +V L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAVVSVKYLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDYIS 151
>gi|383786925|ref|YP_005471494.1| peptide deformylase [Fervidobacterium pennivorans DSM 9078]
gi|383109772|gb|AFG35375.1| peptide deformylase [Fervidobacterium pennivorans DSM 9078]
Length = 166
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 78/126 (61%), Gaps = 5/126 (3%)
Query: 4 VMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSF 63
MY DG+GL+APQVG++++ + G G +++ VNP + ++S++ EEGCLS
Sbjct: 34 TMYAEDGVGLAAPQVGMSLRFFGMDD----GSGFKMI-VNPEIIEHSDEKELGEEGCLSI 88
Query: 64 PGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDS 123
PG+ ADV R + V++ +D +G L PAR+FQHE+DHL G+LF + + +
Sbjct: 89 PGVFADVWRYKWVRVRYQDEHGVYHEELLEGYPARIFQHEYDHLDGVLFIDHLDTKTRTA 148
Query: 124 IREQLE 129
+ +QL+
Sbjct: 149 LAQQLK 154
>gi|398989735|ref|ZP_10692968.1| peptide deformylase [Pseudomonas sp. GM24]
gi|399012774|ref|ZP_10715092.1| peptide deformylase [Pseudomonas sp. GM16]
gi|398115018|gb|EJM04813.1| peptide deformylase [Pseudomonas sp. GM16]
gi|398146961|gb|EJM35685.1| peptide deformylase [Pseudomonas sp. GM24]
Length = 168
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + +M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRTEPR--VFINPEFESLTEEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V+I A D +G + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQKVRIKALDRDGKPYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|418938199|ref|ZP_13491761.1| Peptide deformylase [Rhizobium sp. PDO1-076]
gi|375055200|gb|EHS51473.1| Peptide deformylase [Rhizobium sp. PDO1-076]
Length = 170
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 69/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+A QVG+ +++V + E E E +V +NP + + S++ YEEGC
Sbjct: 35 MLETMYEAPGIGLAAIQVGVARRMLVIDISKEGDEREPLVFINPEIVRSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP ++ + + D G L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAAITVKSLDREGRETLTEADGLLATCLQHEIDHLNGVLFIDHIS 151
>gi|325291800|ref|YP_004277664.1| polypeptide deformylase [Agrobacterium sp. H13-3]
gi|325059653|gb|ADY63344.1| polypeptide deformylase peptide deformylase [Agrobacterium sp.
H13-3]
Length = 170
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 69/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QVG+ +++V + E E + +V +NP + + S+ + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQVGVPRRMLVIDVSREDEEKKPVVFINPEILRVSDDVSAYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP S+ + D +G V L A QHE DHL GILF + ++
Sbjct: 95 LSIPDYYAEVERPASLTVRYVDRDGKHQMVDADGLLATCLQHEIDHLNGILFIDHIS 151
>gi|83855044|ref|ZP_00948574.1| peptide deformylase [Sulfitobacter sp. NAS-14.1]
gi|83842887|gb|EAP82054.1| peptide deformylase [Sulfitobacter sp. NAS-14.1]
Length = 153
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M MY GIGL+APQ+G+ +L+V + V E GE +V+ NP + S+ + YEEG
Sbjct: 15 MLATMYDAPGIGLAAPQIGVMNRLIVMDCVKEEGEAPRPLVMFNPEIIAASDALNTYEEG 74
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
CLS P ADV RP V + DI+G + + + L A QHE DHL G LF +
Sbjct: 75 CLSIPEQFADVTRPADVDVRWIDIDGNEQTETFTKLWATCVQHEIDHLDGKLFID 129
>gi|372267039|ref|ZP_09503087.1| peptide deformylase [Alteromonas sp. S89]
Length = 168
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ G+GL+A Q+ ++ +++V + V E + E +VL+NP V ++ Y+EGC
Sbjct: 35 MFETMYEAPGVGLAATQINVHERIVVID-VSE-DQSEPLVLINPEVEVLDPEIHKYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + VERP +++ A D NG +++ L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYEKVERPRKIRLKALDRNGETYALEAEGLLAVCIQHEIDHLDGKLFVDYISPLK 152
Query: 121 LDSIREQLE 129
+ IR +LE
Sbjct: 153 RNRIRSKLE 161
>gi|299771931|ref|YP_003733957.1| peptide deformylase [Acinetobacter oleivorans DR1]
gi|424741089|ref|ZP_18169450.1| peptide deformylase [Acinetobacter baumannii WC-141]
gi|298702019|gb|ADI92584.1| peptide deformylase [Acinetobacter oleivorans DR1]
gi|422945022|gb|EKU39993.1| peptide deformylase [Acinetobacter baumannii WC-141]
Length = 176
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++QL+V + + E +V +NP++ + YEEGC
Sbjct: 35 MLETMYAAPGIGLAASQVDRHIQLIVID--LSEAKDEPLVFINPKITPLTEDKQQYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ VERP VKI+A ++ G F + L A QHE DHL G LF + ++
Sbjct: 93 LSVPQIYDKVERPSRVKIEAINLEGQAFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLK 152
Query: 121 LDSIREQLE 129
RE++E
Sbjct: 153 RQRAREKVE 161
>gi|153008675|ref|YP_001369890.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188]
gi|404318473|ref|ZP_10966406.1| peptide deformylase [Ochrobactrum anthropi CTS-325]
gi|151560563|gb|ABS14061.1| peptide deformylase [Ochrobactrum anthropi ATCC 49188]
Length = 175
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 70/117 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY GIGL+A QVG ++++V + E V +NP + ++++ YEEGC
Sbjct: 35 MFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKEDEPKAPHVFINPEIVGVTDEVSTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP ++K++ D +G + + L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAAIKVNYFDADGKQHLIEADGLMATCLQHEIDHLNGVLFIDHIS 151
>gi|395800088|ref|ZP_10479367.1| peptide deformylase [Pseudomonas sp. Ag1]
gi|421140895|ref|ZP_15600891.1| peptide deformylase [Pseudomonas fluorescens BBc6R8]
gi|395335930|gb|EJF67792.1| peptide deformylase [Pseudomonas sp. Ag1]
gi|404508097|gb|EKA22071.1| peptide deformylase [Pseudomonas fluorescens BBc6R8]
Length = 168
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E +V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVDVHQRVVVMDLSEDRSEP--LVFINPEFETLTDEMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + +V+RP+ VKI A D +G F + L A QHE DHL G LF + ++
Sbjct: 93 LSVPDFYENVDRPQRVKIKALDRDGKPFEMIAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|399518641|ref|ZP_10759595.1| peptide deformylase [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399113135|emb|CCH36153.1| peptide deformylase [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 168
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ +++V + ++ E V +NP +++M Y+EGC
Sbjct: 35 MFETMYDAPGIGLAATQVNVHKRVVVMDLSEDKSEPR--VFINPEFEPLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL G LF + +++
Sbjct: 93 LSVPGFYENVDRPQKVKIKALDRDGQPYELIAEGLLAVCIQHECDHLNGKLFVDYLSNLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|262281295|ref|ZP_06059076.1| peptide deformylase 1 [Acinetobacter calcoaceticus RUH2202]
gi|262257121|gb|EEY75858.1| peptide deformylase 1 [Acinetobacter calcoaceticus RUH2202]
Length = 176
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++QL+V + + E +V +NP++ + YEEGC
Sbjct: 35 MLETMYAAPGIGLAASQVDHHIQLIVID--LSEAKDEPLVFINPKITPLTEDKQQYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ VERP VKI+A ++ G F + L A QHE DHL G LF + ++
Sbjct: 93 LSVPQIYDKVERPSRVKIEAINLEGQAFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLK 152
Query: 121 LDSIREQLE 129
RE++E
Sbjct: 153 RQRAREKVE 161
>gi|254515964|ref|ZP_05128024.1| peptide deformylase [gamma proteobacterium NOR5-3]
gi|219675686|gb|EED32052.1| peptide deformylase [gamma proteobacterium NOR5-3]
Length = 168
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++ +L+V + R ++ +NP+V + + Y+EGC
Sbjct: 35 MLETMYAASGIGLAATQVNVHQRLLVLDTSENRDS--PMIFINPQVTILDDTLGSYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V RP +++++A +G FS+ L L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYEEVNRPRTIRVEALGRDGKAFSLELDGLTAICLQHEIDHLDGKLFVDYISPLK 152
Query: 121 LDSIREQLE 129
+ IR +LE
Sbjct: 153 RNRIRSKLE 161
>gi|398818324|ref|ZP_10576916.1| peptide deformylase [Brevibacillus sp. BC25]
gi|398028092|gb|EJL21616.1| peptide deformylase [Brevibacillus sp. BC25]
Length = 158
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 5/114 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY DG+GL+APQVGI+ +++V + G+G I ++NP + ++ + Y EGC
Sbjct: 35 MADTMYDADGVGLAAPQVGISKRVIVMDC----GDGL-IEMINPEIVEHEGEQYDYPEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
LS PG+ DV R + +K+ D NG + DL +R QHE DHL G+LF +
Sbjct: 90 LSIPGLQGDVRRHKWIKLRGHDRNGNVVELEADDLLSRCAQHEIDHLNGVLFID 143
>gi|387812479|ref|YP_005427956.1| peptide deformylase [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381337486|emb|CCG93533.1| peptide deformylase [Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 167
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ Q++V + ++ E V +NP+V ++ +EGC
Sbjct: 34 MFETMYDARGIGLAATQVDVHKQIIVMDLSEDKTEPR--VFINPKVEVLDGELEAMQEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + DV+R E +I ARD +G F + L A QHE DHL G LF + ++
Sbjct: 92 LSVPGFYEDVKRIEHCRITARDRDGKEFVLEAEGLLAVCIQHEMDHLNGKLFVDYLSQLK 151
Query: 121 LDSIREQLE 129
+ IR++LE
Sbjct: 152 RNRIRKKLE 160
>gi|410456989|ref|ZP_11310836.1| peptide deformylase [Bacillus bataviensis LMG 21833]
gi|409926963|gb|EKN64114.1| peptide deformylase [Bacillus bataviensis LMG 21833]
Length = 161
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 72/117 (61%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+G++ ++ + + RG I ++NPRV + + + EGC
Sbjct: 35 MYDTMIEYDGVGLAAPQIGLDARIAIVDIDDVRGT---IEMINPRVIETTGEQTG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LSFP + +V RP VKI+A D G ++S+ AR QHE DHL GILF +++
Sbjct: 91 LSFPNLFGEVTRPNYVKIEAYDRKGRKYSLEAEGFLARAIQHEIDHLDGILFTTKVS 147
>gi|406998998|gb|EKE16793.1| hypothetical protein ACD_10C00794G0003 [uncultured bacterium]
Length = 170
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 74/128 (57%), Gaps = 6/128 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+APQVG+ +++V + + + G E +VL+NP+V S + YEEGC
Sbjct: 34 MLETMYDAPGIGLAAPQVGVMRRVIVMDCIKD-GPPEPMVLLNPQVIWSSEDLSTYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P +A+V+RP +V++ D+NG L A QHE DHL G LF D
Sbjct: 93 LSIPDQYAEVKRPAAVRVRWMDLNGEEQERGFEGLWATCVQHEIDHLDGKLFI-----DY 147
Query: 121 LDSIREQL 128
L ++ Q+
Sbjct: 148 LGPLKRQM 155
>gi|381179529|ref|ZP_09888380.1| peptide deformylase [Treponema saccharophilum DSM 2985]
gi|380768578|gb|EIC02566.1| peptide deformylase [Treponema saccharophilum DSM 2985]
Length = 193
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ M + +G+GL+APQVGI+ + V + + V +NP++ S +M YEEGC
Sbjct: 36 MFETMIEANGVGLAAPQVGISKRFFVVM----SDDDVKRVFINPQIVSTSAEMCDYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
LS PG + ++ RP V + A D G F++ L AR+ QHE DHL GI++ +R
Sbjct: 92 LSLPGFNENIRRPAKVTVQALDEKGKPFTLEAEGLLARIIQHENDHLDGIVYIDR 146
>gi|226313317|ref|YP_002773211.1| peptide deformylase [Brevibacillus brevis NBRC 100599]
gi|226096265|dbj|BAH44707.1| peptide deformylase [Brevibacillus brevis NBRC 100599]
Length = 158
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 5/114 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY DG+GL+APQVGI+ +++V + G+G I ++NP + ++ + Y EGC
Sbjct: 35 MADTMYDADGVGLAAPQVGISKRVIVMDC----GDGL-IEMINPEIIEHEGEQYDYPEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
LS PG+ DV R + +K+ D NG + DL +R QHE DHL G+LF +
Sbjct: 90 LSIPGLQGDVRRHKWIKLRGHDRNGNVVELEADDLLSRCAQHEIDHLNGVLFID 143
>gi|408479915|ref|ZP_11186134.1| peptide deformylase [Pseudomonas sp. R81]
Length = 168
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++++++V + +R E + V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHLRVVVMDLSEDRSEPK--VYINPEFEPLTDEMGEYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + +VERP VKI A D +G F + L A QHE DHL G LF + ++
Sbjct: 93 LSVPEFYENVERPLRVKIKALDRDGKPFELIAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|15887717|ref|NP_353398.1| polypeptide deformylase [Agrobacterium fabrum str. C58]
gi|335033098|ref|ZP_08526470.1| peptide deformylase [Agrobacterium sp. ATCC 31749]
gi|23396541|sp|Q8UID1.1|DEF_AGRT5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|15155278|gb|AAK86183.1| polypeptide deformylase [Agrobacterium fabrum str. C58]
gi|333795774|gb|EGL67099.1| peptide deformylase [Agrobacterium sp. ATCC 31749]
Length = 170
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 69/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E +V +NP + K S+ + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVAREGEEKTPVVFINPEILKVSDDISTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP S+ + +G + +V L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPASLTVQYVGRDGKQQTVEADGLLATCLQHEIDHLNGVLFIDHIS 151
>gi|152988653|ref|YP_001345416.1| peptide deformylase [Pseudomonas aeruginosa PA7]
gi|150963811|gb|ABR85836.1| peptide deformylase [Pseudomonas aeruginosa PA7]
Length = 168
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + ++ E V +NP + +M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPR--VFINPEFEPLTEEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V+I A D +G F L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQKVRIKALDRDGKPFEEVAEGLLAVCIQHECDHLNGRLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D IR++LE
Sbjct: 153 RDRIRKKLE 161
>gi|375335510|ref|ZP_09776854.1| peptide deformylase [Succinivibrionaceae bacterium WG-1]
Length = 175
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 75/129 (58%), Gaps = 8/129 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
MF+ MY +GIGL+APQ+G+ Q++V N G + E+VL+NP + NK I EG
Sbjct: 35 MFETMYAEEGIGLAAPQIGLLKQIVVINVEGIDNKEAELVLINPEIINKEGETGI--NEG 92
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P + A V+R E + + A++I+G F+ L A QHE DHL G LF D
Sbjct: 93 CLSVPELRAFVKRAEKITVKAQNIDGETFTKEADGLLAICMQHEIDHLHGTLFI-----D 147
Query: 120 VLDSIREQL 128
L ++++ L
Sbjct: 148 YLSTMKQNL 156
>gi|418021014|ref|ZP_12660185.1| peptide deformylase [Candidatus Regiella insecticola R5.15]
gi|347603632|gb|EGY28426.1| peptide deformylase [Candidatus Regiella insecticola R5.15]
Length = 174
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 79/136 (58%), Gaps = 8/136 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-------IVLVNPRVNKYSNKM 53
MFD MY +GIGL+A QV I+ Q++V + +R + E +VL+NP + + S +
Sbjct: 35 MFDTMYAEEGIGLAATQVNIHKQIIVIHISDDRDQNERTEAHHCPLVLINPELLEESGET 94
Query: 54 IPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFF 113
EEGCLS PG+ A V R E VKI A D +G F++ L A QHE DHL+G LF
Sbjct: 95 -GIEEGCLSIPGVRARVTRSEKVKIRALDRDGNSFTLEADGLLAICIQHEMDHLKGKLFI 153
Query: 114 ERMTDDVLDSIREQLE 129
+ ++ I++++E
Sbjct: 154 DYLSPLKFQRIQKKIE 169
>gi|190890084|ref|YP_001976626.1| peptide deformylase [Rhizobium etli CIAT 652]
gi|190695363|gb|ACE89448.1| peptide deformylase protein [Rhizobium etli CIAT 652]
Length = 171
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 68/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + K S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP V + D NG +V L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAVVSVKYLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDHIS 151
>gi|421111054|ref|ZP_15571535.1| peptide deformylase [Leptospira santarosai str. JET]
gi|410803487|gb|EKS09624.1| peptide deformylase [Leptospira santarosai str. JET]
Length = 170
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 78/141 (55%), Gaps = 12/141 (8%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGE----EIVLVNPRVNKYSNKMIP 55
MFD M+ +G+GL+APQ+GI Q++V ER G E V++NP + +
Sbjct: 30 MFDTMHHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPNVPERVILNPIITPLTKDTSG 89
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+ EGCLS PG+ VERP +++ D G +F ++ A V+QHE DHL GIL+ +R
Sbjct: 90 FWEGCLSVPGMRGYVERPNKIRMQWMDEKGNQFDETIDGYKAVVYQHECDHLSGILYVDR 149
Query: 116 MTD-------DVLDSIREQLE 129
+ D D LDS R L+
Sbjct: 150 LKDTKLFGFNDTLDSGRNVLD 170
>gi|422346414|ref|ZP_16427328.1| peptide deformylase 1 [Clostridium perfringens WAL-14572]
gi|373225959|gb|EHP48286.1| peptide deformylase 1 [Clostridium perfringens WAL-14572]
Length = 147
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 4/114 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ +G+GL+APQVGI ++ V + + G V +NP + + S + EEGC
Sbjct: 35 MIETMYENNGVGLAAPQVGILKRIFVVDAMDGAGSR---VFINPEILEKSGEQTD-EEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
LS PG H V+R +KI A D+NG F + + AR QHE+DHL+G+LF +
Sbjct: 91 LSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEEFLARAIQHEYDHLEGVLFID 144
>gi|262091714|gb|ACY25304.1| peptide deformylase [uncultured actinobacterium]
Length = 175
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 73/119 (61%), Gaps = 6/119 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M +MY+ G+GL+ PQ+G+ Q+ V++ + + V++NP + + S + + Y+EGC
Sbjct: 36 MLHIMYEAPGLGLAGPQIGVQKQIFVYDV-----DDDPQVILNPTIVESSGEWV-YDEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
LS PG+ ++ RP+ V + + G V +L AR+FQHE DHLQG+L F+RM D
Sbjct: 90 LSIPGLFVEMLRPKEVLVRGLTLEGDEIEVEADELLARLFQHEIDHLQGVLMFDRMLPD 148
>gi|254473716|ref|ZP_05087111.1| peptide deformylase [Pseudovibrio sp. JE062]
gi|211957102|gb|EEA92307.1| peptide deformylase [Pseudovibrio sp. JE062]
Length = 175
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-------EGEEIVLVNPRVNKYSNKM 53
M MY GIGL+A Q+G+ ++ V + V ER E E +V +NP + S +
Sbjct: 35 MLQTMYDAPGIGLAASQIGVMKRMFVLD-VAERESEEDDSVEKEPMVFINPEITWSSEEK 93
Query: 54 IPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFF 113
Y+EGCLS PGI+ DVERP V++ +I G + + L A QHE DHL G+LF
Sbjct: 94 NTYQEGCLSIPGIYEDVERPAEVRVSFLNIEGEKQEIEAGGLLATCIQHELDHLNGVLFI 153
Query: 114 ERMT 117
+ ++
Sbjct: 154 DYLS 157
>gi|110799951|ref|YP_696430.1| peptide deformylase [Clostridium perfringens ATCC 13124]
gi|168210623|ref|ZP_02636248.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626]
gi|168214221|ref|ZP_02639846.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969]
gi|168217031|ref|ZP_02642656.1| polypeptide deformylase [Clostridium perfringens NCTC 8239]
gi|169342685|ref|ZP_02863726.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495]
gi|110674598|gb|ABG83585.1| peptide deformylase [Clostridium perfringens ATCC 13124]
gi|169299191|gb|EDS81261.1| polypeptide deformylase [Clostridium perfringens C str. JGS1495]
gi|170711284|gb|EDT23466.1| polypeptide deformylase [Clostridium perfringens B str. ATCC 3626]
gi|170714299|gb|EDT26481.1| polypeptide deformylase [Clostridium perfringens CPE str. F4969]
gi|182380902|gb|EDT78381.1| polypeptide deformylase [Clostridium perfringens NCTC 8239]
Length = 147
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 4/114 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ +G+GL+APQVGI ++ V + + G V +NP + + S + EEGC
Sbjct: 35 MIETMYENNGVGLAAPQVGILKRIFVVDAMDGAGSR---VFINPEILEKSGEQTD-EEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
LS PG H V+R +KI A D+NG F + + AR QHE+DHL+G+LF +
Sbjct: 91 LSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEEFLARAIQHEYDHLEGVLFID 144
>gi|372278112|ref|ZP_09514148.1| peptide deformylase [Oceanicola sp. S124]
Length = 165
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 65/118 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY G GL+ PQVG+ +L V + + GE +NP++ S++++ EEGC
Sbjct: 34 MFDTMYAAPGRGLAGPQVGVLKRLFVMDCTWKEGEKSPRACLNPQITWRSDELVTREEGC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS PG+ A+V RP V + D N LS A QHE DHL G ++ + ++D
Sbjct: 94 LSIPGVLAEVARPAEVVMCWHDENWVEHEEKLSGFEATCAQHELDHLDGRVYLDYLSD 151
>gi|168207271|ref|ZP_02633276.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987]
gi|170661355|gb|EDT14038.1| polypeptide deformylase [Clostridium perfringens E str. JGS1987]
Length = 147
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 69/114 (60%), Gaps = 4/114 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ +G+GL+APQVGI ++ V + + G V +NP + + S + EEGC
Sbjct: 35 MIETMYENNGVGLAAPQVGILKRIFVVDAMDGAGSR---VFINPEILEKSGEQTD-EEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
LS PG H V+R +KI A D+NG F + + AR QHE+DHL+G+LF +
Sbjct: 91 LSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEEFLARAIQHEYDHLEGVLFID 144
>gi|94676503|ref|YP_588858.1| peptide deformylase [Baumannia cicadellinicola str. Hc (Homalodisca
coagulata)]
gi|123384127|sp|Q1LT56.1|DEF_BAUCH RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|94219653|gb|ABF13812.1| peptide deformylase [Baumannia cicadellinicola str. Hc (Homalodisca
coagulata)]
Length = 167
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 73/117 (62%), Gaps = 3/117 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY +GIGL+APQV IN+ ++V + V E E + +VL+NP + S + EGC
Sbjct: 35 MFDTMYHKNGIGLAAPQVNINLNIIVID-VSENKE-QRLVLINPELLAKSGET-GIHEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P H V R +++K+ A D+NG F++ +DL A QHE DHL G LF + ++
Sbjct: 92 LSIPEQHGFVPRAKNIKVRALDLNGNSFNLETNDLQAICIQHEMDHLVGKLFIDYLS 148
>gi|394993910|ref|ZP_10386649.1| peptide deformylase [Bacillus sp. 916]
gi|393805234|gb|EJD66614.1| peptide deformylase [Bacillus sp. 916]
Length = 160
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 71/117 (60%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI + V + +GE E I LVNP + + S + E GC
Sbjct: 35 MYDTMLEMDGVGLAAPQIGILKRAAVVD-IGE--ESGRIDLVNPVILEKSGEQTGVE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LSFPG++ DV RP+ VK+ A + G F + AR QHE DHL GILF ++T
Sbjct: 91 LSFPGVYGDVTRPDYVKVKAYNRKGKPFILEAEGFLARAVQHEMDHLDGILFTSKIT 147
>gi|90019670|ref|YP_525497.1| peptide deformylase [Saccharophagus degradans 2-40]
gi|123090994|sp|Q21PV5.1|DEF_SACD2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|89949270|gb|ABD79285.1| peptide deformylase [Saccharophagus degradans 2-40]
Length = 172
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ Q++V + +GE + E +V +NP + + YEEGC
Sbjct: 35 MFETMYDAPGIGLAATQVNVHEQVLVID-LGEETK-EPMVFINPSIEILDQEHYEYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + V RP+ +++ A D +G F + L A QHE DHL G LF + +++
Sbjct: 93 LSVPGFYEQVSRPKHIRVTALDRDGKEFVIEPEGLLAVCVQHEMDHLNGKLFVDYVSNIK 152
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 153 RQRIRKKLE 161
>gi|302387077|ref|YP_003822899.1| peptide deformylase [Clostridium saccharolyticum WM1]
gi|302197705|gb|ADL05276.1| peptide deformylase [Clostridium saccharolyticum WM1]
Length = 163
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 74/119 (62%), Gaps = 6/119 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY+ +G+GL+APQVG+ +L+V + G G I L+NP + + S + E GC
Sbjct: 37 MADTMYQEEGVGLAAPQVGVLKRLVVIDI----GAGL-IKLINPEIMEQSGQQQGME-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
LS PGI +V RP+ V+I A++ GA F + +DL AR HE DHL G+LF +++ D
Sbjct: 91 LSVPGISGEVVRPQKVRIKAQNETGAYFELEGTDLLARAICHEIDHLNGVLFIDKIVPD 149
>gi|83941567|ref|ZP_00954029.1| peptide deformylase [Sulfitobacter sp. EE-36]
gi|83847387|gb|EAP85262.1| peptide deformylase [Sulfitobacter sp. EE-36]
Length = 153
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M MY GIGL+APQ+G+ +L+V + V E GE +V+ NP + S+ + YEEG
Sbjct: 15 MLATMYDAPGIGLAAPQIGVMNRLIVMDCVKEEGETPRPLVMFNPEIIAASDALNTYEEG 74
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
CLS P ADV RP V + DI+G + + + L A QHE DHL G LF +
Sbjct: 75 CLSIPEQFADVTRPADVDVRWIDIDGNEQTETFTKLWATCVQHEIDHLDGKLFID 129
>gi|61679585|pdb|1Y6H|A Chain A, Crystal Structure Of Lipdf
gi|61679586|pdb|1Y6H|B Chain B, Crystal Structure Of Lipdf
gi|75765202|pdb|1SV2|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans (lipdf) At Ph7.5
gi|75765203|pdb|1SV2|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans (lipdf) At Ph7.5
gi|75765298|pdb|1VEV|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans (Lipdf) At Ph6.5
gi|75765299|pdb|1VEV|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans (Lipdf) At Ph6.5
gi|75765300|pdb|1VEY|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans (Lipdf) At Ph7.0
gi|75765301|pdb|1VEY|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans (Lipdf) At Ph7.0
gi|75765302|pdb|1VEZ|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans(lipdf) At Ph8.0
gi|75765303|pdb|1VEZ|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans(lipdf) At Ph8.0
Length = 177
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 75/134 (55%), Gaps = 5/134 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGE----EIVLVNPRVNKYSNKMIP 55
MFD M +G+GL+APQ+GI Q++V ER G E +++NP + +
Sbjct: 37 MFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSG 96
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+ EGCLS PG+ VERP +++ D G +F ++ A V+QHE DHLQGIL+ +R
Sbjct: 97 FWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDR 156
Query: 116 MTDDVLDSIREQLE 129
+ D L E L+
Sbjct: 157 LKDTKLFGFNETLD 170
>gi|346310432|ref|ZP_08852448.1| polypeptide deformylase [Collinsella tanakaei YIT 12063]
gi|345897722|gb|EGX67633.1| polypeptide deformylase [Collinsella tanakaei YIT 12063]
Length = 178
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 76/120 (63%), Gaps = 4/120 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNP-VGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
M D M++ G GL+APQVG +QL + + + + + +L+NP + + S+ ++PY EG
Sbjct: 35 MKDDMFENGGCGLAAPQVGELIQLAIVDTDYSDESDYDPYILINPVIVEQSDNLVPYNEG 94
Query: 60 CLSFPGIHADVERPESVKIDARDING--ARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLS PGI+ +++RP+ V ++A +++G R+ S DL QHE DHL G+ FER++
Sbjct: 95 CLSIPGINCEIKRPDHVVVEAYNLDGDLMRYEAS-GDLMCVCLQHEIDHLHGMTMFERLS 153
>gi|419842272|ref|ZP_14365623.1| peptide deformylase [Fusobacterium necrophorum subsp. funduliforme
ATCC 51357]
gi|386902590|gb|EIJ67428.1| peptide deformylase [Fusobacterium necrophorum subsp. funduliforme
ATCC 51357]
Length = 173
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 71/117 (60%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY DG+GL+APQVGI++++ V + +G E ++NP + + + I EEGC
Sbjct: 34 MVETMYARDGVGLAAPQVGISLRMFVCD-IGSPEESNVKKIINPLITPLTEETISVEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ VER +K++ ++ G L PA V QHE+DHL+ LF +R++
Sbjct: 93 LSIPGIYKKVERIAKLKLEYQNEQGEFVEEILEGFPAIVVQHEYDHLEATLFVDRVS 149
>gi|89092291|ref|ZP_01165245.1| peptide deformylase [Neptuniibacter caesariensis]
gi|89083379|gb|EAR62597.1| peptide deformylase [Oceanospirillum sp. MED92]
Length = 171
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV I+ +++ + ++ E +VL+NP ++ Y+EGC
Sbjct: 35 MFETMYAAPGIGLAATQVNIHKRIVTMDISDDQNEP--LVLINPEFEVIDEELHKYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + DV+RP+ +K+ A D NG + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYEDVKRPQKIKLKALDYNGEAYELEAEGLLAVCIQHELDHLNGKLFVDYLSMLK 152
Query: 121 LDSIREQLE 129
+ I+ +LE
Sbjct: 153 RNRIKGKLE 161
>gi|395767509|ref|ZP_10448042.1| peptide deformylase [Bartonella doshiae NCTC 12862]
gi|395413872|gb|EJF80325.1| peptide deformylase [Bartonella doshiae NCTC 12862]
Length = 177
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 71/117 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY GIGL+A Q+GI ++++V + G + +V++NP + S++ Y+EGC
Sbjct: 35 MLDTMYDARGIGLAAIQIGIPLRMLVIDVSGNDTTKDPLVIINPEILWLSDERNLYKEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP+ + + ++ G + + DL A QHE DHL G+LF + ++
Sbjct: 95 LSIPEYYAEVERPKRLCVRYQNREGKQIEIEADDLLATCLQHEIDHLNGLLFIDHIS 151
>gi|417762746|ref|ZP_12410734.1| peptide deformylase [Leptospira interrogans str. 2002000624]
gi|418698207|ref|ZP_13259186.1| peptide deformylase [Leptospira interrogans serovar Bataviae str.
L1111]
gi|409941491|gb|EKN87120.1| peptide deformylase [Leptospira interrogans str. 2002000624]
gi|410762911|gb|EKR29070.1| peptide deformylase [Leptospira interrogans serovar Bataviae str.
L1111]
gi|456969310|gb|EMG10344.1| peptide deformylase [Leptospira interrogans serovar Grippotyphosa
str. LT2186]
gi|456984027|gb|EMG20189.1| peptide deformylase [Leptospira interrogans serovar Copenhageni
str. LT2050]
Length = 170
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 75/134 (55%), Gaps = 5/134 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGE----EIVLVNPRVNKYSNKMIP 55
MFD M +G+GL+APQ+GI Q++V ER G E +++NP + +
Sbjct: 30 MFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSG 89
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+ EGCLS PG+ VERP +++ D G +F ++ A V+QHE DHLQGIL+ +R
Sbjct: 90 FWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDR 149
Query: 116 MTDDVLDSIREQLE 129
+ D L E L+
Sbjct: 150 LKDTKLFGFNETLD 163
>gi|24215138|ref|NP_712619.1| peptide deformylase [Leptospira interrogans serovar Lai str. 56601]
gi|45657385|ref|YP_001471.1| peptide deformylase [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
gi|386074459|ref|YP_005988776.1| peptide deformylase [Leptospira interrogans serovar Lai str. IPAV]
gi|417765931|ref|ZP_12413887.1| peptide deformylase [Leptospira interrogans serovar Bulgarica str.
Mallika]
gi|417772371|ref|ZP_12420260.1| peptide deformylase [Leptospira interrogans serovar Pomona str.
Pomona]
gi|417777652|ref|ZP_12425469.1| peptide deformylase [Leptospira interrogans str. 2002000621]
gi|417783164|ref|ZP_12430887.1| peptide deformylase [Leptospira interrogans str. C10069]
gi|418667698|ref|ZP_13229108.1| peptide deformylase [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|418671695|ref|ZP_13233044.1| peptide deformylase [Leptospira interrogans str. 2002000623]
gi|418680912|ref|ZP_13242149.1| peptide deformylase [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418692497|ref|ZP_13253575.1| peptide deformylase [Leptospira interrogans str. FPW2026]
gi|418704171|ref|ZP_13265050.1| peptide deformylase [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|418711814|ref|ZP_13272566.1| peptide deformylase [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|418716088|ref|ZP_13276156.1| peptide deformylase [Leptospira interrogans str. UI 08452]
gi|418726338|ref|ZP_13284949.1| peptide deformylase [Leptospira interrogans str. UI 12621]
gi|418730628|ref|ZP_13289122.1| peptide deformylase [Leptospira interrogans str. UI 12758]
gi|421084527|ref|ZP_15545386.1| peptide deformylase [Leptospira santarosai str. HAI1594]
gi|421102783|ref|ZP_15563387.1| peptide deformylase [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|421118030|ref|ZP_15578381.1| peptide deformylase [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|421120866|ref|ZP_15581171.1| peptide deformylase [Leptospira interrogans str. Brem 329]
gi|421124019|ref|ZP_15584289.1| peptide deformylase [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|421134892|ref|ZP_15595022.1| peptide deformylase [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|23396549|sp|Q93LE9.1|DEF_LEPIN RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|59797588|sp|Q72S74.1|DEF_LEPIC RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|14626937|gb|AAK70806.1| peptide deformylase [Leptospira interrogans]
gi|24196204|gb|AAN49637.1| peptide deformylase [Leptospira interrogans serovar Lai str. 56601]
gi|45600624|gb|AAS70108.1| putative polypeptide deformylase protein [Leptospira interrogans
serovar Copenhageni str. Fiocruz L1-130]
gi|353458248|gb|AER02793.1| peptide deformylase [Leptospira interrogans serovar Lai str. IPAV]
gi|400327350|gb|EJO79602.1| peptide deformylase [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|400351870|gb|EJP04083.1| peptide deformylase [Leptospira interrogans serovar Bulgarica str.
Mallika]
gi|400357730|gb|EJP13850.1| peptide deformylase [Leptospira interrogans str. FPW2026]
gi|409945742|gb|EKN95757.1| peptide deformylase [Leptospira interrogans serovar Pomona str.
Pomona]
gi|409953865|gb|EKO08361.1| peptide deformylase [Leptospira interrogans str. C10069]
gi|409960248|gb|EKO24002.1| peptide deformylase [Leptospira interrogans str. UI 12621]
gi|410010425|gb|EKO68565.1| peptide deformylase [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410020775|gb|EKO87570.1| peptide deformylase [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410346204|gb|EKO97214.1| peptide deformylase [Leptospira interrogans str. Brem 329]
gi|410367897|gb|EKP23281.1| peptide deformylase [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410432930|gb|EKP77282.1| peptide deformylase [Leptospira santarosai str. HAI1594]
gi|410438506|gb|EKP87592.1| peptide deformylase [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|410572639|gb|EKQ35704.1| peptide deformylase [Leptospira interrogans str. 2002000621]
gi|410581393|gb|EKQ49205.1| peptide deformylase [Leptospira interrogans str. 2002000623]
gi|410756580|gb|EKR18200.1| peptide deformylase [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|410766151|gb|EKR36839.1| peptide deformylase [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|410767780|gb|EKR43041.1| peptide deformylase [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|410774837|gb|EKR54841.1| peptide deformylase [Leptospira interrogans str. UI 12758]
gi|410788099|gb|EKR81826.1| peptide deformylase [Leptospira interrogans str. UI 08452]
gi|455667341|gb|EMF32662.1| peptide deformylase [Leptospira interrogans serovar Pomona str. Fox
32256]
gi|455790002|gb|EMF41898.1| peptide deformylase [Leptospira interrogans serovar Lora str. TE
1992]
gi|456821728|gb|EMF70234.1| peptide deformylase [Leptospira interrogans serovar Canicola str.
LT1962]
Length = 178
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 75/134 (55%), Gaps = 5/134 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGE----EIVLVNPRVNKYSNKMIP 55
MFD M +G+GL+APQ+GI Q++V ER G E +++NP + +
Sbjct: 38 MFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSG 97
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+ EGCLS PG+ VERP +++ D G +F ++ A V+QHE DHLQGIL+ +R
Sbjct: 98 FWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDR 157
Query: 116 MTDDVLDSIREQLE 129
+ D L E L+
Sbjct: 158 LKDTKLFGFNETLD 171
>gi|116053739|ref|YP_788174.1| peptide deformylase [Pseudomonas aeruginosa UCBPP-PA14]
gi|313111460|ref|ZP_07797261.1| polypeptide deformylase [Pseudomonas aeruginosa 39016]
gi|355650971|ref|ZP_09056399.1| peptide deformylase [Pseudomonas sp. 2_1_26]
gi|386062991|ref|YP_005978295.1| peptide deformylase [Pseudomonas aeruginosa NCGM2.S1]
gi|421177852|ref|ZP_15635497.1| peptide deformylase [Pseudomonas aeruginosa CI27]
gi|115588960|gb|ABJ14975.1| polypeptide deformylase [Pseudomonas aeruginosa UCBPP-PA14]
gi|310883763|gb|EFQ42357.1| polypeptide deformylase [Pseudomonas aeruginosa 39016]
gi|348031550|dbj|BAK86910.1| peptide deformylase [Pseudomonas aeruginosa NCGM2.S1]
gi|354826495|gb|EHF10707.1| peptide deformylase [Pseudomonas sp. 2_1_26]
gi|404528714|gb|EKA38777.1| peptide deformylase [Pseudomonas aeruginosa CI27]
Length = 168
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + ++ E V +NP + +M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPR--VFINPEFEPLTEEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V+I A D +G F L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D IR++LE
Sbjct: 153 RDRIRKKLE 161
>gi|33357406|pdb|1N5N|A Chain A, Crystal Structure Of Peptide Deformylase From Pseudomonas
Aeruginosa
gi|33357407|pdb|1N5N|B Chain B, Crystal Structure Of Peptide Deformylase From Pseudomonas
Aeruginosa
gi|47168958|pdb|1S17|A Chain A, Identification Of Novel Potent Bicyclic Peptide
Deformylase Inhibitors
gi|47168959|pdb|1S17|B Chain B, Identification Of Novel Potent Bicyclic Peptide
Deformylase Inhibitors
Length = 180
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + ++ E V +NP + +M Y+EGC
Sbjct: 47 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPR--VFINPEFEPLTEEMDQYQEGC 104
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V+I A D +G F L A QHE DHL G LF + ++
Sbjct: 105 LSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLK 164
Query: 121 LDSIREQLE 129
D IR++LE
Sbjct: 165 RDRIRKKLE 173
>gi|15894999|ref|NP_348348.1| peptide deformylase [Clostridium acetobutylicum ATCC 824]
gi|337736940|ref|YP_004636387.1| peptide deformylase [Clostridium acetobutylicum DSM 1731]
gi|384458447|ref|YP_005670867.1| peptide deformylase [Clostridium acetobutylicum EA 2018]
gi|3023622|sp|O05100.1|DEF1_CLOAB RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|15024688|gb|AAK79688.1|AE007681_9 N-formylmethionyl-tRNA deformylase [Clostridium acetobutylicum ATCC
824]
gi|1905954|gb|AAB50347.1| deformylase [Clostridium acetobutylicum ATCC 824]
gi|325509136|gb|ADZ20772.1| peptide deformylase [Clostridium acetobutylicum EA 2018]
gi|336292911|gb|AEI34045.1| peptide deformylase [Clostridium acetobutylicum DSM 1731]
Length = 150
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 70/118 (59%), Gaps = 6/118 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY DG+GL+APQVGI +L+V + GEG +VL+NP + + S K + E GC
Sbjct: 35 MFETMYNADGVGLAAPQVGILKRLVVIDV----GEGP-VVLINPEILETSGKAVDVE-GC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS P +VERP VK A + G + DL AR HE DHL G+LF +++ +
Sbjct: 89 LSIPERQGEVERPTYVKAKALNEKGEEIVIEAEDLFARAICHETDHLNGVLFVDKLAE 146
>gi|359455369|ref|ZP_09244601.1| peptide deformylase [Pseudoalteromonas sp. BSi20495]
gi|414071411|ref|ZP_11407380.1| peptide deformylase [Pseudoalteromonas sp. Bsw20308]
gi|358047599|dbj|GAA80850.1| peptide deformylase [Pseudoalteromonas sp. BSi20495]
gi|410806131|gb|EKS12128.1| peptide deformylase [Pseudoalteromonas sp. Bsw20308]
Length = 168
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+A QV I+ +++V + ER E +VL+NP++ K I EEGC
Sbjct: 35 MLETMYDENGIGLAATQVDIHQRIVVIDVSEERDEP--LVLINPQIIKKDGSTIS-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P +A V+R E+V + A + NG F + +L A QHE DHLQG LF + ++
Sbjct: 92 LSVPNSYAKVDRAETVTVSALNENGEEFVLDADELLAICIQHELDHLQGKLFIDYLSPLK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RQRIRKKLE 160
>gi|218513698|ref|ZP_03510538.1| peptide deformylase [Rhizobium etli 8C-3]
Length = 171
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 68/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + K S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP V + D NG +V L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAVVSVKYLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDHIS 151
>gi|374621130|ref|ZP_09693664.1| peptide deformylase [gamma proteobacterium HIMB55]
gi|374304357|gb|EHQ58541.1| peptide deformylase [gamma proteobacterium HIMB55]
Length = 168
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +GIGL+A Q+ ++ Q++V + +R V +NP V + +EEGC
Sbjct: 35 MFETMYDANGIGLAASQIDVHEQVIVIDLSNDRSTPR--VFINPNVEVIDESLDGFEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG VERP+++++ A D +G +++ L A QHE DHLQG LF + ++
Sbjct: 93 LSVPGFSESVERPKAIRVTALDQDGTAIDETVTGLLAVCLQHEMDHLQGKLFVDYLSPLK 152
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 153 RQRIRQRLE 161
>gi|319403561|emb|CBI77143.1| polypeptide deformylase [Bartonella rochalimae ATCC BAA-1498]
Length = 176
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 72/124 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QVG+ ++++V + + +V++NP + S++ Y+EGC
Sbjct: 35 MLETMYNAQGIGLAAVQVGVPLRMLVVDIHSKDAPKNPLVIINPEILWVSDERSVYKEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P A+VERP+ +++ RD G + + +DL A QHE DHL G LF + ++
Sbjct: 95 LSIPDYFAEVERPKCLRMCYRDREGKQVEIEANDLLATCLQHEIDHLNGCLFIDHISKTK 154
Query: 121 LDSI 124
D +
Sbjct: 155 RDMV 158
>gi|440738507|ref|ZP_20918037.1| peptide deformylase [Pseudomonas fluorescens BRIP34879]
gi|447919231|ref|YP_007399799.1| peptide deformylase [Pseudomonas poae RE*1-1-14]
gi|440380963|gb|ELQ17511.1| peptide deformylase [Pseudomonas fluorescens BRIP34879]
gi|445203094|gb|AGE28303.1| peptide deformylase [Pseudomonas poae RE*1-1-14]
Length = 168
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++++++V + +R E + V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHLRVVVMDLSEDRSEPK--VYINPEFEPLTDEMGEYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + VERP VKI A D +G F + L A QHE DHL G LF + ++
Sbjct: 93 LSVPEFYESVERPLRVKIKALDRDGKPFELIAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|398900910|ref|ZP_10649897.1| peptide deformylase [Pseudomonas sp. GM50]
gi|398180739|gb|EJM68317.1| peptide deformylase [Pseudomonas sp. GM50]
Length = 168
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP ++++ Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDRSEPR--VFINPEFEVLTDEVDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQKVKIKALDRDGQPYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|374339701|ref|YP_005096437.1| peptide deformylase [Marinitoga piezophila KA3]
gi|372101235|gb|AEX85139.1| peptide deformylase [Marinitoga piezophila KA3]
Length = 176
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 75/117 (64%), Gaps = 7/117 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI-VLVNPRVNKYSNKMIPYEEG 59
M ++MY+ DG+GL+APQ+GI+ + V + +G ++ ++NP + K+ + + +EEG
Sbjct: 34 MAEMMYREDGVGLAAPQIGISRRFFVMD------DGNKLRKVINPEIIKFLGEEVSFEEG 87
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
CLS P I +V+RPE + + + NG L + AR+FQHE+DHL+G LF +R+
Sbjct: 88 CLSIPKIFLNVKRPEGIIVKYTNENGEIVEEELHEYTARIFQHEYDHLEGKLFIDRV 144
>gi|295696040|ref|YP_003589278.1| peptide deformylase [Kyrpidia tusciae DSM 2912]
gi|295411642|gb|ADG06134.1| peptide deformylase [Kyrpidia tusciae DSM 2912]
Length = 155
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 68/118 (57%), Gaps = 6/118 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY DGIGL+APQVGI +++V + +GE G LVNP V + EGC
Sbjct: 35 MADTMYNADGIGLAAPQVGILKRVIVAD-IGEGLLG----LVNPEVVLEEGEQT-GPEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS PGI ADV R V + A+D NG V L AR HE DHL GILF +R+TD
Sbjct: 89 LSIPGIQADVTRAHHVIVRAQDRNGEPLVVDAEGLLARCLLHEIDHLDGILFLDRVTD 146
>gi|409422323|ref|ZP_11259426.1| peptide deformylase [Pseudomonas sp. HYS]
Length = 168
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A Q+ ++ +++V + +R E V +NP + +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQINVHKRIVVMDLSEDRSEPR--VFINPELEMLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP VK+ A D +G + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPIRVKVKALDRDGKPYELVAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|259417507|ref|ZP_05741426.1| peptide deformylase [Silicibacter sp. TrichCH4B]
gi|259346413|gb|EEW58227.1| peptide deformylase [Silicibacter sp. TrichCH4B]
Length = 174
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 74/129 (57%), Gaps = 6/129 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+GI +L+V + V E GE +V+ NPRV S++ YEEG
Sbjct: 34 MLETMYAAPGIGLAAPQIGILDRLIVLDCVKEGEGEARPLVMFNPRVIAASDETNVYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +A+V RP+ V ++ D +G + + L A QHE DHL G LF D
Sbjct: 94 CLSIPEQYAEVTRPKVVDVEWLDRDGNLQTETFDGLWATCVQHEIDHLDGKLFI-----D 148
Query: 120 VLDSIREQL 128
L ++ Q+
Sbjct: 149 YLKPLKRQM 157
>gi|254510174|ref|ZP_05122241.1| peptide deformylase [Rhodobacteraceae bacterium KLH11]
gi|221533885|gb|EEE36873.1| peptide deformylase [Rhodobacteraceae bacterium KLH11]
Length = 172
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 74/129 (57%), Gaps = 6/129 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+G+ +L+V + V E GE +V+ NP+V S+++ YEEG
Sbjct: 34 MLETMYDAPGIGLAAPQIGVLDRLIVVDCVKEEGETPRPLVMFNPQVIASSDEINVYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +A+V RP +V + D +G + DL A QHE DHL G LF D
Sbjct: 94 CLSIPDQYAEVTRPRTVDVTWMDRDGNLQQETFDDLWATCVQHEIDHLNGKLFI-----D 148
Query: 120 VLDSIREQL 128
L ++ Q+
Sbjct: 149 YLKPLKRQM 157
>gi|218460831|ref|ZP_03500922.1| peptide deformylase [Rhizobium etli Kim 5]
Length = 171
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 68/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + K S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP V + D NG +V L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAVVSVKYLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDYIS 151
>gi|119471681|ref|ZP_01614066.1| N-terminal methionine peptide deformylase [Alteromonadales
bacterium TW-7]
gi|359450339|ref|ZP_09239793.1| peptide deformylase [Pseudoalteromonas sp. BSi20480]
gi|392540119|ref|ZP_10287256.1| peptide deformylase [Pseudoalteromonas marina mano4]
gi|119445460|gb|EAW26747.1| N-terminal methionine peptide deformylase [Alteromonadales
bacterium TW-7]
gi|358043888|dbj|GAA76042.1| peptide deformylase [Pseudoalteromonas sp. BSi20480]
Length = 168
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+A QV I+ +++V + ER E +VL+NP++ K I EEGC
Sbjct: 35 MLETMYDENGIGLAATQVNIHQRIVVIDVSEERDEP--LVLINPQIIKKDGSTIS-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P +A V+R E+V + A + NG F + +L A QHE DHLQG LF + ++
Sbjct: 92 LSVPNSYAKVDRAETVTVAALNENGEEFVLDADELLAICIQHELDHLQGKLFIDYLSPLK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RQRIRKKLE 160
>gi|52842801|ref|YP_096600.1| peptide deformylase [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|54295432|ref|YP_127847.1| hypothetical protein lpl2518 [Legionella pneumophila str. Lens]
gi|54298584|ref|YP_124953.1| hypothetical protein lpp2648 [Legionella pneumophila str. Paris]
gi|148358671|ref|YP_001249878.1| peptide deformylase [Legionella pneumophila str. Corby]
gi|296108239|ref|YP_003619940.1| peptide deformylase [Legionella pneumophila 2300/99 Alcoy]
gi|378778490|ref|YP_005186929.1| peptide deformylase [Legionella pneumophila subsp. pneumophila ATCC
43290]
gi|397665185|ref|YP_006506723.1| peptide deformylase [Legionella pneumophila subsp. pneumophila]
gi|397668268|ref|YP_006509805.1| peptide deformylase [Legionella pneumophila subsp. pneumophila]
gi|52629912|gb|AAU28653.1| peptide deformylase [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|53752369|emb|CAH13801.1| hypothetical protein lpp2648 [Legionella pneumophila str. Paris]
gi|53755264|emb|CAH16758.1| hypothetical protein lpl2518 [Legionella pneumophila str. Lens]
gi|148280444|gb|ABQ54532.1| peptide deformylase [Legionella pneumophila str. Corby]
gi|295650141|gb|ADG25988.1| peptide deformylase [Legionella pneumophila 2300/99 Alcoy]
gi|307611474|emb|CBX01145.1| hypothetical protein LPW_28441 [Legionella pneumophila 130b]
gi|364509306|gb|AEW52830.1| peptide deformylase [Legionella pneumophila subsp. pneumophila ATCC
43290]
gi|395128596|emb|CCD06814.1| peptide deformylase [Legionella pneumophila subsp. pneumophila]
gi|395131679|emb|CCD09972.1| peptide deformylase [Legionella pneumophila subsp. pneumophila]
Length = 170
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 73/118 (61%), Gaps = 5/118 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPR-VNKYSNKMIPYEEG 59
MFD MY G+GL+APQ+G++++L V + VG++ E +IV+VNP V+ + K +EEG
Sbjct: 35 MFDTMYDARGVGLAAPQIGVSLRLSVIDIVGDKKE--QIVIVNPEIVSSHGEK--EFEEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLS PG + V R E V + A D G F ++ L A QHE DH+ G LF + ++
Sbjct: 91 CLSVPGAYDTVVRAEKVTVKALDRFGKPFEITGEGLLAECLQHEIDHMNGKLFVDMLS 148
>gi|340755493|ref|ZP_08692177.1| peptide deformylase [Fusobacterium sp. D12]
gi|421500784|ref|ZP_15947775.1| peptide deformylase [Fusobacterium necrophorum subsp. funduliforme
Fnf 1007]
gi|313687280|gb|EFS24115.1| peptide deformylase [Fusobacterium sp. D12]
gi|402267139|gb|EJU16537.1| peptide deformylase [Fusobacterium necrophorum subsp. funduliforme
Fnf 1007]
Length = 173
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 71/117 (60%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY DG+GL+APQVGI++++ V + +G E ++NP + + + I EEGC
Sbjct: 34 MVETMYARDGVGLAAPQVGISLRMFVCD-IGTPEESNVKKIINPLITPLTEETISVEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ VER +K++ ++ G L PA V QHE+DHL+ LF +R++
Sbjct: 93 LSIPGIYKKVERIAKLKLEYQNEQGEFVEEILEGFPAIVVQHEYDHLEATLFVDRVS 149
>gi|229587596|ref|YP_002869715.1| peptide deformylase [Pseudomonas fluorescens SBW25]
gi|388466634|ref|ZP_10140844.1| peptide deformylase [Pseudomonas synxantha BG33R]
gi|229359462|emb|CAY46303.1| peptide deformylase [Pseudomonas fluorescens SBW25]
gi|388010214|gb|EIK71401.1| peptide deformylase [Pseudomonas synxantha BG33R]
Length = 168
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++++++V + +R E V +NP +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHLRVVVMDLSEDRSEPR--VYINPEFEPLTDEMGEYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + +VERP VKI A D +G F + L A QHE DHL G LF + ++
Sbjct: 93 LSVPEFYENVERPLRVKIKALDRDGKPFELIAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|269123156|ref|YP_003305733.1| peptide deformylase [Streptobacillus moniliformis DSM 12112]
gi|268314482|gb|ACZ00856.1| peptide deformylase [Streptobacillus moniliformis DSM 12112]
Length = 169
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 76/130 (58%), Gaps = 5/130 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M M +GIGL+A QVGI + V + E +VNP + + +M+ ++EGC
Sbjct: 35 MVKTMRLANGIGLAANQVGIGKRFFVLEI-----DDEITKVVNPEILSFGEEMVEFQEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI +V RPES+ + +D NG L+ L +R FQHE DH+ GILF ++++
Sbjct: 90 LSIPGIFKNVLRPESIVVRYQDENGNFVERELNGLKSRAFQHELDHIDGILFIDKISPMS 149
Query: 121 LDSIREQLEI 130
+ IR++LE+
Sbjct: 150 RNLIRKKLEV 159
>gi|443474080|ref|ZP_21064101.1| Peptide deformylase [Pseudomonas pseudoalcaligenes KF707]
gi|442905015|gb|ELS29930.1| Peptide deformylase [Pseudomonas pseudoalcaligenes KF707]
Length = 168
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ +++V + ++ E V +NP + +M Y+EGC
Sbjct: 35 MFETMYAAPGIGLAATQVNVHKRVVVMDLSEDKSEPR--VFINPEFEPLTEEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VKI A D +G + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQKVKIKALDRDGQPYELIAEGLLAVCIQHECDHLNGKLFVDYLSSLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|349610696|ref|ZP_08890029.1| peptide deformylase [Neisseria sp. GT4A_CT1]
gi|348609572|gb|EGY59308.1| peptide deformylase [Neisseria sp. GT4A_CT1]
Length = 167
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 3/117 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E +V +NP + + + YEEGC
Sbjct: 35 MFETMYEARGIGLAATQVDVHERVVVMDLTEDRSEP--LVFINPVIIEKDGET-TYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ V R E VK++A + G +F++ L A QHE DHL GI+F ER++
Sbjct: 92 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVERLS 148
>gi|399044438|ref|ZP_10738086.1| peptide deformylase [Rhizobium sp. CF122]
gi|398057217|gb|EJL49191.1| peptide deformylase [Rhizobium sp. CF122]
Length = 178
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 69/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + +V VNP + S++ YEEGC
Sbjct: 41 MLETMYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPLVFVNPEILASSDERSVYEEGC 100
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP +V + D +G +V L A QHE DHL G+LF + ++
Sbjct: 101 LSIPDYYAEVERPAAVTVKYLDRDGKEQTVQADGLLATCLQHEIDHLNGVLFIDHIS 157
>gi|223936792|ref|ZP_03628702.1| peptide deformylase [bacterium Ellin514]
gi|223894643|gb|EEF61094.1| peptide deformylase [bacterium Ellin514]
Length = 191
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 77/144 (53%), Gaps = 16/144 (11%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVG--ERGEGEEI-------------VLVNPR 45
MF+ MY++ GIGL+A QV VQ+ V + G +R E+ VL+NP
Sbjct: 34 MFETMYESRGIGLAAQQVARAVQITVIDVRGITDRPSTLELNGKPASVEKFMPLVLINPE 93
Query: 46 VNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFD 105
V K + EGCLSFP I A++ RPE+V + A + NG R L AR QHE D
Sbjct: 94 VKPVGPK-VAGTEGCLSFPEIFAEITRPETVDVVAMNENGERIEFRAGGLLARAVQHETD 152
Query: 106 HLQGILFFERMTDDVLDSIREQLE 129
HL GILF +RM + ++ +LE
Sbjct: 153 HLNGILFIDRMDTETKQELKPELE 176
>gi|152976233|ref|YP_001375750.1| peptide deformylase [Bacillus cytotoxicus NVH 391-98]
gi|152024985|gb|ABS22755.1| peptide deformylase [Bacillus cytotoxicus NVH 391-98]
Length = 158
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 75/118 (63%), Gaps = 6/118 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M++ M DG+GL+APQVG+++Q+ V + + G+ I L+NP + K ++ P EG
Sbjct: 35 MYETMVAADGVGLAAPQVGVSLQVAVIDIGDDTGK---IELINPVILEKRGEQVGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLSFPG++ +VER E +K+ A++ G F + + AR QHE DHL G+LF ++T
Sbjct: 90 CLSFPGLYGEVERAEYIKVRAQNRRGKIFLLEANGFLARAIQHEIDHLHGVLFTSKVT 147
>gi|424915776|ref|ZP_18339140.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM597]
gi|392851952|gb|EJB04473.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM597]
Length = 171
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 68/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + K S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP V + D NG +V L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAVVSVKYLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDYIS 151
>gi|407801721|ref|ZP_11148564.1| peptide deformylase [Alcanivorax sp. W11-5]
gi|407024038|gb|EKE35782.1| peptide deformylase [Alcanivorax sp. W11-5]
Length = 168
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++ +L+V + ER + +V +NP + ++ Y+EGC
Sbjct: 35 MIETMYDASGIGLAATQVNVHQRLLVLDVSEERDQP--LVFINPEITPLTDDTKTYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + VERP+ V++ A + +G F + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYETVERPDRVRVKALNRDGDVFEMDCDGLLAVCLQHEIDHLDGKLFVDHISRLK 152
Query: 121 LDSIREQLE 129
D I++++E
Sbjct: 153 RDRIKKKME 161
>gi|359686220|ref|ZP_09256221.1| peptide deformylase [Leptospira santarosai str. 2000030832]
gi|422003961|ref|ZP_16351186.1| peptide deformylase [Leptospira santarosai serovar Shermani str. LT
821]
gi|417257316|gb|EKT86719.1| peptide deformylase [Leptospira santarosai serovar Shermani str. LT
821]
Length = 178
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 12/141 (8%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGE----EIVLVNPRVNKYSNKMIP 55
MFD M+ +G+GL+APQ+GI +++V ER G E V++NP + +
Sbjct: 38 MFDTMHHAEGVGLAAPQIGILKRIVVVGSEDNERYPGTPNVPERVILNPTITPLTKDTSG 97
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+ EGCLS PG+ VERP +++ D G +F ++ A V+QHE DHL GIL+ +R
Sbjct: 98 FWEGCLSVPGMRGYVERPNKIRMQWMDEKGNQFDETIDGYKAVVYQHECDHLSGILYVDR 157
Query: 116 MTD-------DVLDSIREQLE 129
+ D D LDS R L+
Sbjct: 158 LKDTKLFGFNDTLDSGRNVLD 178
>gi|424888917|ref|ZP_18312520.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2012]
gi|393174466|gb|EJC74510.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2012]
Length = 171
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 68/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + K S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP V + D NG +V L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAVVSVKYLDRNGKEQTVDADGLLATCLQHEIDHLNGVLFIDYIS 151
>gi|418677006|ref|ZP_13238284.1| peptide deformylase [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|418686053|ref|ZP_13247223.1| peptide deformylase [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
gi|418739581|ref|ZP_13295963.1| peptide deformylase [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|421090211|ref|ZP_15551008.1| peptide deformylase [Leptospira kirschneri str. 200802841]
gi|400322906|gb|EJO70762.1| peptide deformylase [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|410001009|gb|EKO51632.1| peptide deformylase [Leptospira kirschneri str. 200802841]
gi|410739479|gb|EKQ84207.1| peptide deformylase [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
gi|410753164|gb|EKR10135.1| peptide deformylase [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 178
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 75/134 (55%), Gaps = 5/134 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGE----EIVLVNPRVNKYSNKMIP 55
MFD M +G+GL+APQ+GI Q++V ER G E +++NP + +
Sbjct: 38 MFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERIILNPIITPLTKDTSG 97
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+ EGCLS PG+ VERP +++ D G +F ++ A V+QHE DHLQGIL+ +R
Sbjct: 98 FWEGCLSVPGMRGYVERPNRIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDR 157
Query: 116 MTDDVLDSIREQLE 129
+ D L E L+
Sbjct: 158 LKDTKLFGFNETLD 171
>gi|163756828|ref|ZP_02163937.1| peptide deformylase [Kordia algicida OT-1]
gi|161323217|gb|EDP94557.1| peptide deformylase [Kordia algicida OT-1]
Length = 196
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 76/129 (58%), Gaps = 12/129 (9%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVG------------ERGEGEEIVLVNPRVNK 48
MF+ MY G+GL+APQVG+ ++L + + G ++ EG + V +N ++ +
Sbjct: 34 MFETMYNAYGVGLAAPQVGLPIRLFMIDATGFAEDEELDEEQRKQLEGMKKVFINAKIIE 93
Query: 49 YSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
+ + + EGCLS P I DV RPES+KI+ D N + L ARV QHE+DH++
Sbjct: 94 RNGEPWVFNEGCLSIPDIREDVFRPESIKIEYMDENFEKHVEEYDGLAARVIQHEYDHIE 153
Query: 109 GILFFERMT 117
GILF ++++
Sbjct: 154 GILFTDKLS 162
>gi|338813381|ref|ZP_08625510.1| peptide deformylase [Acetonema longum DSM 6540]
gi|337274740|gb|EGO63248.1| peptide deformylase [Acetonema longum DSM 6540]
Length = 152
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 6/115 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +G+GL+APQVGI ++++V + GEG + L+NP + + + EGC
Sbjct: 35 MAQTMYGAEGVGLAAPQVGILLRIVVIDA----GEGL-VELINPEIVESDGTQVA-SEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
LS PG++ DVER V ++ + +G + ++ + L AR QHE DHL GILF ER
Sbjct: 89 LSIPGVYGDVERYADVTVEGLNRSGKKIRIAANGLLARALQHEIDHLNGILFIER 143
>gi|229086420|ref|ZP_04218596.1| Peptide deformylase [Bacillus cereus Rock3-44]
gi|228696936|gb|EEL49745.1| Peptide deformylase [Bacillus cereus Rock3-44]
Length = 124
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 74/118 (62%), Gaps = 6/118 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + M DG+GL+APQVG+++Q+ V + + G+ I L+NP + K ++ P EG
Sbjct: 1 MHETMLVADGVGLAAPQVGVSLQVAVVDIGDDTGK---IELINPVILEKRGEQVGP--EG 55
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLSFPG++ +VER E +K+ A++ G F + D AR QHE DHL G+LF ++T
Sbjct: 56 CLSFPGLYGEVERAEYIKVRAQNRRGKIFLLEADDFLARAIQHEIDHLHGVLFTSKVT 113
>gi|424898026|ref|ZP_18321600.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393182253|gb|EJC82292.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 171
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 68/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + K S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDERSIYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP V + D NG +V L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAVVSVKYLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDYIS 151
>gi|374329412|ref|YP_005079596.1| peptide deformylase [Pseudovibrio sp. FO-BEG1]
gi|359342200|gb|AEV35574.1| Peptide deformylase [Pseudovibrio sp. FO-BEG1]
Length = 175
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 69/124 (55%), Gaps = 8/124 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-------EGEEIVLVNPRVNKYSNKM 53
M MY GIGL+A Q+G+ ++ V + V ER E E +V +NP + S +
Sbjct: 35 MLQTMYDAPGIGLAASQIGVMKRMFVLD-VAERESEEDDSVEKEPMVFINPEITWSSEEK 93
Query: 54 IPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFF 113
Y+EGCLS PG++ DVERP V++ +I G + + L A QHE DHL G+LF
Sbjct: 94 NTYQEGCLSIPGVYEDVERPAEVRVSFLNIEGEKQEIEAGGLLATCIQHELDHLNGVLFI 153
Query: 114 ERMT 117
+ ++
Sbjct: 154 DYLS 157
>gi|424879774|ref|ZP_18303406.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WU95]
gi|392516137|gb|EIW40869.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WU95]
Length = 171
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 68/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + K S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDISREGEEKQPQVFINPEIVKSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP V + D NG +V L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAVVSVKYLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDYIS 151
>gi|421128697|ref|ZP_15588909.1| peptide deformylase [Leptospira kirschneri str. 2008720114]
gi|410360107|gb|EKP07142.1| peptide deformylase [Leptospira kirschneri str. 2008720114]
Length = 170
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 75/134 (55%), Gaps = 5/134 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGE----EIVLVNPRVNKYSNKMIP 55
MFD M +G+GL+APQ+GI Q++V ER G E +++NP + +
Sbjct: 30 MFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERIILNPIITPLTKDTSG 89
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+ EGCLS PG+ VERP +++ D G +F ++ A V+QHE DHLQGIL+ +R
Sbjct: 90 FWEGCLSVPGMRGYVERPNRIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDR 149
Query: 116 MTDDVLDSIREQLE 129
+ D L E L+
Sbjct: 150 LKDTKLFGFNETLD 163
>gi|365122897|ref|ZP_09339790.1| peptide deformylase [Tannerella sp. 6_1_58FAA_CT1]
gi|363641105|gb|EHL80512.1| peptide deformylase [Tannerella sp. 6_1_58FAA_CT1]
Length = 185
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 74/133 (55%), Gaps = 10/133 (7%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI-----VLVNPRVNKYSNKMIP 55
MF+ M K+DG+GL+APQ+G++++++V N E ++N + + S I
Sbjct: 34 MFETMDKSDGVGLAAPQIGLDIRVLVINLDALSETFPEYKDYRKAMINAHIEEVSGDKIT 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
EEGCLS PGIH V R E +KI RD + + ARV QHE+DHL+G +F
Sbjct: 94 REEGCLSLPGIHEPVTRQEKIKITYRDQDFVEHTEVFEGYVARVIQHEYDHLEGKMFI-- 151
Query: 116 MTDDVLDSIREQL 128
D L IR+QL
Sbjct: 152 ---DHLSPIRKQL 161
>gi|312958120|ref|ZP_07772643.1| peptide deformylase [Pseudomonas fluorescens WH6]
gi|311287551|gb|EFQ66109.1| peptide deformylase [Pseudomonas fluorescens WH6]
Length = 212
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++++++V + +R E V +NP +++M Y+EGC
Sbjct: 79 MFETMYEAPGIGLAATQVNVHLRVVVMDLSEDRSEPR--VYINPEFEPLTDEMGEYQEGC 136
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + +VERP VKI A D +G F + L A QHE DHL G LF + ++
Sbjct: 137 LSVPEFYENVERPLRVKIKALDRDGKPFEMIAEGLLAVCIQHECDHLNGKLFVDYLSTLK 196
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 197 RDRIKKKLE 205
>gi|149200572|ref|ZP_01877580.1| peptide deformylase [Lentisphaera araneosa HTCC2155]
gi|149136344|gb|EDM24789.1| peptide deformylase [Lentisphaera araneosa HTCC2155]
Length = 197
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 80/140 (57%), Gaps = 11/140 (7%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGER----GEGEEIV-------LVNPRVNKY 49
M D MY+ +GIGL+APQVG ++++ V + E +GE+++ L+NP +
Sbjct: 39 MVDTMYEENGIGLAAPQVGRSLRVFVIDTHFEDETYGSDGEKLLCPKMPLALINPEIIST 98
Query: 50 SNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQG 109
S + I +EEGCLS P I+A V RP ++ + A+ + G L +R QHE DHL G
Sbjct: 99 SGEDISFEEGCLSIPQINAAVVRPSNIVLKAQTLEGEIIEADFGGLTSRCMQHEIDHLDG 158
Query: 110 ILFFERMTDDVLDSIREQLE 129
+LF ++ D L + ++LE
Sbjct: 159 VLFTDKAEKDDLKLVAKKLE 178
>gi|409396477|ref|ZP_11247463.1| peptide deformylase [Pseudomonas sp. Chol1]
gi|409118958|gb|EKM95348.1| peptide deformylase [Pseudomonas sp. Chol1]
Length = 168
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + ++ E V +NP + +M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDKSEPR--VFINPEFEALTEEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V++ A D +G + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQKVRVKALDRDGQPYEIIAEGLLAVCIQHECDHLNGKLFVDYLSSLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|424873417|ref|ZP_18297079.1| peptide deformylase [Rhizobium leguminosarum bv. viciae WSM1455]
gi|393169118|gb|EJC69165.1| peptide deformylase [Rhizobium leguminosarum bv. viciae WSM1455]
Length = 171
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 68/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + K S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDISREGEEKQPQVFINPEIVKSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP V + D NG +V L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAVVAVKYLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDYIS 151
>gi|116250199|ref|YP_766037.1| peptide deformylase [Rhizobium leguminosarum bv. viciae 3841]
gi|115254847|emb|CAK05921.1| putative peptide deformylase (polypeptide deformylase) [Rhizobium
leguminosarum bv. viciae 3841]
Length = 171
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 68/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + K S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDISREGEEKQPQVFINPEIVKSSDERSLYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP V + D NG +V L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAVVSVKYLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDYIS 151
>gi|410091109|ref|ZP_11287686.1| peptide deformylase [Pseudomonas viridiflava UASWS0038]
gi|409761677|gb|EKN46736.1| peptide deformylase [Pseudomonas viridiflava UASWS0038]
Length = 168
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + +++M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEPR--VFINPEIEMLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V++ A +G + + L A QHE DHL G LF + +++
Sbjct: 93 LSVPGFYENVDRPQKVRVKALGRDGEPYELVAEGLLAICIQHECDHLNGKLFVDYLSNLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|239832661|ref|ZP_04680990.1| peptide deformylase [Ochrobactrum intermedium LMG 3301]
gi|444311604|ref|ZP_21147209.1| peptide deformylase [Ochrobactrum intermedium M86]
gi|239824928|gb|EEQ96496.1| peptide deformylase [Ochrobactrum intermedium LMG 3301]
gi|443485034|gb|ELT47831.1| peptide deformylase [Ochrobactrum intermedium M86]
Length = 175
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 69/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY GIGL+A QVG ++++V + E V +NP + +++ YEEGC
Sbjct: 35 MFDTMYDAPGIGLAAIQVGEPIRMLVIDLAKEGEPKAPHVFINPEIVGVTDEASTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP ++K++ D +G ++ L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAAIKVNYFDADGKPHAMEADGLMATCLQHEIDHLNGVLFIDHIS 151
>gi|15595217|ref|NP_248709.1| peptide deformylase [Pseudomonas aeruginosa PAO1]
gi|107099012|ref|ZP_01362930.1| hypothetical protein PaerPA_01000019 [Pseudomonas aeruginosa PACS2]
gi|218888765|ref|YP_002437629.1| peptide deformylase [Pseudomonas aeruginosa LESB58]
gi|254237739|ref|ZP_04931062.1| polypeptide deformylase [Pseudomonas aeruginosa C3719]
gi|254243131|ref|ZP_04936453.1| polypeptide deformylase [Pseudomonas aeruginosa 2192]
gi|296386491|ref|ZP_06875990.1| peptide deformylase [Pseudomonas aeruginosa PAb1]
gi|386056090|ref|YP_005972612.1| peptide deformylase [Pseudomonas aeruginosa M18]
gi|392981429|ref|YP_006480016.1| peptide deformylase [Pseudomonas aeruginosa DK2]
gi|416866946|ref|ZP_11915972.1| peptide deformylase [Pseudomonas aeruginosa 138244]
gi|416887710|ref|ZP_11922769.1| peptide deformylase [Pseudomonas aeruginosa 152504]
gi|418587865|ref|ZP_13151886.1| peptide deformylase [Pseudomonas aeruginosa MPAO1/P1]
gi|418591628|ref|ZP_13155524.1| peptide deformylase [Pseudomonas aeruginosa MPAO1/P2]
gi|419757390|ref|ZP_14283733.1| peptide deformylase [Pseudomonas aeruginosa PADK2_CF510]
gi|420141067|ref|ZP_14648783.1| peptide deformylase [Pseudomonas aeruginosa CIG1]
gi|421153046|ref|ZP_15612608.1| peptide deformylase [Pseudomonas aeruginosa ATCC 14886]
gi|421156964|ref|ZP_15616383.1| peptide deformylase [Pseudomonas aeruginosa ATCC 25324]
gi|421167539|ref|ZP_15625722.1| peptide deformylase [Pseudomonas aeruginosa ATCC 700888]
gi|421183715|ref|ZP_15641164.1| peptide deformylase [Pseudomonas aeruginosa E2]
gi|421514625|ref|ZP_15961311.1| peptide deformylase [Pseudomonas aeruginosa PAO579]
gi|424943600|ref|ZP_18359363.1| polypeptide deformylase [Pseudomonas aeruginosa NCMG1179]
gi|451983637|ref|ZP_21931913.1| Peptide deformylase [Pseudomonas aeruginosa 18A]
gi|17432949|sp|Q9I7A8.1|DEF_PSEAE RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|9945838|gb|AAG03409.1|AE004441_10 polypeptide deformylase [Pseudomonas aeruginosa PAO1]
gi|126169670|gb|EAZ55181.1| polypeptide deformylase [Pseudomonas aeruginosa C3719]
gi|126196509|gb|EAZ60572.1| polypeptide deformylase [Pseudomonas aeruginosa 2192]
gi|218768988|emb|CAW24746.1| polypeptide deformylase [Pseudomonas aeruginosa LESB58]
gi|334833122|gb|EGM12290.1| peptide deformylase [Pseudomonas aeruginosa 152504]
gi|334833891|gb|EGM12916.1| peptide deformylase [Pseudomonas aeruginosa 138244]
gi|346060046|dbj|GAA19929.1| polypeptide deformylase [Pseudomonas aeruginosa NCMG1179]
gi|347302396|gb|AEO72510.1| peptide deformylase [Pseudomonas aeruginosa M18]
gi|375041377|gb|EHS34078.1| peptide deformylase [Pseudomonas aeruginosa MPAO1/P1]
gi|375049687|gb|EHS42178.1| peptide deformylase [Pseudomonas aeruginosa MPAO1/P2]
gi|384396189|gb|EIE42609.1| peptide deformylase [Pseudomonas aeruginosa PADK2_CF510]
gi|392316934|gb|AFM62314.1| peptide deformylase [Pseudomonas aeruginosa DK2]
gi|403246194|gb|EJY59934.1| peptide deformylase [Pseudomonas aeruginosa CIG1]
gi|404348353|gb|EJZ74690.1| peptide deformylase [Pseudomonas aeruginosa PAO579]
gi|404524330|gb|EKA34679.1| peptide deformylase [Pseudomonas aeruginosa ATCC 14886]
gi|404534227|gb|EKA43980.1| peptide deformylase [Pseudomonas aeruginosa ATCC 700888]
gi|404539809|gb|EKA49256.1| peptide deformylase [Pseudomonas aeruginosa E2]
gi|404551100|gb|EKA59787.1| peptide deformylase [Pseudomonas aeruginosa ATCC 25324]
gi|451758583|emb|CCQ84436.1| Peptide deformylase [Pseudomonas aeruginosa 18A]
gi|453044695|gb|EME92417.1| peptide deformylase [Pseudomonas aeruginosa PA21_ST175]
Length = 168
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + ++ E V +NP + M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPR--VFINPEFEPLTEDMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V+I A D +G F L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D IR++LE
Sbjct: 153 RDRIRKKLE 161
>gi|405377555|ref|ZP_11031496.1| peptide deformylase [Rhizobium sp. CF142]
gi|397325992|gb|EJJ30316.1| peptide deformylase [Rhizobium sp. CF142]
Length = 171
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 66/117 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QVG+ +++V + E E + +V +NP + S+ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQVGVPRRMLVIDLSKEGEEKQPLVFINPEIVSSSDDRSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP V + D G SV L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAKVTVKYLDREGKEQSVEADGLLATCLQHEIDHLNGVLFIDHIS 151
>gi|386289394|ref|ZP_10066524.1| peptide deformylase [gamma proteobacterium BDW918]
gi|385277457|gb|EIF41439.1| peptide deformylase [gamma proteobacterium BDW918]
Length = 172
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ GIGL+A QV ++ Q++V + +R E +V +NP ++ + Y+EGC
Sbjct: 35 MFDTMYEAPGIGLAASQVNVHEQIVVIDISEDRSE--PLVFINPEISVLDHDTFQYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PG + VERP+ +++ A D NG F ++ L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYETVERPQHIRVKALDRNGDAFEMTPEGLLAVCIQHENDHLLGKLFVDYIS 149
>gi|253987938|ref|YP_003039294.1| peptide deformylase 2 [Photorhabdus asymbiotica]
gi|253779388|emb|CAQ82549.1| peptide deformylase 2 [Photorhabdus asymbiotica]
Length = 168
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 4/118 (3%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
M D MY TD GIGL+APQVG +++ + R E ++LVNP++ + +I +EG
Sbjct: 34 MLDTMYSTDNGIGLAAPQVGRKEAVIIIDISATRDE--PLILVNPKIVEKDRSVIG-QEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLS PG +ADVER E VK++A + +G +V D A V QHE DHL G +F + ++
Sbjct: 91 CLSVPGYYADVERFEKVKVEALNRHGETITVESEDFLAIVMQHEIDHLHGKIFIDYLS 148
>gi|224023749|ref|ZP_03642115.1| hypothetical protein BACCOPRO_00465 [Bacteroides coprophilus DSM
18228]
gi|224016971|gb|EEF74983.1| hypothetical protein BACCOPRO_00465 [Bacteroides coprophilus DSM
18228]
Length = 184
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 76/133 (57%), Gaps = 10/133 (7%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI-----VLVNPRVNKYSNKMIP 55
MF+ M + DG+GL+APQVG+ ++++V N + E V +NP + + ++M+
Sbjct: 34 MFETMDRADGVGLAAPQVGLPIRVVVVNLDVLSDDMPEFKDFKRVYINPHILETGDEMVS 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
EEGCLS PGIH V+RP+ + + D N + ARV QHEFDHL G +F
Sbjct: 94 MEEGCLSLPGIHESVKRPDRIHVTYLDENMTAHDEWVEGYLARVMQHEFDHLDGTMFI-- 151
Query: 116 MTDDVLDSIREQL 128
D L S+R+Q+
Sbjct: 152 ---DHLSSLRKQM 161
>gi|225850189|ref|YP_002730423.1| peptide deformylase [Persephonella marina EX-H1]
gi|225646575|gb|ACO04761.1| peptide deformylase [Persephonella marina EX-H1]
Length = 176
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 70/116 (60%), Gaps = 4/116 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE---IVLVNPRVNKYSNKMIPYE 57
MF MY+ DG+GL+A Q+GI +++V + EGE+ +VL+NP++ + + I
Sbjct: 35 MFKKMYELDGVGLAANQIGIPYRIIVIDTTVREEEGEKGVKLVLINPQIVEKEGE-IEST 93
Query: 58 EGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFF 113
EGCLSFPG+ + R E VK+ A+DING + D + V QHE DH+ GI F
Sbjct: 94 EGCLSFPGVQITIPRAERVKVKAKDINGNDIEIEGKDFLSVVLQHEIDHINGIPFI 149
>gi|419952771|ref|ZP_14468918.1| peptide deformylase [Pseudomonas stutzeri TS44]
gi|387970816|gb|EIK55094.1| peptide deformylase [Pseudomonas stutzeri TS44]
Length = 168
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + ++ Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDRSEPR--VFINPEFEALTEELDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ VK+ A D +G + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQKVKVRALDRDGQPYELIAEGLLAVCIQHECDHLNGKLFVDYLSSLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|357419717|ref|YP_004932709.1| peptide deformylase [Thermovirga lienii DSM 17291]
gi|355397183|gb|AER66612.1| peptide deformylase [Thermovirga lienii DSM 17291]
Length = 162
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 73/117 (62%), Gaps = 6/117 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFDVM K DG+GL+APQVG++ Q+ V + G++ VL+NP+V + S EEGC
Sbjct: 35 MFDVMRKEDGVGLAAPQVGVSKQIAVVSY-----GGQDYVLINPKVLESSGSE-RREEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ +VERP V ++A + G ++ AR F HE DHL+G LF + ++
Sbjct: 89 LSVPGIYEEVERPYRVVVEACNEKGKVERIAAEGFLARAFLHEIDHLRGKLFIDYLS 145
>gi|304388911|ref|ZP_07370958.1| peptide deformylase [Neisseria meningitidis ATCC 13091]
gi|427826210|ref|ZP_18993269.1| peptide deformylase [Neisseria meningitidis H44/76]
gi|304337045|gb|EFM03232.1| peptide deformylase [Neisseria meningitidis ATCC 13091]
gi|316985956|gb|EFV64895.1| peptide deformylase [Neisseria meningitidis H44/76]
Length = 181
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 3/117 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY++ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 49 MFETMYESRGIGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIVEKDGET-TYEEGC 105
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ V R E VK++A + G +F++ L A QHE DHL GI+F ER++
Sbjct: 106 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVERLS 162
>gi|15676038|ref|NP_273168.1| peptide deformylase [Neisseria meningitidis MC58]
gi|121633988|ref|YP_974233.1| peptide deformylase [Neisseria meningitidis FAM18]
gi|161870945|ref|YP_001600125.1| peptide deformylase [Neisseria meningitidis 053442]
gi|218767202|ref|YP_002341714.1| peptide deformylase [Neisseria meningitidis Z2491]
gi|254805844|ref|YP_003084065.1| peptide deformylase [Neisseria meningitidis alpha14]
gi|385323261|ref|YP_005877700.1| peptide deformylase (PDF; polypeptide deformylase) [Neisseria
meningitidis 8013]
gi|385327476|ref|YP_005881779.1| polypeptide deformylase [Neisseria meningitidis alpha710]
gi|385338993|ref|YP_005892866.1| peptide deformylase (PDF; polypeptide deformylase) [Neisseria
meningitidis WUE 2594]
gi|385339155|ref|YP_005893027.1| peptide deformylase [Neisseria meningitidis G2136]
gi|385342849|ref|YP_005896720.1| peptide deformylase [Neisseria meningitidis M01-240149]
gi|385850380|ref|YP_005896895.1| peptide deformylase [Neisseria meningitidis M04-240196]
gi|385852320|ref|YP_005898834.1| peptide deformylase [Neisseria meningitidis H44/76]
gi|385854288|ref|YP_005900801.1| peptide deformylase [Neisseria meningitidis M01-240355]
gi|385856258|ref|YP_005902770.1| peptide deformylase [Neisseria meningitidis NZ-05/33]
gi|416159203|ref|ZP_11605679.1| peptide deformylase [Neisseria meningitidis N1568]
gi|416167583|ref|ZP_11607681.1| peptide deformylase [Neisseria meningitidis OX99.30304]
gi|416176242|ref|ZP_11609543.1| peptide deformylase [Neisseria meningitidis M6190]
gi|416181154|ref|ZP_11611509.1| peptide deformylase [Neisseria meningitidis M13399]
gi|416186057|ref|ZP_11613506.1| peptide deformylase [Neisseria meningitidis M0579]
gi|416190858|ref|ZP_11615969.1| peptide deformylase [Neisseria meningitidis ES14902]
gi|416194640|ref|ZP_11617410.1| peptide deformylase [Neisseria meningitidis CU385]
gi|416199747|ref|ZP_11619456.1| peptide deformylase [Neisseria meningitidis 961-5945]
gi|416211454|ref|ZP_11621380.1| peptide deformylase [Neisseria meningitidis M01-240013]
gi|418287327|ref|ZP_12899940.1| peptide deformylase [Neisseria meningitidis NM233]
gi|418289567|ref|ZP_12901836.1| peptide deformylase [Neisseria meningitidis NM220]
gi|421537899|ref|ZP_15984081.1| peptide deformylase [Neisseria meningitidis 93003]
gi|421539307|ref|ZP_15985469.1| peptide deformylase [Neisseria meningitidis 93004]
gi|421541455|ref|ZP_15987572.1| peptide deformylase [Neisseria meningitidis NM255]
gi|421543512|ref|ZP_15989603.1| peptide deformylase [Neisseria meningitidis NM140]
gi|421545572|ref|ZP_15991632.1| peptide deformylase [Neisseria meningitidis NM183]
gi|421547641|ref|ZP_15993673.1| peptide deformylase [Neisseria meningitidis NM2781]
gi|421549669|ref|ZP_15995679.1| peptide deformylase [Neisseria meningitidis 69166]
gi|421551848|ref|ZP_15997830.1| peptide deformylase [Neisseria meningitidis NM576]
gi|421553859|ref|ZP_15999811.1| peptide deformylase [Neisseria meningitidis 98008]
gi|421556096|ref|ZP_16002013.1| peptide deformylase [Neisseria meningitidis 80179]
gi|421558227|ref|ZP_16004111.1| peptide deformylase [Neisseria meningitidis 92045]
gi|421560262|ref|ZP_16006121.1| peptide deformylase [Neisseria meningitidis NM2657]
gi|421562337|ref|ZP_16008164.1| peptide deformylase [Neisseria meningitidis NM2795]
gi|421564486|ref|ZP_16010285.1| peptide deformylase [Neisseria meningitidis NM3081]
gi|421566582|ref|ZP_16012325.1| peptide deformylase [Neisseria meningitidis NM3001]
gi|421907682|ref|ZP_16337557.1| polypeptide deformylase [Neisseria meningitidis alpha704]
gi|433464104|ref|ZP_20421598.1| peptide deformylase [Neisseria meningitidis NM422]
gi|433466227|ref|ZP_20423690.1| peptide deformylase [Neisseria meningitidis 87255]
gi|433468308|ref|ZP_20425746.1| peptide deformylase [Neisseria meningitidis 98080]
gi|433470444|ref|ZP_20427844.1| peptide deformylase [Neisseria meningitidis 68094]
gi|433472491|ref|ZP_20429861.1| peptide deformylase [Neisseria meningitidis 97021]
gi|433474584|ref|ZP_20431932.1| peptide deformylase [Neisseria meningitidis 88050]
gi|433476687|ref|ZP_20434015.1| peptide deformylase [Neisseria meningitidis 70012]
gi|433478834|ref|ZP_20436133.1| peptide deformylase [Neisseria meningitidis 63041]
gi|433480915|ref|ZP_20438187.1| peptide deformylase [Neisseria meningitidis 2006087]
gi|433483039|ref|ZP_20440279.1| peptide deformylase [Neisseria meningitidis 2002038]
gi|433485137|ref|ZP_20442344.1| peptide deformylase [Neisseria meningitidis 97014]
gi|433487308|ref|ZP_20444487.1| peptide deformylase [Neisseria meningitidis M13255]
gi|433489482|ref|ZP_20446621.1| peptide deformylase [Neisseria meningitidis NM418]
gi|433491583|ref|ZP_20448686.1| peptide deformylase [Neisseria meningitidis NM586]
gi|433493705|ref|ZP_20450781.1| peptide deformylase [Neisseria meningitidis NM762]
gi|433495821|ref|ZP_20452870.1| peptide deformylase [Neisseria meningitidis M7089]
gi|433497821|ref|ZP_20454838.1| peptide deformylase [Neisseria meningitidis M7124]
gi|433499893|ref|ZP_20456886.1| peptide deformylase [Neisseria meningitidis NM174]
gi|433501987|ref|ZP_20458960.1| peptide deformylase [Neisseria meningitidis NM126]
gi|433504106|ref|ZP_20461051.1| peptide deformylase [Neisseria meningitidis 9506]
gi|433508452|ref|ZP_20465338.1| peptide deformylase [Neisseria meningitidis 12888]
gi|433510378|ref|ZP_20467222.1| peptide deformylase [Neisseria meningitidis 4119]
gi|433512468|ref|ZP_20469270.1| peptide deformylase [Neisseria meningitidis 63049]
gi|433514579|ref|ZP_20471355.1| peptide deformylase [Neisseria meningitidis 2004090]
gi|433516695|ref|ZP_20473449.1| peptide deformylase [Neisseria meningitidis 96023]
gi|433518888|ref|ZP_20475615.1| peptide deformylase [Neisseria meningitidis 65014]
gi|433520897|ref|ZP_20477599.1| peptide deformylase [Neisseria meningitidis 61103]
gi|433523044|ref|ZP_20479717.1| peptide deformylase [Neisseria meningitidis 97020]
gi|433525160|ref|ZP_20481806.1| peptide deformylase [Neisseria meningitidis 69096]
gi|433527272|ref|ZP_20483885.1| peptide deformylase [Neisseria meningitidis NM3652]
gi|433529363|ref|ZP_20485963.1| peptide deformylase [Neisseria meningitidis NM3642]
gi|433531485|ref|ZP_20488054.1| peptide deformylase [Neisseria meningitidis 2007056]
gi|433533699|ref|ZP_20490248.1| peptide deformylase [Neisseria meningitidis 2001212]
gi|433535710|ref|ZP_20492230.1| peptide deformylase [Neisseria meningitidis 77221]
gi|433537870|ref|ZP_20494357.1| peptide deformylase [Neisseria meningitidis 70030]
gi|433540043|ref|ZP_20496500.1| peptide deformylase [Neisseria meningitidis 63006]
gi|54036954|sp|P63916.1|DEF_NEIMB RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|54040742|sp|P63915.1|DEF_NEIMA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|158512959|sp|A1KRE5.1|DEF_NEIMF RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|189083074|sp|A9M464.1|DEF_NEIM0 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|7225325|gb|AAF40569.1| peptide deformylase [Neisseria meningitidis MC58]
gi|120865694|emb|CAM09421.1| polypeptide deformylase [Neisseria meningitidis FAM18]
gi|121051210|emb|CAM07481.1| polypeptide deformylase [Neisseria meningitidis Z2491]
gi|161596498|gb|ABX74158.1| polypeptide deformylase [Neisseria meningitidis 053442]
gi|254669386|emb|CBA08535.1| peptide deformylase [Neisseria meningitidis alpha14]
gi|254671149|emb|CBA08206.1| polypeptide deformylase [Neisseria meningitidis alpha153]
gi|254672814|emb|CBA06953.1| polypeptide deformylase [Neisseria meningitidis alpha275]
gi|261391648|emb|CAX49096.1| peptide deformylase (PDF; polypeptide deformylase) [Neisseria
meningitidis 8013]
gi|308388328|gb|ADO30648.1| polypeptide deformylase [Neisseria meningitidis alpha710]
gi|319411407|emb|CBY91818.1| peptide deformylase (PDF; polypeptide deformylase) [Neisseria
meningitidis WUE 2594]
gi|325129146|gb|EGC51994.1| peptide deformylase [Neisseria meningitidis N1568]
gi|325131145|gb|EGC53866.1| peptide deformylase [Neisseria meningitidis OX99.30304]
gi|325133177|gb|EGC55848.1| peptide deformylase [Neisseria meningitidis M6190]
gi|325135219|gb|EGC57844.1| peptide deformylase [Neisseria meningitidis M13399]
gi|325137169|gb|EGC59764.1| peptide deformylase [Neisseria meningitidis M0579]
gi|325138789|gb|EGC61341.1| peptide deformylase [Neisseria meningitidis ES14902]
gi|325141255|gb|EGC63754.1| peptide deformylase [Neisseria meningitidis CU385]
gi|325143271|gb|EGC65609.1| peptide deformylase [Neisseria meningitidis 961-5945]
gi|325145432|gb|EGC67708.1| peptide deformylase [Neisseria meningitidis M01-240013]
gi|325197399|gb|ADY92855.1| peptide deformylase [Neisseria meningitidis G2136]
gi|325199324|gb|ADY94779.1| peptide deformylase [Neisseria meningitidis H44/76]
gi|325203055|gb|ADY98509.1| peptide deformylase [Neisseria meningitidis M01-240149]
gi|325203229|gb|ADY98682.1| peptide deformylase [Neisseria meningitidis M01-240355]
gi|325205203|gb|ADZ00656.1| peptide deformylase [Neisseria meningitidis M04-240196]
gi|325207147|gb|ADZ02599.1| peptide deformylase [Neisseria meningitidis NZ-05/33]
gi|372203322|gb|EHP17021.1| peptide deformylase [Neisseria meningitidis NM220]
gi|372203898|gb|EHP17495.1| peptide deformylase [Neisseria meningitidis NM233]
gi|389604730|emb|CCA43656.1| peptide deformylase [Neisseria meningitidis alpha522]
gi|393291351|emb|CCI73556.1| polypeptide deformylase [Neisseria meningitidis alpha704]
gi|402317936|gb|EJU53463.1| peptide deformylase [Neisseria meningitidis 93003]
gi|402319824|gb|EJU55328.1| peptide deformylase [Neisseria meningitidis NM255]
gi|402321887|gb|EJU57358.1| peptide deformylase [Neisseria meningitidis 93004]
gi|402325800|gb|EJU61207.1| peptide deformylase [Neisseria meningitidis NM183]
gi|402326354|gb|EJU61756.1| peptide deformylase [Neisseria meningitidis NM140]
gi|402327661|gb|EJU63048.1| peptide deformylase [Neisseria meningitidis NM2781]
gi|402331620|gb|EJU66952.1| peptide deformylase [Neisseria meningitidis 69166]
gi|402333116|gb|EJU68431.1| peptide deformylase [Neisseria meningitidis NM576]
gi|402334217|gb|EJU69509.1| peptide deformylase [Neisseria meningitidis 98008]
gi|402337949|gb|EJU73188.1| peptide deformylase [Neisseria meningitidis 80179]
gi|402338621|gb|EJU73852.1| peptide deformylase [Neisseria meningitidis 92045]
gi|402340435|gb|EJU75635.1| peptide deformylase [Neisseria meningitidis NM2657]
gi|402342993|gb|EJU78148.1| peptide deformylase [Neisseria meningitidis NM2795]
gi|402345006|gb|EJU80133.1| peptide deformylase [Neisseria meningitidis NM3001]
gi|402346083|gb|EJU81187.1| peptide deformylase [Neisseria meningitidis NM3081]
gi|432205015|gb|ELK61046.1| peptide deformylase [Neisseria meningitidis 87255]
gi|432205914|gb|ELK61929.1| peptide deformylase [Neisseria meningitidis NM422]
gi|432206644|gb|ELK62648.1| peptide deformylase [Neisseria meningitidis 98080]
gi|432211877|gb|ELK67821.1| peptide deformylase [Neisseria meningitidis 68094]
gi|432212375|gb|ELK68313.1| peptide deformylase [Neisseria meningitidis 97021]
gi|432212644|gb|ELK68579.1| peptide deformylase [Neisseria meningitidis 88050]
gi|432217840|gb|ELK73705.1| peptide deformylase [Neisseria meningitidis 70012]
gi|432218808|gb|ELK74660.1| peptide deformylase [Neisseria meningitidis 63041]
gi|432219268|gb|ELK75115.1| peptide deformylase [Neisseria meningitidis 2006087]
gi|432223869|gb|ELK79644.1| peptide deformylase [Neisseria meningitidis 2002038]
gi|432224980|gb|ELK80740.1| peptide deformylase [Neisseria meningitidis 97014]
gi|432226073|gb|ELK81806.1| peptide deformylase [Neisseria meningitidis M13255]
gi|432230478|gb|ELK86153.1| peptide deformylase [Neisseria meningitidis NM418]
gi|432231268|gb|ELK86935.1| peptide deformylase [Neisseria meningitidis NM586]
gi|432231883|gb|ELK87538.1| peptide deformylase [Neisseria meningitidis NM762]
gi|432237004|gb|ELK92604.1| peptide deformylase [Neisseria meningitidis M7124]
gi|432237463|gb|ELK93056.1| peptide deformylase [Neisseria meningitidis M7089]
gi|432237961|gb|ELK93546.1| peptide deformylase [Neisseria meningitidis NM174]
gi|432243489|gb|ELK99000.1| peptide deformylase [Neisseria meningitidis 9506]
gi|432243742|gb|ELK99248.1| peptide deformylase [Neisseria meningitidis NM126]
gi|432250103|gb|ELL05501.1| peptide deformylase [Neisseria meningitidis 12888]
gi|432250223|gb|ELL05618.1| peptide deformylase [Neisseria meningitidis 63049]
gi|432250656|gb|ELL06046.1| peptide deformylase [Neisseria meningitidis 4119]
gi|432256243|gb|ELL11566.1| peptide deformylase [Neisseria meningitidis 2004090]
gi|432256487|gb|ELL11809.1| peptide deformylase [Neisseria meningitidis 96023]
gi|432256853|gb|ELL12164.1| peptide deformylase [Neisseria meningitidis 65014]
gi|432262681|gb|ELL17916.1| peptide deformylase [Neisseria meningitidis 61103]
gi|432262917|gb|ELL18148.1| peptide deformylase [Neisseria meningitidis 97020]
gi|432263308|gb|ELL18528.1| peptide deformylase [Neisseria meningitidis 69096]
gi|432267341|gb|ELL22519.1| peptide deformylase [Neisseria meningitidis NM3652]
gi|432269505|gb|ELL24662.1| peptide deformylase [Neisseria meningitidis 2007056]
gi|432270014|gb|ELL25161.1| peptide deformylase [Neisseria meningitidis NM3642]
gi|432274252|gb|ELL29345.1| peptide deformylase [Neisseria meningitidis 2001212]
gi|432276010|gb|ELL31072.1| peptide deformylase [Neisseria meningitidis 70030]
gi|432276721|gb|ELL31776.1| peptide deformylase [Neisseria meningitidis 77221]
gi|432278024|gb|ELL33068.1| peptide deformylase [Neisseria meningitidis 63006]
Length = 167
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 3/117 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY++ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 35 MFETMYESRGIGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIVEKDGET-TYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ V R E VK++A + G +F++ L A QHE DHL GI+F ER++
Sbjct: 92 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVERLS 148
>gi|145220094|ref|YP_001130803.1| peptide deformylase [Chlorobium phaeovibrioides DSM 265]
gi|189083076|sp|A4SFP2.1|DEF_PROVI RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|145206258|gb|ABP37301.1| peptide deformylase [Chlorobium phaeovibrioides DSM 265]
Length = 190
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 76/131 (58%), Gaps = 3/131 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG--EGEEIVLVNPRVNKYSNKMIPYEE 58
MF+ M GIGL+APQVG +++L+V + + + +V++NP + K + EE
Sbjct: 34 MFESMENASGIGLAAPQVGHSLRLLVLDISCMKSYEDVAPMVVINPHILSVKGKNL-MEE 92
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
GCLS PG+ DV+RP S+ + RD N + S + ARV QHE DHL G LF +RM
Sbjct: 93 GCLSVPGVQGDVQRPSSITLKYRDRNFLEQTEEFSGMLARVLQHEIDHLSGTLFIDRMEK 152
Query: 119 DVLDSIREQLE 129
I+++L+
Sbjct: 153 RDRRKIQKELD 163
>gi|302341791|ref|YP_003806320.1| peptide deformylase [Desulfarculus baarsii DSM 2075]
gi|301638404|gb|ADK83726.1| peptide deformylase [Desulfarculus baarsii DSM 2075]
Length = 170
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY G+GL+APQVG ++++V + + G +VL+NPRV +++ ++E C
Sbjct: 35 MIDTMYDAPGVGLAAPQVGRAIRMVVVDTAEDDKRGTPMVLINPRVVAKRGQLV-WDEAC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P ADV R V ++A D+ G + L A QHE DHL G+LF + ++
Sbjct: 94 LSVPDYRADVVRASEVVVEAGDLEGNDLRIEAEGLTAVCLQHEIDHLDGVLFLDHIS 150
>gi|22219294|pdb|1LRY|A Chain A, Crystal Structure Of P. Aeruginosa Peptide Deformylase
Complexed With Antibiotic Actinonin
Length = 167
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + ++ E V +NP + M Y+EGC
Sbjct: 34 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPR--VFINPEFEPLTEDMDQYQEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V+I A D +G F L A QHE DHL G LF + ++
Sbjct: 92 LSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLK 151
Query: 121 LDSIREQLE 129
D IR++LE
Sbjct: 152 RDRIRKKLE 160
>gi|50083493|ref|YP_045003.1| peptide deformylase [Acinetobacter sp. ADP1]
gi|49529469|emb|CAG67181.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
binds Zn(II)) [Acinetobacter sp. ADP1]
Length = 174
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+A QV ++QL+V + E+ + +V +NP++ + + PYEEGC
Sbjct: 35 MLETMYEAPGIGLAATQVDRHIQLIVMDLSEEKDQP--MVFINPKITPLTEETQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ V R VKI+A ++N F + L A QHE DHL G LF + ++
Sbjct: 93 LSVPQIYDKVNRTSRVKIEAINLNDEAFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLK 152
Query: 121 LDSIREQLE 129
RE++E
Sbjct: 153 RQRAREKVE 161
>gi|442804802|ref|YP_007372951.1| peptide deformylase Def [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740652|gb|AGC68341.1| peptide deformylase Def [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 155
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 72/116 (62%), Gaps = 5/116 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY +G+GL+APQVG+ ++ V + GEG IVL+NP + S + + EGC
Sbjct: 35 MLDTMYDANGVGLAAPQVGVLKRICVIDV----GEGP-IVLINPEKIEESAEQVVDIEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LS PG++ +V+RPE V + A + G F++ + L AR HE DHL GILF +++
Sbjct: 90 LSIPGVYGEVKRPERVVVKALNRKGESFTIEGTGLLARALCHEMDHLDGILFEDKV 145
>gi|398338942|ref|ZP_10523645.1| peptide deformylase [Leptospira kirschneri serovar Bim str. 1051]
Length = 178
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 75/134 (55%), Gaps = 5/134 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGE----EIVLVNPRVNKYSNKMIP 55
MFD M +G+GL+APQ+GI Q++V ER G E +++NP + +
Sbjct: 38 MFDTMRHAEGVGLAAPQIGILKQVVVVGSEDNERYPGTPDVPERIILNPIITPLTKDTSG 97
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+ EGCLS PG+ VERP +++ D G +F ++ A V+QHE DHLQGIL+ +R
Sbjct: 98 FWEGCLSVPGMRGYVERPNRIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDR 157
Query: 116 MTDDVLDSIREQLE 129
+ D L E L+
Sbjct: 158 LKDTKLFGFNETLD 171
>gi|346991574|ref|ZP_08859646.1| peptide deformylase [Ruegeria sp. TW15]
Length = 172
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 73/129 (56%), Gaps = 6/129 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+G+ +L+V + V E GE +V+ NP V S++ YEEG
Sbjct: 34 MLETMYDAPGIGLAAPQIGVLDRLIVVDCVKEEGEAPRPLVMFNPEVIASSDETNVYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +A+V RP++V + D +G + DL A QHE DHL G LF D
Sbjct: 94 CLSIPEQYAEVTRPKTVDVTWLDRDGNLQQETFDDLWATCVQHEIDHLNGKLFI-----D 148
Query: 120 VLDSIREQL 128
L ++ Q+
Sbjct: 149 YLKPLKRQM 157
>gi|120552986|ref|YP_957337.1| peptide deformylase [Marinobacter aquaeolei VT8]
gi|120322835|gb|ABM17150.1| peptide deformylase [Marinobacter aquaeolei VT8]
Length = 167
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ Q++V + ++ E V +NP+V ++ +EGC
Sbjct: 34 MFETMYDARGIGLAATQVDVHKQIIVMDLSEDKTEPR--VFINPKVEVLDGELEAMQEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + DV+R E +I A+D +G F + L A QHE DHL G LF + ++
Sbjct: 92 LSVPGFYEDVKRIEHCRITAKDRDGKEFVLEAEGLLAVCIQHEMDHLNGKLFVDYLSQLK 151
Query: 121 LDSIREQLE 129
+ IR++LE
Sbjct: 152 RNRIRKKLE 160
>gi|49081366|gb|AAT50122.1| PA0019, partial [synthetic construct]
Length = 169
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + ++ E V +NP + M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPR--VFINPEFEPLTEDMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V+I A D +G F L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D IR++LE
Sbjct: 153 RDRIRKKLE 161
>gi|228992595|ref|ZP_04152522.1| Peptide deformylase [Bacillus pseudomycoides DSM 12442]
gi|228998643|ref|ZP_04158230.1| Peptide deformylase [Bacillus mycoides Rock3-17]
gi|229006144|ref|ZP_04163831.1| Peptide deformylase [Bacillus mycoides Rock1-4]
gi|228755097|gb|EEM04455.1| Peptide deformylase [Bacillus mycoides Rock1-4]
gi|228761111|gb|EEM10070.1| Peptide deformylase [Bacillus mycoides Rock3-17]
gi|228767229|gb|EEM15865.1| Peptide deformylase [Bacillus pseudomycoides DSM 12442]
Length = 158
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 74/118 (62%), Gaps = 6/118 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + M DG+GL+APQVG+++Q+ V + + G+ I L+NP + K ++ P EG
Sbjct: 35 MHETMLVADGVGLAAPQVGVSLQVAVVDIGDDTGK---IELINPVILEKRGEQVGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLSFPG++ +VER E +K+ A++ G F + D AR QHE DHL G+LF ++T
Sbjct: 90 CLSFPGLYGEVERAEYIKVRAQNRRGKIFLLEADDFLARAIQHEIDHLHGVLFTSKVT 147
>gi|219847779|ref|YP_002462212.1| peptide deformylase [Chloroflexus aggregans DSM 9485]
gi|254767576|sp|B8G5R5.1|DEF_CHLAD RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|219542038|gb|ACL23776.1| peptide deformylase [Chloroflexus aggregans DSM 9485]
Length = 188
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 78/138 (56%), Gaps = 14/138 (10%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVF--------NPVG---ERGEGEEIVLVNPRVNKY 49
MF+ M+ +G+GL+APQ+GI +QL + P G E E VL+NPR+ K
Sbjct: 39 MFETMHAANGVGLAAPQIGIPIQLCIIEIPPEYEEQPDGSLIEVNPAEPYVLINPRIVKT 98
Query: 50 SNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSD-LPARVFQHEFDHLQ 108
S + I +EGCLS PG + V R V ++ +D++G + +D L QHE DHL
Sbjct: 99 SGEEIMRDEGCLSLPGWYGMVPRQTWVTVEFQDLSGKHHRLRRADGLLGWAIQHEVDHLH 158
Query: 109 GILFFERMTDDVLDSIRE 126
GILF ER+ D L ++R+
Sbjct: 159 GILFTERIRD--LSTLRD 174
>gi|34809567|pdb|1IX1|A Chain A, Crystal Structure Of P.Aeruginosa Peptide Deformylase
Complexed With Antibiotic Actinonin
gi|34809568|pdb|1IX1|B Chain B, Crystal Structure Of P.Aeruginosa Peptide Deformylase
Complexed With Antibiotic Actinonin
Length = 171
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + ++ E V +NP + M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPR--VFINPEFEPLTEDMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V+I A D +G F L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D IR++LE
Sbjct: 153 RDRIRKKLE 161
>gi|254501503|ref|ZP_05113654.1| peptide deformylase [Labrenzia alexandrii DFL-11]
gi|222437574|gb|EEE44253.1| peptide deformylase [Labrenzia alexandrii DFL-11]
Length = 189
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 64/117 (54%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QVGI ++ V + E E +V +NP + Y +++ Y+EGC
Sbjct: 52 MLETMYDAPGIGLAASQVGILKRIFVLDVAKEDAPKEPMVFINPEIIWYGDELSVYQEGC 111
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P + DVERP V + D GA + L A QHE DHL G LF + ++
Sbjct: 112 LSIPDYYEDVERPAEVAVKFMDREGAEQEIKADGLLATCIQHELDHLNGKLFIDYLS 168
>gi|407799665|ref|ZP_11146543.1| Peptide deformylase [Oceaniovalibus guishaninsula JLT2003]
gi|407058142|gb|EKE44100.1| Peptide deformylase [Oceaniovalibus guishaninsula JLT2003]
Length = 209
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQVG N +L+V + + ++ +VL+NP + S++ YEEG
Sbjct: 68 MLETMYDAPGIGLAAPQVGSNARLLVMDCIKDKDAAPRPMVLLNPAIEWTSDEDSTYEEG 127
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLS P ADV RP V + ++G + S L A QHE DHL G LF + +T
Sbjct: 128 CLSIPDQFADVTRPAEVDVSWMGLDGQQHRERFSGLWATCVQHEIDHLNGRLFIDYLT 185
>gi|393766411|ref|ZP_10354967.1| peptide deformylase [Methylobacterium sp. GXF4]
gi|392728192|gb|EIZ85501.1| peptide deformylase [Methylobacterium sp. GXF4]
Length = 171
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 68/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY G+GL+A QVG+ +++ + E G E V ++P + S + Y+EGC
Sbjct: 35 MFETMYDAPGVGLAAIQVGVAKRVVTIDTSKEEGVREPRVFIDPEIVWSSEEKRLYDEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP+ V++ RDI G + L A QHE DHL G+LF + ++
Sbjct: 95 LSIPEYYAEVERPDRVRVKFRDIEGREQEIEADGLLATCIQHEIDHLNGVLFIDHIS 151
>gi|387891272|ref|YP_006321569.1| peptide deformylase [Pseudomonas fluorescens A506]
gi|423689107|ref|ZP_17663627.1| peptide deformylase [Pseudomonas fluorescens SS101]
gi|387159897|gb|AFJ55096.1| peptide deformylase [Pseudomonas fluorescens A506]
gi|387999206|gb|EIK60535.1| peptide deformylase [Pseudomonas fluorescens SS101]
Length = 168
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++++++V + +R E V +NP + +M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHLRVVVMDLSEDRSEPR--VYINPEFEPLTEEMGEYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + +VERP VKI A D +G F + L A QHE DHL G LF + ++
Sbjct: 93 LSVPEFYENVERPLRVKIKALDRDGKPFELIAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|384449749|ref|YP_005662351.1| peptide deformylase [Chlamydophila pneumoniae LPCoLN]
gi|269302867|gb|ACZ32967.1| peptide deformylase [Chlamydophila pneumoniae LPCoLN]
Length = 186
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 70/124 (56%), Gaps = 6/124 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M D M G+GL+APQVG NV L V E +GE I V +NP ++ S +I
Sbjct: 34 MCDTMEAHRGVGLAAPQVGKNVSLFVMCVDRETEDGELIFSESPRVFINPVLSDPSETLI 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
+EGCLS PG+ +V RP+ + + A D+NG F+ L AR+ HE DHL G+L+ +
Sbjct: 94 IGKEGCLSIPGLRGEVFRPQKITVTAMDLNGKIFTEHLEGFTARIIMHETDHLNGVLYID 153
Query: 115 RMTD 118
M +
Sbjct: 154 LMEE 157
>gi|209547667|ref|YP_002279584.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209533423|gb|ACI53358.1| peptide deformylase [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 171
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 68/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + K S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP V + D NG +V L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAVVSVKFLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDYIS 151
>gi|158422422|ref|YP_001523714.1| polypeptide or peptide deformylase family protein [Azorhizobium
caulinodans ORS 571]
gi|158329311|dbj|BAF86796.1| polypeptide or peptide deformylase family protein [Azorhizobium
caulinodans ORS 571]
Length = 172
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 66/117 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QVG++ +++ + E IVL+NP V S + Y EGC
Sbjct: 35 MLETMYDAPGIGLAAIQVGVHKRVITIDIAREDAPKNPIVLINPEVVSASEETSFYNEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P + +VERP V + +D+ GA ++ L A QHE DHL G+LF + ++
Sbjct: 95 LSIPEYYEEVERPAQVTVRYQDLKGATHEIAADGLLATCLQHEIDHLNGVLFIDHLS 151
>gi|328947001|ref|YP_004364338.1| peptide deformylase [Treponema succinifaciens DSM 2489]
gi|328447325|gb|AEB13041.1| Peptide deformylase [Treponema succinifaciens DSM 2489]
Length = 192
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ M DG+GL+APQVGI+ + V + V +NP + K S + YEEGC
Sbjct: 34 MFETMISADGVGLAAPQVGISKRFFVVIS----DDNVRRVFINPEIIKTSAENSEYEEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSD-LPARVFQHEFDHLQGILFFER 115
LS PG+ + RP + + A D NG RF + D L AR+ QHE DHL GIL+ +R
Sbjct: 90 LSLPGVSEKIVRPVKISVSAIDENGKRFVLDDVDGLLARIIQHENDHLNGILYIDR 145
>gi|332533677|ref|ZP_08409536.1| peptide deformylase [Pseudoalteromonas haloplanktis ANT/505]
gi|332036841|gb|EGI73302.1| peptide deformylase [Pseudoalteromonas haloplanktis ANT/505]
Length = 168
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+A QV I+ +++V + ER E +VL+NP++ K + EEGC
Sbjct: 35 MLETMYDENGIGLAATQVDIHQRIVVIDVSEERNEP--LVLINPQIIKKDGSTVS-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P +A V+R E+V + A + NG F + +L A QHE DHLQG LF + ++
Sbjct: 92 LSVPNSYAKVDRAETVTVAALNENGEEFVLDADELLAICIQHELDHLQGKLFIDYLSPLK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RQRIRKKLE 160
>gi|421109095|ref|ZP_15569620.1| peptide deformylase [Leptospira kirschneri str. H2]
gi|410005779|gb|EKO59565.1| peptide deformylase [Leptospira kirschneri str. H2]
Length = 170
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 75/134 (55%), Gaps = 5/134 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGE----EIVLVNPRVNKYSNKMIP 55
MFD M +G+GL+APQ+GI Q++V ER G E +++NP + +
Sbjct: 30 MFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERIVLNPIITPLTKDTSG 89
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+ EGCLS PG+ VERP +++ D G +F ++ A V+QHE DHLQGIL+ +R
Sbjct: 90 FWEGCLSVPGMRGYVERPNRIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDR 149
Query: 116 MTDDVLDSIREQLE 129
+ D L E L+
Sbjct: 150 LKDTKLFGFNETLD 163
>gi|374292333|ref|YP_005039368.1| Formylmethionine deformylase [Azospirillum lipoferum 4B]
gi|357424272|emb|CBS87139.1| Formylmethionine deformylase [Azospirillum lipoferum 4B]
Length = 183
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 69/121 (57%), Gaps = 3/121 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI---VLVNPRVNKYSNKMIPYE 57
M M G+GL+APQ+ + +++VF +RGEGEE+ VLVNP + S+ +
Sbjct: 36 MIATMLDAPGVGLAAPQISESRRIIVFRVPADRGEGEEVANTVLVNPVIEPLSDDKVLGW 95
Query: 58 EGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
EGCLS PG+ V R ++ ++GAR S ARV QHE DHL G+L+ +RM
Sbjct: 96 EGCLSIPGLRGLVPRYGRIRYRGYGLDGARIEREASGFHARVVQHEVDHLDGVLYLDRMD 155
Query: 118 D 118
D
Sbjct: 156 D 156
>gi|421097432|ref|ZP_15558120.1| peptide deformylase [Leptospira borgpetersenii str. 200901122]
gi|410799555|gb|EKS01627.1| peptide deformylase [Leptospira borgpetersenii str. 200901122]
Length = 170
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 78/141 (55%), Gaps = 12/141 (8%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVF-NPVGERGEGE----EIVLVNPRVNKYSNKMIP 55
MFD M +G+GL+APQ+GI Q++V + ER G E V++NP + +
Sbjct: 30 MFDTMRHAEGVGLAAPQIGILKQIVVVGSEENERYPGTPDVPERVILNPVITPLTKDTSG 89
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+ EGCLS PG+ VERP +++ D G +F ++ A V+QHE DHL GIL+ +R
Sbjct: 90 FWEGCLSVPGMRGYVERPNKIRMQWMDEKGNQFDETIDGYKAVVYQHECDHLSGILYVDR 149
Query: 116 MTD-------DVLDSIREQLE 129
+ D D LDS R L+
Sbjct: 150 LKDTKLFGFNDTLDSGRNVLD 170
>gi|422110718|ref|ZP_16380632.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378546|emb|CBX22818.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 167
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 72/117 (61%), Gaps = 3/117 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 35 MFETMYEARGIGLAATQVDVHERIVVMDLTEDRSEPR--VFINPVIVEKDGET-TYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ V R E VK++A + G +F++ L A QHE DHL GI+F ER++
Sbjct: 92 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVERLS 148
>gi|288575787|ref|ZP_05977581.2| peptide deformylase [Neisseria mucosa ATCC 25996]
gi|288566988|gb|EFC88548.1| peptide deformylase [Neisseria mucosa ATCC 25996]
Length = 193
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V VNP + + + YEEGC
Sbjct: 61 MFETMYEARGIGLAATQVDVHERVVVMDLTEDRSEPR--VFVNPVIVEKDGE-TTYEEGC 117
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+ V R E VK++A + G +F++ L A QHE DHL GI+F ER++
Sbjct: 118 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVERLSQLK 177
Query: 121 LDSIREQLE 129
I+ +L+
Sbjct: 178 QGRIKTKLK 186
>gi|386811558|ref|ZP_10098783.1| peptide deformylase [planctomycete KSU-1]
gi|386403828|dbj|GAB61664.1| peptide deformylase [planctomycete KSU-1]
Length = 170
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 78/129 (60%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M ++M + +G+GL+APQVG +V+L + + R E + V +NP + + + ++ EEGC
Sbjct: 32 MMELMCQANGVGLAAPQVGWSVRLFIIDVNDSRCEDK--VFINPTIIEETGEL-SKEEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI + V R + +K A ++ G + + L AR +QHE DHL G LF ++++
Sbjct: 89 LSLPGIMSKVIRAQRIKARAYNLKGQKIEIEAEGLAARAWQHEIDHLNGCLFIDKISPAN 148
Query: 121 LDSIREQLE 129
SI +QL+
Sbjct: 149 HLSISQQLK 157
>gi|315646177|ref|ZP_07899297.1| peptide deformylase [Paenibacillus vortex V453]
gi|315278376|gb|EFU41692.1| peptide deformylase [Paenibacillus vortex V453]
Length = 164
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY DG+GL+APQVGI +L+V + E G I ++NP + + + EGC
Sbjct: 35 MADTMYDADGVGLAAPQVGILKRLIVIDAGDEHGL---IKMINPEIVESEGEQFG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + DV R E V + D G V+ + L AR FQHE DHL G+LF E + D V
Sbjct: 91 LSIPGWNGDVRRAEKVTVKGLDREGNELIVTGTGLLARAFQHEIDHLNGVLFTE-IADRV 149
Query: 121 LDSIREQ 127
+ + EQ
Sbjct: 150 YEYVPEQ 156
>gi|298370618|ref|ZP_06981933.1| peptide deformylase [Neisseria sp. oral taxon 014 str. F0314]
gi|298281228|gb|EFI22718.1| peptide deformylase [Neisseria sp. oral taxon 014 str. F0314]
Length = 167
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 35 MFETMYEARGIGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIVEKDGET-TYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+ V R E VK++A + G +F++ L A QHE DHL GI+F ER++
Sbjct: 92 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVERLSQLK 151
Query: 121 LDSIREQLE 129
I+ +L+
Sbjct: 152 QGRIKTKLK 160
>gi|409435828|ref|ZP_11263036.1| peptide deformylase [Rhizobium mesoamericanum STM3625]
gi|408752586|emb|CCM74183.1| peptide deformylase [Rhizobium mesoamericanum STM3625]
Length = 172
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 69/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + +V VNP + S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPLVFVNPEIVVSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP +V + D +G +V L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPATVTVKYLDRDGKEQTVEADGLLATCLQHEIDHLNGVLFIDHIS 151
>gi|441502600|ref|ZP_20984610.1| Peptide deformylase [Photobacterium sp. AK15]
gi|441429778|gb|ELR67230.1| Peptide deformylase [Photobacterium sp. AK15]
Length = 167
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 71/118 (60%), Gaps = 4/118 (3%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
M D MY TD GIGL+APQVG + ++V + ER + ++L+NP + N + +EG
Sbjct: 34 MLDTMYHTDNGIGLAAPQVGRSEAIVVIDISPERND--PLILINPEIVSGENP-VSGQEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLS PG +ADVER E V I A D G +F + D A QHE DHL+G LF + ++
Sbjct: 91 CLSVPGYYADVERFEKVTISAMDREGNKFEIERDDFLAIAMQHEIDHLKGKLFIDYLS 148
>gi|397685166|ref|YP_006522485.1| peptide deformylase [Pseudomonas stutzeri DSM 10701]
gi|395806722|gb|AFN76127.1| peptide deformylase [Pseudomonas stutzeri DSM 10701]
Length = 168
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ +++V + ++ E V +NP +++M Y+EGC
Sbjct: 35 MFETMYDAPGIGLAATQVNVHRRVVVMDLSEDKSEPR--VFINPEFEFLTDEMDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP+ V++ A D +G F + L A QHE DHL G LF + +++
Sbjct: 93 LSVPGFYENVDRPQKVRVKALDRDGQPFELIAEGLLAVCIQHECDHLNGKLFVDYLSNLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|417844300|ref|ZP_12490345.1| Peptide deformylase [Haemophilus haemolyticus M21639]
gi|341956931|gb|EGT83346.1| Peptide deformylase [Haemophilus haemolyticus M21639]
Length = 169
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ GIGL+APQV I +++ + G++ +IVL+NP + S EEGC
Sbjct: 35 MFDTMYQEKGIGLAAPQVDILQRIITIDVEGDKQN--QIVLINPEI-LVSEGETGIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG A V R E VK+ A D +G F++ L A QHE DHL GILF + ++
Sbjct: 92 LSIPGFRALVPRKEKVKVRALDRDGKEFTLDADGLLAICIQHEIDHLNGILFVDYLSPLK 151
Query: 121 LDSIREQL 128
I+E+L
Sbjct: 152 RQRIKEKL 159
>gi|417839631|ref|ZP_12485804.1| Peptide deformylase [Haemophilus haemolyticus M19107]
gi|341951997|gb|EGT78540.1| Peptide deformylase [Haemophilus haemolyticus M19107]
Length = 169
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 75/128 (58%), Gaps = 3/128 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+APQV I +++ + G++ ++VL+NP + S EEGC
Sbjct: 35 MFDTMYQEEGIGLAAPQVDILQRIITIDVEGDKKN--QLVLINPEI-LASEGETGIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG A V R E VK+ A D +G F++ L A QHE DHL GILF + ++
Sbjct: 92 LSIPGFRALVPRKEKVKVRALDRDGKEFTLDADGLLAICIQHEIDHLNGILFVDYLSPLK 151
Query: 121 LDSIREQL 128
I+E+L
Sbjct: 152 RQRIKEKL 159
>gi|170749551|ref|YP_001755811.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831]
gi|170656073|gb|ACB25128.1| peptide deformylase [Methylobacterium radiotolerans JCM 2831]
Length = 171
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 69/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY G+GL+A Q+G+ +++ + E G + V +NP + S + Y+EGC
Sbjct: 35 MFETMYDAPGVGLAAIQIGVPKRVVTIDTSKEEGVRDARVFINPEIVWSSEEKRVYDEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP+ V++ RD++G + L + QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPDRVRVKFRDLDGTEREIEADGLLSTCIQHEIDHLNGVLFIDHLS 151
>gi|340363530|ref|ZP_08685860.1| peptide deformylase [Neisseria macacae ATCC 33926]
gi|339885675|gb|EGQ75382.1| peptide deformylase [Neisseria macacae ATCC 33926]
Length = 174
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 72/117 (61%), Gaps = 3/117 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 42 MFETMYEARGIGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIVEKDGE-TTYEEGC 98
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ V R E VK++A + G +F++ L A QHE DHL GI+F ER++
Sbjct: 99 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVERLS 155
>gi|302392197|ref|YP_003828017.1| peptide deformylase [Acetohalobium arabaticum DSM 5501]
gi|302204274|gb|ADL12952.1| peptide deformylase [Acetohalobium arabaticum DSM 5501]
Length = 145
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 71/116 (61%), Gaps = 6/116 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY G+GL+APQ+GI+ +++V + GEG + L+NP + + S I EEGC
Sbjct: 35 MQDTMYDASGVGLAAPQIGISKRVIVVDV----GEGP-LALINPEIVESSGSEID-EEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LS P + +VER V +DA D +G + L ARV QHE DHL+GILF +++
Sbjct: 89 LSIPNENGNVERAARVVVDALDSDGREVEIEAEGLLARVLQHEIDHLEGILFVDKV 144
>gi|194099884|ref|YP_002003021.1| peptide deformylase [Neisseria gonorrhoeae NCCP11945]
gi|291042744|ref|ZP_06568485.1| peptide deformylase [Neisseria gonorrhoeae DGI2]
gi|293398236|ref|ZP_06642441.1| polypeptide deformylase [Neisseria gonorrhoeae F62]
gi|385336803|ref|YP_005890750.1| peptide deformylase [Neisseria gonorrhoeae TCDC-NG08107]
gi|193935174|gb|ACF30998.1| peptide deformylase [Neisseria gonorrhoeae NCCP11945]
gi|291013178|gb|EFE05144.1| peptide deformylase [Neisseria gonorrhoeae DGI2]
gi|291611499|gb|EFF40569.1| polypeptide deformylase [Neisseria gonorrhoeae F62]
gi|317165346|gb|ADV08887.1| peptide deformylase [Neisseria gonorrhoeae TCDC-NG08107]
Length = 181
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 3/117 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY++ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 49 MFETMYESRGIGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIVEKDGE-TTYEEGC 105
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ V R E VK++A + G +F++ L A QHE DHL GI+F ER++
Sbjct: 106 LSVPGIYDAVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVERLS 162
>gi|407767854|ref|ZP_11115233.1| peptide deformylase 1 [Thalassospira xiamenensis M-5 = DSM 17429]
gi|407288567|gb|EKF14044.1| peptide deformylase 1 [Thalassospira xiamenensis M-5 = DSM 17429]
Length = 172
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 67/117 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+APQ+G+ +++V + ++ + + + LVNP + S Y+EGC
Sbjct: 35 MLETMYAAPGIGLAAPQIGVMKRVVVMDVSDDKEKPQPLKLVNPEIIWESEDTSVYQEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +ADVERP V + D NG + L A QHE DHL GILF + ++
Sbjct: 95 LSIPEQYADVERPAEVGLRYLDENGKEHEIEADGLLATCIQHELDHLDGILFTDYLS 151
>gi|163848638|ref|YP_001636682.1| peptide deformylase [Chloroflexus aurantiacus J-10-fl]
gi|222526574|ref|YP_002571045.1| peptide deformylase [Chloroflexus sp. Y-400-fl]
gi|254767575|sp|A9WHG7.1|DEF_CHLAA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|254767577|sp|B9LBS4.1|DEF_CHLSY RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|163669927|gb|ABY36293.1| peptide deformylase [Chloroflexus aurantiacus J-10-fl]
gi|222450453|gb|ACM54719.1| peptide deformylase [Chloroflexus sp. Y-400-fl]
Length = 188
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 77/138 (55%), Gaps = 14/138 (10%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE---RGEG--------EEIVLVNPRVNKY 49
MF+ M G+GL+APQ+GI +QL + E R +G E VL+NPR+ K
Sbjct: 39 MFETMRAAHGVGLAAPQIGIPIQLCIIEIPAEYEERADGSVVEVAPAEPYVLINPRIVKM 98
Query: 50 SNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLS-DLPARVFQHEFDHLQ 108
S + + +EGCLS PG + V R V ++ +D+NG + + DL QHE DHL
Sbjct: 99 SGEEVMRDEGCLSLPGWYGMVPRQTWVTVEFQDLNGKHHRLRRAGDLLGWAIQHEVDHLN 158
Query: 109 GILFFERMTDDVLDSIRE 126
GILF ER+ D L ++R+
Sbjct: 159 GILFTERIRD--LSTLRD 174
>gi|59802191|ref|YP_208903.1| peptide deformylase [Neisseria gonorrhoeae FA 1090]
gi|240015128|ref|ZP_04722041.1| peptide deformylase [Neisseria gonorrhoeae DGI18]
gi|240017578|ref|ZP_04724118.1| peptide deformylase [Neisseria gonorrhoeae FA6140]
gi|268593743|ref|ZP_06127910.1| peptide deformylase [Neisseria gonorrhoeae 35/02]
gi|268597818|ref|ZP_06131985.1| peptide deformylase [Neisseria gonorrhoeae FA19]
gi|268602403|ref|ZP_06136570.1| peptide deformylase [Neisseria gonorrhoeae PID18]
gi|268604665|ref|ZP_06138832.1| polypeptide deformylase [Neisseria gonorrhoeae PID1]
gi|268683123|ref|ZP_06149985.1| polypeptide deformylase [Neisseria gonorrhoeae PID332]
gi|268687550|ref|ZP_06154412.1| polypeptide deformylase [Neisseria gonorrhoeae SK-93-1035]
gi|75507292|sp|Q5F5P6.1|DEF_NEIG1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|59719086|gb|AAW90491.1| putative polypeptide deformylase [Neisseria gonorrhoeae FA 1090]
gi|268547132|gb|EEZ42550.1| peptide deformylase [Neisseria gonorrhoeae 35/02]
gi|268551606|gb|EEZ46625.1| peptide deformylase [Neisseria gonorrhoeae FA19]
gi|268586534|gb|EEZ51210.1| peptide deformylase [Neisseria gonorrhoeae PID18]
gi|268588796|gb|EEZ53472.1| polypeptide deformylase [Neisseria gonorrhoeae PID1]
gi|268623407|gb|EEZ55807.1| polypeptide deformylase [Neisseria gonorrhoeae PID332]
gi|268627834|gb|EEZ60234.1| polypeptide deformylase [Neisseria gonorrhoeae SK-93-1035]
Length = 167
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 3/117 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY++ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 35 MFETMYESRGIGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIVEKDGET-TYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ V R E VK++A + G +F++ L A QHE DHL GI+F ER++
Sbjct: 92 LSVPGIYDAVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVERLS 148
>gi|407772949|ref|ZP_11120251.1| peptide deformylase [Thalassospira profundimaris WP0211]
gi|407284902|gb|EKF10418.1| peptide deformylase [Thalassospira profundimaris WP0211]
Length = 172
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 68/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+APQ+G+ +++V + ++ + E + L+NP + S + Y+EGC
Sbjct: 35 MLETMYAAPGIGLAAPQIGVMKRVVVMDVSDDKDKPEPLKLINPEIIWESEETSIYQEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +ADVERP V + D NG + L A QHE DHL G+LF + ++
Sbjct: 95 LSIPEQYADVERPAEVGMRYMDENGETHEIEADGLLATCIQHEIDHLDGVLFTDYLS 151
>gi|420240715|ref|ZP_14744917.1| peptide deformylase [Rhizobium sp. CF080]
gi|398075470|gb|EJL66583.1| peptide deformylase [Rhizobium sp. CF080]
Length = 171
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 69/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +L+V + E E + V +NP + + S+++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRLLVVDVAREGEEKQPQVFINPEIVRSSDEIAVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP +V + +G + V L A QHE DHL G+LF + ++
Sbjct: 95 LSIPEYYAEVERPATVSVRHLGRDGKEYVVEADGLLATCLQHEIDHLNGVLFIDHIS 151
>gi|374607063|ref|ZP_09679869.1| peptide deformylase [Paenibacillus dendritiformis C454]
gi|374387335|gb|EHQ58851.1| peptide deformylase [Paenibacillus dendritiformis C454]
Length = 160
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 75/126 (59%), Gaps = 5/126 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY +G+GL+APQ+GI +++V + E G I ++NP + K + + EGC
Sbjct: 35 MADTMYHAEGVGLAAPQIGILKRVIVVDVGDEHGL---IEMINPVILKAEGEQLG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV R + + + D +G F+V SD AR FQHE DHL GILF E + + V
Sbjct: 91 LSIPGLNGDVRRHQHITVQGLDRHGNTFTVEASDFLARAFQHEIDHLNGILFTE-IAESV 149
Query: 121 LDSIRE 126
+ RE
Sbjct: 150 YEVPRE 155
>gi|444335725|ref|YP_007392094.1| peptide deformylase [Blattabacterium sp. (Blatta orientalis) str.
Tarazona]
gi|444300104|gb|AGD98341.1| peptide deformylase [Blattabacterium sp. (Blatta orientalis) str.
Tarazona]
Length = 167
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI-----VLVNPRVNKYSNKMIP 55
MF+ ++K GIGL+APQ+G N++L + G++I V +N R+ K K
Sbjct: 36 MFETIHKVKGIGLAAPQIGKNIRLFIVETPYLLENGKDIDNYKEVFINARILKIHGKEYE 95
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+ EGCLS PGI DV+R V I+ D N + +L + ARV QHE+DH++G LF +
Sbjct: 96 FNEGCLSLPGIMGDVKRKSYVSIEYYDHNWKKKKETLKGICARVIQHEYDHMEGKLFIDY 155
Query: 116 MT 117
+
Sbjct: 156 FS 157
>gi|254476440|ref|ZP_05089826.1| peptide deformylase [Ruegeria sp. R11]
gi|214030683|gb|EEB71518.1| peptide deformylase [Ruegeria sp. R11]
Length = 169
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 65/117 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY G GL+APQVG+ ++ V + + G ++ +NP + S++ + EGC
Sbjct: 34 MLDTMYGAPGRGLAAPQVGVLQRVFVMDTTWKDGTRAPLICINPEIKDRSDRHVSGPEGC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PG+ VER E V ++ D+ G R A QHE+DHL GI+ F+R++
Sbjct: 94 LSIPGVSLTVERSEWVDLEWSDLQGVRHCRRFDGFDAICIQHEYDHLDGIVTFDRVS 150
>gi|126726109|ref|ZP_01741951.1| peptide deformylase [Rhodobacterales bacterium HTCC2150]
gi|126705313|gb|EBA04404.1| peptide deformylase [Rhodobacterales bacterium HTCC2150]
Length = 159
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 73/129 (56%), Gaps = 6/129 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-EGEEIVLVNPRVNKYSNKMIPYEEG 59
M MY+ GIGL+APQ+G+ +L+V + V E G + + + NP + S+++ Y+EG
Sbjct: 22 MLATMYEAPGIGLAAPQIGVLERLIVLDCVKEEGADPRPVAMFNPEITASSDELSVYDEG 81
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P I+A+V RP V + ++GA + + L A QHE DHL G LF D
Sbjct: 82 CLSIPEIYAEVTRPAEVSVRWMGLDGAEHNETFDGLWATCVQHEIDHLNGKLFI-----D 136
Query: 120 VLDSIREQL 128
L ++ Q+
Sbjct: 137 YLKPLKRQM 145
>gi|404400582|ref|ZP_10992166.1| peptide deformylase [Pseudomonas fuscovaginae UPB0736]
Length = 168
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + + Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHQRIVVMDLSEDRSEPR--VFINPEFEALTEEKDQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP V+I A D +G F + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPTRVRIKALDRDGKPFELEADGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|385232665|ref|YP_005794007.1| peptide deformylase [Ketogulonicigenium vulgare WSH-001]
gi|343461576|gb|AEM40011.1| Peptide deformylase [Ketogulonicigenium vulgare WSH-001]
Length = 186
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 71/128 (55%), Gaps = 5/128 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+ PQVG +++V + + + +V+VNP++ S+ YEEGC
Sbjct: 48 MLETMYDAPGIGLAGPQVGQLQRIIVLDCAKDPDAPQPLVMVNPQIVWSSDDRSVYEEGC 107
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P +A+VERP SVK+ D+NG + L A QHE DHL G LF D
Sbjct: 108 LSIPDQYAEVERPASVKVRWLDLNGNEQDREMEGLWATCVQHEIDHLDGKLFI-----DY 162
Query: 121 LDSIREQL 128
L ++ QL
Sbjct: 163 LGPMKRQL 170
>gi|417842405|ref|ZP_12488491.1| Peptide deformylase [Haemophilus haemolyticus M21127]
gi|341951696|gb|EGT78254.1| Peptide deformylase [Haemophilus haemolyticus M21127]
Length = 169
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 75/128 (58%), Gaps = 3/128 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+APQV I +++ + G++ ++VL+NP + S EEGC
Sbjct: 35 MFDTMYQEEGIGLAAPQVDILQRIITIDVEGDKQN--QLVLINPEI-LASEGETGIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG A V R E VK+ A D +G F++ L A QHE DHL GILF + ++
Sbjct: 92 LSIPGFRALVPRKEKVKVRALDRDGKEFTLDADGLLAICIQHEIDHLNGILFVDYLSPLK 151
Query: 121 LDSIREQL 128
I+E+L
Sbjct: 152 RQRIKEKL 159
>gi|297250811|ref|ZP_06934289.1| peptide deformylase [Neisseria polysaccharea ATCC 43768]
gi|296837967|gb|EFH21905.1| peptide deformylase [Neisseria polysaccharea ATCC 43768]
Length = 181
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 49 MFETMYEARGIGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIVEKDGE-TTYEEGC 105
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+ V R E VK++A + G +F++ L A QHE DHL GI+F ER++
Sbjct: 106 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVERLSQLK 165
Query: 121 LDSIREQLE 129
I+ +L+
Sbjct: 166 QGRIKTKLK 174
>gi|372278111|ref|ZP_09514147.1| peptide deformylase [Oceanicola sp. S124]
Length = 172
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 68/118 (57%), Gaps = 1/118 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+GI +L+V + V E GE +V+ NP + S++ YEEG
Sbjct: 34 MLETMYDAPGIGLAAPQIGILQRLIVLDCVKEDGEAPRPLVMFNPEIVSASDETSSYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLS P +A+V RP V + D +G + L A QHE DHL+G LF + ++
Sbjct: 94 CLSIPEQYAEVTRPAEVTVRWMDRDGNAREETFDKLWATCVQHEIDHLEGKLFIDHIS 151
>gi|313667406|ref|YP_004047690.1| polypeptide deformylase [Neisseria lactamica 020-06]
gi|313004868|emb|CBN86294.1| polypeptide deformylase [Neisseria lactamica 020-06]
Length = 167
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 35 MFETMYEARGIGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIVEKDGET-TYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+ V R E VK++A + G +F++ L A QHE DHL GI+F ER++
Sbjct: 92 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVERLSQLK 151
Query: 121 LDSIREQLE 129
I+ +L+
Sbjct: 152 QGRIKTKLK 160
>gi|240122199|ref|ZP_04735161.1| peptide deformylase [Neisseria gonorrhoeae PID24-1]
gi|254494753|ref|ZP_05107924.1| polypeptide deformylase [Neisseria gonorrhoeae 1291]
gi|268600061|ref|ZP_06134228.1| polypeptide deformylase [Neisseria gonorrhoeae MS11]
gi|268683213|ref|ZP_06150075.1| polypeptide deformylase [Neisseria gonorrhoeae SK-92-679]
gi|226513793|gb|EEH63138.1| polypeptide deformylase [Neisseria gonorrhoeae 1291]
gi|268584192|gb|EEZ48868.1| polypeptide deformylase [Neisseria gonorrhoeae MS11]
gi|268623497|gb|EEZ55897.1| polypeptide deformylase [Neisseria gonorrhoeae SK-92-679]
Length = 161
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 3/117 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY++ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 29 MFETMYESRGIGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIVEKDGET-TYEEGC 85
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ V R E VK++A + G +F++ L A QHE DHL GI+F ER++
Sbjct: 86 LSVPGIYDAVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVERLS 142
>gi|239826564|ref|YP_002949188.1| peptide deformylase [Geobacillus sp. WCH70]
gi|239806857|gb|ACS23922.1| peptide deformylase [Geobacillus sp. WCH70]
Length = 157
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 71/116 (61%), Gaps = 4/116 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M++ M DG+GL+APQVGI Q+ V + + G I L+NPR+ + + I EGC
Sbjct: 35 MYETMIDEDGVGLAAPQVGIAKQIAVVDVGDKHGR---IELINPRIIEARGEQIG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LSFPG+ +V+R VK+ A+D G F++ ++ AR QHE DHL GILF ++
Sbjct: 91 LSFPGLFGEVKRANYVKVRAQDRRGRVFTLEATEFLARALQHEIDHLNGILFTSKV 146
>gi|408379935|ref|ZP_11177526.1| peptide deformylase [Agrobacterium albertimagni AOL15]
gi|407746312|gb|EKF57837.1| peptide deformylase [Agrobacterium albertimagni AOL15]
Length = 170
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 68/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+A QVG+ +L+V + E E +V +NP + K S++ YEEGC
Sbjct: 35 MLETMYEAPGIGLAAIQVGVPRRLLVIDLAKEGEEPAPLVYINPEIIKSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP S+ + + +G L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPASITVKSIGRDGKETVTEADGLLATCLQHEIDHLNGVLFIDHIS 151
>gi|310815113|ref|YP_003963077.1| peptide deformylase [Ketogulonicigenium vulgare Y25]
gi|308753848|gb|ADO41777.1| peptide deformylase [Ketogulonicigenium vulgare Y25]
Length = 173
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 71/128 (55%), Gaps = 5/128 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+ PQVG +++V + + + +V+VNP++ S+ YEEGC
Sbjct: 35 MLETMYDAPGIGLAGPQVGQLQRIIVLDCAKDPDAPQPLVMVNPQIVWSSDDRSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P +A+VERP SVK+ D+NG + L A QHE DHL G LF D
Sbjct: 95 LSIPDQYAEVERPASVKVRWLDLNGNEQDREMEGLWATCVQHEIDHLDGKLFI-----DY 149
Query: 121 LDSIREQL 128
L ++ QL
Sbjct: 150 LGPMKRQL 157
>gi|261378988|ref|ZP_05983561.1| peptide deformylase [Neisseria cinerea ATCC 14685]
gi|269144603|gb|EEZ71021.1| peptide deformylase [Neisseria cinerea ATCC 14685]
Length = 167
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 72/117 (61%), Gaps = 3/117 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 35 MFETMYEARGIGLAATQVDVHERIVVMDLTEDRSEPR--VFINPVIVEKDGET-TYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ V R ESVK++A + G +F++ L A QHE DHL GI+F E ++
Sbjct: 92 LSVPGIYDTVTRAESVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVEHLS 148
>gi|373467154|ref|ZP_09558455.1| peptide deformylase [Haemophilus sp. oral taxon 851 str. F0397]
gi|371759113|gb|EHO47859.1| peptide deformylase [Haemophilus sp. oral taxon 851 str. F0397]
Length = 189
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 75/128 (58%), Gaps = 3/128 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+APQV I +++ + G++ ++VL+NP + S EEGC
Sbjct: 55 MFDTMYQEEGIGLAAPQVDILQRIITIDVEGDKQN--QLVLINPEILA-SEGETGIEEGC 111
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG A V R E VK+ A D +G F++ L A QHE DHL GILF + ++
Sbjct: 112 LSIPGFRALVPRKEKVKVRALDRDGKEFTLDADGLLAICIQHEIDHLNGILFVDYLSPLK 171
Query: 121 LDSIREQL 128
I+E+L
Sbjct: 172 RQRIKEKL 179
>gi|126728525|ref|ZP_01744341.1| peptide deformylase [Sagittula stellata E-37]
gi|126711490|gb|EBA10540.1| peptide deformylase [Sagittula stellata E-37]
Length = 165
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 63/116 (54%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY G GL+APQVG+ +L V + + GE V +NP V P EE C
Sbjct: 34 MFETMYAAPGRGLAAPQVGVRSRLFVMDATWKDGEKTPTVCINPVVAPLDGPEEPGEEAC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LS PG+ V RP +++ D++ V L+ AR+ QHE DHL G++ F+ +
Sbjct: 94 LSMPGVSVMVTRPTRIRLRYTDLDDKTHEVVLTGAAARIAQHETDHLDGVMHFQHL 149
>gi|88705378|ref|ZP_01103089.1| Formylmethionine deformylase [Congregibacter litoralis KT71]
gi|88700468|gb|EAQ97576.1| Formylmethionine deformylase [Congregibacter litoralis KT71]
Length = 168
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+A QV ++ +L+V + R + +V +NP V + + Y+EGC
Sbjct: 35 MIETMYEASGIGLAATQVNVHKRLLVLDISENRDQ--PMVFINPEVTVLDDTLGSYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V RP V+++A +G FS L L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYEEVNRPRKVRVEALGRDGESFSQELDGLAAICLQHEIDHLDGKLFVDYISPLK 152
Query: 121 LDSIREQLE 129
+ IR +LE
Sbjct: 153 RNRIRSKLE 161
>gi|433506162|ref|ZP_20463081.1| peptide deformylase [Neisseria meningitidis 9757]
gi|432244178|gb|ELK99673.1| peptide deformylase [Neisseria meningitidis 9757]
Length = 167
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 73/117 (62%), Gaps = 3/117 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY++ G+GL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 35 MFETMYESRGVGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIVEKDGET-TYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ V R E VK++A + G +F++ L A QHE DHL GI+F ER++
Sbjct: 92 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVERLS 148
>gi|15807421|ref|NP_296154.1| peptide deformylase [Deinococcus radiodurans R1]
gi|23396556|sp|Q9RRQ4.1|DEF_DEIRA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|6460249|gb|AAF11975.1|AE002073_5 polypeptide deformylase [Deinococcus radiodurans R1]
Length = 232
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 82/145 (56%), Gaps = 19/145 (13%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV---FNPVGERGEGEEI----------VLVNPRV- 46
M + M++ G+GL+APQ+G+ V++ V + E EG+E V++NP V
Sbjct: 62 MLETMFEERGVGLAAPQIGLPVRMFVAVEYADDEEENEGQETPLRSRVLREYVMLNPVVK 121
Query: 47 --NKYSNKMIPYEEGCLSFPGIHAD-VERPESVKIDARDINGARFSVSLSDLPARVFQHE 103
NK +K Y+EGCLS PGI+ D V R V++D D++G S+ D ARVFQHE
Sbjct: 122 VINKKKDKS--YQEGCLSIPGIYEDGVPRARQVRVDYTDLDGQPRSIEAEDYLARVFQHE 179
Query: 104 FDHLQGILFFERMTDDVLDSIREQL 128
DHL G LF + + D+ + R+ L
Sbjct: 180 TDHLDGKLFLDHLPADITEDHRKDL 204
>gi|407717361|ref|YP_006838641.1| peptide deformylase 1 [Cycloclasticus sp. P1]
gi|407257697|gb|AFT68138.1| Peptide deformylase 1 [Cycloclasticus sp. P1]
Length = 176
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 78/128 (60%), Gaps = 3/128 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV + +L+V + V E + E++ L+NP + + + +EGC
Sbjct: 35 MFETMYAAPGIGLAATQVNYHKRLIVID-VSE-DKNEQLCLINPVIT-HKEGIEVMQEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + DVER ESV I A+D +G F ++ DL A QHE DHL G LF + ++
Sbjct: 92 LSVPGFYEDVERAESVTISAQDEHGKPFELTADDLLAVCIQHEIDHLDGKLFVDYLSPLK 151
Query: 121 LDSIREQL 128
+ IR++L
Sbjct: 152 RNRIRKKL 159
>gi|410664993|ref|YP_006917364.1| peptide deformylase [Simiduia agarivorans SA1 = DSM 21679]
gi|409027350|gb|AFU99634.1| peptide deformylase [Simiduia agarivorans SA1 = DSM 21679]
Length = 167
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A Q+ ++ Q++V + E + + +V +NP + + Y+EGC
Sbjct: 34 MFETMYDCPGIGLAATQINVHEQIIVIDISEE--QNQPMVFINPEIEVLDQETGTYDEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG VERP +++ A D +G F + L A QHE DHL G LF + ++
Sbjct: 92 LSVPGFSETVERPIHIRVRALDRDGKAFEIQPDGLLATCIQHEIDHLNGKLFVDHISTLK 151
Query: 121 LDSIREQLE 129
D IR++LE
Sbjct: 152 RDRIRKKLE 160
>gi|359435205|ref|ZP_09225428.1| peptide deformylase [Pseudoalteromonas sp. BSi20652]
gi|359442175|ref|ZP_09232049.1| peptide deformylase [Pseudoalteromonas sp. BSi20429]
gi|392535953|ref|ZP_10283090.1| peptide deformylase [Pseudoalteromonas arctica A 37-1-2]
gi|357918106|dbj|GAA61677.1| peptide deformylase [Pseudoalteromonas sp. BSi20652]
gi|358035958|dbj|GAA68298.1| peptide deformylase [Pseudoalteromonas sp. BSi20429]
Length = 167
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+A QV I+ +++V + ER E +VL+NP++ K + EEGC
Sbjct: 35 MLETMYDENGIGLAATQVDIHQRIVVIDVSEERDEP--LVLINPQIIKKDGSTVS-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P +A V+R E+V + A + NG F + +L A QHE DHLQG LF + ++
Sbjct: 92 LSVPNSYAKVDRAETVTVAALNENGEEFVLDADELLAICIQHELDHLQGKLFIDYLSPLK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RQRIRKKLE 160
>gi|255067832|ref|ZP_05319687.1| peptide deformylase [Neisseria sicca ATCC 29256]
gi|255047923|gb|EET43387.1| peptide deformylase [Neisseria sicca ATCC 29256]
Length = 193
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 72/117 (61%), Gaps = 3/117 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 61 MFETMYEARGIGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIVEKDGE-TTYEEGC 117
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ V R E VK++A + G +F++ L A QHE DHL GI+F ER++
Sbjct: 118 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVERLS 174
>gi|213965569|ref|ZP_03393763.1| peptide deformylase [Corynebacterium amycolatum SK46]
gi|213951728|gb|EEB63116.1| peptide deformylase [Corynebacterium amycolatum SK46]
Length = 167
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 73/131 (55%), Gaps = 9/131 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD M + G+GL+A QVG+ ++ V++ G RG +VNP ++ + EGC
Sbjct: 35 MFDTMDEQQGVGLAANQVGVLQRVFVYDCNGTRGH-----IVNPEWEAIGDETVHEIEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD- 119
LS PGI+ V R V++ +D +G S DL AR QHE DHL G+LF +R+ D
Sbjct: 90 LSIPGINGPVTRHARVRVTGQDRHGTPVSFEADDLLARCVQHESDHLDGVLFLKRLEGDE 149
Query: 120 ---VLDSIREQ 127
+ S+REQ
Sbjct: 150 RKTAMRSLREQ 160
>gi|149925345|ref|ZP_01913609.1| peptide deformylase [Limnobacter sp. MED105]
gi|149825462|gb|EDM84670.1| peptide deformylase [Limnobacter sp. MED105]
Length = 169
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 70/117 (59%), Gaps = 2/117 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+A QV ++ +++V + ++ V +NP + S + YEEGC
Sbjct: 35 MAETMYDAPGVGLAATQVNVHKRIIVIDVTDDKSGL--TVFINPEIIDASKECKVYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ VERP++VK+ A+++ G F + +L A QHE DHL G +F E ++
Sbjct: 93 LSVPGIYEKVERPDTVKVRAQNVKGEWFEIDCDELLAVCIQHEIDHLNGKVFVEYLS 149
>gi|284006131|emb|CBA71372.1| polypeptide deformylase [Arsenophonus nasoniae]
Length = 171
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ +GIGL+A QV I+ +++V + R E +VL+NP + + S + EEGC
Sbjct: 35 MFETMYEEEGIGLAATQVNIHQRIIVIDVSESRNE--RLVLINPVILETSGET-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P A V R + VKI A D+NG F + DL A QHE DHL G LF + ++
Sbjct: 92 LSVPEQRAFVPRAKWVKIKALDVNGKEFELETDDLLAICIQHEIDHLNGKLFIDYLSALK 151
Query: 121 LDSIREQLE 129
IR+++E
Sbjct: 152 RQRIRQKIE 160
>gi|212703762|ref|ZP_03311890.1| hypothetical protein DESPIG_01810 [Desulfovibrio piger ATCC 29098]
gi|212672730|gb|EEB33213.1| peptide deformylase [Desulfovibrio piger ATCC 29098]
Length = 170
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ G+GL+APQVG N++++V +P + E + V++NP + ++ +EGC
Sbjct: 34 MLETMYEAPGVGLAAPQVGRNIRMLVMDPAAQDEEKQPRVVINPELTLSEETVLSRQEGC 93
Query: 61 LSFP-GIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LS P ADV+R E V + D++G L A V QHE DHL G LF +R+
Sbjct: 94 LSVPLNYRADVQRAERVHLRYMDLDGKIVEEDLEGFAAIVIQHEADHLDGTLFIDRI 150
>gi|93004869|ref|YP_579306.1| peptide deformylase [Psychrobacter cryohalolentis K5]
gi|123386822|sp|Q1QET1.1|DEF_PSYCK RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|92392547|gb|ABE73822.1| peptide deformylase [Psychrobacter cryohalolentis K5]
Length = 184
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 75/134 (55%), Gaps = 6/134 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++QL+V + ++ V +NP+V + PYEEGC
Sbjct: 35 MIETMYDAQGIGLAASQVDHHIQLIVMDLSEDKDSPR--VFINPKVTPLVEEKQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT--- 117
LS P ++ VERP V+I+A D NG + + L A QHE DHL G++F + ++
Sbjct: 93 LSVPDVYDKVERPNKVRIEALDENGNKIDEEVEGLLAVCIQHEMDHLNGVIFVDYLSRLK 152
Query: 118 -DDVLDSIREQLEI 130
D +R+ L+I
Sbjct: 153 QTRARDKVRKVLKI 166
>gi|414175566|ref|ZP_11429970.1| peptide deformylase [Afipia broomeae ATCC 49717]
gi|410889395|gb|EKS37198.1| peptide deformylase [Afipia broomeae ATCC 49717]
Length = 171
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 66/117 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY GIGL+A QV + ++L+ + + GE E V +NP + S++M YEEGC
Sbjct: 35 MFQTMYDAPGIGLAAIQVAVPLRLITMDLSKKEGEKEPRVFINPEILASSDEMSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P + +VERP V++ D+ G L A QHE DHL G+LF + ++
Sbjct: 95 LSIPEYYEEVERPARVRVRFMDLEGVTREEDAEGLYATCIQHEIDHLNGVLFVDYLS 151
>gi|410692111|ref|YP_003622732.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Thiomonas sp.
3As]
gi|294338535|emb|CAZ86864.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Thiomonas sp.
3As]
Length = 168
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 72/117 (61%), Gaps = 2/117 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY ++G+GL+A QV ++ +++V + ER + + L+NP + ++S + +EEGC
Sbjct: 35 MFETMYASNGVGLAATQVDVHERIIVMDTSEERNQ--PLALINPEIVRHSAEDKEWEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ V RP +V++ A D G F + L A QHE DHL G +F + ++
Sbjct: 93 LSVPGIYDKVTRPATVRVRALDAQGQPFEMDADGLTAVCIQHEMDHLLGKVFVDYLS 149
>gi|206889750|ref|YP_002248176.1| peptide deformylase [Thermodesulfovibrio yellowstonii DSM 11347]
gi|238058215|sp|B5YIL7.1|DEF_THEYD RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|206741688|gb|ACI20745.1| peptide deformylase [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 165
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+APQVG+ +L+V + IVL+NP + +++ EEGC
Sbjct: 35 MIETMYNANGIGLAAPQVGVLKRLIVVDTSPREQNQSLIVLINPEITDSEGEILS-EEGC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PG ++R E V + D NG + + L AR QHE DHL GIL ++++
Sbjct: 94 LSLPGFTTRLKRKERVIVKGLDRNGKEIEIEATGLLARALQHEIDHLDGILLIDKIS 150
>gi|402846702|ref|ZP_10895011.1| peptide deformylase [Porphyromonas sp. oral taxon 279 str. F0450]
gi|402267394|gb|EJU16789.1| peptide deformylase [Porphyromonas sp. oral taxon 279 str. F0450]
Length = 188
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 79/133 (59%), Gaps = 10/133 (7%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGE---RGEGEEIVLVNPRVNKYSNKMIP 55
M++ MY +DGIGL+APQ+G ++L V + P+ E +G + +N R+ + S +
Sbjct: 34 MWETMYFSDGIGLAAPQIGRAIRLFVIDADPMAETFPECKGLKQTFINARIVESSEDTLA 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
EGCLS PGI+ V RP ++ I+ D + + + ARV QHE+DH++G+LF ++
Sbjct: 94 ENEGCLSIPGINEKVTRPATITIEYLDADFQPHRETYTGFAARVIQHEYDHIEGVLFIDK 153
Query: 116 MTDDVLDSIREQL 128
+ +IR+QL
Sbjct: 154 IA-----TIRKQL 161
>gi|409408453|ref|ZP_11256888.1| polypeptide deformylase [Herbaspirillum sp. GW103]
gi|386431775|gb|EIJ44603.1| polypeptide deformylase [Herbaspirillum sp. GW103]
Length = 172
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+A QV ++ Q++V + V + G+ + V +NP + S + Y+EGC
Sbjct: 35 MAETMYAAPGVGLAASQVDVHEQVVVID-VSDEGKNLQ-VFINPEILWASEEKRVYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+ VERP VK+ A D +G F V DL A QHE DHL+G +F E ++
Sbjct: 93 LSVPGIYDGVERPARVKVRAFDADGKAFEVDADDLLAVCIQHEMDHLKGKVFVEYLSPLK 152
Query: 121 LDSIREQLE 129
+ I+ +L+
Sbjct: 153 RNRIKTKLQ 161
>gi|419795997|ref|ZP_14321571.1| peptide deformylase [Neisseria sicca VK64]
gi|385699950|gb|EIG30213.1| peptide deformylase [Neisseria sicca VK64]
Length = 193
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 72/117 (61%), Gaps = 3/117 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 61 MFETMYEARGIGLAATQVDVHERVVVMDLTEDRSEPR--VFINPVIIEKDGET-TYEEGC 117
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ V R E VK++A + G +F++ L A QHE DHL GI+F ER++
Sbjct: 118 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVERLS 174
>gi|338730832|ref|YP_004660224.1| peptide deformylase [Thermotoga thermarum DSM 5069]
gi|335365183|gb|AEH51128.1| peptide deformylase [Thermotoga thermarum DSM 5069]
Length = 168
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 77/128 (60%), Gaps = 6/128 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
+F+ MY+ DG+GL+APQVG+++++ V + +G +NP++ S + + EEGC
Sbjct: 33 LFETMYQYDGVGLAAPQVGVSLRIFVMD------DGTPRAFINPKIIYASPEKVVDEEGC 86
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG+ +VER + V + D NG D AR+ QHE+DHL+G LF + + +
Sbjct: 87 LSIPGVFENVERSKEVIVRYIDENGQEREEKFIDRSARIVQHEYDHLEGRLFIDLLPAER 146
Query: 121 LDSIREQL 128
++RE+L
Sbjct: 147 RFALREKL 154
>gi|291542591|emb|CBL15701.1| peptide deformylase [Ruminococcus bromii L2-63]
Length = 158
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 72/117 (61%), Gaps = 6/117 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + ++K +G+GL+APQVGI +++V + GEG I LVNP++ YS K E GC
Sbjct: 35 MIETLHKAEGVGLAAPQVGILRRVVVIDV----GEGP-IELVNPKIIAYSGKQETLE-GC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PG RP+ VK+ A+D +G F + DL A+ F HE DHL+GILF + T
Sbjct: 89 LSIPGKWGYTVRPDYVKVKAQDRHGDEFVIDGKDLLAKAFCHELDHLEGILFTQVAT 145
>gi|313203124|ref|YP_004041781.1| peptide deformylase [Paludibacter propionicigenes WB4]
gi|312442440|gb|ADQ78796.1| peptide deformylase [Paludibacter propionicigenes WB4]
Length = 183
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 76/133 (57%), Gaps = 10/133 (7%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-----IVLVNPRVNKYSNKMIP 55
MF MY +G+GL+APQVG+ ++L+V + + + E I ++NP + + S + +
Sbjct: 34 MFQTMYHAEGVGLAAPQVGLPIRLLVIDLAPFKEDDPELGAFKITMINPEILERSEEEVS 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+EGCLS PGIH V R +S+KI D + + ARV QHE+DHL+G LF +
Sbjct: 94 GDEGCLSIPGIHETVSRAQSIKITYLDPDFKEHTDVFEGYKARVVQHEYDHLEGHLFTDH 153
Query: 116 MTDDVLDSIREQL 128
+T IR QL
Sbjct: 154 VT-----PIRRQL 161
>gi|451940123|ref|YP_007460761.1| polypeptide deformylase [Bartonella australis Aust/NH1]
gi|451899510|gb|AGF73973.1| polypeptide deformylase [Bartonella australis Aust/NH1]
Length = 176
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 69/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+A QV + ++++V + + +V++NP + S++ Y+EGC
Sbjct: 35 MLETMYDAQGVGLAAIQVAVPLRMLVVDVARQDSSQNPLVIINPEILWLSDERSVYKEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP+ +++ RD G + + DL A QHE DHL G LF + ++
Sbjct: 95 LSIPDYYAEVERPKCLRVRYRDREGKQKEIEADDLLATCLQHEIDHLNGRLFIDHIS 151
>gi|410448937|ref|ZP_11303007.1| peptide deformylase [Leptospira sp. Fiocruz LV3954]
gi|418744111|ref|ZP_13300467.1| peptide deformylase [Leptospira santarosai str. CBC379]
gi|418751971|ref|ZP_13308243.1| peptide deformylase [Leptospira santarosai str. MOR084]
gi|409967700|gb|EKO35525.1| peptide deformylase [Leptospira santarosai str. MOR084]
gi|410017279|gb|EKO79341.1| peptide deformylase [Leptospira sp. Fiocruz LV3954]
gi|410794562|gb|EKR92462.1| peptide deformylase [Leptospira santarosai str. CBC379]
gi|456873843|gb|EMF89189.1| peptide deformylase [Leptospira santarosai str. ST188]
Length = 170
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 78/141 (55%), Gaps = 12/141 (8%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGE----EIVLVNPRVNKYSNKMIP 55
MFD M+ +G+GL+APQ+GI +++V ER G E V++NP + +
Sbjct: 30 MFDTMHHAEGVGLAAPQIGILKRIVVVGSEDNERYPGTPNVPERVILNPIITPLTKDTSG 89
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+ EGCLS PG+ VERP +++ D G +F ++ A V+QHE DHL GIL+ +R
Sbjct: 90 FWEGCLSVPGMRGYVERPNKIRMQWMDEKGNQFDETIDGYKAVVYQHECDHLSGILYVDR 149
Query: 116 MTD-------DVLDSIREQLE 129
+ D D LDS R L+
Sbjct: 150 LKDTKLFGFNDTLDSGRNVLD 170
>gi|260426170|ref|ZP_05780149.1| peptide deformylase [Citreicella sp. SE45]
gi|260420662|gb|EEX13913.1| peptide deformylase [Citreicella sp. SE45]
Length = 176
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 75/131 (57%), Gaps = 9/131 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE---IVLVNPRVNKYSNKMIPYE 57
M + MY GIGL+APQVGI +L+V + ++ GE +V++NPR+ S++ YE
Sbjct: 37 MLETMYDAPGIGLAAPQVGILHRLIVLD-CAKQDNGETPRPLVMINPRILASSDERSVYE 95
Query: 58 EGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
EGCLS P +ADVERP+ V+++ D +G L A QHE DHL G LF
Sbjct: 96 EGCLSIPDQYADVERPKMVEVEWLDRDGKLQKEEFDGLWATCVQHEIDHLDGKLFI---- 151
Query: 118 DDVLDSIREQL 128
D L ++ Q+
Sbjct: 152 -DYLKPLKRQM 161
>gi|78484538|ref|YP_390463.1| peptide deformylase [Thiomicrospira crunogena XCL-2]
gi|123755296|sp|Q31J84.1|DEF_THICR RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|78362824|gb|ABB40789.1| peptide deformylase [Thiomicrospira crunogena XCL-2]
Length = 169
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY GIGL+APQV + +L+V + + E + E I L+NP + K + K I +EEGC
Sbjct: 35 MFYTMYDAPGIGLAAPQVAVQQRLIVVD-ISETKD-EPIALLNPEIIKTAGK-ITWEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+A V+RP + + D +G ++L A QHE DHL G LF + ++
Sbjct: 92 LSIPGIYAKVDRPSDILVRGMDRDGKTIEFEANELLAVCIQHEIDHLNGKLFIDHLS 148
>gi|254780297|ref|YP_003064710.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62]
gi|254039974|gb|ACT56770.1| peptide deformylase [Candidatus Liberibacter asiaticus str. psy62]
Length = 170
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 70/129 (54%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M +VMY TDGIGL+A Q+G+ +L+V + +V +NP++ +S+ Y+EGC
Sbjct: 35 MLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHRKNPMVFINPKIITFSDDFSVYQEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P ADV+R + + D N + L A QHE DHL GILF + ++
Sbjct: 95 LSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLK 154
Query: 121 LDSIREQLE 129
D I +++
Sbjct: 155 RDMITKKMS 163
>gi|218672914|ref|ZP_03522583.1| peptide deformylase [Rhizobium etli GR56]
Length = 171
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 67/117 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + K S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP V + D NG V L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAVVSVKYLDRNGKEQMVEADGLLATCLQHEIDHLNGVLFIDYIS 151
>gi|407474139|ref|YP_006788539.1| peptide deformylase Def [Clostridium acidurici 9a]
gi|407050647|gb|AFS78692.1| peptide deformylase Def [Clostridium acidurici 9a]
Length = 150
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 71/120 (59%), Gaps = 6/120 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MYK +G+GL+APQVGI +++V + GEG I ++NP + + I +E GC
Sbjct: 35 MIETMYKEEGVGLAAPQVGILKRVVVVDI----GEGP-ITMINPEILSEEGETIDFE-GC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG V RP VK+ DING ++ D AR F HE DHL GIL+ +R+ ++
Sbjct: 89 LSVPGKRGKVNRPFKVKVKFTDINGEEKTLEGEDFLARAFCHEIDHLDGILYIDRVIGEI 148
>gi|342903781|ref|ZP_08725586.1| Peptide deformylase [Haemophilus haemolyticus M21621]
gi|341954451|gb|EGT80931.1| Peptide deformylase [Haemophilus haemolyticus M21621]
Length = 169
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 75/128 (58%), Gaps = 3/128 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+APQV I +++ + G++ ++VL+NP + S EEGC
Sbjct: 35 MFDTMYQEEGIGLAAPQVDILQRIITIDVEGDKQN--QLVLINPEI-LASEGETGIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG A V R E VK+ A D +G F++ L A QHE DHL G+LF + ++
Sbjct: 92 LSIPGFRALVPRKEKVKVRALDRDGKEFTLDADGLLAICIQHEIDHLNGVLFVDYLSPLK 151
Query: 121 LDSIREQL 128
I+E+L
Sbjct: 152 RQRIKEKL 159
>gi|157692252|ref|YP_001486714.1| peptide deformylase [Bacillus pumilus SAFR-032]
gi|157681010|gb|ABV62154.1| formylmethionine deformylase [Bacillus pumilus SAFR-032]
Length = 160
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 68/116 (58%), Gaps = 4/116 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI+ ++ V + +GE E I LVNP V + E GC
Sbjct: 35 MYDTMLELDGVGLAAPQIGISQRIAVVD-IGE--ESGRIDLVNPEVLEVKGSQTDIE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LSFP ++ VERP VK+ A D G F++ AR HE DHL GILF ++
Sbjct: 91 LSFPSLYGTVERPSYVKVKAFDKKGKPFTIEAEGFLARALLHEIDHLDGILFTSKI 146
>gi|83859278|ref|ZP_00952799.1| polypeptide deformylase [Oceanicaulis sp. HTCC2633]
gi|83852725|gb|EAP90578.1| polypeptide deformylase [Oceanicaulis alexandrii HTCC2633]
Length = 175
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 70/117 (59%), Gaps = 2/117 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY DGIGL+A QVG++ +++V + ER + VNP + + + PY+EGC
Sbjct: 35 MVETMYAADGIGLAAIQVGVDKRVIVMDLSDERNDPR--YYVNPVITPLTEDLKPYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P + VERP+ VK++ D +G + DL A QHE DHL+G++F + ++
Sbjct: 93 LSVPDVFDSVERPKKVKVEYLDYDGEKREEIAEDLFAVCIQHEMDHLEGVVFIDYLS 149
>gi|182625873|ref|ZP_02953639.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721]
gi|177908907|gb|EDT71399.1| polypeptide deformylase [Clostridium perfringens D str. JGS1721]
Length = 147
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 69/114 (60%), Gaps = 4/114 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + M++ +G+GL+APQVGI ++ V + + G V +NP + + S + EEGC
Sbjct: 35 MIETMHENNGVGLAAPQVGILKRIFVVDAMDGAGSR---VFINPEILEKSGEQTD-EEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
LS PG H V+R +KI A D+NG F + + AR QHE+DHL+G+LF +
Sbjct: 91 LSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEEFLARAIQHEYDHLEGVLFID 144
>gi|83309342|ref|YP_419606.1| N-formylmethionyl-tRNA deformylase [Magnetospirillum magneticum
AMB-1]
gi|82944183|dbj|BAE49047.1| N-formylmethionyl-tRNA deformylase [Magnetospirillum magneticum
AMB-1]
Length = 190
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M D MY GIGL+APQ+G+ +++V + +G + E I +VNP + S++ YEEG
Sbjct: 55 MLDTMYHAPGIGLAAPQIGVLERVIVMD-IGRKEEDRAPIRMVNPEIVWASDEDNTYEEG 113
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLS P +++V RP SVK+ D GA+ + L A V QHE DHL GILF + ++
Sbjct: 114 CLSVPEHYSNVVRPASVKVRYLDETGAKQEILADGLLATVVQHEMDHLDGILFIDHLS 171
>gi|418696315|ref|ZP_13257324.1| peptide deformylase [Leptospira kirschneri str. H1]
gi|409955844|gb|EKO14776.1| peptide deformylase [Leptospira kirschneri str. H1]
Length = 181
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 71/123 (57%), Gaps = 5/123 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGE----EIVLVNPRVNKYSNKMIP 55
MFD M +G+GL+APQ+GI Q++V ER G E +++NP + +
Sbjct: 38 MFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERIILNPIITPLTKDTSG 97
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+ EGCLS PG+ VERP +++ D G +F ++ A V+QHE DHLQGIL+ +R
Sbjct: 98 FWEGCLSVPGMRGYVERPNRIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDR 157
Query: 116 MTD 118
+ D
Sbjct: 158 LKD 160
>gi|422014709|ref|ZP_16361318.1| peptide deformylase [Providencia burhodogranariea DSM 19968]
gi|414100589|gb|EKT62204.1| peptide deformylase [Providencia burhodogranariea DSM 19968]
Length = 167
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 68/118 (57%), Gaps = 4/118 (3%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ D MY TD GIGL+APQVG+ +MV + R E +V VNP + + S Y+EG
Sbjct: 34 LLDTMYSTDSGIGLAAPQVGVTQSVMVIDISENRNEP--LVFVNPEIIE-SEGETSYQEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLS P I+ADV R + VK+ A D G F D A V QHE DHL G +F + ++
Sbjct: 91 CLSVPEIYADVARFQRVKVKALDREGNEFITESDDFLAIVMQHEIDHLHGKIFLDHLS 148
>gi|347732975|ref|ZP_08866041.1| peptide deformylase [Desulfovibrio sp. A2]
gi|347518261|gb|EGY25440.1| peptide deformylase [Desulfovibrio sp. A2]
Length = 180
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ DGIGL+APQVG + +L+V + G + VNPR+ K I EEGC
Sbjct: 30 MAETMYRQDGIGLAAPQVGEHCRLIVVDVSGPEKREALMTFVNPRLELTGEK-IDSEEGC 88
Query: 61 LSFPG-IHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PG A V R ++V++ ARD++G + L A QHE DHL+G LF + ++
Sbjct: 89 LSVPGGYRATVTRSDTVRLTARDLDGNEVCMDADGLLAVCLQHEVDHLKGTLFIDHIS 146
>gi|429219990|ref|YP_007181634.1| peptide deformylase [Deinococcus peraridilitoris DSM 19664]
gi|429130853|gb|AFZ67868.1| peptide deformylase [Deinococcus peraridilitoris DSM 19664]
Length = 209
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 84/143 (58%), Gaps = 15/143 (10%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE---RGEGEE----------IVLVNPRVN 47
M + MY+ G+GL+APQVG+ V++ V + EG+E +V+VNP +
Sbjct: 46 MLETMYEARGVGLAAPQVGLPVRMFVAAEYADDEDENEGKETPLRSRVLRELVIVNPVLE 105
Query: 48 KYSN-KMIPYEEGCLSFPGIHAD-VERPESVKIDARDINGARFSVSLSDLPARVFQHEFD 105
+ K Y+EGCLS PGI+ + V R +V++ +D++GA + D ARVFQHEFD
Sbjct: 106 VINRRKDTDYQEGCLSIPGIYEEGVARDRAVRLRYQDLSGAVQVIEAEDYLARVFQHEFD 165
Query: 106 HLQGILFFERMTDDVLDSIREQL 128
HL+G LF +R+ V ++ R+ L
Sbjct: 166 HLEGRLFLDRLPPAVTETHRKAL 188
>gi|218887129|ref|YP_002436450.1| peptide deformylase [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218758083|gb|ACL08982.1| peptide deformylase [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 184
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 70/118 (59%), Gaps = 2/118 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ DGIGL+APQVG + +L+V + G + VNPR+ +K + EEGC
Sbjct: 34 MAETMYRQDGIGLAAPQVGEHCRLIVVDVSGPEKREALMTFVNPRLELTGDK-VDSEEGC 92
Query: 61 LSFPG-IHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PG A V R ++V++ ARD++G + L A QHE DHL+G LF + ++
Sbjct: 93 LSVPGGYRATVTRSDTVRLTARDLDGNEVCMDADGLLAVCLQHEVDHLKGTLFIDHIS 150
>gi|421588144|ref|ZP_16033464.1| peptide deformylase [Rhizobium sp. Pop5]
gi|403707226|gb|EJZ22278.1| peptide deformylase [Rhizobium sp. Pop5]
Length = 171
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 67/117 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVTSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP V + D NG +V L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAVVSVKYLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDHIS 151
>gi|269214256|ref|ZP_06158455.1| peptide deformylase [Neisseria lactamica ATCC 23970]
gi|269210257|gb|EEZ76712.1| peptide deformylase [Neisseria lactamica ATCC 23970]
Length = 181
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + R E V +NP + + + YEEGC
Sbjct: 49 MFETMYEARGIGLAATQVDVHERVVVMDLSENRSEPR--VFINPVIVEKDGE-TTYEEGC 105
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+ V R E VK++A + G +F++ L A QHE DHL GI+F ER++
Sbjct: 106 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVERLSQLK 165
Query: 121 LDSIREQLE 129
I+ +L+
Sbjct: 166 QSRIKTKLK 174
>gi|375309206|ref|ZP_09774487.1| peptide deformylase [Paenibacillus sp. Aloe-11]
gi|375078515|gb|EHS56742.1| peptide deformylase [Paenibacillus sp. Aloe-11]
Length = 165
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 6/115 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPR-VNKYSNKMIPYEEG 59
M D MY+ +G+GL+APQVGI +L+V + E G I ++NP V + ++ P EG
Sbjct: 35 MADTMYEAEGVGLAAPQVGILKRLIVVDAGDEHGL---IKMINPEIVAEEGEQLGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
CLS PG++ DV R E V + D G +V+ + L +R FQHE DHL G+LF +
Sbjct: 90 CLSIPGLNGDVRRAEKVTVKGLDREGKAITVTATGLLSRAFQHEIDHLNGVLFTD 144
>gi|384083011|ref|ZP_09994186.1| peptide deformylase [gamma proteobacterium HIMB30]
Length = 170
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 79/128 (61%), Gaps = 2/128 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A Q+ ++++++V + + + E +V++NP + + ++ +EGC
Sbjct: 35 MFETMYEAQGIGLAATQIDVHLRVVVIDL--QDDQNEPLVMINPEFDTLTKEIDEMQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGIH V+RPE +++ A D +G + + + L A QHE DHL G LF + +++
Sbjct: 93 LSVPGIHEVVKRPEHIRLKALDRDGNSYELEATGLFAVCIQHECDHLNGKLFVDHLSNLK 152
Query: 121 LDSIREQL 128
I+ +L
Sbjct: 153 RSRIKAKL 160
>gi|429333783|ref|ZP_19214474.1| peptide deformylase [Pseudomonas putida CSV86]
gi|428761587|gb|EKX83810.1| peptide deformylase [Pseudomonas putida CSV86]
Length = 168
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ +++V + +R E V +NP + + + M Y+EGC
Sbjct: 35 MFETMYDAPGIGLAATQVNVHKRVVVMDLSEDRSEPR--VFINPELEELTQDMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP V++ A D +G + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPLQVRVKALDRDGKPYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|296134589|ref|YP_003641831.1| peptide deformylase [Thiomonas intermedia K12]
gi|295794711|gb|ADG29501.1| peptide deformylase [Thiomonas intermedia K12]
Length = 168
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 72/117 (61%), Gaps = 2/117 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY ++G+GL+A QV ++ +++V + +R + + L+NP + ++S + +EEGC
Sbjct: 35 MFETMYASNGVGLAATQVDVHERIIVMDTSEQRNQ--PLALINPEIVRHSAEDKEWEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ V RP +V++ A D G F + L A QHE DHL G +F + ++
Sbjct: 93 LSVPGIYDKVTRPATVRVRALDAQGQPFEMDADGLTAVCIQHEMDHLMGKVFVDYLS 149
>gi|395650510|ref|ZP_10438360.1| peptide deformylase [Pseudomonas extremaustralis 14-3 substr.
14-3b]
Length = 168
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + +M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHQRVVVMDLSEDRSEPR--VFINPEFEPLTEEMGEYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + +VERP VKI+A D +G + + L A QHE DHL G LF + ++
Sbjct: 93 LSVPEFYENVERPLRVKINALDRDGKPYELIAEGLLAVCIQHECDHLNGKLFVDYLSTLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|114568993|ref|YP_755673.1| peptide deformylase [Maricaulis maris MCS10]
gi|122316781|sp|Q0ASK2.1|DEF_MARMM RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|114339455|gb|ABI64735.1| peptide deformylase [Maricaulis maris MCS10]
Length = 174
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 68/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY DGIGL+A QVG+ +++V + G E + VNP ++ S+ + PYEEGC
Sbjct: 35 MLQTMYAADGIGLAAIQVGVPKRVIVMDLAGSDEEAKPRYFVNPVLSDPSDTLKPYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P ++ ++ERP+ + I D +G + A QHE DHL+G+LF + ++
Sbjct: 95 LSVPTVYDEIERPDRIHIQYLDYDGNECEEIAEGMFAVCIQHEMDHLEGVLFIDYLS 151
>gi|99082420|ref|YP_614574.1| peptide deformylase [Ruegeria sp. TM1040]
gi|99038700|gb|ABF65312.1| peptide deformylase [Ruegeria sp. TM1040]
Length = 174
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 74/129 (57%), Gaps = 6/129 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+G+ +L+V + V E G+ +V+ NPRV S++ YEEG
Sbjct: 34 MLETMYAAPGIGLAAPQIGVLDRLIVMDCVKEGEGDARPLVMFNPRVIASSDETNVYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +A+V RP+ V ++ D +G + + L A QHE DHL G LF D
Sbjct: 94 CLSIPEQYAEVTRPKVVDVEWMDRDGNLQTETFDGLWATCVQHEIDHLDGKLFI-----D 148
Query: 120 VLDSIREQL 128
L ++ Q+
Sbjct: 149 YLKPLKRQM 157
>gi|374310947|ref|YP_005057377.1| peptide deformylase [Granulicella mallensis MP5ACTX8]
gi|358752957|gb|AEU36347.1| peptide deformylase [Granulicella mallensis MP5ACTX8]
Length = 185
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+APQ+GI+ Q+ V + + +++ L+NP + + K + EEGC
Sbjct: 50 MFESMYAAQGIGLAAPQIGISKQITVIDVSFKERPEDKLALINPEIIEREGKQV-EEEGC 108
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P I V R VK+ A+++ G F V +L AR QHE DHL GILF E ++
Sbjct: 109 LSLPEIREKVSRAARVKVRAQNVKGEFFEVEGEELLARALQHEIDHLHGILFIEHLS 165
>gi|398837167|ref|ZP_10594477.1| peptide deformylase [Herbaspirillum sp. YR522]
gi|398209158|gb|EJM95839.1| peptide deformylase [Herbaspirillum sp. YR522]
Length = 172
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+A Q+ ++ +++V + V + G+ + V +NP V S++ Y+EGC
Sbjct: 35 MAETMYDAPGVGLAATQIDVHERVIVID-VSDEGKQLQ-VFINPEVLWASDEKRVYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+ VERP VK+ A+D +G F V DL A QHE DHL+G +F E ++
Sbjct: 93 LSVPGIYDGVERPARVKVRAQDADGQPFEVEADDLLAVCIQHEMDHLEGKVFVEYLSPLK 152
Query: 121 LDSIREQLE 129
+ I+ +L+
Sbjct: 153 RNRIKTKLQ 161
>gi|385799657|ref|YP_005836061.1| peptide deformylase [Halanaerobium praevalens DSM 2228]
gi|309389021|gb|ADO76901.1| peptide deformylase [Halanaerobium praevalens DSM 2228]
Length = 150
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 68/116 (58%), Gaps = 5/116 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY DG+GL+APQ+G+ ++ V + EG +++L+NP + + K I EEGC
Sbjct: 35 MFETMYAEDGVGLAAPQIGMLKRIAVVDI----REGNKVILINPEIIEKEGKAI-MEEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LS PG DV R E +K+ + + G + AR QHE DHL GILF +++
Sbjct: 90 LSIPGETGDVIRAEKIKVKSLNRKGKEVTFLAEGFEARAIQHEIDHLDGILFVDKI 145
>gi|423612084|ref|ZP_17587945.1| peptide deformylase 1 [Bacillus cereus VD107]
gi|401247091|gb|EJR53435.1| peptide deformylase 1 [Bacillus cereus VD107]
Length = 156
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 74/118 (62%), Gaps = 6/118 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + M DG+GL+APQVG+++Q+ V + + G+ I L+NP + K ++ P EG
Sbjct: 35 MHETMLIADGVGLAAPQVGVSLQVAVVDIGDDTGK---IELINPVILEKRGEQVGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLSFPG++ +VER + +K+ A++ G F + D AR QHE DHL G+LF ++T
Sbjct: 90 CLSFPGLYGEVERADYIKVRAQNRRGKIFLLEAKDFLARAIQHEIDHLHGVLFTSKVT 147
>gi|296535343|ref|ZP_06897545.1| peptide deformylase [Roseomonas cervicalis ATCC 49957]
gi|296264327|gb|EFH10750.1| peptide deformylase [Roseomonas cervicalis ATCC 49957]
Length = 177
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MYK GIGL+APQ+G ++L+V + + + E V++NP + S ++ EEGC
Sbjct: 39 MLATMYKAPGIGLAAPQIGELLRLVVVD-LQPDEKPEPYVMINPEIVAASTELSSREEGC 97
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+V RP +K+ D+ GA+ + L A QHE DHL G+LF + ++
Sbjct: 98 LSLPNQYAEVTRPAEIKVRWLDLEGAKREMQADGLLATCIQHEIDHLNGVLFVDHLS 154
>gi|229031497|ref|ZP_04187497.1| Peptide deformylase [Bacillus cereus AH1271]
gi|228729786|gb|EEL80766.1| Peptide deformylase [Bacillus cereus AH1271]
Length = 156
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 74/118 (62%), Gaps = 6/118 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + M DG+GL+APQVG+++Q+ V + + G+ I L+NP + K ++ P EG
Sbjct: 35 MHETMLIADGVGLAAPQVGVSLQVAVVDIDDDTGK---IELINPSILEKRGEQVGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLSFPG++ +VER + +K+ A++ G F + AR QHE DHLQG+LF ++T
Sbjct: 90 CLSFPGLYGEVERADYIKVRAQNRRGKVFLLEAEGFLARAIQHEIDHLQGVLFTSKVT 147
>gi|228473115|ref|ZP_04057872.1| peptide deformylase [Capnocytophaga gingivalis ATCC 33624]
gi|228275697|gb|EEK14474.1| peptide deformylase [Capnocytophaga gingivalis ATCC 33624]
Length = 198
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 80/140 (57%), Gaps = 17/140 (12%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGE----------GEEIVLVNPRVNK 48
M+ MY ++G+GL+APQVG+ ++L V + P E + G + +N ++ K
Sbjct: 34 MYQTMYHSNGVGLAAPQVGLAIRLFVVDTEPFCENDDLSDAERDYLKGFKKAFINAKILK 93
Query: 49 YSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
+ P+ EGCLS PGI DV R ++ I+ +D + A + + S L ARV QHE+DH++
Sbjct: 94 EEGEPWPFSEGCLSIPGISEDVLRKPTIVIEYQDEHFATHTETFSGLVARVIQHEYDHIE 153
Query: 109 GILFFERMTDDVLDSIREQL 128
GILF D L S ++QL
Sbjct: 154 GILF-----TDHLSSFKKQL 168
>gi|120436619|ref|YP_862305.1| peptide deformylase [Gramella forsetii KT0803]
gi|158512448|sp|A0M3P3.1|DEF_GRAFK RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|117578769|emb|CAL67238.1| peptide deformylase [Gramella forsetii KT0803]
Length = 196
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 76/129 (58%), Gaps = 12/129 (9%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVG-----ERGEGEEIVL-------VNPRVNK 48
M+D MY G+GL+APQVG+ V++ + +P E E E+ VL +NP++ +
Sbjct: 34 MWDTMYNAYGVGLAAPQVGLPVRMFMIDPAPFADDEELDEAEKKVLMDLRKVFINPQIIE 93
Query: 49 YSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
+ + + EGCLS P + DV R + I+ D N + + + S L ARV QHE+DH++
Sbjct: 94 ETGEEWAFSEGCLSIPEVREDVFRQPDITIEYHDENWEKHTETYSGLAARVIQHEYDHIE 153
Query: 109 GILFFERMT 117
GILF ++++
Sbjct: 154 GILFTDKLS 162
>gi|392390840|ref|YP_006427443.1| peptide deformylase [Ornithobacterium rhinotracheale DSM 15997]
gi|390521918|gb|AFL97649.1| peptide deformylase [Ornithobacterium rhinotracheale DSM 15997]
Length = 190
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 74/129 (57%), Gaps = 11/129 (8%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGEGEEI---------VLVNPRVNKY 49
MF+ MY +GIG++APQVG+ ++L V + P E E E I V +N +
Sbjct: 34 MFETMYTANGIGIAAPQVGLPIRLFVIDITPFAEDEEYENIAEELKTFKKVFINAHKIEE 93
Query: 50 SNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQG 109
+ + + EGCLS P + DV RPES+ + D N + + SD+ ARV QHE+DH+ G
Sbjct: 94 TGEPWKFNEGCLSIPNVREDVARPESITLRYLDENFVEHTETFSDIFARVIQHEYDHIDG 153
Query: 110 ILFFERMTD 118
+LF + +++
Sbjct: 154 VLFTDYLSN 162
>gi|296284446|ref|ZP_06862444.1| peptide deformylase [Citromicrobium bathyomarinum JL354]
Length = 190
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 75/136 (55%), Gaps = 19/136 (13%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI-------------------VL 41
MF+ MY +GIGL+A QVG+ +++V + E + E I V
Sbjct: 37 MFETMYAANGIGLAAIQVGVPKRILVIDLQPEDPDAEPIECDHDGHKHTHPATKKEPRVF 96
Query: 42 VNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQ 101
+NP + + ++ Y+EGCLS P I+ADV+RP + + +D++G + ++ L A Q
Sbjct: 97 INPEILDPNEELATYQEGCLSVPDIYADVDRPATCTVRWKDLDGKEHTEAMEGLLATCIQ 156
Query: 102 HEFDHLQGILFFERMT 117
HE DHL+GILF + ++
Sbjct: 157 HEMDHLEGILFIDHLS 172
>gi|193215216|ref|YP_001996415.1| peptide deformylase [Chloroherpeton thalassium ATCC 35110]
gi|193088693|gb|ACF13968.1| peptide deformylase [Chloroherpeton thalassium ATCC 35110]
Length = 202
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 80/131 (61%), Gaps = 3/131 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN-PVGERGEGEE-IVLVNPRVNKYSNKMIPYEE 58
MF+ MY DGIGL+APQVG +++L+V + V E + E+ +V++NP++ + + + EE
Sbjct: 53 MFETMYNADGIGLAAPQVGKSLRLLVVDVSVMEDYQDEKPLVVINPQILE-TKGLSTMEE 111
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
GCLS PG+H +V RP+ + + RD + + ARV QHE +HLQG LF + +
Sbjct: 112 GCLSVPGVHEEVTRPKQITLKYRDADFVERVEIYDGMMARVLQHEIEHLQGNLFIDNLDA 171
Query: 119 DVLDSIREQLE 129
RE+L+
Sbjct: 172 KTRRLHREELD 182
>gi|116515231|ref|YP_802860.1| hypothetical protein BCc_313 [Buchnera aphidicola BCc]
gi|122285373|sp|Q057D2.1|DEF_BUCCC RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|58384664|gb|AAW72679.1| polypeptide deformylase [Buchnera aphidicola (Cinara cedri)]
gi|116257085|gb|ABJ90767.1| polypeptide deformylase [Buchnera aphidicola BCc]
Length = 149
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY +GIGL+APQ+ I Q++V + + + E+VL+NP + K + K I EGC
Sbjct: 35 MFDTMYANNGIGLAAPQINILKQIIVISSL--KPTMSELVLINPVILKKNKKYINTIEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
LS P A ++R +KI A + G F+++ L + QHE DHL G LF +
Sbjct: 93 LSIPKKTAKIKRSSCIKIQAINTYGKSFTLTAKSLLSICIQHEIDHLIGKLFID 146
>gi|78187332|ref|YP_375375.1| peptide deformylase [Chlorobium luteolum DSM 273]
gi|123730026|sp|Q3B2U9.1|DEF_PELLD RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|78167234|gb|ABB24332.1| peptide deformylase [Chlorobium luteolum DSM 273]
Length = 190
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI---VLVNPRVNKYSNKMIPYE 57
MF+ M GIGL+APQVG +++L+V + V E++ V++NP V K + E
Sbjct: 34 MFESMENASGIGLAAPQVGCSIRLLVLD-VSCMKSYEDVPPMVVINPNVLAVRGKNL-ME 91
Query: 58 EGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
EGCLS PG+ DV RP + + RD N + S + ARV QHE DHL G LF +RM
Sbjct: 92 EGCLSVPGVQGDVLRPSEITLKYRDRNFQEHTEEFSGMLARVLQHEIDHLNGTLFVDRME 151
Query: 118 DDVLDSIREQLE 129
I+++L+
Sbjct: 152 KRDRRRIQQELD 163
>gi|262277954|ref|ZP_06055747.1| peptide deformylase [alpha proteobacterium HIMB114]
gi|262225057|gb|EEY75516.1| peptide deformylase [alpha proteobacterium HIMB114]
Length = 171
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 68/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+APQVGI +++V + E + + + NP++ S+++ EEGC
Sbjct: 35 MLETMYQAPGIGLAAPQVGILKKVIVIDLAKEDEPKKPLFIANPKIIWKSDELSSREEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PG A+V RP K+ D +G + + DL + QHE DH G+LF + ++
Sbjct: 95 LSIPGYFAEVVRPTKCKLQYLDYDGKQQEIEAEDLLSTCIQHEVDHCDGVLFIDYLS 151
>gi|110597712|ref|ZP_01385996.1| Peptide deformylase [Chlorobium ferrooxidans DSM 13031]
gi|110340619|gb|EAT59099.1| Peptide deformylase [Chlorobium ferrooxidans DSM 13031]
Length = 186
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 75/130 (57%), Gaps = 3/130 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGEGEEIVLVNPRVNKYSNKMIPYEE 58
MF+ M +GIGL+APQVG +V+L+V + + + +V++NP + S + EE
Sbjct: 34 MFESMRNAEGIGLAAPQVGHSVRLLVLDLSCIDNYANEKPMVVINPHILAVSGCNV-MEE 92
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
GCLS PG++ DVERP + + RD + + S + AR QHE DHL G LF +RM
Sbjct: 93 GCLSIPGVNGDVERPAVISLKYRDEHFLERTREFSGMLARALQHEIDHLDGTLFVDRMEK 152
Query: 119 DVLDSIREQL 128
I+++L
Sbjct: 153 RSRKKIQKEL 162
>gi|423014486|ref|ZP_17005207.1| peptide deformylase [Achromobacter xylosoxidans AXX-A]
gi|338782489|gb|EGP46862.1| peptide deformylase [Achromobacter xylosoxidans AXX-A]
Length = 170
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY G+GL+A QV ++ +++V + E + +VL+NP + +S+ YEEGC
Sbjct: 35 MADTMYDAPGVGLAATQVDVHERVVVIDVSEE--SNQLLVLINPEITWHSDDYKIYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+ +VER ++ A DI+G F L A QHE DHL+G +F E +++
Sbjct: 93 LSVPGIYDEVERASRIRCKALDIDGKPFEFEADGLLAVCVQHELDHLEGKVFVEYLSNLK 152
Query: 121 LDSIREQLE 129
+ I+ +L+
Sbjct: 153 QNRIKTKLK 161
>gi|343518386|ref|ZP_08755378.1| peptide deformylase [Haemophilus pittmaniae HK 85]
gi|343393674|gb|EGV06227.1| peptide deformylase [Haemophilus pittmaniae HK 85]
Length = 158
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+APQV I +++ + G++ ++VL+NP + S EEGC
Sbjct: 35 MFDTMYQEEGIGLAAPQVDILQRIITIDVEGDKQN--QLVLINPEI-LASEGETGIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PG A V R E V + A D NG F+++ L A QHE DHL GILF + ++
Sbjct: 92 LSIPGFRALVPRKEKVTVKALDRNGQEFTLNADGLLAICIQHEIDHLNGILFVDYLS 148
>gi|293611136|ref|ZP_06693434.1| peptide deformylase [Acinetobacter sp. SH024]
gi|375136707|ref|YP_004997357.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
binds Zn(II)) [Acinetobacter calcoaceticus PHEA-2]
gi|427422650|ref|ZP_18912825.1| peptide deformylase [Acinetobacter baumannii WC-136]
gi|292826387|gb|EFF84754.1| peptide deformylase [Acinetobacter sp. SH024]
gi|325124152|gb|ADY83675.1| peptide deformylase 1 (N-formylmethionylaminoacyl-tRNA deformylase,
binds Zn(II)) [Acinetobacter calcoaceticus PHEA-2]
gi|425700560|gb|EKU70142.1| peptide deformylase [Acinetobacter baumannii WC-136]
Length = 176
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++QL+V + + + +V +NP++ + YEEGC
Sbjct: 35 MLETMYAAPGIGLAASQVDRHIQLIVID--LSESKDDPMVFINPKITPLTEDKQQYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ VERP VKI+A ++ G F + L A QHE DHL G LF + ++
Sbjct: 93 LSVPQIYDKVERPSRVKIEAINLEGQAFELEADGLLAVCIQHEMDHLNGKLFVDYLSPLK 152
Query: 121 LDSIREQLE 129
RE++E
Sbjct: 153 RQRAREKVE 161
>gi|365922494|ref|ZP_09446693.1| peptide deformylase [Cardiobacterium valvarum F0432]
gi|364573092|gb|EHM50609.1| peptide deformylase [Cardiobacterium valvarum F0432]
Length = 186
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 77/141 (54%), Gaps = 13/141 (9%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGE-------------EIVLVNPRVN 47
MF MY+ GIGL+A QV I+ +++V + +R E E ++L+NP +
Sbjct: 35 MFATMYEAHGIGLAATQVNIHRRIIVMDVPEKREEDESNDIPPETPVPHTRLILINPEII 94
Query: 48 KYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
+S + ++EGCLS PG ADV+RP++++ D+ GAR L QHE DHL
Sbjct: 95 SHSAETAVWQEGCLSLPGQFADVKRPKTIRYAYYDLGGARCEAEAEGLLGVCIQHEIDHL 154
Query: 108 QGILFFERMTDDVLDSIREQL 128
G+LF + ++ + I ++L
Sbjct: 155 NGVLFIDHLSRLKRERIEKKL 175
>gi|116328151|ref|YP_797871.1| peptide deformylase [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116331396|ref|YP_801114.1| peptide deformylase [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
gi|122280858|sp|Q04RW4.1|DEF_LEPBJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|122284057|sp|Q051Q7.1|DEF_LEPBL RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|116120895|gb|ABJ78938.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii
serovar Hardjo-bovis str. L550]
gi|116125085|gb|ABJ76356.1| N-formylmethionyl-tRNA deformylase [Leptospira borgpetersenii
serovar Hardjo-bovis str. JB197]
Length = 178
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 76/141 (53%), Gaps = 12/141 (8%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGE----EIVLVNPRVNKYSNKMIP 55
MFD M +G+GL+APQ+GI Q++V ER E V++NP + +
Sbjct: 38 MFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPDTPNVPERVILNPIITPLTKDTSG 97
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+ EGCLS PG+ VERP +++ D G RF ++ A V+QHE DHL GIL+ +R
Sbjct: 98 FWEGCLSVPGMRGYVERPNKIRMQWMDEKGDRFDETIDGYKAVVYQHECDHLSGILYVDR 157
Query: 116 MTD-------DVLDSIREQLE 129
+ D D LDS R L+
Sbjct: 158 LKDTKLFGFNDTLDSGRNVLD 178
>gi|429211000|ref|ZP_19202166.1| peptide deformylase [Pseudomonas sp. M1]
gi|428158414|gb|EKX04961.1| peptide deformylase [Pseudomonas sp. M1]
Length = 168
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + ++ E V +NP + + +M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHKRVVVMDLSEDKSEPR--VFINPELEPLTQEMGEYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP V++ A D +G F L A QHE DHL G LF + +++
Sbjct: 93 LSVPGFYENVDRPLRVRVKALDRDGKAFEEIAEGLLAVCIQHECDHLNGKLFVDYLSNLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|30263870|ref|NP_846247.1| peptide deformylase [Bacillus anthracis str. Ames]
gi|47529297|ref|YP_020646.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor']
gi|49186717|ref|YP_029969.1| peptide deformylase [Bacillus anthracis str. Sterne]
gi|65321194|ref|ZP_00394153.1| COG0242: N-formylmethionyl-tRNA deformylase [Bacillus anthracis
str. A2012]
gi|165872270|ref|ZP_02216907.1| peptide deformylase [Bacillus anthracis str. A0488]
gi|167636413|ref|ZP_02394712.1| peptide deformylase [Bacillus anthracis str. A0442]
gi|167641126|ref|ZP_02399381.1| peptide deformylase [Bacillus anthracis str. A0193]
gi|170688865|ref|ZP_02880068.1| peptide deformylase [Bacillus anthracis str. A0465]
gi|170708808|ref|ZP_02899244.1| peptide deformylase [Bacillus anthracis str. A0389]
gi|177654890|ref|ZP_02936607.1| peptide deformylase [Bacillus anthracis str. A0174]
gi|190565855|ref|ZP_03018774.1| peptide deformylase [Bacillus anthracis str. Tsiankovskii-I]
gi|227813225|ref|YP_002813234.1| peptide deformylase [Bacillus anthracis str. CDC 684]
gi|229601957|ref|YP_002868104.1| peptide deformylase [Bacillus anthracis str. A0248]
gi|254683424|ref|ZP_05147284.1| peptide deformylase [Bacillus anthracis str. CNEVA-9066]
gi|254735906|ref|ZP_05193612.1| peptide deformylase [Bacillus anthracis str. Western North America
USA6153]
gi|254739846|ref|ZP_05197539.1| peptide deformylase [Bacillus anthracis str. Kruger B]
gi|254751036|ref|ZP_05203075.1| peptide deformylase [Bacillus anthracis str. Vollum]
gi|254756701|ref|ZP_05208730.1| peptide deformylase [Bacillus anthracis str. Australia 94]
gi|386737689|ref|YP_006210870.1| Peptide deformylase 1 [Bacillus anthracis str. H9401]
gi|421507407|ref|ZP_15954327.1| peptide deformylase [Bacillus anthracis str. UR-1]
gi|421639622|ref|ZP_16080213.1| peptide deformylase [Bacillus anthracis str. BF1]
gi|39931068|sp|Q81WH1.1|DEF1_BACAN RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|30258514|gb|AAP27733.1| peptide deformylase [Bacillus anthracis str. Ames]
gi|47504445|gb|AAT33121.1| peptide deformylase [Bacillus anthracis str. 'Ames Ancestor']
gi|49180644|gb|AAT56020.1| polypeptide deformylase [Bacillus anthracis str. Sterne]
gi|164711946|gb|EDR17486.1| peptide deformylase [Bacillus anthracis str. A0488]
gi|167510906|gb|EDR86297.1| peptide deformylase [Bacillus anthracis str. A0193]
gi|167528155|gb|EDR90942.1| peptide deformylase [Bacillus anthracis str. A0442]
gi|170126293|gb|EDS95184.1| peptide deformylase [Bacillus anthracis str. A0389]
gi|170667220|gb|EDT17980.1| peptide deformylase [Bacillus anthracis str. A0465]
gi|172080401|gb|EDT65488.1| peptide deformylase [Bacillus anthracis str. A0174]
gi|190562774|gb|EDV16740.1| peptide deformylase [Bacillus anthracis str. Tsiankovskii-I]
gi|227002722|gb|ACP12465.1| peptide deformylase [Bacillus anthracis str. CDC 684]
gi|229266365|gb|ACQ48002.1| peptide deformylase [Bacillus anthracis str. A0248]
gi|384387541|gb|AFH85202.1| Peptide deformylase 1 [Bacillus anthracis str. H9401]
gi|401822541|gb|EJT21691.1| peptide deformylase [Bacillus anthracis str. UR-1]
gi|403393287|gb|EJY90532.1| peptide deformylase [Bacillus anthracis str. BF1]
Length = 156
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 74/118 (62%), Gaps = 6/118 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + M DG+GL+APQVG+++Q+ V + + G+ I L+NP + K ++ P EG
Sbjct: 35 MHETMLIADGVGLAAPQVGVSLQVAVVDIGDDTGK---IELINPSILEKRGEQVGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLSFPG++ +VER + +K+ A++ G F + L AR QHE DHL G+LF ++T
Sbjct: 90 CLSFPGLYGEVERADYIKVRAQNRRGKVFLLEAEGLLARAIQHEIDHLHGVLFTSKVT 147
>gi|15604081|ref|NP_220596.1| peptide deformylase [Rickettsia prowazekii str. Madrid E]
gi|383487053|ref|YP_005404733.1| peptide deformylase [Rickettsia prowazekii str. GvV257]
gi|383487629|ref|YP_005405308.1| peptide deformylase [Rickettsia prowazekii str. Chernikova]
gi|383488476|ref|YP_005406154.1| peptide deformylase [Rickettsia prowazekii str. Katsinyian]
gi|383489318|ref|YP_005406995.1| peptide deformylase [Rickettsia prowazekii str. Dachau]
gi|383499454|ref|YP_005412815.1| peptide deformylase [Rickettsia prowazekii str. BuV67-CWPP]
gi|383500293|ref|YP_005413653.1| peptide deformylase [Rickettsia prowazekii str. RpGvF24]
gi|386082041|ref|YP_005998618.1| Polypeptide deformylase [Rickettsia prowazekii str. Rp22]
gi|6225256|sp|Q9ZDV8.1|DEF_RICPR RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|3860772|emb|CAA14673.1| METHIONYL-TRNA DEFORMYLASE (def) [Rickettsia prowazekii str. Madrid
E]
gi|292571805|gb|ADE29720.1| Polypeptide deformylase [Rickettsia prowazekii str. Rp22]
gi|380757418|gb|AFE52655.1| peptide deformylase [Rickettsia prowazekii str. GvV257]
gi|380757990|gb|AFE53226.1| peptide deformylase [Rickettsia prowazekii str. RpGvF24]
gi|380760508|gb|AFE49030.1| peptide deformylase [Rickettsia prowazekii str. Chernikova]
gi|380761355|gb|AFE49876.1| peptide deformylase [Rickettsia prowazekii str. Katsinyian]
gi|380762200|gb|AFE50720.1| peptide deformylase [Rickettsia prowazekii str. BuV67-CWPP]
gi|380763041|gb|AFE51560.1| peptide deformylase [Rickettsia prowazekii str. Dachau]
Length = 175
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 78/134 (58%), Gaps = 5/134 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV-----FNPVGERGEGEEIVLVNPRVNKYSNKMIP 55
M + MY DG GL+A QVGI ++++V ++PV + + +VNP + + S +++
Sbjct: 35 MLETMYNADGAGLAAVQVGILLRILVIDIKEYDPVERPKDFYPLFIVNPEIIEKSTELVT 94
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
EGC+S P +V RPESVKI D +G + +D ARV QHE+DHL+G L +
Sbjct: 95 ANEGCISLPKQRIEVTRPESVKIRYLDYHGKSQELKANDWLARVIQHEYDHLEGKLMVDY 154
Query: 116 MTDDVLDSIREQLE 129
+++ D + +L+
Sbjct: 155 LSNLKRDVVLRKLK 168
>gi|395789111|ref|ZP_10468641.1| peptide deformylase [Bartonella taylorii 8TBB]
gi|395431245|gb|EJF97272.1| peptide deformylase [Bartonella taylorii 8TBB]
Length = 176
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 69/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY G+GL+A Q+GI ++++V + + +V++NP + S++ Y+EGC
Sbjct: 35 MLDTMYNAQGVGLAAIQIGIPLRMLVIDVSRDDISKNPLVVINPEILWLSDERNTYKEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP+ + + +D G + + DL A QHE DHL G LF + ++
Sbjct: 95 LSIPEYYAEVERPKRLCVRYQDRQGKQTEIEADDLLATCLQHEIDHLNGCLFIDHIS 151
>gi|410088705|ref|ZP_11285394.1| Peptide deformylase [Morganella morganii SC01]
gi|421494911|ref|ZP_15942248.1| DEF [Morganella morganii subsp. morganii KT]
gi|455737430|ref|YP_007503696.1| Peptide deformylase [Morganella morganii subsp. morganii KT]
gi|400190800|gb|EJO23959.1| DEF [Morganella morganii subsp. morganii KT]
gi|409764840|gb|EKN48968.1| Peptide deformylase [Morganella morganii SC01]
gi|455418993|gb|AGG29323.1| Peptide deformylase [Morganella morganii subsp. morganii KT]
Length = 169
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +GIGL+A QV I+ +++V + ER E +VL+NP + + S + EEGC
Sbjct: 35 MFETMYDEEGIGLAATQVDIHQRIIVIDVSEERNE--RLVLINPELLEKSGEA-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P A V R E VKI A D NG F + DL A QHE DHL+G LF + ++
Sbjct: 92 LSIPEQRAFVPRAEHVKIRALDYNGEPFELETGDLLAICIQHEMDHLEGKLFVDYLSAMK 151
Query: 121 LDSIREQLE 129
IR+++E
Sbjct: 152 RQRIRQKVE 160
>gi|456862922|gb|EMF81434.1| peptide deformylase [Leptospira weilii serovar Topaz str. LT2116]
Length = 170
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 5/134 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGE----EIVLVNPRVNKYSNKMIP 55
MFD M +G+GL+APQ+GI Q++V ER G E V++NP + +
Sbjct: 30 MFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERVILNPVITSLTKDTSG 89
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+ EGCLS PG+ VERP +++ D G +F ++ A V+QHE DHL GIL+ +R
Sbjct: 90 FWEGCLSVPGMRGYVERPNKIRMQWMDERGNQFDETIDGYKAVVYQHECDHLSGILYVDR 149
Query: 116 MTDDVLDSIREQLE 129
+ D L + L+
Sbjct: 150 LKDTKLFGFNDTLD 163
>gi|18310726|ref|NP_562660.1| peptide deformylase [Clostridium perfringens str. 13]
gi|110802372|ref|YP_699030.1| peptide deformylase [Clostridium perfringens SM101]
gi|23396559|sp|Q8XJL2.1|DEF1_CLOPE RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|18145407|dbj|BAB81450.1| polypeptide deformylase [Clostridium perfringens str. 13]
gi|110682873|gb|ABG86243.1| peptide deformylase [Clostridium perfringens SM101]
Length = 147
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 68/114 (59%), Gaps = 4/114 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ +G+GL++PQVGI ++ V + + G V +NP + + S + EEGC
Sbjct: 35 MIETMYENNGVGLASPQVGILKRIFVVDAMDGAGSR---VFINPEILEKSGEQTD-EEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
LS PG H V+R +KI A D+NG F + AR QHE+DHL+G+LF +
Sbjct: 91 LSLPGRHKPVKRANKIKIKALDVNGNEFVLDAEGFLARAIQHEYDHLEGVLFID 144
>gi|319796457|ref|YP_004158097.1| peptide deformylase [Variovorax paradoxus EPS]
gi|315598920|gb|ADU39986.1| peptide deformylase [Variovorax paradoxus EPS]
Length = 172
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 75/128 (58%), Gaps = 2/128 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+A Q+ ++ +L+V + ER + IVL+NP + S++ + EEGC
Sbjct: 35 MLETMYDAEGIGLAATQIDVHERLVVIDVSEERNK--PIVLINPEITWASDEKVLNEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+ V R SVK+ A D NG ++ L A QHE DHL G +F E ++
Sbjct: 93 LSVPGIYDGVMRSTSVKVQALDENGEMRTIEADGLLAVCIQHELDHLLGKVFVEYLSPLK 152
Query: 121 LDSIREQL 128
+ I+ +L
Sbjct: 153 RNRIKSKL 160
>gi|429744976|ref|ZP_19278431.1| peptide deformylase [Neisseria sp. oral taxon 020 str. F0370]
gi|429161635|gb|EKY04017.1| peptide deformylase [Neisseria sp. oral taxon 020 str. F0370]
Length = 167
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 71/117 (60%), Gaps = 3/117 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 35 MFETMYEARGIGLAATQVDVHERVVVMDLSEDRSEPR--VFINPVIVEKDGQ-TTYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ V R E VK++A D G +F++ L A QHE DHL GI+F E ++
Sbjct: 92 LSVPGIYDTVTRAERVKVEALDEKGEKFTLEADGLLAICVQHELDHLMGIVFVEHLS 148
>gi|371777658|ref|ZP_09483980.1| peptide deformylase [Anaerophaga sp. HS1]
Length = 185
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 68/117 (58%), Gaps = 5/117 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI-----VLVNPRVNKYSNKMIP 55
MF+ MY DGIGL+ PQ+G++ ++ V + + E+ V +N R+ + + +
Sbjct: 35 MFETMYNADGIGLAGPQIGLSKRIFVIDATPLAEDFPELTNFKKVFINARIIERDGEPVS 94
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILF 112
+EGCLS PGI DVERP +KI D++ + ARV QHE+DH+QGILF
Sbjct: 95 DQEGCLSIPGISEDVERPTKIKIRYVDVDFNEYEEVYEGWAARVIQHEYDHIQGILF 151
>gi|302340678|ref|YP_003805884.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293]
gi|301637863|gb|ADK83290.1| peptide deformylase [Spirochaeta smaragdinae DSM 11293]
Length = 174
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 74/123 (60%), Gaps = 8/123 (6%)
Query: 10 GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHAD 69
G L+APQ+ + Q++V + +GE E L+NP++ + S I YE GCLS PG
Sbjct: 49 GAALAAPQIALLKQIVVIDYLGEYYE-----LINPQIVEASGSSIDYE-GCLSLPGFWGQ 102
Query: 70 VERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVL--DSIREQ 127
VER + +K+ +D G +SV D AR FQHE DHL G+LF +RM+D+ + D +E+
Sbjct: 103 VERHQRIKVSYQDRFGEVYSVEAHDRMARCFQHEIDHLSGVLFIDRMSDEYVFNDDTKER 162
Query: 128 LEI 130
L +
Sbjct: 163 LPV 165
>gi|229019065|ref|ZP_04175903.1| Peptide deformylase [Bacillus cereus AH1273]
gi|229025309|ref|ZP_04181728.1| Peptide deformylase [Bacillus cereus AH1272]
gi|423389826|ref|ZP_17367052.1| peptide deformylase 1 [Bacillus cereus BAG1X1-3]
gi|423418226|ref|ZP_17395315.1| peptide deformylase 1 [Bacillus cereus BAG3X2-1]
gi|228736000|gb|EEL86576.1| Peptide deformylase [Bacillus cereus AH1272]
gi|228742233|gb|EEL92395.1| Peptide deformylase [Bacillus cereus AH1273]
gi|401106499|gb|EJQ14460.1| peptide deformylase 1 [Bacillus cereus BAG3X2-1]
gi|401641917|gb|EJS59634.1| peptide deformylase 1 [Bacillus cereus BAG1X1-3]
Length = 156
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 74/118 (62%), Gaps = 6/118 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + M DG+GL+APQVG+++Q+ V + + G+ I L+NP + K ++ P EG
Sbjct: 35 MHETMLIADGVGLAAPQVGVSLQVAVVDIDDDTGK---IELINPVILEKRGEQVGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLSFPG++ +VER + +K+ A++ G F + D AR QHE DHL G+LF ++T
Sbjct: 90 CLSFPGLYGEVERADYIKVRAQNRRGKIFLLEAKDFLARAIQHEIDHLHGVLFTSKVT 147
>gi|262038785|ref|ZP_06012139.1| peptide deformylase [Leptotrichia goodfellowii F0264]
gi|261747196|gb|EEY34681.1| peptide deformylase [Leptotrichia goodfellowii F0264]
Length = 170
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 68/117 (58%), Gaps = 5/117 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + M K +G+GL+A QV I + V E + +VNP + + S+++I YEEGC
Sbjct: 32 MVETMRKANGVGLAANQVDIPKRFFVLEV-----ENKVKKIVNPEIIESSDEIIEYEEGC 86
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ V RP +K+ + G L ++ AR FQHE DHL G+LF +R++
Sbjct: 87 LSIPGIYKKVNRPSEIKVKYLNEKGEEVIEELKEMWARAFQHELDHLDGVLFIDRIS 143
>gi|254361452|ref|ZP_04977592.1| peptide deformylase [Mannheimia haemolytica PHL213]
gi|261491954|ref|ZP_05988531.1| peptide deformylase [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261496243|ref|ZP_05992648.1| peptide deformylase [Mannheimia haemolytica serotype A2 str. OVINE]
gi|452744847|ref|ZP_21944687.1| peptide deformylase [Mannheimia haemolytica serotype 6 str. H23]
gi|153092962|gb|EDN73988.1| peptide deformylase [Mannheimia haemolytica PHL213]
gi|261308074|gb|EEY09372.1| peptide deformylase [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261312421|gb|EEY13547.1| peptide deformylase [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|452087089|gb|EME03472.1| peptide deformylase [Mannheimia haemolytica serotype 6 str. H23]
Length = 170
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 78/129 (60%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ +GIGL+APQVG+ +++ + G++ ++VL+NP + + S + EEGC
Sbjct: 35 MFETMYEHEGIGLAAPQVGVLKRVITIDIEGDKTN--QVVLINPEILESSGET-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG A V R E VK+ A + G + DL A QHE DHL G+LF + +++
Sbjct: 92 LSIPGHRALVPRKEKVKVKALNRQGEEIIIDADDLFAICIQHEIDHLNGVLFVDHISNLK 151
Query: 121 LDSIREQLE 129
I+E+++
Sbjct: 152 RQRIKEKMQ 160
>gi|395791605|ref|ZP_10471061.1| peptide deformylase [Bartonella alsatica IBS 382]
gi|395407908|gb|EJF74528.1| peptide deformylase [Bartonella alsatica IBS 382]
Length = 178
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 68/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY G+GL+A Q+GI ++++V + G + +V++NP + SN+ +EGC
Sbjct: 35 MLDTMYDAKGVGLAAIQIGIPLRMLVIDVSGNDAQKNPLVIINPEILWLSNEHNICKEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP+ + + RD G + + L A QHE DHL G LF + ++
Sbjct: 95 LSIPEYYAEVERPKRLCVCYRDREGKQTEIEADHLLATCLQHEIDHLNGRLFIDHIS 151
>gi|148655206|ref|YP_001275411.1| peptide deformylase [Roseiflexus sp. RS-1]
gi|254767600|sp|A5US58.1|DEF_ROSS1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|148567316|gb|ABQ89461.1| peptide deformylase [Roseiflexus sp. RS-1]
Length = 185
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 74/130 (56%), Gaps = 12/130 (9%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN---PVGERGEGEEI--------VLVNPRVNKY 49
MF+ M+ G+GL+APQ+GI +L V + V ER +G ++ VL+NP + K
Sbjct: 39 MFETMHAASGVGLAAPQIGITQRLAVISIPPVVEERPDGSKVEVAPEQNFVLINPEIIKA 98
Query: 50 SNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSV-SLSDLPARVFQHEFDHLQ 108
S++ EGCLS PG + +V R V ++ D+NG R + + L R QHE DHL
Sbjct: 99 SDQEDVGLEGCLSLPGWYGEVPRAAWVTVEYTDLNGRRQRIRRATGLLGRALQHEIDHLD 158
Query: 109 GILFFERMTD 118
GILF ER+ D
Sbjct: 159 GILFTERIRD 168
>gi|407976014|ref|ZP_11156916.1| peptide deformylase [Nitratireductor indicus C115]
gi|407428515|gb|EKF41197.1| peptide deformylase [Nitratireductor indicus C115]
Length = 176
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 68/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY GIGL+A QVG ++++V + + E +V++NP + S+ +EEGC
Sbjct: 35 MLDTMYDAPGIGLAAIQVGEPLRMLVVDVSDKDEEPAPLVVLNPEIVARSDARNVHEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +ADVERP V ++ DI G +V L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYADVERPARVTVNYMDIEGKMQTVEADGLLATCLQHEIDHLNGVLFIDYLS 151
>gi|75765204|pdb|1SZZ|A Chain A, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans Complexed With Inhibitor Actinonin
gi|75765205|pdb|1SZZ|B Chain B, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans Complexed With Inhibitor Actinonin
gi|75765206|pdb|1SZZ|C Chain C, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans Complexed With Inhibitor Actinonin
gi|75765207|pdb|1SZZ|D Chain D, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans Complexed With Inhibitor Actinonin
gi|75765208|pdb|1SZZ|E Chain E, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans Complexed With Inhibitor Actinonin
gi|75765209|pdb|1SZZ|F Chain F, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans Complexed With Inhibitor Actinonin
gi|75765210|pdb|1SZZ|G Chain G, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans Complexed With Inhibitor Actinonin
gi|75765211|pdb|1SZZ|H Chain H, Crystal Structure Of Peptide Deformylase From Leptospira
Interrogans Complexed With Inhibitor Actinonin
Length = 177
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 5/134 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGE----EIVLVNPRVNKYSNKMIP 55
MF M +G+GL+APQ+GI Q++V ER G E +++NP + +
Sbjct: 37 MFTTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSG 96
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+ EGCLS PG+ VERP +++ D G +F ++ A V+QHE DHLQGIL+ +R
Sbjct: 97 FWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDR 156
Query: 116 MTDDVLDSIREQLE 129
+ D L E L+
Sbjct: 157 LKDTKLFGFNETLD 170
>gi|374324701|ref|YP_005077830.1| peptide deformylase [Paenibacillus terrae HPL-003]
gi|357203710|gb|AET61607.1| peptide deformylase [Paenibacillus terrae HPL-003]
Length = 165
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 4/114 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY+ +G+GL+APQVGI +L+V + E G I ++NP + + E GC
Sbjct: 35 MADTMYEAEGVGLAAPQVGILKRLIVVDAGDEHGL---IKMINPEIVSEEGEQFGAE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
LS PG++ DV R E V + D +G +V+ + L +R FQHE DHL G+LF +
Sbjct: 91 LSIPGLNGDVRRAEKVTVKGLDRDGKAITVTATGLLSRAFQHEIDHLNGVLFTD 144
>gi|416893349|ref|ZP_11924537.1| peptide deformylase [Aggregatibacter aphrophilus ATCC 33389]
gi|347813903|gb|EGY30555.1| peptide deformylase [Aggregatibacter aphrophilus ATCC 33389]
Length = 170
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+APQV I +++ + G++ ++VL+NP + + K EEGC
Sbjct: 35 MFDTMYQEEGIGLAAPQVDILQRIITIDIEGDKQN--QLVLINPEILESEGKT-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PG A V R E V I A D +G F++ L A QHE DHL GILF + ++
Sbjct: 92 LSIPGFRAWVPRKEKVTIRALDRDGKEFTLKADGLLAICIQHEIDHLNGILFVDYLS 148
>gi|209965583|ref|YP_002298498.1| peptide deformylase [Rhodospirillum centenum SW]
gi|209959049|gb|ACI99685.1| peptide deformylase, Def, putative [Rhodospirillum centenum SW]
Length = 173
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M + MYK GIGL+APQVG+ +++V + + E I++ NP + S+++ +EG
Sbjct: 35 MLETMYKAPGIGLAAPQVGVLERVIVMDIAERKTEAPTPILMANPEIIARSDELATAQEG 94
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLS P I+ADV RP V++ D +G + L A QHE DHL G+LF + ++
Sbjct: 95 CLSIPDIYADVTRPRQVRVRYVDRDGEVRELDADGLTATCVQHEIDHLNGVLFVDYLS 152
>gi|390453284|ref|ZP_10238812.1| peptide deformylase [Paenibacillus peoriae KCTC 3763]
Length = 165
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 71/115 (61%), Gaps = 6/115 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPR-VNKYSNKMIPYEEG 59
M D MY+ +G+GL+APQVGI +L+V + E+G I ++NP V + ++ P EG
Sbjct: 35 MADTMYEAEGVGLAAPQVGILKRLIVVDAGDEQGL---IKMINPEIVAEEGEQLGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
CLS PG++ DV R E V + D G +V+ + L +R FQHE DHL G+LF +
Sbjct: 90 CLSIPGLNGDVRRAEKVTVKGLDREGKVITVTATGLLSRAFQHEIDHLNGVLFTD 144
>gi|110637113|ref|YP_677320.1| peptide deformylase [Cytophaga hutchinsonii ATCC 33406]
gi|123163813|sp|Q11X86.1|DEF_CYTH3 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|110279794|gb|ABG57980.1| peptide deformylase [Cytophaga hutchinsonii ATCC 33406]
Length = 184
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 73/131 (55%), Gaps = 8/131 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV---GERGEGEEIVLVNPRVNKYSNKMIPYE 57
MF+ M G+GL+APQV +N+++ V + E+ +NP + + PYE
Sbjct: 34 MFETMENAHGVGLAAPQVALNLRMFVIDTSVFDDEKITPVRKTFINPVIEEEWGDEWPYE 93
Query: 58 EGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
EGCLS PG+ ADV RP +++I D + + ARV QHE+DH++G+LF
Sbjct: 94 EGCLSIPGVRADVYRPANLRIRYFDTDWKEHVEEFDGMTARVIQHEYDHIEGVLFV---- 149
Query: 118 DDVLDSIREQL 128
D L SI+++L
Sbjct: 150 -DHLSSIKKRL 159
>gi|78355060|ref|YP_386509.1| peptide deformylase [Desulfovibrio alaskensis G20]
gi|78217465|gb|ABB36814.1| peptide deformylase [Desulfovibrio alaskensis G20]
Length = 169
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY DGIGL+APQVG +L+V + G + +NPR+ K + EEGC
Sbjct: 34 MAETMYDADGIGLAAPQVGATCRLIVVDVSGPEAREDLRTYINPRLELLEGK-VDTEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P + + V R E V++ A D++G + L + QHE DHL G LF ++++
Sbjct: 93 LSVPALRSKVTRTEKVRLHATDLDGNAVCIDADGLLSICLQHEIDHLDGTLFIDKIS 149
>gi|294500984|ref|YP_003564684.1| peptide deformylase [Bacillus megaterium QM B1551]
gi|294350921|gb|ADE71250.1| peptide deformylase [Bacillus megaterium QM B1551]
Length = 157
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 71/117 (60%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D+M + DG+GL+APQVG+ Q+ V + G+ I L+NP + + + I EGC
Sbjct: 35 MYDLMLEADGVGLAAPQVGVLQQVAVVDVDDRHGK---IELINPVIIEQRGEQIG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LSFPG+ DV R + VK+ A++ G + + AR QHE DHL G+LF E++T
Sbjct: 91 LSFPGLFGDVARADYVKVHAQNRKGKPYFIEAKGFLARAIQHEIDHLHGVLFTEKVT 147
>gi|402490565|ref|ZP_10837354.1| peptide deformylase [Rhizobium sp. CCGE 510]
gi|401810591|gb|EJT02964.1| peptide deformylase [Rhizobium sp. CCGE 510]
Length = 171
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 67/117 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAVQIGVPRRMLVIDIAREGEERQPQVFINPEIVTSSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP V + D NG +V L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAIVSVKYLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDYIS 151
>gi|71064611|ref|YP_263338.1| peptide deformylase [Psychrobacter arcticus 273-4]
gi|123734488|sp|Q4FVQ4.1|DEF_PSYA2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|71037596|gb|AAZ17904.1| peptide deformylase [Psychrobacter arcticus 273-4]
Length = 184
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 75/134 (55%), Gaps = 6/134 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+A QV ++QL+V + ++ V +NP+V + PYEEGC
Sbjct: 35 MIETMYDAEGIGLAASQVDHHIQLIVMDLSEDKDSPR--VFINPKVTPLVEEKQPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT--- 117
LS P ++ VERP V+I+A D NG + L A QHE DHL G++F + ++
Sbjct: 93 LSVPDVYDKVERPNKVRIEAIDQNGNAIDEEVEGLLAVCIQHEIDHLNGVIFVDYLSRLK 152
Query: 118 -DDVLDSIREQLEI 130
D +R+ L+I
Sbjct: 153 QTRARDKVRKVLKI 166
>gi|225012717|ref|ZP_03703152.1| peptide deformylase [Flavobacteria bacterium MS024-2A]
gi|225003250|gb|EEG41225.1| peptide deformylase [Flavobacteria bacterium MS024-2A]
Length = 195
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 75/129 (58%), Gaps = 12/129 (9%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGEGEEI----------VLVNPRVNK 48
M++ MY ++G+GL+APQ+G++++L V + P E E +E+ V +NP V +
Sbjct: 34 MWETMYASNGVGLAAPQIGLSIRLFVIDTAPFSEDDELDELEAETLKSFKKVFINPVVIE 93
Query: 49 YSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
+ + EGCLS P + DV R E +KI D + L+ L ARV QHE+DH++
Sbjct: 94 EDGSLWEFNEGCLSIPDVREDVSRHERIKIHYFDQQFKEQELVLTGLAARVVQHEYDHIE 153
Query: 109 GILFFERMT 117
G+LF + +T
Sbjct: 154 GVLFTDHLT 162
>gi|406672903|ref|ZP_11080128.1| peptide deformylase [Bergeyella zoohelcum CCUG 30536]
gi|423315649|ref|ZP_17293554.1| peptide deformylase [Bergeyella zoohelcum ATCC 43767]
gi|405585753|gb|EKB59556.1| peptide deformylase [Bergeyella zoohelcum ATCC 43767]
gi|405587447|gb|EKB61175.1| peptide deformylase [Bergeyella zoohelcum CCUG 30536]
Length = 190
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 78/128 (60%), Gaps = 11/128 (8%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGEGEEI---------VLVNPRVNKY 49
M + M+ ++GIGL+APQ+G++++L V + P+ E + E+I V +N ++ +
Sbjct: 34 MVETMHASNGIGLAAPQIGLDIRLFVVDVTPLAEDEDYEDIADELKDFKKVFINAQMIEE 93
Query: 50 SNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQG 109
+ + EGCLS P + DV+R E++ I+ D N + SD+ ARV QHE+DHL+G
Sbjct: 94 TGAEWKFNEGCLSIPDVREDVKRKETITIEYWDENFEYHKETFSDIRARVIQHEYDHLEG 153
Query: 110 ILFFERMT 117
ILF + ++
Sbjct: 154 ILFTDHLS 161
>gi|359726732|ref|ZP_09265428.1| peptide deformylase [Leptospira weilii str. 2006001855]
Length = 178
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 71/126 (56%), Gaps = 5/126 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGE----EIVLVNPRVNKYSNKMIP 55
MFD M +G+GL+APQ+GI Q++V ER G E V++NP + +
Sbjct: 38 MFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERVILNPVITSLTKDTSG 97
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+ EGCLS PG+ VERP +++ D G +F ++ A V+QHE DHL GIL+ +R
Sbjct: 98 FWEGCLSVPGMRGYVERPNKIRMQWMDERGNQFDETIDGYKAVVYQHECDHLSGILYVDR 157
Query: 116 MTDDVL 121
+ D L
Sbjct: 158 LKDTKL 163
>gi|336424008|ref|ZP_08604056.1| peptide deformylase [Lachnospiraceae bacterium 3_1_57FAA_CT1]
gi|336018556|gb|EGN48295.1| peptide deformylase [Lachnospiraceae bacterium 3_1_57FAA_CT1]
Length = 157
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 72/122 (59%), Gaps = 5/122 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +G+GL+APQVG+ +++V + GE + IVL+NPR+ + S + E GC
Sbjct: 35 MLETMYDANGVGLAAPQVGVLKRIVVIDVTGE----DPIVLINPRILETSGEQTGGE-GC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG V RP VK+ A D F + ++L AR F HE DHL G ++ E++ ++
Sbjct: 90 LSLPGKSGTVTRPHYVKVKAYDREMKPFEIEGTELLARAFCHEIDHLDGHMYVEKVEGEL 149
Query: 121 LD 122
D
Sbjct: 150 TD 151
>gi|334702671|ref|ZP_08518537.1| peptide deformylase [Aeromonas caviae Ae398]
Length = 170
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 78/129 (60%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +GIGL+A QV I+ +++V + V E E E++VL+NP + + S EEGC
Sbjct: 35 MFETMYAEEGIGLAATQVDIHQRIIVID-VSENRE-EQLVLINPEILEQSGST-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG A V R E VK+ A+D +G F + DL A QHE DHL G LF + ++
Sbjct: 92 LSVPGNRALVPRAEWVKVRAQDRHGNTFELEADDLLAICIQHEMDHLVGKLFVDYLSPLK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RQRIRQKLE 160
>gi|386359525|ref|YP_006057770.1| peptide deformylase [Thermus thermophilus JL-18]
gi|383508552|gb|AFH37984.1| peptide deformylase [Thermus thermophilus JL-18]
Length = 192
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 75/128 (58%), Gaps = 13/128 (10%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-----------IVLVNPRVNKY 49
M + M++ G+GL+APQ+G++ +L V + EGEE V+ NP V Y
Sbjct: 33 MLETMFEARGVGLAAPQIGLSQRLFVAVEYADEPEGEEEKPLRELVRRVYVVANP-VITY 91
Query: 50 SNKMIPYEEGCLSFPGIHAD-VERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
++ EGCLS PG++++ V R E ++++ +D G + + L ARVFQHE DHL
Sbjct: 92 REGLLEGTEGCLSLPGLYSEEVPRAERIRVEYQDEEGHKRVLELEGYMARVFQHEIDHLD 151
Query: 109 GILFFERM 116
GILFFER+
Sbjct: 152 GILFFERL 159
>gi|384430263|ref|YP_005639623.1| Peptide deformylase [Thermus thermophilus SG0.5JP17-16]
gi|333965731|gb|AEG32496.1| Peptide deformylase [Thermus thermophilus SG0.5JP17-16]
Length = 192
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 75/128 (58%), Gaps = 13/128 (10%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-----------IVLVNPRVNKY 49
M + M++ G+GL+APQ+G++ +L V + EGEE V+ NP V Y
Sbjct: 33 MLETMFEARGVGLAAPQIGLSQRLFVAVEYADEPEGEEERPLRELVRRVYVVANP-VITY 91
Query: 50 SNKMIPYEEGCLSFPGIHAD-VERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
++ EGCLS PG++++ V R E ++++ +D G + + L ARVFQHE DHL
Sbjct: 92 REGLLEGTEGCLSLPGLYSEEVPRAERIRVEYQDEEGHKRVLELEGYMARVFQHEIDHLD 151
Query: 109 GILFFERM 116
GILFFER+
Sbjct: 152 GILFFERL 159
>gi|302380585|ref|ZP_07269050.1| peptide deformylase [Finegoldia magna ACS-171-V-Col3]
gi|417925962|ref|ZP_12569375.1| peptide deformylase [Finegoldia magna SY403409CC001050417]
gi|302311528|gb|EFK93544.1| peptide deformylase [Finegoldia magna ACS-171-V-Col3]
gi|341590564|gb|EGS33802.1| peptide deformylase [Finegoldia magna SY403409CC001050417]
Length = 162
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 80/130 (61%), Gaps = 9/130 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
MF+ MY+ GIGL+ QVG+ +++V + E G+ +VL+NP++ K +K I E G
Sbjct: 35 MFETMYENKGIGLACVQVGMLKRIVVIDMQDEDGK---MVLINPKIIEKSEDKQINIE-G 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS PG + VERP++V ++ D+NG V+ +D A F HE DHL G+L+ TD
Sbjct: 91 CLSVPGKNGYVERPKTVVVEYTDLNGNTQRVTGTDYKAHCFCHELDHLDGVLY----TDK 146
Query: 120 VLDSIREQLE 129
VL+ E++E
Sbjct: 147 VLNLSEEEVE 156
>gi|449144818|ref|ZP_21775630.1| polypeptide deformylase [Vibrio mimicus CAIM 602]
gi|449079603|gb|EMB50525.1| polypeptide deformylase [Vibrio mimicus CAIM 602]
Length = 168
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 77/131 (58%), Gaps = 9/131 (6%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ D +Y TD GIGL+APQVG ++V + R E +VL+NP+V SNK + +EG
Sbjct: 34 LLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNRDE--PMVLINPKVVSGSNKEMG-QEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +ADVER SV ++A D +G + SD A V QHE DHL G LF D
Sbjct: 91 CLSVPDYYADVERYTSVVVEALDRDGKPLKIESSDFLAIVMQHEIDHLSGNLFI-----D 145
Query: 120 VLDSIREQLEI 130
L +++Q+ +
Sbjct: 146 YLSQLKQQMAM 156
>gi|303233917|ref|ZP_07320566.1| peptide deformylase [Finegoldia magna BVS033A4]
gi|302494842|gb|EFL54599.1| peptide deformylase [Finegoldia magna BVS033A4]
Length = 162
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 80/130 (61%), Gaps = 9/130 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
MF+ MY+ GIGL+ QVG+ +++V + E G+ +VL+NP++ K +K I E G
Sbjct: 35 MFETMYENKGIGLACVQVGMLKRIVVIDMQDEDGK---MVLINPKIIEKSEDKQINIE-G 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS PG + VERP++V ++ D+NG V+ +D A F HE DHL G+L+ TD
Sbjct: 91 CLSVPGKNGYVERPKTVVVEYTDLNGNTQRVTGTDYKAHCFCHELDHLDGVLY----TDK 146
Query: 120 VLDSIREQLE 129
VL+ E++E
Sbjct: 147 VLNLSEEEVE 156
>gi|418464033|ref|ZP_13034975.1| peptide deformylase [Aggregatibacter actinomycetemcomitans RhAA1]
gi|359757374|gb|EHK91528.1| peptide deformylase [Aggregatibacter actinomycetemcomitans RhAA1]
Length = 170
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ GIGL+APQV I +++ + G++ ++VL+NP + + S EEGC
Sbjct: 35 MFDTMYQEGGIGLAAPQVDILQRIITIDIEGDKQN--QLVLINPEILE-SEGETGIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG A V R E V + A D +G F++ L A QHE DHL GILF + ++
Sbjct: 92 LSIPGFRALVPRKEKVTVKALDRHGKEFTLKADGLLAICIQHEIDHLNGILFVDYLSPLK 151
Query: 121 LDSIREQL 128
IRE+L
Sbjct: 152 RQRIREKL 159
>gi|323456767|gb|EGB12633.1| hypothetical protein AURANDRAFT_14540, partial [Aureococcus
anophagefferens]
Length = 181
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 76/132 (57%), Gaps = 3/132 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGER-GEGEEIVLVNPRVNKYSNKMIPYEEG 59
M +MY+ DG+GL+A QVG+ + V+NP G+R + E ++VNPR+ KY EEG
Sbjct: 44 MMSIMYQADGVGLAATQVGLWKRFFVYNPTGDRLMKPYERIVVNPRITKYGEATADEEEG 103
Query: 60 CLSFPGIHAD--VERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLS + + R + ++ D + + LS ARVFQHE+DH++G+L +R++
Sbjct: 104 CLSSRSENCAGVIRRSLDIWVEYVDERNKKRTKKLSGFEARVFQHEYDHIEGVLHIDRLS 163
Query: 118 DDVLDSIREQLE 129
+ + +LE
Sbjct: 164 PEDRAKVEPELE 175
>gi|254487738|ref|ZP_05100943.1| peptide deformylase [Roseobacter sp. GAI101]
gi|214044607|gb|EEB85245.1| peptide deformylase [Roseobacter sp. GAI101]
Length = 174
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 69/129 (53%), Gaps = 6/129 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M MY GIGL+APQ+G+ +L+V + V E GE +++ NP V S+ YEEG
Sbjct: 36 MLATMYDAPGIGLAAPQIGVLNRLIVMDCVKEEGEKPRPLIMFNPEVIASSDIESTYEEG 95
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P ADV RP V + D +G + + S L A QHE DHL G LF D
Sbjct: 96 CLSIPDQFADVTRPAEVDVRWIDRDGNEHTETFSKLWATCVQHEIDHLDGKLFI-----D 150
Query: 120 VLDSIREQL 128
L +R Q+
Sbjct: 151 YLKPLRRQM 159
>gi|300722039|ref|YP_003711319.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061]
gi|297628536|emb|CBJ89108.1| peptide deformylase [Xenorhabdus nematophila ATCC 19061]
Length = 168
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 75/118 (63%), Gaps = 4/118 (3%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
M + MY TD GIGL+APQVG ++V + +R + VLVNP++ + +++ +EG
Sbjct: 34 MLETMYATDNGIGLAAPQVGRKEAVLVIDLSPDRDKP--TVLVNPKIVEKERRVV-NQEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLS PG +ADVER E VK++A D G + ++ D + V QHE DHL G++F + ++
Sbjct: 91 CLSIPGYYADVERFEKVKVEAFDRQGNQTTIESEDFLSIVMQHEIDHLNGVIFIDYLS 148
>gi|393771423|ref|ZP_10359895.1| peptide deformylase [Novosphingobium sp. Rr 2-17]
gi|392723187|gb|EIZ80580.1| peptide deformylase [Novosphingobium sp. Rr 2-17]
Length = 189
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 73/137 (53%), Gaps = 20/137 (14%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE--------------------IV 40
MF+ MY GIGL+A QVG+ ++++V + E E EE V
Sbjct: 35 MFETMYDAPGIGLAAIQVGVPLRVLVIDLQPEDDEAEEELCEAHGGHAHYHKPTKREPRV 94
Query: 41 LVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVF 100
+NP + S I Y+EGCLS P I+ADVERP S++ +D++G + L A
Sbjct: 95 FINPEILDPSEDYIVYQEGCLSVPEIYADVERPASIRARWQDLDGNAHEEDMEGLMAICL 154
Query: 101 QHEFDHLQGILFFERMT 117
QHE DHL+G+LF + ++
Sbjct: 155 QHEMDHLEGVLFIDHLS 171
>gi|415915652|ref|ZP_11553890.1| Peptide deformylase [Herbaspirillum frisingense GSF30]
gi|407761641|gb|EKF70663.1| Peptide deformylase [Herbaspirillum frisingense GSF30]
Length = 172
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+A QV ++ Q++V + V + G+ + V +NP + S + Y+EGC
Sbjct: 35 MAETMYAAPGVGLAATQVDVHEQVVVID-VSDEGKNLQ-VFINPEILWASEEKRVYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+ VERP VK+ A D +G F + DL A QHE DHL+G +F E ++
Sbjct: 93 LSVPGIYDGVERPARVKVRAFDADGKAFELDADDLLAVCIQHEMDHLKGKVFVEYLSPLK 152
Query: 121 LDSIREQLE 129
+ I+ +L+
Sbjct: 153 RNRIKTKLQ 161
>gi|414165106|ref|ZP_11421353.1| peptide deformylase [Afipia felis ATCC 53690]
gi|410882886|gb|EKS30726.1| peptide deformylase [Afipia felis ATCC 53690]
Length = 189
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 67/117 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV + ++L+ + + GE E V +NP + S+ + YEEGC
Sbjct: 53 MFETMYDAPGIGLAAIQVAVPLRLITMDLAKKEGETEPRVFINPEILSKSDDLSVYEEGC 112
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P + +VER SV++ D++G L A QHE DHL G+LF + ++
Sbjct: 113 LSIPEYYEEVERAASVRVRFMDLDGKVHEEDAEGLYATCIQHEIDHLNGVLFIDYLS 169
>gi|373857266|ref|ZP_09600008.1| peptide deformylase [Bacillus sp. 1NLA3E]
gi|372452916|gb|EHP26385.1| peptide deformylase [Bacillus sp. 1NLA3E]
Length = 161
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+G+ ++ + + E G E L+NP V + S + EGC
Sbjct: 35 MYDTMIEFDGVGLAAPQIGLKQRIAIVDIDDELGTVE---LINPEVVEASGEQTG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LSFPG++ +V RP +K+ A++ G F + AR QHE DHL GILF ++T
Sbjct: 91 LSFPGLYGEVTRPNFIKVAAQNRKGKAFVLEAEGFLARAIQHEIDHLNGILFTSKVT 147
>gi|319790017|ref|YP_004151650.1| peptide deformylase [Thermovibrio ammonificans HB-1]
gi|317114519|gb|ADU97009.1| peptide deformylase [Thermovibrio ammonificans HB-1]
Length = 177
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 76/119 (63%), Gaps = 3/119 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN-PVGERGEGEE-IVLVNPRVNKYSNKMIPYEE 58
MF+ MYK G+GL+A QVG+ ++++ + G +G+ IVLVNP + +++ EE
Sbjct: 33 MFETMYKRGGVGLAANQVGVLKRVLILDLKAGTEEQGKNPIVLVNPEIVASEGEVVK-EE 91
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
GCLS PG++ V+R + VK+ A++++G + L AR QHE DHL G++F +R++
Sbjct: 92 GCLSLPGLYRKVKRAQWVKVKAQNLDGEEIEIEGEGLLARALQHEIDHLNGVVFIDRLS 150
>gi|325955519|ref|YP_004239179.1| peptide deformylase [Weeksella virosa DSM 16922]
gi|323438137|gb|ADX68601.1| Peptide deformylase [Weeksella virosa DSM 16922]
Length = 190
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 16/139 (11%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERG---------EGEEIVLVNPRVNKY 49
MFD MY ++G+GL+APQ+G ++++ V + P E E + + +NP+ +
Sbjct: 34 MFDTMYDSNGVGLAAPQIGKSIRMFVVDCRPFAEDEDNDEEKETLENFKKIFINPKKIET 93
Query: 50 SNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQG 109
+ EGCLS P IH DV RP+ + + D N + S + LPARV QHE+DHL G
Sbjct: 94 FGDDWKFTEGCLSIPNIHEDVTRPDGITLTYLDENFVEHTESFTGLPARVIQHEYDHLDG 153
Query: 110 ILFFERMTDDVLDSIREQL 128
LF D L S +++L
Sbjct: 154 KLFI-----DYLSSFKKKL 167
>gi|398333777|ref|ZP_10518482.1| peptide deformylase [Leptospira alexanderi serovar Manhao 3 str. L
60]
Length = 155
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 5/134 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGE----EIVLVNPRVNKYSNKMIP 55
MFD M +G+GL+APQ+GI Q++V ER G E V++NP + +
Sbjct: 15 MFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERVILNPVITPLTKDTSG 74
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+ EGCLS PG+ VERP +++ D G +F ++ A V+QHE DHL GIL+ +R
Sbjct: 75 FWEGCLSVPGMRGYVERPNKIRMQWMDEKGNQFDETIDGYKAVVYQHECDHLSGILYVDR 134
Query: 116 MTDDVLDSIREQLE 129
+ D L + L+
Sbjct: 135 LKDTKLFGFNDTLD 148
>gi|319406474|emb|CBI80115.1| polypeptide deformylase [Bartonella sp. 1-1C]
Length = 176
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 71/124 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QVG+ ++++V + + +V++NP + S++ Y+EGC
Sbjct: 35 MLETMYNAQGIGLAAVQVGVPLRMLVVDIHPKDAPKNPLVIINPEILWVSDERSVYKEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P A+VERP+ + + RD G + + +DL A QHE DHL G LF + ++
Sbjct: 95 LSIPDYFAEVERPKCLCMCYRDREGKQVEIEANDLLATCLQHEIDHLNGCLFIDHISKTK 154
Query: 121 LDSI 124
D +
Sbjct: 155 RDMV 158
>gi|295706332|ref|YP_003599407.1| peptide deformylase [Bacillus megaterium DSM 319]
gi|384045165|ref|YP_005493182.1| peptide deformylase 1 [Bacillus megaterium WSH-002]
gi|294803991|gb|ADF41057.1| peptide deformylase [Bacillus megaterium DSM 319]
gi|345442856|gb|AEN87873.1| Peptide deformylase 1 [Bacillus megaterium WSH-002]
Length = 157
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 71/117 (60%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D+M + DG+GL+APQVG+ Q+ V + G+ I L+NP + + + I EGC
Sbjct: 35 MYDLMLEADGVGLAAPQVGVLQQVAVVDVDDRHGK---IELINPVIIEQRGEQIG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LSFPG+ DV R + VK+ A++ G + + AR QHE DHL G+LF E++T
Sbjct: 91 LSFPGLFGDVARADYVKVRAQNRKGKPYFIEAKGFLARAIQHEIDHLHGVLFTEKVT 147
>gi|221633590|ref|YP_002522816.1| peptide deformylase [Thermomicrobium roseum DSM 5159]
gi|254767609|sp|B9L0C1.1|DEF_THERP RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|221156095|gb|ACM05222.1| peptide deformylase [Thermomicrobium roseum DSM 5159]
Length = 176
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 73/122 (59%), Gaps = 5/122 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVF----NPVGERGEGEEIVLVNPRVNKYSNKMIPY 56
++D + G+GL+APQ+G+ +++V + V E G E+ L+NP + + S + +
Sbjct: 35 LWDTVRAARGLGLAAPQIGVLRRIIVVAIPPDYVEEGDPGVELTLINPEIVRASGRQVGL 94
Query: 57 EEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
E GCLS PG + +V R V + A D++G V S L ARV QHE DHL+GILF +R+
Sbjct: 95 E-GCLSIPGWYGEVPRSMHVTVKALDLDGREVRVKGSGLLARVLQHEIDHLEGILFVDRI 153
Query: 117 TD 118
D
Sbjct: 154 ED 155
>gi|189347171|ref|YP_001943700.1| peptide deformylase [Chlorobium limicola DSM 245]
gi|238692163|sp|B3EE19.1|DEF_CHLL2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|189341318|gb|ACD90721.1| peptide deformylase [Chlorobium limicola DSM 245]
Length = 185
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 76/131 (58%), Gaps = 3/131 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGEGEEIVLVNPRVNKYSNKMIPYEE 58
MF+ MY GIGL+APQVG +++L+V + + E + +V++NP + EE
Sbjct: 34 MFETMYSAPGIGLAAPQVGRSLRLLVLDISCMREYANVKPMVVINPEIVAVKGYR-SMEE 92
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
GCLS PG+ DV RP S+ ++ RD + + S L ARV QHE DHL G LF +R+
Sbjct: 93 GCLSLPGLQGDVVRPSSISLNYRDEHFEGQNAEFSGLLARVLQHEIDHLDGRLFVDRLQK 152
Query: 119 DVLDSIREQLE 129
++++L+
Sbjct: 153 KERRKVQKELD 163
>gi|77359005|ref|YP_338580.1| peptide deformylase [Pseudoalteromonas haloplanktis TAC125]
gi|123587108|sp|Q3IDI2.1|DEF_PSEHT RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|76873916|emb|CAI85137.1| N-terminal methionine peptide deformylase [Pseudoalteromonas
haloplanktis TAC125]
Length = 167
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+A QV I+ +++V + ER E +VL+NP++ K + EEGC
Sbjct: 35 MLETMYDENGIGLAATQVNIHQRIVVIDVSEERNEP--LVLINPQIIKKDGTTVS-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P +A V+R E+V + A + G F + +L A QHE DHLQG LF + ++
Sbjct: 92 LSVPNSYAKVDRAETVTVAALNEQGEEFVLDADELLAICIQHELDHLQGKLFIDYLSPLK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RQRIRKKLE 160
>gi|417777962|ref|ZP_12425774.1| peptide deformylase [Leptospira weilii str. 2006001853]
gi|410781932|gb|EKR66499.1| peptide deformylase [Leptospira weilii str. 2006001853]
Length = 170
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 71/126 (56%), Gaps = 5/126 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGE----EIVLVNPRVNKYSNKMIP 55
MFD M +G+GL+APQ+GI Q++V ER G E V++NP + +
Sbjct: 30 MFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERVILNPVITSLTKDTSG 89
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+ EGCLS PG+ VERP +++ D G +F ++ A V+QHE DHL GIL+ +R
Sbjct: 90 FWEGCLSVPGMRGYVERPNKIRMQWMDERGNQFDETIDGYKAVVYQHECDHLSGILYVDR 149
Query: 116 MTDDVL 121
+ D L
Sbjct: 150 LKDTKL 155
>gi|421750133|ref|ZP_16187425.1| peptide deformylase [Cupriavidus necator HPC(L)]
gi|409770869|gb|EKN53367.1| peptide deformylase [Cupriavidus necator HPC(L)]
Length = 168
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+A QV ++ Q++V + R E V +NP + S+ +EEGC
Sbjct: 35 MAETMYEAPGIGLAATQVDVHEQVIVIDISETRDELR--VFINPEIVWASDNRKVWEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P ++ VERP+ V++ A + NG F + DL A QHE DHL+G +F E ++
Sbjct: 93 LSVPEVYDRVERPDRVRVRALNENGETFELEADDLLAVCIQHEMDHLKGKVFVEYLSPLK 152
Query: 121 LDSIREQLE 129
L+ I+ +L+
Sbjct: 153 LNRIKSKLQ 161
>gi|33242441|ref|NP_877382.1| peptide deformylase [Chlamydophila pneumoniae TW-183]
gi|33236952|gb|AAP99039.1| polypeptide deformylase [Chlamydophila pneumoniae TW-183]
Length = 204
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M D M G+GL+APQVG NV L V E +GE I V +NP ++ S I
Sbjct: 52 MCDTMEAHRGVGLAAPQVGKNVSLFVMCVDRETEDGELIFSESPRVFINPVLSDPSETPI 111
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
+EGCLS PG+ +V RP+ + + A D+NG F+ L AR+ HE DHL G+L+ +
Sbjct: 112 IGKEGCLSIPGLRGEVFRPQKITVTAMDLNGKIFTEHLEGFTARIIMHETDHLNGVLYID 171
Query: 115 RM 116
M
Sbjct: 172 LM 173
>gi|395493026|ref|ZP_10424605.1| N-formylmethionyl-tRNA deformylase [Sphingomonas sp. PAMC 26617]
gi|404253351|ref|ZP_10957319.1| N-formylmethionyl-tRNA deformylase [Sphingomonas sp. PAMC 26621]
Length = 176
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-------IVLVNPRVNKYSNKM 53
MFD MY GIGL+A QV I +++V + GEGE+ +V +NP + S +
Sbjct: 35 MFDTMYDARGIGLAATQVAIEQRIVVIDLQETEGEGEDAKPVKNPLVFINPELLSVSEET 94
Query: 54 IPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFF 113
Y EGCLS P +ADVERP + D G R + L A QHE DHL G+LF
Sbjct: 95 SFYAEGCLSIPEQYADVERPARCRAAWLDEQGTRQEGDMDGLLATALQHEIDHLNGVLFI 154
Query: 114 ERMTDDVLDSIREQL 128
+ ++ D + ++L
Sbjct: 155 DHISKLKRDMLMKKL 169
>gi|261405798|ref|YP_003242039.1| peptide deformylase [Paenibacillus sp. Y412MC10]
gi|261282261|gb|ACX64232.1| peptide deformylase [Paenibacillus sp. Y412MC10]
Length = 164
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY +G+GL+APQVGI +L+V + E G I ++NP + + + EGC
Sbjct: 35 MADTMYDAEGVGLAAPQVGILKRLIVIDAGDEHGL---IKMINPEIVESEGEQFG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + DV R E V + D G ++ + L AR FQHE DHL G+LF E + D V
Sbjct: 91 LSIPGWNGDVRRAEKVTVKGLDREGNELVITGTGLLARAFQHEIDHLNGVLFTE-IADRV 149
Query: 121 LDSIREQ 127
+ + EQ
Sbjct: 150 YEYVPEQ 156
>gi|90415408|ref|ZP_01223342.1| polypeptide deformylase [gamma proteobacterium HTCC2207]
gi|90332731|gb|EAS47901.1| polypeptide deformylase [marine gamma proteobacterium HTCC2207]
Length = 168
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 72/129 (55%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD M GIGL+A Q+ ++++++V N +GE G V +NP + + PYEEGC
Sbjct: 35 MFDTMKDAQGIGLAATQIDVHLRVIVMN-LGEDDIGPR-VFINPEIEPLDESVDPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + V+RP V I A D G F L A QHE DHL+G LF + ++
Sbjct: 93 LSVPGFYEKVDRPAHVVIRALDGEGKAFKEEARGLLAVCIQHEIDHLEGKLFVDYLSPFK 152
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 153 RQRIRKKLE 161
>gi|86137255|ref|ZP_01055833.1| peptide deformylase [Roseobacter sp. MED193]
gi|85826579|gb|EAQ46776.1| peptide deformylase [Roseobacter sp. MED193]
Length = 168
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 65/117 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY G GL+APQVG+ +L V + + G +V++NP + +EGC
Sbjct: 33 MFETMYAAPGRGLAAPQVGVLKRLFVMDATWKEAPGTPLVMINPEFLSVGADLESGDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PG+ V RP++V + +D + S S AR QHE+DHL+G++ R+T
Sbjct: 93 LSIPGVLTSVPRPKTVSLRWQDQDRNWTSGSFDGFAARCIQHEYDHLEGLVTLNRLT 149
>gi|154249636|ref|YP_001410461.1| peptide deformylase [Fervidobacterium nodosum Rt17-B1]
gi|154153572|gb|ABS60804.1| peptide deformylase [Fervidobacterium nodosum Rt17-B1]
Length = 170
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 77/126 (61%), Gaps = 5/126 (3%)
Query: 4 VMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSF 63
MY+ DG+GL+APQVGI+++ + G G +++ VNP + + S + EEGCLS
Sbjct: 34 TMYEQDGVGLAAPQVGISLRFFGMDD----GSGFKMI-VNPEIIEKSEEKELGEEGCLSV 88
Query: 64 PGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDS 123
PG+ ADV R + +++ +D +G L PAR+FQHE+DHL G+LF + + +
Sbjct: 89 PGVFADVLRHKWIRVRYQDEHGTYHEELLEGYPARIFQHEYDHLDGVLFIDHLDSKTRTA 148
Query: 124 IREQLE 129
+ +QL+
Sbjct: 149 LAQQLK 154
>gi|86356069|ref|YP_467961.1| peptide deformylase [Rhizobium etli CFN 42]
gi|86280171|gb|ABC89234.1| peptide deformylase protein [Rhizobium etli CFN 42]
Length = 171
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 66/117 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E + V +NP + K S+ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDDRSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP +V + D G V L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPATVSVKYLDREGKEQMVEADGLLATCLQHEIDHLNGVLFIDHIS 151
>gi|329926582|ref|ZP_08280995.1| peptide deformylase [Paenibacillus sp. HGF5]
gi|328939123|gb|EGG35486.1| peptide deformylase [Paenibacillus sp. HGF5]
Length = 164
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY +G+GL+APQVGI +L+V + E G I ++NP + + + EGC
Sbjct: 35 MADTMYDAEGVGLAAPQVGILKRLIVIDAGDEHGL---IKMINPEIVESEGEQFG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + DV R E V + D G ++ + L AR FQHE DHL G+LF E + D V
Sbjct: 91 LSIPGWNGDVRRAEKVTVKGLDREGNELVITGTGLLARAFQHEIDHLNGVLFTE-IADRV 149
Query: 121 LDSIREQ 127
+ + EQ
Sbjct: 150 YEYVPEQ 156
>gi|293393278|ref|ZP_06637592.1| peptide deformylase [Serratia odorifera DSM 4582]
gi|291424188|gb|EFE97403.1| peptide deformylase [Serratia odorifera DSM 4582]
Length = 169
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY +GIGL+A QV I+ +++V + R + +VL+NP + + S + EEGC
Sbjct: 35 MFDTMYAEEGIGLAATQVDIHQRIIVIDVSETRDQ--RLVLINPELLEQSGET-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P A V R E VKI A D NG F ++ DL A QHE DHL G LF + ++
Sbjct: 92 LSIPEQRALVPRAEKVKIRALDYNGNSFELAADDLLAICIQHEMDHLVGKLFVDYLSPLK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RQRIRQKLE 160
>gi|414168993|ref|ZP_11424830.1| peptide deformylase [Afipia clevelandensis ATCC 49720]
gi|410885752|gb|EKS33565.1| peptide deformylase [Afipia clevelandensis ATCC 49720]
Length = 172
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 66/117 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY GIGL+A QV + ++L+ + + GE E V +NP + S+++ YEEGC
Sbjct: 36 MFQTMYDAPGIGLAAIQVAVPLRLITMDLSKKEGEKEPRVFINPEILASSDELSVYEEGC 95
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P + +VERP V++ D+ G L A QHE DHL G+LF + ++
Sbjct: 96 LSIPEYYEEVERPARVRVRFMDLEGVTREEDAEGLYATCIQHEIDHLNGVLFVDYLS 152
>gi|373114090|ref|ZP_09528307.1| peptide deformylase [Fusobacterium necrophorum subsp. funduliforme
1_1_36S]
gi|371652977|gb|EHO18383.1| peptide deformylase [Fusobacterium necrophorum subsp. funduliforme
1_1_36S]
Length = 136
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 74/125 (59%), Gaps = 1/125 (0%)
Query: 5 MYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFP 64
MY DG+GL+APQVGI++++ V + +G E ++NP + + + I EEGCLS P
Sbjct: 1 MYARDGVGLAAPQVGISLRMFVCD-IGSPEESNVKKIINPLITPLTEETISVEEGCLSIP 59
Query: 65 GIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSI 124
GI+ VER +K++ ++ G L PA V QHE+DHL+ LF +R++ I
Sbjct: 60 GIYKKVERIAKLKLEYQNEQGEFVEEILEGFPAIVVQHEYDHLEATLFVDRVSPMAKRMI 119
Query: 125 REQLE 129
++L+
Sbjct: 120 AKKLQ 124
>gi|409399293|ref|ZP_11249612.1| peptide deformylase [Acidocella sp. MX-AZ02]
gi|409131533|gb|EKN01233.1| peptide deformylase [Acidocella sp. MX-AZ02]
Length = 177
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MYK GIGL+A Q+ ++++V + V + E + L+NP + S+++ EEGC
Sbjct: 43 MFATMYKAPGIGLAANQINSLLRVIVID-VAPKDEPAPLALINPEIIAKSDELATQEEGC 101
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P ++A++ RP VK+ +D+ G + + L + QHE DHL G+LF + ++
Sbjct: 102 LSIPDLYAEITRPARVKVRYQDLQGVKQEIEAEGLLSACLQHEIDHLNGVLFVDYLS 158
>gi|393724796|ref|ZP_10344723.1| N-formylmethionyl-tRNA deformylase [Sphingomonas sp. PAMC 26605]
Length = 176
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-------IVLVNPRVNKYSNKM 53
MFD MY GIGL+A QVGI +++V + GEGE+ +V +NP + S +
Sbjct: 35 MFDTMYDARGIGLAATQVGIEQRIVVIDLQETEGEGEDAKPVRSPLVYINPELISVSEET 94
Query: 54 IPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFF 113
Y EGCLS P +A+VERP S + D GA L A QHE DHL G+LF
Sbjct: 95 SFYNEGCLSIPEQYAEVERPTSCRARWLDEQGAAQEGDFDGLLATALQHEIDHLNGVLFI 154
Query: 114 ERMTDDVLDSIREQL 128
+ ++ D + ++L
Sbjct: 155 DHISKLKRDMLLKKL 169
>gi|384098422|ref|ZP_09999538.1| peptide deformylase [Imtechella halotolerans K1]
gi|383835679|gb|EID75102.1| peptide deformylase [Imtechella halotolerans K1]
Length = 196
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 74/129 (57%), Gaps = 12/129 (9%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGE----------RGEGEEIVLVNPRVNK 48
M D MY G+GL+APQ+G+ ++L V + P E +G + V VNP + +
Sbjct: 34 MMDTMYGAYGVGLAAPQIGLALRLFVIDASPFAEDEDLSEEEQKELQGFKKVFVNPIILE 93
Query: 49 YSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
S + EGCLS P I DV R E+V+I +D N F + S L ARV QHE+DH++
Sbjct: 94 ESGNEWAFNEGCLSIPDIREDVFRKETVRIRYQDENFQTFEETYSGLAARVIQHEYDHIE 153
Query: 109 GILFFERMT 117
G+LF ++++
Sbjct: 154 GVLFTDKLS 162
>gi|372211170|ref|ZP_09498972.1| peptide deformylase [Flavobacteriaceae bacterium S85]
Length = 195
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 81/141 (57%), Gaps = 12/141 (8%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGEG----EEI------VLVNPRVNK 48
M++ M G+GL+APQ+G +++L V + P E E +E+ V +NP++ K
Sbjct: 34 MWETMENAHGVGLAAPQIGKSIRLFVIDATPFAEDEENTPEEKEVLSNFRKVFINPKIVK 93
Query: 49 YSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
P+EEGCLS P + DV R E+V I ++ N L+ L ARVFQHE+DH++
Sbjct: 94 EEGDEWPFEEGCLSIPEVREDVYRQETVHITYQNENFESKKEILTGLAARVFQHEYDHIE 153
Query: 109 GILFFERMTDDVLDSIREQLE 129
G+LF ++++ I+ +LE
Sbjct: 154 GVLFTDKISSLKKRLIKRKLE 174
>gi|400755848|ref|YP_006564216.1| peptide deformylase Def [Phaeobacter gallaeciensis 2.10]
gi|398655001|gb|AFO88971.1| peptide deformylase Def [Phaeobacter gallaeciensis 2.10]
Length = 169
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 63/117 (53%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY G GL+APQVG+ ++L V + + G + +V VNP + S + EGC
Sbjct: 34 MLDTMYAAPGRGLAAPQVGVLIRLFVMDTTWKEGTRDPLVCVNPDIVALSAETATMSEGC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS G+ +V RP V + D+ G R A QHE+DHL+G + F+R++
Sbjct: 94 LSIKGVSLEVTRPAWVDLAWSDLQGVRHQRRFEGFAAACVQHEYDHLEGRVTFDRVS 150
>gi|260583339|ref|ZP_05851112.1| peptide deformylase [Haemophilus influenzae NT127]
gi|260093610|gb|EEW77525.1| peptide deformylase [Haemophilus influenzae NT127]
Length = 169
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 73/128 (57%), Gaps = 3/128 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ GIGL+APQV I +++ + G++ + VL+NP + S EEGC
Sbjct: 35 MFDTMYQEKGIGLAAPQVDILQRIITIDVEGDKQN--QFVLINPEI-LASEGETGIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG A V R E VK+ A D +G F++ L A QHE DHL GILF + ++
Sbjct: 92 LSIPGFRALVPRKEKVKVRALDRDGKEFTLDADGLLAICIQHEIDHLNGILFVDYLSPLK 151
Query: 121 LDSIREQL 128
I+E+L
Sbjct: 152 RQRIKEKL 159
>gi|229918580|ref|YP_002887226.1| methionyl-tRNA formyltransferase [Exiguobacterium sp. AT1b]
gi|229470009|gb|ACQ71781.1| methionyl-tRNA formyltransferase [Exiguobacterium sp. AT1b]
Length = 466
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 71/117 (60%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
+FD MY+ DG+G++APQV +N +L V + E G +VL+NP + + S + + E GC
Sbjct: 33 LFDTMYEYDGVGVAAPQVNLNQRLAVVHTDDETGP---LVLINPEIIETSGREVGLE-GC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PG VER ES+ + +D+ G ++ S AR QHE DHL G+LF +++
Sbjct: 89 LSIPGEFGFVERHESIVVKNQDVKGRTHTIQASGFFARAIQHEMDHLDGVLFTDKLA 145
>gi|209886650|ref|YP_002290507.1| peptide deformylase [Oligotropha carboxidovorans OM5]
gi|337739837|ref|YP_004631565.1| peptide deformylase Def [Oligotropha carboxidovorans OM5]
gi|386028855|ref|YP_005949630.1| peptide deformylase Def [Oligotropha carboxidovorans OM4]
gi|229487488|sp|B6JJP8.1|DEF_OLICO RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|209874846|gb|ACI94642.1| peptide deformylase [Oligotropha carboxidovorans OM5]
gi|336093923|gb|AEI01749.1| peptide deformylase Def [Oligotropha carboxidovorans OM4]
gi|336097501|gb|AEI05324.1| peptide deformylase Def [Oligotropha carboxidovorans OM5]
Length = 171
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 65/117 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV + ++L+ + + GE V +NP + S + YEEGC
Sbjct: 35 MFETMYDAPGIGLAAIQVAVPLRLITMDLAKKEGESAPRVFINPEILSKSEDIAVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P + +VERP SV++ D+ G L A QHE DHL G+LF + ++
Sbjct: 95 LSIPEYYEEVERPASVRVRFMDLEGEVHEEDAEGLFATCIQHEIDHLNGVLFIDYLS 151
>gi|430001987|emb|CCF17767.1| Peptide deformylase (PDF) (Polypeptide deformylase) [Rhizobium sp.]
Length = 170
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 69/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +L+V + E + + +NP++ S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRLLVIDVSKEDEDKAPQLFINPQIVASSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP +V +D D G + ++ L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAAVTVDYIDREGKQQTLQADGLLATCLQHEIDHLNGVLFIDHIS 151
>gi|251793801|ref|YP_003008533.1| peptide deformylase [Aggregatibacter aphrophilus NJ8700]
gi|422337241|ref|ZP_16418213.1| peptide deformylase [Aggregatibacter aphrophilus F0387]
gi|247535200|gb|ACS98446.1| peptide deformylase [Aggregatibacter aphrophilus NJ8700]
gi|353345793|gb|EHB90084.1| peptide deformylase [Aggregatibacter aphrophilus F0387]
Length = 170
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 75/128 (58%), Gaps = 3/128 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+APQV I +++ + G++ ++VL+NP + + S EEGC
Sbjct: 35 MFDTMYQEEGIGLAAPQVDILQRIITIDIEGDKQN--QLVLINPEILE-SEGETGIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG A V R E V + A D +G F++ L A QHE DHL GILF + ++
Sbjct: 92 LSIPGFRALVPRKEKVTVRALDRDGKEFTLKADRLLAICIQHEIDHLNGILFVDYLSPLK 151
Query: 121 LDSIREQL 128
I+E+L
Sbjct: 152 RQRIKEKL 159
>gi|189502648|ref|YP_001958365.1| hypothetical protein Aasi_1326 [Candidatus Amoebophilus asiaticus
5a2]
gi|238692315|sp|B3ETT4.1|DEF_AMOA5 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|189498089|gb|ACE06636.1| hypothetical protein Aasi_1326 [Candidatus Amoebophilus asiaticus
5a2]
Length = 188
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 74/136 (54%), Gaps = 7/136 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEG------EEIVLVNPRVNKYS-NKM 53
MF M G+GL+APQ+G ++QL V + G+G V +NP + Y N +
Sbjct: 33 MFITMNAAKGLGLAAPQIGKSIQLFVVDVSPFVGDGMVQPDKHRKVYINPVLEIYQPNTI 92
Query: 54 IPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFF 113
YEEGCLS PGI+ DV R + V+I D N L D+PARV QHE+DHL G L
Sbjct: 93 THYEEGCLSIPGIYVDVPRNKRVRIKFFDRNWQAQEEDLVDMPARVVQHEYDHLYGKLHI 152
Query: 114 ERMTDDVLDSIREQLE 129
+ + D ++ +LE
Sbjct: 153 DYLRADRRLRLKSKLE 168
>gi|77464452|ref|YP_353956.1| peptide deformylase [Rhodobacter sphaeroides 2.4.1]
gi|126463292|ref|YP_001044406.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
gi|221640344|ref|YP_002526606.1| peptide deformylase [Rhodobacter sphaeroides KD131]
gi|332559341|ref|ZP_08413663.1| Peptide deformylase [Rhodobacter sphaeroides WS8N]
gi|77388870|gb|ABA80055.1| peptide deformylase [Rhodobacter sphaeroides 2.4.1]
gi|126104956|gb|ABN77634.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17029]
gi|221161125|gb|ACM02105.1| Peptide deformylase [Rhodobacter sphaeroides KD131]
gi|332277053|gb|EGJ22368.1| Peptide deformylase [Rhodobacter sphaeroides WS8N]
Length = 177
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGER-GEGEEIVLVNPRVNKYSNKMIPYEEG 59
M MY GIGL+APQVG+ +L+V + E G + +VNP V S + YEEG
Sbjct: 34 MLATMYDAPGIGLAAPQVGVVRRLIVLDCNKESDGARRPVAMVNPEVVWRSEDVSTYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
CLS P + ADVERP VK+ ++G + L A QHE DHL G LF +
Sbjct: 94 CLSLPNVFADVERPAEVKVRWTGLDGREEEEQFAGLWATCVQHEIDHLDGKLFID 148
>gi|375110118|ref|ZP_09756354.1| peptide deformylase [Alishewanella jeotgali KCTC 22429]
gi|397168810|ref|ZP_10492246.1| peptide deformylase [Alishewanella aestuarii B11]
gi|374569867|gb|EHR41014.1| peptide deformylase [Alishewanella jeotgali KCTC 22429]
gi|396089397|gb|EJI86971.1| peptide deformylase [Alishewanella aestuarii B11]
Length = 171
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+A QV ++++++V + ER + + V +NP + + + YEEGC
Sbjct: 35 MLETMYDENGIGLAATQVNVHLRVVVIDLSEERNQPQ--VFINPEIIAHDGET-SYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P +A V R ++V + A+DI+G F + L A QHE DHL G LF + ++
Sbjct: 92 LSVPQNYASVSRAKNVTVKAQDIDGNWFELQADGLLAICLQHELDHLIGKLFIDYLSPLK 151
Query: 121 LDSIREQLE 129
D IR++LE
Sbjct: 152 RDRIRKKLE 160
>gi|424808894|ref|ZP_18234283.1| peptide deformylase [Vibrio mimicus SX-4]
gi|342323846|gb|EGU19629.1| peptide deformylase [Vibrio mimicus SX-4]
Length = 197
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 77/131 (58%), Gaps = 9/131 (6%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ D +Y TD GIGL+APQVG ++V + R E +VL+NP+V SNK + +EG
Sbjct: 63 LLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNRDE--PMVLINPKVVSGSNKEMG-QEG 119
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +ADVER SV ++A D +G + SD A V QHE DHL G LF D
Sbjct: 120 CLSVPDYYADVERYTSVVVEALDRDGKPLKIESSDFLAIVMQHEIDHLSGNLFI-----D 174
Query: 120 VLDSIREQLEI 130
L +++Q+ +
Sbjct: 175 YLSPLKQQMAM 185
>gi|15618975|ref|NP_225261.1| peptide deformylase [Chlamydophila pneumoniae CWL029]
gi|15836598|ref|NP_301122.1| peptide deformylase [Chlamydophila pneumoniae J138]
gi|16753049|ref|NP_445322.1| peptide deformylase [Chlamydophila pneumoniae AR39]
gi|6225254|sp|Q9Z6J2.1|DEF_CHLPN RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|4377403|gb|AAD19204.1| Polypeptide Deformylase [Chlamydophila pneumoniae CWL029]
gi|7189698|gb|AAF38582.1| polypeptide deformylase [Chlamydophila pneumoniae AR39]
gi|8979440|dbj|BAA99274.1| polypeptide deformylase [Chlamydophila pneumoniae J138]
Length = 186
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 69/124 (55%), Gaps = 6/124 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI------VLVNPRVNKYSNKMI 54
M D M G+GL+APQVG NV L V E +GE I V +NP ++ S I
Sbjct: 34 MCDTMEAHRGVGLAAPQVGKNVSLFVMCVDRETEDGELIFSESPRVFINPVLSDPSETPI 93
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
+EGCLS PG+ +V RP+ + + A D+NG F+ L AR+ HE DHL G+L+ +
Sbjct: 94 IGKEGCLSIPGLRGEVFRPQKITVTAMDLNGKIFTEHLEGFTARIIMHETDHLNGVLYID 153
Query: 115 RMTD 118
M +
Sbjct: 154 LMEE 157
>gi|71279368|ref|YP_266802.1| polypeptide deformylase [Colwellia psychrerythraea 34H]
gi|71145108|gb|AAZ25581.1| polypeptide deformylase [Colwellia psychrerythraea 34H]
Length = 171
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY+ +G+GL+A QV I+ +++V + + I+ +NP + SN+ EEGC
Sbjct: 35 MLATMYEENGVGLAATQVDIHQRIVVMD--TSEDNDQPIIFINPEIIATSNETSINEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG +A V+R ++ + A D +G FS++ ++L + QHE DHL+G+LF + ++
Sbjct: 93 LSVPGTYAKVDRHDACTVKALDRHGKEFSLNATELQSICIQHELDHLKGVLFVDYLSPLK 152
Query: 121 LDSIREQLE 129
I+++LE
Sbjct: 153 RQRIQKKLE 161
>gi|262403341|ref|ZP_06079901.1| peptide deformylase [Vibrio sp. RC586]
gi|262350840|gb|EEY99973.1| peptide deformylase [Vibrio sp. RC586]
Length = 168
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 77/131 (58%), Gaps = 9/131 (6%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ D +Y TD GIGL+APQVG ++V + R E +VL+NP+V SNK + +EG
Sbjct: 34 LLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNRDE--PMVLINPKVVSGSNKEMG-QEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +ADVER SV ++A D +G + SD A V QHE DHL G LF D
Sbjct: 91 CLSVPDYYADVERYTSVVVEALDRDGKPLRIETSDFLAIVMQHEIDHLSGNLFI-----D 145
Query: 120 VLDSIREQLEI 130
L +++Q+ +
Sbjct: 146 YLSPLKQQMAM 156
>gi|194014710|ref|ZP_03053327.1| peptide deformylase [Bacillus pumilus ATCC 7061]
gi|194013736|gb|EDW23301.1| peptide deformylase [Bacillus pumilus ATCC 7061]
Length = 160
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 68/116 (58%), Gaps = 4/116 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI+ ++ V + +GE E I LVNP V + E GC
Sbjct: 35 MYDTMLELDGVGLAAPQIGISQRIAVVD-IGE--EPGRIDLVNPEVLEIKGSQTDIE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LSFP ++ VERP VK+ A D G F++ AR HE DHL GILF ++
Sbjct: 91 LSFPSLYGTVERPSYVKVKAFDKKGKPFTIEAEGFLARALLHEIDHLDGILFTSKI 146
>gi|163757845|ref|ZP_02164934.1| peptide deformylase [Hoeflea phototrophica DFL-43]
gi|162285347|gb|EDQ35629.1| peptide deformylase [Hoeflea phototrophica DFL-43]
Length = 172
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 65/117 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QVG+ +L+V + G+ V +NP V + + YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQVGVPRRLLVIDVAGKDEPKSPQVFINPEVVATGDGISVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +ADVERPE++ + +G + L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYADVERPETITVKYLGRDGKEHTTEADGLLATCLQHEIDHLNGVLFIDHIS 151
>gi|339504932|ref|YP_004692352.1| peptide deformylase [Roseobacter litoralis Och 149]
gi|338758925|gb|AEI95389.1| peptide deformylase [Roseobacter litoralis Och 149]
Length = 175
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQVGI ++ V + V E GE IV+ NP V S++ YEEG
Sbjct: 37 MLETMYDAPGIGLAAPQVGILQRVFVMDCVKEPGETPRPIVMFNPEVIATSDETNVYEEG 96
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
CLS P ADV RP V++ D +GA + + L A QHE DHL G LF +
Sbjct: 97 CLSIPEQFADVTRPADVELRWMDRDGAEQTEVFTGLWATCAQHEIDHLDGKLFID 151
>gi|345876227|ref|ZP_08828001.1| peptide deformylase [Neisseria weaveri LMG 5135]
gi|417957675|ref|ZP_12600595.1| peptide deformylase [Neisseria weaveri ATCC 51223]
gi|343966832|gb|EGV35084.1| peptide deformylase [Neisseria weaveri LMG 5135]
gi|343968008|gb|EGV36246.1| peptide deformylase [Neisseria weaveri ATCC 51223]
Length = 166
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ +GIGL+A QV ++ +++V + ER E V +NP + + + YEEGC
Sbjct: 35 MFETMYEANGIGLAATQVDVHERVVVMDLSEERNEPR--VFINPIIT-HKDGETTYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+ V R E V ++A D G +F++ L A QHE DHL G +F E ++
Sbjct: 92 LSVPGIYDTVTRAEHVIVEALDEKGQKFTLEADGLLAICIQHELDHLMGKVFVEHLSQLK 151
Query: 121 LDSIREQLE 129
+ I+ +L+
Sbjct: 152 QNRIKTKLK 160
>gi|386827620|ref|ZP_10114727.1| peptide deformylase [Beggiatoa alba B18LD]
gi|386428504|gb|EIJ42332.1| peptide deformylase [Beggiatoa alba B18LD]
Length = 167
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 74/129 (57%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV I +Q++V + E+ + I L+NP + S + EEGC
Sbjct: 35 MFETMYQARGIGLAATQVNIALQIVVIDISEEKNQP--ICLINPEITHRSGLEV-MEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ +VER E V + A + G +S L A QHE DHL+G LF + ++
Sbjct: 92 LSVPSIYDEVERAEFVTVSALNCEGEPLELSTGGLLAVCIQHELDHLEGKLFVDYLSALK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RQRIRKKLE 160
>gi|403386881|ref|ZP_10928938.1| peptide deformylase [Clostridium sp. JC122]
Length = 146
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 74/116 (63%), Gaps = 6/116 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+++G+GL+APQVGI +++V + GEG IVL+NP + + +++ E GC
Sbjct: 35 MKETMYESNGVGLAAPQVGILKRVVVVDI----GEGP-IVLINPEILESKGEVVDLE-GC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LS P H V RP+ VK+ A + +G F++ D AR F HE DHL G+L+ +++
Sbjct: 89 LSIPNEHGKVRRPQYVKVKAMNEDGEWFTIEGEDFLARAFCHEIDHLDGVLYIDKI 144
>gi|148651859|ref|YP_001278952.1| peptide deformylase [Psychrobacter sp. PRwf-1]
gi|172048436|sp|A5WBG1.1|DEF_PSYWF RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|148570943|gb|ABQ93002.1| peptide deformylase [Psychrobacter sp. PRwf-1]
Length = 176
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 67/117 (57%), Gaps = 2/117 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++QL+V + + E + V +NP+V PYEEGC
Sbjct: 35 MIETMYDAKGIGLAATQVDRHIQLIVMD-LSENNDSPR-VFINPKVTPLVEDKKPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P ++ V+RP VKI+A D +G F L A QHE DHL G+LF + ++
Sbjct: 93 LSVPDVYDSVDRPVKVKIEALDADGNAFEEIAEGLLAVCIQHEMDHLNGVLFVDYLS 149
>gi|354582477|ref|ZP_09001379.1| peptide deformylase [Paenibacillus lactis 154]
gi|353199876|gb|EHB65338.1| peptide deformylase [Paenibacillus lactis 154]
Length = 164
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 74/132 (56%), Gaps = 7/132 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY DG+GL+APQVGI +L+V + E G I ++NP + + + EGC
Sbjct: 35 MADTMYDADGVGLAAPQVGILKRLIVVDAGDEHGL---IKMINPEIIESEGEQFG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFF---ERMT 117
LS PG + DV R E V + D G V+ + L AR FQHE DHL G+LF ER+
Sbjct: 91 LSIPGWNGDVRRAEKVTVKGLDREGNELVVTGTGLLARAFQHEIDHLNGVLFTDIAERVY 150
Query: 118 DDVLDSIREQLE 129
+ + R++LE
Sbjct: 151 EYTPEQPRKELE 162
>gi|399991313|ref|YP_006571553.1| peptide deformylase Def [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
gi|398655868|gb|AFO89834.1| peptide deformylase Def [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
Length = 169
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 65/117 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G GL+APQVG+ ++L V + + G + +V VNP + S +M EGC
Sbjct: 34 MLETMYAAPGRGLAAPQVGVLIRLFVMDTTWKEGTRDPLVCVNPDIVALSVEMATMSEGC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS G+ +V RP V + D++G R A QHE+DHL+G + F+R++
Sbjct: 94 LSIKGVSLEVTRPAWVDLAWSDLHGVRHQRRFEGFAAACVQHEYDHLEGRVTFDRVS 150
>gi|325577099|ref|ZP_08147583.1| peptide deformylase [Haemophilus parainfluenzae ATCC 33392]
gi|325160681|gb|EGC72802.1| peptide deformylase [Haemophilus parainfluenzae ATCC 33392]
Length = 175
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+APQV I +++ + G++ ++VL+NP + S EEGC
Sbjct: 41 MFDTMYQEEGIGLAAPQVDILQRIITIDIEGDKQN--QLVLINPEI-LASEGETGIEEGC 97
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG A V R E V + A D +G F++ L A QHE DHL GILF + ++
Sbjct: 98 LSIPGFRALVPRKEKVTVKALDRHGKEFTLDADGLLAICIQHEIDHLNGILFVDYLSPLK 157
Query: 121 LDSIREQL 128
I+E+L
Sbjct: 158 RQRIKEKL 165
>gi|315635057|ref|ZP_07890338.1| peptide deformylase [Aggregatibacter segnis ATCC 33393]
gi|315476319|gb|EFU67070.1| peptide deformylase [Aggregatibacter segnis ATCC 33393]
Length = 170
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+APQV I +++ + G++ ++VL+NP + + EEGC
Sbjct: 35 MFDTMYQEEGIGLAAPQVDILQRIITIDIEGDKQN--QLVLINPEILDAEGET-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG A V R E V + A D +G F++ L A QHE DHL GILF + ++
Sbjct: 92 LSIPGFRALVPRKEKVTVKALDRDGKEFTLKADGLLAICIQHEIDHLNGILFVDYLSPLK 151
Query: 121 LDSIREQL 128
I+E+L
Sbjct: 152 RQRIKEKL 159
>gi|319945035|ref|ZP_08019297.1| peptide deformylase [Lautropia mirabilis ATCC 51599]
gi|319741605|gb|EFV94030.1| peptide deformylase [Lautropia mirabilis ATCC 51599]
Length = 170
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 2/128 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++ +++V + + + V +NP + S+ + YEEGC
Sbjct: 35 MAETMYAAPGIGLAATQVNVHERVVVIDITETHDQLQ--VFINPEITWSSDTLQSYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+ VERP++V + A ++G F++ L A QHE DHL G LF + ++
Sbjct: 93 LSIPGIYDKVERPDAVTVTALGLDGKPFTLEADGLLAVCIQHEIDHLNGKLFTQHLSRLK 152
Query: 121 LDSIREQL 128
+ IR+++
Sbjct: 153 QNRIRQKV 160
>gi|150007311|ref|YP_001302054.1| peptide deformylase [Parabacteroides distasonis ATCC 8503]
gi|255014064|ref|ZP_05286190.1| peptide deformylase [Bacteroides sp. 2_1_7]
gi|256839600|ref|ZP_05545109.1| polypeptide deformylase [Parabacteroides sp. D13]
gi|262382116|ref|ZP_06075254.1| polypeptide deformylase [Bacteroides sp. 2_1_33B]
gi|298375297|ref|ZP_06985254.1| peptide deformylase [Bacteroides sp. 3_1_19]
gi|301310689|ref|ZP_07216628.1| peptide deformylase [Bacteroides sp. 20_3]
gi|410101704|ref|ZP_11296632.1| peptide deformylase [Parabacteroides sp. D25]
gi|423332158|ref|ZP_17309942.1| peptide deformylase [Parabacteroides distasonis CL03T12C09]
gi|423336940|ref|ZP_17314687.1| peptide deformylase [Parabacteroides distasonis CL09T03C24]
gi|158513748|sp|A6L9R8.1|DEF_PARD8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|149935735|gb|ABR42432.1| polypeptide deformylase [Parabacteroides distasonis ATCC 8503]
gi|256738530|gb|EEU51855.1| polypeptide deformylase [Parabacteroides sp. D13]
gi|262297293|gb|EEY85223.1| polypeptide deformylase [Bacteroides sp. 2_1_33B]
gi|298267797|gb|EFI09453.1| peptide deformylase [Bacteroides sp. 3_1_19]
gi|300832263|gb|EFK62894.1| peptide deformylase [Bacteroides sp. 20_3]
gi|409229999|gb|EKN22871.1| peptide deformylase [Parabacteroides distasonis CL03T12C09]
gi|409239502|gb|EKN32286.1| peptide deformylase [Parabacteroides sp. D25]
gi|409239959|gb|EKN32742.1| peptide deformylase [Parabacteroides distasonis CL09T03C24]
Length = 185
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 77/133 (57%), Gaps = 10/133 (7%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNP--VGE---RGEGEEIVLVNPRVNKYSNKMIP 55
MF+ MY DG+GL+APQVG++++L+V + +G+ +G + L+NP + S + I
Sbjct: 34 MFETMYNADGVGLAAPQVGLSIRLVVIDGDVMGDDFPECKGFKRALINPEFLERSEEEIA 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
EEGCLS PGIH V R ++V++ D N + AR+ QHE +HL G +F
Sbjct: 94 MEEGCLSLPGIHEKVSRSKTVRVRYWDENWEEHEEVVEGFAARIVQHECEHLTGHVFI-- 151
Query: 116 MTDDVLDSIREQL 128
D + +IR QL
Sbjct: 152 ---DNVSAIRRQL 161
>gi|374313843|ref|YP_005060272.1| polypeptide deformylase [Serratia symbiotica str. 'Cinara cedri']
gi|363988069|gb|AEW44260.1| polypeptide deformylase [Serratia symbiotica str. 'Cinara cedri']
Length = 170
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY +GIGL+A Q+ I+ +++V + R +G+ VL+NP + + S + EEGC
Sbjct: 35 MFDTMYSKEGIGLAATQIDIHQRIIVMDISKNRDQGQ--VLINPEILETSG-VTSIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + A V R VK+ A +NG F + DL A QHE DHL G LF + ++
Sbjct: 92 LSIPNLRALVPRAAYVKVCALSVNGKYFELEAYDLLAICIQHEMDHLIGKLFIDYLSPLK 151
Query: 121 LDSIREQLE 129
IR++++
Sbjct: 152 RQRIRQKIK 160
>gi|187736350|ref|YP_001878462.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835]
gi|187426402|gb|ACD05681.1| peptide deformylase [Akkermansia muciniphila ATCC BAA-835]
Length = 182
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 77/144 (53%), Gaps = 16/144 (11%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGER---------GEGEEI------VLVNPR 45
M + MY +GIGL+APQV I +QL+V + E GE +E+ + NP
Sbjct: 34 MLETMYAAEGIGLAAPQVSIPIQLVVIDIPKEEESVTWLKVNGEDKELSDIMPLMFANPV 93
Query: 46 VNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFD 105
+ Y M P+ EGCLS I A V RP+ VK I+G ++ + L AR QHE D
Sbjct: 94 LEPYG-PMHPFHEGCLSVMKIRASVVRPDFVKATVLLIDGREITIDCNGLLARCLQHECD 152
Query: 106 HLQGILFFERMTDDVLDSIREQLE 129
HL GILF ER++ ++R +L+
Sbjct: 153 HLNGILFVERVSSAQKITLRNKLK 176
>gi|400406431|ref|YP_006589179.1| peptide deformylase [secondary endosymbiont of Heteropsylla cubana]
gi|400364684|gb|AFP85751.1| peptide deformylase [secondary endosymbiont of Heteropsylla cubana]
Length = 175
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 73/117 (62%), Gaps = 3/117 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +GIGL+A QV I+ QL++ + ++ + + +VL+NP + +YS K I +EGC
Sbjct: 35 MFETMYSKNGIGLAATQVDIH-QLIIVIDISKK-QDQRLVLINPTILEYSGK-ISTKEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P ++ V R E VK+ A D G F + +DL A QHE DHL G LF + ++
Sbjct: 92 LSIPYQYSSVSRSEKVKVKALDYYGNNFYLEANDLLAICIQHEMDHLIGKLFIDYIS 148
>gi|392310462|ref|ZP_10272996.1| peptide deformylase [Pseudoalteromonas citrea NCIMB 1889]
Length = 169
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 74/129 (57%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+A QV I+ +++V + ER E +VL+NP + + + EEGC
Sbjct: 35 MKETMYDENGIGLAATQVNIHQRIVVIDVSEERNEA--MVLINPEIIEKEGSTVS-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P +A V+R ESVK+ A D NG F L A QHE DHL G LF + ++
Sbjct: 92 LSVPYSYAKVDRAESVKVKALDENGKEFQYEADGLLAICTQHELDHLLGKLFIDYLSPLK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RQRIRKKLE 160
>gi|241760428|ref|ZP_04758522.1| peptide deformylase [Neisseria flavescens SK114]
gi|241319097|gb|EER55590.1| peptide deformylase [Neisseria flavescens SK114]
Length = 167
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 71/117 (60%), Gaps = 3/117 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 35 MFETMYEARGIGLAATQVDVHERIVVMDLTEDRSEPR--VFINPVIVEKDGET-TYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ V R E VK++A + G +F++ L A QHE DHL GI+F E ++
Sbjct: 92 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVEHLS 148
>gi|404406072|ref|ZP_10997656.1| peptide deformylase [Alistipes sp. JC136]
Length = 181
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 71/122 (58%), Gaps = 5/122 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGEG---EEIVLVNPRVNKYSNKMIP 55
MF + + +G+GL+APQ+G N++L + + P GE + +NP + YS +
Sbjct: 34 MFLTLEEAEGVGLAAPQIGKNIRLFIIDCTPWGEEDPSCADYKRAFINPEIYAYSEEKKT 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
Y EGCLSFPGI ADV R ++++ D + + L A V QHE+DH++G++F +R
Sbjct: 94 YNEGCLSFPGIRADVSRSLAIRMRYLDTDFVEHDEEFTGLKAWVIQHEYDHIEGVVFTDR 153
Query: 116 MT 117
+
Sbjct: 154 IA 155
>gi|399048083|ref|ZP_10739813.1| peptide deformylase [Brevibacillus sp. CF112]
gi|433544432|ref|ZP_20500816.1| peptide deformylase [Brevibacillus agri BAB-2500]
gi|398053997|gb|EJL46143.1| peptide deformylase [Brevibacillus sp. CF112]
gi|432184287|gb|ELK41804.1| peptide deformylase [Brevibacillus agri BAB-2500]
Length = 158
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 68/114 (59%), Gaps = 5/114 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY +G+GL+APQVGI+ +++V + G+G I +VNP + + + Y EGC
Sbjct: 35 MADTMYDAEGVGLAAPQVGISKRVIVMDC----GDGL-IEIVNPEIVDHKGEQFDYPEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
LS PG+ DV R + +K+ +D G + DL +R QHE DHL G+LF +
Sbjct: 90 LSIPGLRGDVRRHQWIKLRGQDRFGNEIELEAEDLLSRCAQHEIDHLNGVLFID 143
>gi|225075032|ref|ZP_03718231.1| hypothetical protein NEIFLAOT_00031 [Neisseria flavescens
NRL30031/H210]
gi|261380545|ref|ZP_05985118.1| peptide deformylase [Neisseria subflava NJ9703]
gi|319639522|ref|ZP_07994269.1| peptide deformylase [Neisseria mucosa C102]
gi|224953637|gb|EEG34846.1| hypothetical protein NEIFLAOT_00031 [Neisseria flavescens
NRL30031/H210]
gi|284796513|gb|EFC51860.1| peptide deformylase [Neisseria subflava NJ9703]
gi|317399093|gb|EFV79767.1| peptide deformylase [Neisseria mucosa C102]
Length = 167
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 71/117 (60%), Gaps = 3/117 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + +R E V +NP + + + YEEGC
Sbjct: 35 MFETMYEARGIGLAATQVDVHERIVVMDLTEDRSEPR--VFINPVIVEKDGET-TYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ V R E VK++A + G +F++ L A QHE DHL GI+F E ++
Sbjct: 92 LSVPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVEHLS 148
>gi|89070116|ref|ZP_01157446.1| peptide deformylase [Oceanicola granulosus HTCC2516]
gi|89044337|gb|EAR50480.1| peptide deformylase [Oceanicola granulosus HTCC2516]
Length = 176
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 70/129 (54%), Gaps = 6/129 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQVG+ +++V + V + GE +VL +P + S+ YEEG
Sbjct: 38 MLETMYDAPGIGLAAPQVGVLKRVLVMDCVKDEGEAPRPLVLCDPEIVWTSDARNVYEEG 97
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +A+VERP V++ D+ G L A QHE DHL G LF D
Sbjct: 98 CLSIPDQYAEVERPAEVEVRWTDLEGGARRERFDGLWATCVQHEIDHLDGKLFI-----D 152
Query: 120 VLDSIREQL 128
L ++ Q+
Sbjct: 153 YLKPLKRQM 161
>gi|332666752|ref|YP_004449540.1| peptide deformylase [Haliscomenobacter hydrossis DSM 1100]
gi|332335566|gb|AEE52667.1| Peptide deformylase [Haliscomenobacter hydrossis DSM 1100]
Length = 183
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 77/134 (57%), Gaps = 5/134 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVG--ERGE---GEEIVLVNPRVNKYSNKMIP 55
M++ MY +G+GL+APQ+G ++L + + + E+G+ G + V +N + K+
Sbjct: 34 MWETMYHAEGVGLAAPQIGRPIRLFIIDSIQLEEKGKDVIGLKTVFINAEKVEEKGKIWA 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
YEEGCLS P I DV+R +++ + D N + + ARV QHE+DH++GILF E
Sbjct: 94 YEEGCLSIPDIRGDVDRLDTLTLRYLDENFVEHITTFDGINARVIQHEYDHIEGILFLEY 153
Query: 116 MTDDVLDSIREQLE 129
+ IR +LE
Sbjct: 154 LKPVKKAMIRGRLE 167
>gi|154247233|ref|YP_001418191.1| peptide deformylase [Xanthobacter autotrophicus Py2]
gi|154161318|gb|ABS68534.1| peptide deformylase [Xanthobacter autotrophicus Py2]
Length = 172
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 68/118 (57%), Gaps = 2/118 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
MFD MY GIGL+A QVG+ +++ + V GE ++ I L+NP + S + Y EG
Sbjct: 35 MFDTMYDAPGIGLAAIQVGVQRRVVTID-VAREGEAKKPIALINPEIIAASEETSVYAEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLS P + +VERP V + +DI G V+ L A QHE DHL G+LF + ++
Sbjct: 94 CLSIPEYYEEVERPARVTVRFQDIEGQVREVAADGLFATCVQHEIDHLNGVLFIDHIS 151
>gi|406983338|gb|EKE04552.1| hypothetical protein ACD_20C00051G0018 [uncultured bacterium]
Length = 194
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
+ D MY +G+GL+APQ+G + ++ V + IV VNP++ K S +I YE GC
Sbjct: 35 LMDTMYSQNGVGLAAPQLGESYRVFVIDTSTGDEPLNPIVFVNPKIIKKSGAIISYE-GC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSD--LPARVFQHEFDHLQGILFFERMTD 118
LSFP + +V R V I A+D G F++ D L AR QHE DHL GILF + T+
Sbjct: 94 LSFPEAYTNVRRYTDVVIRAKDDKGRPFTIEAKDGSLLARAIQHEMDHLDGILFIDHSTN 153
>gi|260574964|ref|ZP_05842966.1| peptide deformylase [Rhodobacter sp. SW2]
gi|259022969|gb|EEW26263.1| peptide deformylase [Rhodobacter sp. SW2]
Length = 181
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 68/129 (52%), Gaps = 6/129 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-EGEEIVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+G+ QL+V + V + + + NP V S + YEEG
Sbjct: 34 MLETMYDAPGIGLAAPQLGVTKQLIVMDCVKDPALTARPMAMFNPVVTWASEDLSTYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +A++ERP V++ ++G + L A QHE DHL G LF D
Sbjct: 94 CLSLPNQYAEIERPSEVRVRWTGLDGVEQEEHFTGLWATCVQHEIDHLSGKLFI-----D 148
Query: 120 VLDSIREQL 128
L +R Q+
Sbjct: 149 YLRPLRRQM 157
>gi|429748597|ref|ZP_19281779.1| peptide deformylase [Capnocytophaga sp. oral taxon 332 str. F0381]
gi|429170484|gb|EKY12156.1| peptide deformylase [Capnocytophaga sp. oral taxon 332 str. F0381]
Length = 202
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 82/140 (58%), Gaps = 17/140 (12%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGE----------GEEIVLVNPRVNK 48
M+D M +G+GL+APQVG+ ++L V + P + + G + V +N ++ +
Sbjct: 40 MYDTMNNANGVGLAAPQVGLAIRLFVVDTAPFADDEDLTAEEQKFLLGFKKVFINAKITE 99
Query: 49 YSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
+ K + EGCLS PG+ DV R E + I+ D N ++L+ L ARV QHE+DH++
Sbjct: 100 ETGKKWLFNEGCLSIPGVREDVSRNEQITIEFLDENFNPQKLTLNGLAARVVQHEYDHIE 159
Query: 109 GILFFERMTDDVLDSIREQL 128
GILF ++++ S+++QL
Sbjct: 160 GILFTDKIS-----SLKKQL 174
>gi|419802860|ref|ZP_14328040.1| peptide deformylase [Haemophilus parainfluenzae HK262]
gi|419845517|ref|ZP_14368784.1| peptide deformylase [Haemophilus parainfluenzae HK2019]
gi|385189100|gb|EIF36569.1| peptide deformylase [Haemophilus parainfluenzae HK262]
gi|386415385|gb|EIJ29917.1| peptide deformylase [Haemophilus parainfluenzae HK2019]
Length = 169
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+APQV I +++ + G++ ++VL+NP + S EEGC
Sbjct: 35 MFDTMYQEEGIGLAAPQVDILQRIITIDIEGDKQN--QLVLINPEI-LASEGETGIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG A V R E V + A D +G F++ L A QHE DHL GILF + ++
Sbjct: 92 LSIPGFRALVPRKEKVTVKALDRHGKEFTLDADGLLAICIQHEIDHLNGILFVDYLSPLK 151
Query: 121 LDSIREQL 128
I+E+L
Sbjct: 152 RQRIKEKL 159
>gi|379729207|ref|YP_005321403.1| peptide deformylase [Saprospira grandis str. Lewin]
gi|424842875|ref|ZP_18267500.1| peptide deformylase [Saprospira grandis DSM 2844]
gi|378574818|gb|AFC23819.1| peptide deformylase [Saprospira grandis str. Lewin]
gi|395321073|gb|EJF53994.1| peptide deformylase [Saprospira grandis DSM 2844]
Length = 185
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 77/139 (55%), Gaps = 16/139 (11%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-------GERGEGEEIVLVNPRVNKYSNKM 53
M++ MY G+G++APQVG +++L + + + GE+G E V +NP + + + K
Sbjct: 34 MWETMYHAGGMGIAAPQVGQSLRLFLVDTLQLDEEKNGEKGLKE--VFINPIIIEEAGKP 91
Query: 54 IPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFF 113
YEEGCLS P IH V+R V+I+ D N L ARV QHE+DH++G+LF
Sbjct: 92 WTYEEGCLSIPNIHGKVKRKAQVRIEYYDQNFELKEKVFDGLNARVIQHEYDHIEGVLFT 151
Query: 114 -------ERMTDDVLDSIR 125
+RM LD I+
Sbjct: 152 DYLSPMKKRMLKKRLDKIQ 170
>gi|335040153|ref|ZP_08533289.1| Peptide deformylase [Caldalkalibacillus thermarum TA2.A1]
gi|334179978|gb|EGL82607.1| Peptide deformylase [Caldalkalibacillus thermarum TA2.A1]
Length = 159
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 75/128 (58%), Gaps = 7/128 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + MY +G+GL+APQVGI+ ++ V + E G E +NP + K ++ P EG
Sbjct: 35 MAETMYAAEGVGLAAPQVGISKRVFVVDVGDENGLLE---FINPEIIVKEGEQIGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS PG++ +V R + +K+ A D NG F + DL AR QHE DHL G+LF + + +
Sbjct: 90 CLSIPGVNGEVRRAQKIKVRAIDRNGETFELEAEDLLARAIQHELDHLNGVLFID-IAER 148
Query: 120 VLDSIREQ 127
+ D EQ
Sbjct: 149 IYDKENEQ 156
>gi|308047745|ref|YP_003911311.1| peptide deformylase [Ferrimonas balearica DSM 9799]
gi|307629935|gb|ADN74237.1| peptide deformylase [Ferrimonas balearica DSM 9799]
Length = 171
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ GIGL+A Q+ +VQ++V + +R E + V +NP++ + EEGC
Sbjct: 35 MFDTMYEERGIGLAATQINEHVQVIVMDHSEDRSEPK--VFINPKIIEEKGHFT-NEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++A VER E V +A+D G F+V +L + QHE DHL G LF + ++
Sbjct: 92 LSVPGVYAKVERAEHVVFEAQDREGNPFTVEADELLSICIQHEMDHLLGKLFVDYLSPLK 151
Query: 121 LDSIREQLE 129
I+++LE
Sbjct: 152 RQRIKQKLE 160
>gi|258622314|ref|ZP_05717340.1| peptide deformylase [Vibrio mimicus VM573]
gi|258624834|ref|ZP_05719762.1| peptide deformylase [Vibrio mimicus VM603]
gi|262164774|ref|ZP_06032512.1| peptide deformylase [Vibrio mimicus VM223]
gi|262173015|ref|ZP_06040692.1| peptide deformylase [Vibrio mimicus MB-451]
gi|258582832|gb|EEW07653.1| peptide deformylase [Vibrio mimicus VM603]
gi|258585638|gb|EEW10361.1| peptide deformylase [Vibrio mimicus VM573]
gi|261890373|gb|EEY36360.1| peptide deformylase [Vibrio mimicus MB-451]
gi|262027154|gb|EEY45821.1| peptide deformylase [Vibrio mimicus VM223]
Length = 168
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 77/131 (58%), Gaps = 9/131 (6%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ D +Y TD GIGL+APQVG ++V + R E +VL+NP+V SNK + +EG
Sbjct: 34 LLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNRDE--PMVLINPKVVSGSNKEMG-QEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +ADVER SV ++A D +G + SD A V QHE DHL G LF D
Sbjct: 91 CLSVPDYYADVERYTSVVVEALDRDGKPLKIESSDFLAIVMQHEIDHLSGNLFI-----D 145
Query: 120 VLDSIREQLEI 130
L +++Q+ +
Sbjct: 146 YLSPLKQQMAM 156
>gi|156743414|ref|YP_001433543.1| peptide deformylase [Roseiflexus castenholzii DSM 13941]
gi|254767599|sp|A7NPM9.1|DEF_ROSCS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|156234742|gb|ABU59525.1| peptide deformylase [Roseiflexus castenholzii DSM 13941]
Length = 185
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 13/140 (9%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN---PVGERGEGEEI--------VLVNPRVNKY 49
MF+ M+ +G+GL+APQ+G+ +L V + ER +G ++ VL+NP + K
Sbjct: 39 MFETMHAANGVGLAAPQIGVTQRLAVIAIPPMMEERPDGTKVEVAPEQTFVLINPEIVKA 98
Query: 50 SNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSV-SLSDLPARVFQHEFDHLQ 108
S++ EGCLS PG + +V R V ++ D+NG R + + L AR QHE DHL
Sbjct: 99 SDQEDVGLEGCLSLPGWYGEVPRAAWVTVEYTDLNGRRQRIRRATGLLARALQHEIDHLD 158
Query: 109 GILFFERMTD-DVLDSIREQ 127
G+LF ER+ D L S E+
Sbjct: 159 GVLFTERIRDLSTLKSYSEE 178
>gi|345429246|ref|YP_004822364.1| peptide deformylase [Haemophilus parainfluenzae T3T1]
gi|301155307|emb|CBW14773.1| peptide deformylase [Haemophilus parainfluenzae T3T1]
Length = 169
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+APQV I +++ + G++ ++VL+NP + S EEGC
Sbjct: 35 MFDTMYQEEGIGLAAPQVDILQRIITIDIEGDKQN--QLVLINPEI-LASEGETGIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG A V R E V + A D +G F++ L A QHE DHL GILF + ++
Sbjct: 92 LSIPGFRALVPRKEKVTVKALDRHGKEFTLDADGLLAICIQHEIDHLNGILFVDYLSPLK 151
Query: 121 LDSIREQL 128
I+E+L
Sbjct: 152 RQRIKEKL 159
>gi|218510166|ref|ZP_03508044.1| peptide deformylase [Rhizobium etli Brasil 5]
Length = 133
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 66/113 (58%)
Query: 5 MYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFP 64
MY GIGL+A Q+G+ +++V + E E + V +NP + K S++ YEEGCLS P
Sbjct: 1 MYDAPGIGLAAIQIGVPRRMLVIDVSREGEEKQPQVFINPEIVKSSDERSVYEEGCLSIP 60
Query: 65 GIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
+A+VERP V + D NG +V L A QHE DHL G+LF + ++
Sbjct: 61 DYYAEVERPAVVSVKYLDRNGKEQTVEADGLLATCLQHEIDHLNGVLFIDHIS 113
>gi|426400845|ref|YP_007019817.1| peptide deformylase [Candidatus Endolissoclinum patella L2]
gi|425857513|gb|AFX98549.1| peptide deformylase [Candidatus Endolissoclinum patella L2]
Length = 184
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 65/117 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+APQVG+ +++V + + + + L NP + S I YEEGC
Sbjct: 39 MLETMYDAPGIGLAAPQVGVTKRVIVLDVSKKDSQQAPLCLANPEIIWRSYDNITYEEGC 98
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P + DV+R +VK+ D NG + + L A QHE DH+ GIL + ++
Sbjct: 99 LSLPDFYTDVKRSAAVKVRYVDRNGHKQEIHAKGLLAICLQHEIDHINGILLVDNIS 155
>gi|37676994|ref|NP_937390.1| peptide deformylase [Vibrio vulnificus YJ016]
gi|39930924|sp|Q7MCQ2.1|DEF1_VIBVY RecName: Full=Peptide deformylase 1; Short=PDF 1; AltName:
Full=Polypeptide deformylase 1
gi|37201538|dbj|BAC97360.1| N-formylmethionyl-tRNA deformylase [Vibrio vulnificus YJ016]
Length = 168
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 77/129 (59%), Gaps = 9/129 (6%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ + +Y+TD G+GL+APQVG ++V + R E +VLVNP+V SNK + +EG
Sbjct: 34 LLETLYETDNGVGLAAPQVGREEAIVVIDLSENRDEP--LVLVNPKVVSGSNKEMG-QEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +ADVER SV ++A D NG + S+ A V QHE DHL G LF D
Sbjct: 91 CLSVPDYYADVERYTSVVVEALDRNGKELRIETSEFLAIVMQHEIDHLSGNLFI-----D 145
Query: 120 VLDSIREQL 128
L +++Q+
Sbjct: 146 YLSPLKQQM 154
>gi|258545465|ref|ZP_05705699.1| peptide deformylase [Cardiobacterium hominis ATCC 15826]
gi|258519298|gb|EEV88157.1| peptide deformylase [Cardiobacterium hominis ATCC 15826]
Length = 184
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 71/129 (55%), Gaps = 13/129 (10%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE------------IVLVNPRVNK 48
MF MY+ GIGL+A QV I+ +++V + V ER E +E +VL+NP +
Sbjct: 35 MFATMYEAHGIGLAATQVNIHQRIVVMD-VPERREDDETETPDAPIPHTKLVLINPEIIA 93
Query: 49 YSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
S + ++EGCLS PG ADVERP ++ D+ G+R L QHE DHL
Sbjct: 94 TSEETASWQEGCLSLPGQFADVERPAKIRYAYYDLGGSRCEGEAEGLLGVCIQHEIDHLN 153
Query: 109 GILFFERMT 117
G+LF + ++
Sbjct: 154 GVLFIDHLS 162
>gi|329912478|ref|ZP_08275758.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
gi|327545607|gb|EGF30770.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
Length = 178
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 73/123 (59%), Gaps = 5/123 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNP-----VGERGEGEEIVLVNPRVNKYSNKMIP 55
MF+ M+ +G GL+APQ+G+N+QL+++ E E E +L+NP + S++++
Sbjct: 36 MFETMHAVNGAGLAAPQIGVNLQLVIYGSRNNVRYPEAPEVPETILINPVLTPLSDELVE 95
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
EGCLS PG+ V R +++ + D GA S + ARV QHE DHL G+L+ R
Sbjct: 96 NWEGCLSVPGLRGVVPRWQALHYEGVDQFGAVISRDVDGFHARVVQHECDHLIGVLYPMR 155
Query: 116 MTD 118
+TD
Sbjct: 156 VTD 158
>gi|434407994|ref|YP_007150879.1| peptide deformylase [Cylindrospermum stagnale PCC 7417]
gi|428262249|gb|AFZ28199.1| peptide deformylase [Cylindrospermum stagnale PCC 7417]
Length = 177
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 80/132 (60%), Gaps = 6/132 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVF--NPVGERGEG---EEIVLVNPRVNKYSNKMIP 55
+ + + +G+G++APQV + +L + +P E ++NP++ YS++++
Sbjct: 37 LIATVSQANGVGIAAPQVAESYRLFILASHPNARYPYAPLMEPTAIINPKIIAYSDEVVK 96
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
EGCLS PGI V R ++++++ D NG + +L+D AR+FQHEFDHL GI+F +R
Sbjct: 97 GWEGCLSVPGIRGLVPRYQTIEVEYTDRNGELKTQTLTDFVARIFQHEFDHLDGIVFVDR 156
Query: 116 MTDDVLDSIREQ 127
+ + LD + EQ
Sbjct: 157 L-ESTLDMLTEQ 167
>gi|339009260|ref|ZP_08641832.1| peptide deformylase [Brevibacillus laterosporus LMG 15441]
gi|338773738|gb|EGP33269.1| peptide deformylase [Brevibacillus laterosporus LMG 15441]
Length = 159
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 8/116 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIV-LVNPRVNKYSNKMIP-YEE 58
M D MY +G+G++APQVGI+ ++ V + G+ V +NP + ++S + Y E
Sbjct: 35 MKDTMYAANGVGIAAPQVGISKRVFVMDC------GDFYVEAINPEIIEFSGEQFDNYPE 88
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
GCLS PG+H DV R VK+ A+D +G + + + DL AR QHE DHL G+LF +
Sbjct: 89 GCLSIPGLHGDVRRHMVVKMRAQDRDGNLYELEVDDLEARCIQHELDHLNGVLFID 144
>gi|430804750|ref|ZP_19431865.1| peptide deformylase [Cupriavidus sp. HMR-1]
gi|429503070|gb|ELA01372.1| peptide deformylase [Cupriavidus sp. HMR-1]
Length = 168
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+A QV ++ +++V + R E +V +NP V S +EEGC
Sbjct: 35 MAETMYEAPGIGLAATQVDVHERVIVIDISESRDEL--MVFINPEVTWASENRKVWEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P ++ VERP+ VK+ A D G F + DL A QHE DHL G +F E ++
Sbjct: 93 LSVPEVYDRVERPDRVKVRALDEKGETFELDADDLLAVCIQHEIDHLDGKVFVEYLSPLK 152
Query: 121 LDSIREQLE 129
L I+ +L+
Sbjct: 153 LQRIKSKLQ 161
>gi|255282544|ref|ZP_05347099.1| peptide deformylase [Bryantella formatexigens DSM 14469]
gi|255266837|gb|EET60042.1| peptide deformylase [Marvinbryantia formatexigens DSM 14469]
Length = 162
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 73/123 (59%), Gaps = 5/123 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ G+GL+APQVGI +++V + GE E VL+NP + + S + YE GC
Sbjct: 35 MFDTMYEEGGVGLAAPQVGILKRIVVIDTTGE----EPHVLINPVIEETSGEQRGYE-GC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG V RP V++ A D N + + ++L AR HE DHL+GI++ ++ +
Sbjct: 90 LSLPGKSGIVTRPNYVRVRAFDENMQEYVLEGTELLARAICHECDHLEGIMYTSKVEGKL 149
Query: 121 LDS 123
D+
Sbjct: 150 YDN 152
>gi|261823200|ref|YP_003261306.1| peptide deformylase [Pectobacterium wasabiae WPP163]
gi|261607213|gb|ACX89699.1| peptide deformylase [Pectobacterium wasabiae WPP163]
Length = 170
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+A QV I+ +++V + ER + +VL+NP + + S + EEGC
Sbjct: 35 MFDTMYEEEGIGLAATQVDIHQRIIVIDVSEERDQ--RLVLINPELIEKSGET-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P A V R E VK+ A D G F + S+L A QHE DHL G LF + ++
Sbjct: 92 LSIPETRALVPRAEHVKVRALDREGKVFELEASELLAICIQHEMDHLVGKLFIDYLSPLK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RQRIRQKLE 160
>gi|451946455|ref|YP_007467050.1| peptide deformylase [Desulfocapsa sulfexigens DSM 10523]
gi|451905803|gb|AGF77397.1| peptide deformylase [Desulfocapsa sulfexigens DSM 10523]
Length = 198
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 71/117 (60%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+APQ+G +VQL+V N + E +V+VNP + + + I EEGC
Sbjct: 64 MIETMYDAPGVGLAAPQIGESVQLIVVNAARDPDVQESMVMVNPEITEREGEQID-EEGC 122
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS + + V+R + + + +DI G + +++ D A V QHE DHL GILF + ++
Sbjct: 123 LSVIDLTSSVKRSKKITVCYQDIRGGKQELTVEDRFAVVLQHEIDHLNGILFIDHLS 179
>gi|312134885|ref|YP_004002223.1| peptide deformylase [Caldicellulosiruptor owensensis OL]
gi|311774936|gb|ADQ04423.1| peptide deformylase [Caldicellulosiruptor owensensis OL]
Length = 166
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 72/116 (62%), Gaps = 6/116 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY+ +GIGL+APQVG+ + +V + GEG I LVNP++ +YS + EGC
Sbjct: 35 MKDTMYEANGIGLAAPQVGVLKRAVVIDI----GEGA-IELVNPQI-EYSEGSVVDVEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LS P + +VERP+ V ++A+D G F + L AR HE DHL GILF +++
Sbjct: 89 LSVPNMWGEVERPQKVVVNAQDRFGNEFRLEAEGLLARALCHEIDHLDGILFVDKV 144
>gi|169824358|ref|YP_001691969.1| polypeptide deformylase [Finegoldia magna ATCC 29328]
gi|238687734|sp|B0S139.1|DEF_FINM2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|167831163|dbj|BAG08079.1| polypeptide deformylase [Finegoldia magna ATCC 29328]
Length = 162
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 78/129 (60%), Gaps = 7/129 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+ QVG+ +++V + E G+ +VL+NP++ + S + EGC
Sbjct: 35 MFETMYENKGIGLACVQVGMLKRIVVIDMQDEDGK---MVLINPKIIEKSEEKQINIEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + VERP++V ++ D+NG V +D A F HE DHL G+L+ TD V
Sbjct: 92 LSVPGKNGYVERPKTVVVEYTDLNGNTQRVMGTDYKAHCFCHELDHLDGVLY----TDKV 147
Query: 121 LDSIREQLE 129
L+ E++E
Sbjct: 148 LNLSEEEVE 156
>gi|15644409|ref|NP_229461.1| peptide deformylase [Thermotoga maritima MSB8]
gi|418045721|ref|ZP_12683816.1| peptide deformylase [Thermotoga maritima MSB8]
gi|3023626|sp|P96113.1|DEF_THEMA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|4982236|gb|AAD36728.1|AE001808_3 polypeptide deformylase [Thermotoga maritima MSB8]
gi|1772608|emb|CAA71356.1| polypeptide deformylase [Thermotoga maritima]
gi|351676606|gb|EHA59759.1| peptide deformylase [Thermotoga maritima MSB8]
Length = 164
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 5/128 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY DG+GL+APQVGI+ + V + G G + ++NP + + + EEGC
Sbjct: 33 MIETMYHYDGVGLAAPQVGISQRFFVMDV----GNGP-VAVINPEILEIDPETEVAEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFP I ++ER + +K+ ++ G L ARVFQHEFDHL G+L +R++
Sbjct: 88 LSFPEIFVEIERSKRIKVKYQNTRGEYVEEELEGYAARVFQHEFDHLNGVLIIDRISPAK 147
Query: 121 LDSIREQL 128
+R++L
Sbjct: 148 RLLLRKKL 155
>gi|260574965|ref|ZP_05842967.1| peptide deformylase [Rhodobacter sp. SW2]
gi|259022970|gb|EEW26264.1| peptide deformylase [Rhodobacter sp. SW2]
Length = 163
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 60/116 (51%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY G GL+APQ+GI ++ V + + G VLVNP + S EGC
Sbjct: 34 MLATMYAATGRGLAAPQIGILQRVFVMDTGWKEGRPAPQVLVNPEILWRSEACKTVAEGC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LS PGI D+ RP +++ RD++G L+ A QHE DHL GIL + +
Sbjct: 94 LSLPGISPDISRPAEIRLRWRDLDGTPHEAHLTGFAATCAQHEIDHLDGILTLDHL 149
>gi|226942060|ref|YP_002797134.1| Def [Laribacter hongkongensis HLHK9]
gi|226716987|gb|ACO76125.1| Def [Laribacter hongkongensis HLHK9]
Length = 167
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 78/129 (60%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+ + +L+V + + E +G +VL+NP + + + + + YEEGC
Sbjct: 35 MAETMYAAHGIGLAATQIDYHRRLVVID-LSEEHDGL-LVLINPVITRKAGETV-YEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+ V R E+V ++A D NG FS+ L A QHE DHL G +F E ++
Sbjct: 92 LSVPGIYDKVTRAETVTVEALDRNGQPFSLDAEGLLAICIQHEIDHLDGKVFVEHLSQMK 151
Query: 121 LDSIREQLE 129
I+++L+
Sbjct: 152 QSRIKQKLK 160
>gi|302872125|ref|YP_003840761.1| peptide deformylase [Caldicellulosiruptor obsidiansis OB47]
gi|302574984|gb|ADL42775.1| peptide deformylase [Caldicellulosiruptor obsidiansis OB47]
Length = 166
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 72/116 (62%), Gaps = 6/116 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY+ +GIGL+APQVG+ + +V + GEG I LVNP++ +YS + EGC
Sbjct: 35 MKDTMYEANGIGLAAPQVGVLKRAVVIDI----GEGA-IELVNPQI-EYSEGSVVDVEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LS P + +VERP+ V ++A+D G F + L AR HE DHL GILF +++
Sbjct: 89 LSVPNVWGEVERPQKVVVNAQDRFGNEFRLEAEGLLARAVCHEIDHLDGILFVDKV 144
>gi|374594361|ref|ZP_09667366.1| peptide deformylase [Gillisia limnaea DSM 15749]
gi|373872436|gb|EHQ04433.1| peptide deformylase [Gillisia limnaea DSM 15749]
Length = 196
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 74/130 (56%), Gaps = 14/130 (10%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI-------------VLVNPRVN 47
M+D MY+ G+GL+A Q+G+ ++L + +P GE EE+ V +NP++
Sbjct: 34 MWDTMYEAYGVGLAAQQIGLPIRLFIIDPSA-FGEDEELEIAEQEQLKNLRKVFINPKIV 92
Query: 48 KYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
+ + EGCLS P + DV R + + I+ +D N FS L ARV QHE+DH+
Sbjct: 93 AEEGEEWAFNEGCLSIPEVREDVFRKQQITIEYQDENFNSFSEVYEGLAARVIQHEYDHI 152
Query: 108 QGILFFERMT 117
+GILF ++++
Sbjct: 153 EGILFTDKLS 162
>gi|338972103|ref|ZP_08627481.1| peptide deformylase [Bradyrhizobiaceae bacterium SG-6C]
gi|338234714|gb|EGP09826.1| peptide deformylase [Bradyrhizobiaceae bacterium SG-6C]
Length = 200
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 66/117 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY GIGL+A QV + ++L+ + + GE E V +NP + S+++ YEEGC
Sbjct: 64 MFQTMYDAPGIGLAAIQVAVPLRLITMDLSKKEGEKEPRVFINPEILASSDELSVYEEGC 123
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P + +VERP V++ D+ G L A QHE DHL G+LF + ++
Sbjct: 124 LSIPEYYEEVERPARVRVRFMDLEGVMREEDAEGLYATCIQHEIDHLNGVLFVDYLS 180
>gi|239818071|ref|YP_002946981.1| peptide deformylase [Variovorax paradoxus S110]
gi|239804648|gb|ACS21715.1| peptide deformylase [Variovorax paradoxus S110]
Length = 173
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++ +L+V + ER E +VL+NP + S++ + EEGC
Sbjct: 35 MLETMYDASGIGLAATQVDVHERLVVIDVSEERNE--PLVLINPEIIWASDEKVLNEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+ V R SVK+ A D NG ++ L A QHE DHL G +F E ++
Sbjct: 93 LSVPGIYDGVMRSTSVKVQALDENGELRTIEAEGLLAVCIQHELDHLLGKVFVEYLSPLK 152
Query: 121 LDSIREQL 128
+ I+ +L
Sbjct: 153 RNRIKSKL 160
>gi|406706815|ref|YP_006757168.1| peptide deformylase [alpha proteobacterium HIMB5]
gi|406652591|gb|AFS47991.1| peptide deformylase [alpha proteobacterium HIMB5]
Length = 172
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 68/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+A QVGI +++V + + + E + VNP + + YEEGC
Sbjct: 35 MLETMYSANGIGLAAIQVGIPKRIIVMDLSKDENKKEPMYFVNPVIKNKNPVKSTYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P A+++RP I+ + NG + ++S L A QHE DHL+GILF + ++
Sbjct: 95 LSVPNQFAEIDRPSKCDIEFLNYNGNKQTISAEGLFATCIQHEMDHLEGILFIDHLS 151
>gi|333368768|ref|ZP_08460931.1| peptide deformylase [Psychrobacter sp. 1501(2011)]
gi|332976314|gb|EGK13171.1| peptide deformylase [Psychrobacter sp. 1501(2011)]
Length = 176
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 67/117 (57%), Gaps = 2/117 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++QL+V + + E + V +NP++ PYEEGC
Sbjct: 35 MIETMYDAKGIGLAATQVDRHIQLIVMD-LSENNDSPR-VFINPKITPLVEDKKPYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P ++ VERP VKI+A D +G F L A QHE DHL G+LF + ++
Sbjct: 93 LSVPDVYDSVERPVKVKIEALDGDGKPFEEIAEGLLAVCIQHEMDHLNGVLFVDYLS 149
>gi|399543081|ref|YP_006556389.1| peptide deformylase [Marinobacter sp. BSs20148]
gi|399158413|gb|AFP28976.1| Peptide deformylase [Marinobacter sp. BSs20148]
Length = 167
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ Q++V + + E V +NP++ + +EGC
Sbjct: 34 MFETMYDAVGIGLAASQVNVHQQIVVMDLSDDNSEPR--VFINPKIEVLDGDLEAMQEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + DVER E I A D NG F + L A QHE DHL G LF + ++
Sbjct: 92 LSVPGFYEDVERIEHCLIKALDRNGEAFEIEARGLLAVCIQHEMDHLNGKLFVDYLSSLK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RTRIRKKLE 160
>gi|194334376|ref|YP_002016236.1| peptide deformylase [Prosthecochloris aestuarii DSM 271]
gi|238693348|sp|B4S9B9.1|DEF_PROA2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|194312194|gb|ACF46589.1| peptide deformylase [Prosthecochloris aestuarii DSM 271]
Length = 186
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 77/133 (57%), Gaps = 7/133 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV--FNPVGERGEGEEIVLVNPRV--NKYSNKMIPY 56
M + M GIGL+APQ+G++++L++ +PV E +V++NP + K N M
Sbjct: 34 MIESMRNASGIGLAAPQIGLSMRLLIVDLSPVQGYENAEPMVVINPHILAVKGYNAM--- 90
Query: 57 EEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
EEGCLS P IHADV RP S+++ R+ + S L ARV QHE DHL G LF +++
Sbjct: 91 EEGCLSIPDIHADVVRPSSIQLKYRNEHFEERVDEFSALMARVLQHEIDHLDGTLFVDKL 150
Query: 117 TDDVLDSIREQLE 129
+++ LE
Sbjct: 151 QRRDRRKVQKSLE 163
>gi|430375895|ref|ZP_19430298.1| peptide deformylase [Moraxella macacae 0408225]
gi|429541126|gb|ELA09154.1| peptide deformylase [Moraxella macacae 0408225]
Length = 176
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 72/128 (56%), Gaps = 2/128 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF MY G+GL+A Q+ ++QL+V + + E G + V +NP V + YEEGC
Sbjct: 35 MFQTMYAAKGVGLAATQIDEHIQLIVMD-LSEEGNQPQ-VFINPVVTPLVEEQFTYEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P + V+RP+ VKI+A+D G F + L A QHE DHL G LF + ++
Sbjct: 93 LSVPDYYDKVDRPKKVKINAKDREGNDFELEAEGLLAVCIQHEIDHLNGKLFVDYLSKLK 152
Query: 121 LDSIREQL 128
D R+++
Sbjct: 153 QDRARDRV 160
>gi|319407942|emb|CBI81596.1| polypeptide deformylase [Bartonella schoenbuchensis R1]
Length = 174
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 67/117 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QVG+ ++++V + +V++NP + S++ Y+EGC
Sbjct: 33 MLETMYHAQGIGLAAIQVGVPLRMLVIDIAENNTPKNPLVVINPEILWLSDERNIYKEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A VERP+ +++ D G + + DL A QHE DHL G LF + ++
Sbjct: 93 LSIPEYYAQVERPKRLRVRYSDREGKQTEIEADDLLATCLQHEIDHLNGCLFIDHIS 149
>gi|94312496|ref|YP_585706.1| peptide deformylase [Cupriavidus metallidurans CH34]
gi|93356348|gb|ABF10437.1| formylmethionine deformylase [Cupriavidus metallidurans CH34]
Length = 168
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ GIGL+A QV ++ +++V + R E +V +NP V S +EEGC
Sbjct: 35 MAETMYEAPGIGLAATQVDVHERVIVIDISESRDEL--MVFINPEVTWASENRKVWEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P ++ VERP+ VK+ A D G F + DL A QHE DHL G +F E ++
Sbjct: 93 LSVPEVYDRVERPDRVKVRALDEKGEAFELDADDLLAVCIQHEIDHLDGKVFVEYLSPLK 152
Query: 121 LDSIREQLE 129
L I+ +L+
Sbjct: 153 LQRIKSKLQ 161
>gi|395788204|ref|ZP_10467779.1| peptide deformylase [Bartonella birtlesii LL-WM9]
gi|395409537|gb|EJF76125.1| peptide deformylase [Bartonella birtlesii LL-WM9]
Length = 176
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 69/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY G+GL+A Q+GI ++++V + + +V++NP + S++ Y+EGC
Sbjct: 35 MLDTMYNAQGVGLAAIQIGIPLRMLVIDVSRDDIPKNPLVVINPEILWLSDERNIYKEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP+ + + +D G + + DL A QHE DHL G LF + ++
Sbjct: 95 LSIPEYYAEVERPKRLYVRYQDRQGKQTEIETDDLLATCLQHEIDHLNGCLFIDHIS 151
>gi|170288957|ref|YP_001739195.1| peptide deformylase [Thermotoga sp. RQ2]
gi|281412566|ref|YP_003346645.1| peptide deformylase [Thermotoga naphthophila RKU-10]
gi|238688844|sp|B1LB14.1|DEF_THESQ RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|170176460|gb|ACB09512.1| peptide deformylase [Thermotoga sp. RQ2]
gi|281373669|gb|ADA67231.1| peptide deformylase [Thermotoga naphthophila RKU-10]
Length = 164
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 5/128 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY DG+GL+APQVGI+ + V + G G + ++NP + + + EEGC
Sbjct: 33 MIETMYHYDGVGLAAPQVGISQRFFVMDV----GNGP-VAVINPEILEIDPETEVAEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFP I ++ER + +K+ ++ G L ARVFQHEFDHL G+L +R++
Sbjct: 88 LSFPEIFVEIERSKRIKVKYQNTRGEYVEEELEGYAARVFQHEFDHLNGVLIIDRISPAK 147
Query: 121 LDSIREQL 128
+R++L
Sbjct: 148 RLLLRKKL 155
>gi|422349844|ref|ZP_16430733.1| peptide deformylase [Sutterella wadsworthensis 2_1_59BFAA]
gi|404658053|gb|EKB30933.1| peptide deformylase [Sutterella wadsworthensis 2_1_59BFAA]
Length = 174
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGEE----IVLVNPRVNKYSNKMIP 55
M+D M GIG++APQVG+++Q++ F E G VL+NP V + +
Sbjct: 35 MWDTMDVEGGIGIAAPQVGVSLQVICFGTKESEEASGARRVPRTVLINPVVEPVGEETMS 94
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
EGCLS PG+ V RP +V+ D+ G R ++ L ARV QHE DHL GIL+ R
Sbjct: 95 AWEGCLSVPGLRGRVVRPVAVRYKGVDLEGNRIERTVDGLHARVVQHEADHLVGILYPMR 154
Query: 116 MTD 118
+TD
Sbjct: 155 VTD 157
>gi|395783639|ref|ZP_10463488.1| peptide deformylase [Bartonella melophagi K-2C]
gi|395425761|gb|EJF91921.1| peptide deformylase [Bartonella melophagi K-2C]
Length = 174
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 67/117 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QVG+ ++++V + +V++NP + S++ Y+EGC
Sbjct: 33 MLETMYHAQGIGLAAIQVGVPLRMLVIDIAENNTPKNPLVVINPEILWLSDERNIYKEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A VERP+ +++ D G + + DL A QHE DHL G LF + ++
Sbjct: 93 LSIPEYYAQVERPKRLRVRYSDREGKQTEIEADDLLATCLQHEIDHLNGCLFIDHIS 149
>gi|304320578|ref|YP_003854221.1| peptide deformylase [Parvularcula bermudensis HTCC2503]
gi|303299480|gb|ADM09079.1| peptide deformylase [Parvularcula bermudensis HTCC2503]
Length = 170
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 66/117 (56%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + GE VNP + + + PY+EGC
Sbjct: 35 MLETMYAAPGIGLAAIQIGVPKRVIVMDLAGEGEPPAPRYFVNPVIRNPATDLAPYQEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P + ++ERP + +D D +G ++ L A QHE DHL+G+LF + ++
Sbjct: 95 LSVPDYYEEIERPATCTVDYLDYDGTPRTLEAEGLLATCIQHEMDHLEGVLFIDHLS 151
>gi|421526471|ref|ZP_15973079.1| polypeptide deformylase [Fusobacterium nucleatum ChDC F128]
gi|402257549|gb|EJU08023.1| polypeptide deformylase [Fusobacterium nucleatum ChDC F128]
Length = 174
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+TDG+GL+APQ+G++ ++ V + GEG ++NP + + + +EEGC
Sbjct: 36 MVETMYETDGVGLAAPQIGVSKRIFVCD----NGEGVIRKVINPVIVPLTEETQEFEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ VERP+ V + + G D A V QHE DHL GILF E+++
Sbjct: 92 LSVPGIYKKVERPKRVLLKYLNEYGKEIEEIAEDFLAVVVQHENDHLDGILFVEKIS 148
>gi|253690150|ref|YP_003019340.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
PC1]
gi|259645184|sp|C6DFR5.1|DEF_PECCP RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|251756728|gb|ACT14804.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
PC1]
Length = 170
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+A QV I+ +++V + ER + +VL+NP + + S EEGC
Sbjct: 35 MFDTMYEEEGIGLAATQVDIHQRIIVIDVSEERDQ--RLVLINPELIEKSGDT-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P A V R E VK+ A D G F + S+L A QHE DHL G LF + ++
Sbjct: 92 LSIPETRALVPRAEHVKVRALDREGKTFELEASELLAICIQHEMDHLVGKLFIDYLSPLK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RQRIRQKLE 160
>gi|171057041|ref|YP_001789390.1| peptide deformylase [Leptothrix cholodnii SP-6]
gi|170774486|gb|ACB32625.1| peptide deformylase [Leptothrix cholodnii SP-6]
Length = 171
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 77/128 (60%), Gaps = 2/128 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ +++V + ER + +VL+NPR+ S +M+ +EGC
Sbjct: 35 MFETMYEARGIGLAATQVDVHERVIVIDVSEERND--PLVLINPRIVAASEEMMVGDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ VER V+++A D NG R+ L + QHE DHL G +F E ++
Sbjct: 93 LSVPTIYDRVERHAQVQVEALDRNGQRYEFEADGLLSVCVQHEMDHLLGKVFVEYLSPLK 152
Query: 121 LDSIREQL 128
+ IR ++
Sbjct: 153 RNRIRSKM 160
>gi|126728524|ref|ZP_01744340.1| peptide deformylase [Sagittula stellata E-37]
gi|126711489|gb|EBA10539.1| peptide deformylase [Sagittula stellata E-37]
Length = 175
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 74/131 (56%), Gaps = 9/131 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE---IVLVNPRVNKYSNKMIPYE 57
M + MY GIGL+APQ+G+ +L+V + + GE+ +V+ NPRV S++ YE
Sbjct: 34 MLETMYDAPGIGLAAPQIGVLSRLIVLD-CAKSDNGEDARPLVMFNPRVIASSDEQNVYE 92
Query: 58 EGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
EGCLS P +A+VERP V ++ D +G + + L A QHE DHL G LF
Sbjct: 93 EGCLSIPEQYAEVERPRVVDVEWLDRDGMLRTETFDGLWATCVQHEIDHLDGKLFI---- 148
Query: 118 DDVLDSIREQL 128
D L +R Q+
Sbjct: 149 -DYLKPLRRQM 158
>gi|427714359|ref|YP_007062983.1| peptide deformylase [Synechococcus sp. PCC 6312]
gi|427378488|gb|AFY62440.1| peptide deformylase [Synechococcus sp. PCC 6312]
Length = 192
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 73/120 (60%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY + GIGL+APQVGIN QL+V + + ++L+NP + S ++ EEGC
Sbjct: 52 MLQTMYSSSGIGLAAPQVGINKQLIVVDINPDEAANPPLILINPVIKGVSEEVEVAEEGC 111
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG++ DV+RP +++ +D G + ++L AR HE DHL G++F +R+ + +
Sbjct: 112 LSIPGVYLDVKRPVMIEVAYKDELGRPQVLYATELLARAILHEIDHLTGVMFVDRVENAI 171
>gi|182420425|ref|ZP_02951645.1| polypeptide deformylase [Clostridium butyricum 5521]
gi|237667734|ref|ZP_04527718.1| peptide deformylase [Clostridium butyricum E4 str. BoNT E BL5262]
gi|182375711|gb|EDT73311.1| polypeptide deformylase [Clostridium butyricum 5521]
gi|237656082|gb|EEP53638.1| peptide deformylase [Clostridium butyricum E4 str. BoNT E BL5262]
Length = 146
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY DG+GL+APQVGI +L V + G+G +V +NP + + S K I EEGC
Sbjct: 35 MLETMYDADGVGLAAPQVGILKRLFVIDI----GDGP-LVFINPEIIETSGKQID-EEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PG +V RP V+ A + G F + +L AR HE+DHL G LF +R+
Sbjct: 89 LSLPGKMEEVMRPNYVRARALNEKGQEFEIEAEELLARAILHEYDHLNGTLFIDRVN 145
>gi|332139430|ref|YP_004425168.1| peptide deformylase [Alteromonas macleodii str. 'Deep ecotype']
gi|410859674|ref|YP_006974908.1| peptide deformylase [Alteromonas macleodii AltDE1]
gi|238693290|sp|B4S291.1|DEF_ALTMD RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|327549452|gb|AEA96170.1| peptide deformylase [Alteromonas macleodii str. 'Deep ecotype']
gi|410816936|gb|AFV83553.1| peptide deformylase [Alteromonas macleodii AltDE1]
Length = 169
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 74/129 (57%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ M +GIGL+A QV +VQ++V + ++ E V +NP + + I EEGC
Sbjct: 35 MFETMKDENGIGLAATQVNRHVQVVVMDVSEDQNEPR--VFINPEITRKDGSTIS-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG +A VER E++ + A D NG F + L A QHE DHL+G LF + ++
Sbjct: 92 LSVPGNYAKVERAEAITVKALDQNGEAFELDAEGLLAICIQHELDHLKGKLFIDYLSPLK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RQRIRKKLE 160
>gi|47569494|ref|ZP_00240174.1| polypeptide deformylase [Bacillus cereus G9241]
gi|47553823|gb|EAL12194.1| polypeptide deformylase [Bacillus cereus G9241]
Length = 156
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 73/118 (61%), Gaps = 6/118 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + M DG+GL+APQVG+++Q+ V + + G+ I L+NP + K ++ P EG
Sbjct: 35 MHETMLIADGVGLAAPQVGVSLQVAVVDIGDDTGK---IELINPSILEKRGEQVGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLSFPG++ +VER + +K+ A++ G F + AR QHE DHL G+LF ++T
Sbjct: 90 CLSFPGLYGEVERADYIKVRAQNRRGKVFLLEAEGFLARAIQHEIDHLHGVLFTSKVT 147
>gi|406920601|gb|EKD58636.1| hypothetical protein ACD_56C00081G0002 [uncultured bacterium]
Length = 163
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 69/124 (55%), Gaps = 5/124 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +G+GL+A QVG +++L V +GE+ VL+NP++ S + EEGC
Sbjct: 35 MLETMYGNNGVGLAATQVGSDLRLCVIEV-----DGEQYVLINPQITSKSKNKVISEEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPG + + R V++ D G + L AR QHE DHL GIL +R++ +
Sbjct: 90 LSFPGQYFPISRYSEVQVRYTDEFGKAAKIKGHGLLARALQHELDHLDGILIIDRVSKNY 149
Query: 121 LDSI 124
L +
Sbjct: 150 LKKL 153
>gi|422348841|ref|ZP_16429733.1| peptide deformylase [Sutterella wadsworthensis 2_1_59BFAA]
gi|404658893|gb|EKB31755.1| peptide deformylase [Sutterella wadsworthensis 2_1_59BFAA]
Length = 170
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+A QVG +++V + E+ +VLVNP + ++ ++ +EEGC
Sbjct: 35 MAETMYAAPGVGLAANQVGSLKRIVVIDITDEKNN--LLVLVNPYIKSHTEELAEFEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS G++ V RP+ V + A+D++G F + + L A QHE DHL G +F + ++
Sbjct: 93 LSLKGLYEKVSRPDGVTVCAQDLDGKPFEIEATGLLAVCLQHELDHLDGTVFIDHLSRLK 152
Query: 121 LDSIREQL 128
D + +L
Sbjct: 153 KDRAKTKL 160
>gi|336179157|ref|YP_004584532.1| peptide deformylase [Frankia symbiont of Datisca glomerata]
gi|334860137|gb|AEH10611.1| Peptide deformylase [Frankia symbiont of Datisca glomerata]
Length = 182
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 81/130 (62%), Gaps = 9/130 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
+ + M++ G+GL+APQ+G+++++ ++ GE G LVNP + +S +++ EEGC
Sbjct: 35 LVESMHEAGGVGLAAPQLGVSLRVFTYHVDGEVGH-----LVNPVLGPFSEELMDGEEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG+ +++RPE V ++++G ++ S L +R QHE DHL G+LF +R+ +
Sbjct: 90 LSLPGLSFELKRPERVIAVGQNVHGDPVTIEGSGLLSRCVQHETDHLDGVLFIDRLDPET 149
Query: 121 ----LDSIRE 126
+ +IRE
Sbjct: 150 KKAAMKAIRE 159
>gi|84500579|ref|ZP_00998828.1| peptide deformylase [Oceanicola batsensis HTCC2597]
gi|84391532|gb|EAQ03864.1| peptide deformylase [Oceanicola batsensis HTCC2597]
Length = 172
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 70/129 (54%), Gaps = 6/129 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-EGEEIVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+ PQ+G+ +L+V + V E +V+ NPRV S++ YEEG
Sbjct: 34 MLETMYDAPGIGLAGPQIGLMARLIVLDCVKEETLPPRPLVMFNPRVVASSDEKSVYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +A+VERP V ++ D +G S L A QHE DHL G LF D
Sbjct: 94 CLSIPDQYAEVERPAEVTVEWLDRDGVLQEESFDGLWATCVQHEIDHLNGKLFI-----D 148
Query: 120 VLDSIREQL 128
+ I+ Q+
Sbjct: 149 YISPIKRQM 157
>gi|451941377|ref|YP_007462014.1| polypeptide deformylase [Bartonella vinsonii subsp. berkhoffii str.
Winnie]
gi|451900764|gb|AGF75226.1| polypeptide deformylase [Bartonella vinsonii subsp. berkhoffii str.
Winnie]
Length = 176
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 68/117 (58%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+A Q+GI ++++V + G +V++NP + S + Y+EGC
Sbjct: 35 MLETMYHAKGVGLAAIQIGIPLRMLVIDVSGNDDAKNPLVIINPEILWLSEERSIYKEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP+ + + +D G + + +L A QHE DHL G LF + ++
Sbjct: 95 LSIPEYYAEVERPKRLCVRYQDHEGKQTEIEADNLLATCLQHEIDHLNGCLFIDHIS 151
>gi|423395832|ref|ZP_17373033.1| peptide deformylase 1 [Bacillus cereus BAG2X1-1]
gi|423406708|ref|ZP_17383857.1| peptide deformylase 1 [Bacillus cereus BAG2X1-3]
gi|401653574|gb|EJS71118.1| peptide deformylase 1 [Bacillus cereus BAG2X1-1]
gi|401659998|gb|EJS77481.1| peptide deformylase 1 [Bacillus cereus BAG2X1-3]
Length = 156
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 73/118 (61%), Gaps = 6/118 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + M DG+GL+APQVG+++Q+ V + + G+ I L+NP + K ++ P EG
Sbjct: 35 MHETMLIADGVGLAAPQVGVSLQVAVVDIDDDTGK---IELINPSILEKRGEQLGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLSFPG++ +VER + +K+ A++ G F + AR QHE DHL G+LF ++T
Sbjct: 90 CLSFPGLYGEVERADYIKVRAQNRRGKIFLLEAEGFLARAIQHEIDHLHGVLFTSKVT 147
>gi|332299918|ref|YP_004441839.1| Peptide deformylase [Porphyromonas asaccharolytica DSM 20707]
gi|332176981|gb|AEE12671.1| Peptide deformylase [Porphyromonas asaccharolytica DSM 20707]
Length = 188
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 78/134 (58%), Gaps = 5/134 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGER---GEGEEIVLVNPRVNKYSNKMIP 55
M+ MY++DG+GL+APQ+G N++L V + P+ E ++V++N + S +
Sbjct: 36 MWQTMYESDGVGLAAPQIGRNIRLQVIDATPLAEEYPECAQLKLVMINAHMQSLSEETCS 95
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
EGCLS PGI+ V RPES+ +D + + LS ARV QHE+DHL G LF +
Sbjct: 96 EPEGCLSLPGINERVVRPESIVVDYMNEQFEPQHLELSGFAARVVQHEYDHLDGKLFVDH 155
Query: 116 MTDDVLDSIREQLE 129
++ I+++L+
Sbjct: 156 ISAMRKRMIKKKLQ 169
>gi|260588060|ref|ZP_05853973.1| peptide deformylase [Blautia hansenii DSM 20583]
gi|331082371|ref|ZP_08331497.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
gi|260541587|gb|EEX22156.1| peptide deformylase [Blautia hansenii DSM 20583]
gi|330400857|gb|EGG80458.1| peptide deformylase [Lachnospiraceae bacterium 6_1_63FAA]
Length = 159
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 67/114 (58%), Gaps = 5/114 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ G+GL+APQVGI Q++V + GE + IVL+NP + + S EEGC
Sbjct: 35 MFDTMYEAYGVGLAAPQVGILKQIVVIDTTGE----DPIVLINPEIIETSGSQTG-EEGC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
LS PG+ V RP VK+ A D + F + +L AR HE DHL G L+ E
Sbjct: 90 LSVPGMSGVVTRPNYVKVRAFDEDMQEFILEGEELLARAICHETDHLHGRLYTE 143
>gi|46199964|ref|YP_005631.1| peptide deformylase [Thermus thermophilus HB27]
gi|55980290|ref|YP_143587.1| peptide deformylase [Thermus thermophilus HB8]
gi|1169265|sp|P43522.1|DEF_THETH RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|81678630|sp|Q5SLH2.1|DEF_THET8 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|81699227|sp|Q72H33.1|DEF_THET2 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|602914|emb|CAA55695.1| N-formylmethionylaminoacyl-tRNA deformylase [Thermus thermophilus]
gi|46197591|gb|AAS82004.1| polypeptide deformylase, fms protein-like protein [Thermus
thermophilus HB27]
gi|55771703|dbj|BAD70144.1| polypeptide deformylase [Thermus thermophilus HB8]
Length = 192
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 74/128 (57%), Gaps = 13/128 (10%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-----------IVLVNPRVNKY 49
M + M++ G+GL+APQ+G++ +L V + EGEE V+ NP V Y
Sbjct: 33 MLETMFEAKGVGLAAPQIGLSQRLFVAVEYADEPEGEEERPLRELVRRVYVVANP-VITY 91
Query: 50 SNKMIPYEEGCLSFPGIHAD-VERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
++ EGCLS PG++++ V R E ++++ +D G + L ARVFQHE DHL
Sbjct: 92 REGLVEGTEGCLSLPGLYSEEVPRAERIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLD 151
Query: 109 GILFFERM 116
GILFFER+
Sbjct: 152 GILFFERL 159
>gi|421080412|ref|ZP_15541345.1| Peptide deformylase [Pectobacterium wasabiae CFBP 3304]
gi|401704844|gb|EJS95034.1| Peptide deformylase [Pectobacterium wasabiae CFBP 3304]
Length = 170
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+A QV I+ +++V + ER + +VL+NP + + S + EEGC
Sbjct: 35 MFDTMYEEEGIGLAATQVDIHQRIIVIDVSEERDQ--RLVLINPELIEKSGET-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P A V R E VK+ A D G F + S+L A QHE DHL G LF + ++
Sbjct: 92 LSIPETRALVPRAEHVKVRALDREGKVFELEASELLAICIQHEMDHLVGKLFIDYLSPLK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RQRIRQKLE 160
>gi|374850911|dbj|BAL53887.1| peptide deformylase [uncultured Acidobacteria bacterium]
gi|374851663|dbj|BAL54616.1| peptide deformylase [uncultured Acidobacteria bacterium]
Length = 169
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY G+GL+APQ+G+N +L V + G R E +VL+NP + + + EEGC
Sbjct: 34 MFETMYAARGVGLAAPQIGVNRRLFVMDCSGGRDAAERVVLINPEILA-TEGEVVEEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PG++A V RP V D++ ++ ++ L AR HE DHL G L+ R++
Sbjct: 93 LSLPGLYAKVARPYRVLARGLDLDQREITLEVTGLAARCVCHEVDHLDGRLYISRLS 149
>gi|357588723|ref|ZP_09127389.1| peptide deformylase [Corynebacterium nuruki S6-4]
Length = 166
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 71/131 (54%), Gaps = 9/131 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ M G+GL+A QVG+ ++ V++ G+RG +VNP + + EGC
Sbjct: 36 MFETMDAAGGVGLAANQVGVTRRVFVYDCHGDRGH-----IVNPVWSAVGGETQTGREGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD- 119
LS P + DV R +SV + ++G +S L AR QHE DHL G++FF+RM D
Sbjct: 91 LSVPEVGGDVTRAQSVHVTGVTVDGEPVDREVSGLLARCVQHETDHLDGVMFFQRMAADD 150
Query: 120 ---VLDSIREQ 127
V+ IRE
Sbjct: 151 RRTVMSGIRES 161
>gi|385873665|gb|AFI92185.1| Peptide deformylase [Pectobacterium sp. SCC3193]
Length = 170
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+A QV I+ +++V + ER + +VL+NP + + S + EEGC
Sbjct: 35 MFDTMYEEEGIGLAATQVDIHQRIIVIDVSEERDQ--RMVLINPELIEKSGET-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P A V R E VK+ A D G F + S+L A QHE DHL G LF + ++
Sbjct: 92 LSIPETRALVPRAEHVKVRALDREGKVFELEASELLAICIQHEMDHLVGKLFIDYLSPLK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RQRIRQKLE 160
>gi|302874748|ref|YP_003843381.1| peptide deformylase [Clostridium cellulovorans 743B]
gi|307690637|ref|ZP_07633083.1| peptide deformylase [Clostridium cellulovorans 743B]
gi|302577605|gb|ADL51617.1| peptide deformylase [Clostridium cellulovorans 743B]
Length = 149
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 67/115 (58%), Gaps = 6/115 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY DG+GL+APQVGI ++ V + GEG IV +NP + + + EGC
Sbjct: 35 MIDTMYDADGVGLAAPQVGILKKIFVIDI----GEGP-IVFINPEILETEGSYVD-SEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
LS PG A+VERP VK+ A + NG F + +L AR HE DHL G L+ +R
Sbjct: 89 LSIPGESAEVERPYKVKVKALNENGEEFILEGEELLARAICHENDHLYGTLYIDR 143
>gi|416068279|ref|ZP_11582714.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
f str. D18P1]
gi|348001177|gb|EGY41931.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
f str. D18P1]
Length = 170
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ GIGL+APQV I +++ + G++ ++VL+NP + + S EEGC
Sbjct: 35 MFDTMYQEGGIGLAAPQVDILQRIITIDIEGDKQN--QLVLINPEILE-SEGETGIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG A V R E V + A D +G F++ L A QHE DHL GILF + ++
Sbjct: 92 LSIPGFRALVPRKEKVTVKALDRHGKEFTLKADGLLAICIQHEIDHLNGILFVDYLSPLK 151
Query: 121 LDSIREQL 128
I+E+L
Sbjct: 152 RQRIKEKL 159
>gi|1072950|pir||A55228 fms protein homolog - Thermus aquaticus (fragment)
Length = 191
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 74/128 (57%), Gaps = 13/128 (10%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-----------IVLVNPRVNKY 49
M + M++ G+GL+APQ+G++ +L V + EGEE V+ NP V Y
Sbjct: 32 MLETMFEAKGVGLAAPQIGLSQRLFVAVEYADEPEGEEERPLRELVRRVYVVANP-VITY 90
Query: 50 SNKMIPYEEGCLSFPGIHAD-VERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
++ EGCLS PG++++ V R E ++++ +D G + L ARVFQHE DHL
Sbjct: 91 REGLVEGTEGCLSLPGLYSEEVPRAERIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLD 150
Query: 109 GILFFERM 116
GILFFER+
Sbjct: 151 GILFFERL 158
>gi|421873663|ref|ZP_16305275.1| peptide deformylase [Brevibacillus laterosporus GI-9]
gi|372457450|emb|CCF14824.1| peptide deformylase [Brevibacillus laterosporus GI-9]
Length = 159
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 8/116 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIV-LVNPRVNKYSNKMIP-YEE 58
M D MY +G+G++APQVGI+ ++ V + G+ V +NP + ++S + Y E
Sbjct: 35 MKDTMYAANGVGIAAPQVGISKRVFVMDC------GDFYVEAINPEIIEFSGEQFENYPE 88
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
GCLS PG+H DV R VK+ A+D +G + + + DL AR QHE DHL G+LF +
Sbjct: 89 GCLSIPGLHGDVRRHMVVKMRAQDRDGNFYELEVDDLEARCIQHELDHLNGVLFID 144
>gi|384227911|ref|YP_005619656.1| peptide deformylase [Buchnera aphidicola str. Ak (Acyrthosiphon
kondoi)]
gi|345538851|gb|AEO08828.1| peptide deformylase [Buchnera aphidicola str. Ak (Acyrthosiphon
kondoi)]
Length = 171
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 68/117 (58%), Gaps = 3/117 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY+ +GIGL+A QV I +Q++V N + E E +VL+NP++ K I EEGC
Sbjct: 35 MIDTMYQEEGIGLAATQVNIQLQIIVINTMEE--EKNNLVLINPKIIKKEGN-ISIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P A + R +K+ A +I G + + + + QHE DHLQG LF + ++
Sbjct: 92 LSIPEYRASIPRYNYIKVQAINIYGEKIEIEAESILSICIQHEIDHLQGKLFIDYLS 148
>gi|333891511|ref|YP_004465386.1| peptide deformylase [Alteromonas sp. SN2]
gi|332991529|gb|AEF01584.1| peptide deformylase [Alteromonas sp. SN2]
Length = 169
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ M +GIGL+A QV +VQ++V N ++ E V +NP + K I EEGC
Sbjct: 35 MFETMKDENGIGLAATQVDRHVQVVVMNVAEDQDEPR--VFINPEITKKDGSTIS-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG +A VER E + + A + NG F + L A QHE DHL+G LF + ++
Sbjct: 92 LSVPGNYAKVERAEEITVKALNENGEAFELEADGLLAICIQHELDHLKGKLFIDYLSPLK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RQRIRKKLE 160
>gi|103485746|ref|YP_615307.1| peptide deformylase [Sphingopyxis alaskensis RB2256]
gi|98975823|gb|ABF51974.1| peptide deformylase [Sphingopyxis alaskensis RB2256]
Length = 180
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 72/125 (57%), Gaps = 8/125 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--------PVGERGEGEEIVLVNPRVNKYSNK 52
MF+ MY GIGL+A QVG+ +++V + P G++ V +NP + +S++
Sbjct: 38 MFETMYDAPGIGLAAIQVGVPKRILVIDLQEADPEDPEGKKVIRTPRVFINPVFSDFSDE 97
Query: 53 MIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILF 112
Y+EGCLS P +ADV RP V +D +D +G ++ L A QHE DHL+GILF
Sbjct: 98 HSVYQEGCLSVPEQYADVTRPAEVTVDWQDEDGKHHQERMTGLMATCIQHEHDHLEGILF 157
Query: 113 FERMT 117
+ ++
Sbjct: 158 IDHLS 162
>gi|374601036|ref|ZP_09674038.1| peptide deformylase [Myroides odoratus DSM 2801]
gi|423326172|ref|ZP_17304011.1| peptide deformylase [Myroides odoratimimus CIP 103059]
gi|373912506|gb|EHQ44355.1| peptide deformylase [Myroides odoratus DSM 2801]
gi|404604185|gb|EKB03821.1| peptide deformylase [Myroides odoratimimus CIP 103059]
Length = 195
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 80/140 (57%), Gaps = 17/140 (12%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGE----RGEGEEIV------LVNPRVNK 48
M+D MY G+GL+APQVG+ ++L V + P E E +E + +N ++ K
Sbjct: 34 MYDTMYSASGVGLAAPQVGLPIRLFVVDCAPFAEIEDNTPEEKEFLTKYKRTFINAKIIK 93
Query: 49 YSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
+ + EGCLS P +H V R E + I+ D N +++ +++ L ARV QHE+DH++
Sbjct: 94 EEGEEWAFNEGCLSIPDVHELVVRKEQITIEYCDENFTKYTETINGLAARVIQHEYDHIE 153
Query: 109 GILFFERMTDDVLDSIREQL 128
GILF D L S++++L
Sbjct: 154 GILF-----TDKLSSLKKKL 168
>gi|389756174|ref|ZP_10191406.1| peptide deformylase [Rhodanobacter sp. 115]
gi|388431872|gb|EIL88916.1| peptide deformylase [Rhodanobacter sp. 115]
Length = 178
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 68/123 (55%), Gaps = 5/123 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN-----PVGERGEGEEIVLVNPRVNKYSNKMIP 55
MFD M+ DG+GL+APQ+G+++QL++F + E + +L+NP + S M
Sbjct: 37 MFDTMHAADGVGLAAPQIGVDLQLVIFGFEHSERYPDAPEVPQTILLNPAITPLSQDMEE 96
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
EGCLS PG+ V R ++ D GA+ + ARV QHE DHL G L+ R
Sbjct: 97 GWEGCLSVPGLRGAVSRYTLIRYQGLDPKGAKIDRTAEGFHARVVQHECDHLIGRLYPSR 156
Query: 116 MTD 118
+TD
Sbjct: 157 ITD 159
>gi|429205990|ref|ZP_19197258.1| Peptide deformylase [Rhodobacter sp. AKP1]
gi|428190711|gb|EKX59255.1| Peptide deformylase [Rhodobacter sp. AKP1]
Length = 177
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGER-GEGEEIVLVNPRVNKYSNKMIPYEEG 59
M MY GIGL+APQVG+ +L+V + E G + +VNP V S + YEEG
Sbjct: 34 MLATMYDAPGIGLAAPQVGVTRRLIVLDCNKESDGARRPVAMVNPEVVWRSEDVSTYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
CLS P + A+VERP VK+ ++G + L A QHE DHL G LF +
Sbjct: 94 CLSLPNVFAEVERPAEVKVRWTGLDGRDEEEQFAGLWATCVQHEIDHLDGKLFID 148
>gi|269119796|ref|YP_003307973.1| peptide deformylase [Sebaldella termitidis ATCC 33386]
gi|268613674|gb|ACZ08042.1| peptide deformylase [Sebaldella termitidis ATCC 33386]
Length = 162
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 72/117 (61%), Gaps = 5/117 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + M + G+GL+A QVG+ + V GE +G ++NP + ++ + I EEGC
Sbjct: 32 MVETMREESGVGLAANQVGLTQRFFV----GEV-DGNVKKIINPEIIEFGKEEIELEEGC 86
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ V+RPE +K+ ++ G L+++ ARVFQHE DHL GILF ++++
Sbjct: 87 LSIPGIYKRVKRPEKIKVRYQNEKGETVEEELNEVWARVFQHELDHLDGILFIDKIS 143
>gi|403060217|ref|YP_006648434.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
PCC21]
gi|402807543|gb|AFR05181.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
PCC21]
Length = 170
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+A QV I+ +++V + ER + +VL+NP + + S EEGC
Sbjct: 35 MFDTMYEEEGIGLAATQVDIHQRIIVIDVSEERDQ--RLVLINPELIEKSGDT-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P A V R E VK+ A D G F + S+L A QHE DHL G LF + ++
Sbjct: 92 LSIPETRALVPRAEHVKVRALDREGKAFELEASELLAICIQHEMDHLVGKLFIDYLSPLK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RQRIRQKLE 160
>gi|227328917|ref|ZP_03832941.1| peptide deformylase [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 170
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+A QV I+ +++V + ER + +VL+NP + + S EEGC
Sbjct: 35 MFDTMYEEEGIGLAATQVDIHQRIIVIDVSEERDQ--RLVLINPELIEKSGDT-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P A V R E VK+ A D G F + S+L A QHE DHL G LF + ++
Sbjct: 92 LSIPETRALVPRAEHVKVRALDREGKAFELEASELLAICIQHEMDHLVGKLFIDYLSPLK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RQRIRQKLE 160
>gi|50122919|ref|YP_052086.1| peptide deformylase [Pectobacterium atrosepticum SCRI1043]
gi|81693081|sp|Q6D002.1|DEF_ERWCT RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|49613445|emb|CAG76896.1| peptide deformylase [Pectobacterium atrosepticum SCRI1043]
Length = 169
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+A QV I+ +++V + ER + +VL+NP + + S EEGC
Sbjct: 35 MFDTMYEEEGIGLAATQVDIHQRIIVIDVSEERDQ--RLVLINPELIEKSGDT-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P A V R E VK+ A D G F + S+L A QHE DHL G LF + ++
Sbjct: 92 LSIPETRALVPRAEHVKVRALDREGKAFELEASELLAICIQHEMDHLVGKLFIDYLSPLK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RQRIRQKLE 160
>gi|300854442|ref|YP_003779426.1| N-formylmethionyl-tRNA deformylase [Clostridium ljungdahlii DSM
13528]
gi|300434557|gb|ADK14324.1| N-formylmethionyl-tRNA deformylase [Clostridium ljungdahlii DSM
13528]
Length = 152
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 6/116 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + +Y+ DG+GL+APQVG+ +++V + GEG + LVNP + K + E GC
Sbjct: 35 MEETLYEEDGVGLAAPQVGVLKRVIVIDV----GEGI-LKLVNPEITYSEGKAVDIE-GC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LS PG +VERP+ VK+ A + G + DL AR HE DHL GILF +++
Sbjct: 89 LSIPGSEGEVERPKKVKVKALNEKGEEIVIEGEDLLARALCHEIDHLNGILFIDKI 144
>gi|261866825|ref|YP_003254747.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D11S-1]
gi|365966643|ref|YP_004948205.1| peptide deformylase [Aggregatibacter actinomycetemcomitans ANH9381]
gi|387121463|ref|YP_006287346.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D7S-1]
gi|415756702|ref|ZP_11481142.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D17P-3]
gi|416035791|ref|ZP_11573561.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
a str. H5P1]
gi|416049154|ref|ZP_11576473.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
d str. I63B]
gi|261412157|gb|ACX81528.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D11S-1]
gi|347991970|gb|EGY33408.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
d str. I63B]
gi|347997199|gb|EGY38223.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
a str. H5P1]
gi|348655724|gb|EGY71164.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D17P-3]
gi|365745556|gb|AEW76461.1| peptide deformylase [Aggregatibacter actinomycetemcomitans ANH9381]
gi|385875955|gb|AFI87514.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D7S-1]
Length = 170
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ GIGL+APQV I +++ + G++ ++VL+NP + + S EEGC
Sbjct: 35 MFDTMYQEGGIGLAAPQVDILQRIITIDIEGDKQN--QLVLINPEILE-SEGETGIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG A V R E V + A D +G F++ L A QHE DHL GILF + ++
Sbjct: 92 LSIPGFRALVPRKEKVTVKALDRHGKEFTLKADGLLAICIQHEIDHLNGILFVDYLSPLK 151
Query: 121 LDSIREQL 128
I+E+L
Sbjct: 152 RQRIKEKL 159
>gi|395760200|ref|ZP_10440869.1| peptide deformylase [Janthinobacterium lividum PAMC 25724]
Length = 180
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 70/117 (59%), Gaps = 2/117 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ G+GL+A QV ++Q+MV + E+ + + VL+NP + S + Y+EGC
Sbjct: 35 MAETMYEAPGVGLAASQVDEHIQMMVIDITEEKNQLQ--VLINPEITWASEEKQIYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PG++ VERP +K+ A D +G +F L A QHE DH+ G +F E ++
Sbjct: 93 LSVPGVYDGVERPARIKVRALDRHGKQFEQEADGLLAVCIQHEMDHMLGKVFVEYLS 149
>gi|310642740|ref|YP_003947498.1| peptide deformylase [Paenibacillus polymyxa SC2]
gi|309247690|gb|ADO57257.1| Peptide deformylase [Paenibacillus polymyxa SC2]
Length = 159
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 70/115 (60%), Gaps = 6/115 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPR-VNKYSNKMIPYEEG 59
M D MY+ +G+GL+APQVGI +L+V + E G I ++NP V + ++ P EG
Sbjct: 29 MADTMYEAEGVGLAAPQVGILKRLIVVDAGDEHGL---IKMINPEIVAEEGEQLGP--EG 83
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
CLS PG++ DV R E V + + G +V+ + L +R FQHE DHL G+LF +
Sbjct: 84 CLSIPGLNGDVRRAEKVTVKGLNREGKAITVTATGLLSRAFQHEIDHLNGVLFTD 138
>gi|357024209|ref|ZP_09086370.1| peptide deformylase [Mesorhizobium amorphae CCNWGS0123]
gi|355543895|gb|EHH13010.1| peptide deformylase [Mesorhizobium amorphae CCNWGS0123]
Length = 176
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 67/117 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY GIGL+A Q+G ++L+V + E V +NP + + S++ YEEGC
Sbjct: 35 MLDTMYDAPGIGLAAIQIGEPLRLLVIDLAKEDETPAPHVFINPEILESSDQRSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP SV++ D +G + L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPASVRVKYLDRDGKLQEMQAEGLMATCLQHEIDHLNGVLFIDHIS 151
>gi|302335855|ref|YP_003801062.1| peptide deformylase [Olsenella uli DSM 7084]
gi|301319695|gb|ADK68182.1| peptide deformylase [Olsenella uli DSM 7084]
Length = 180
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY T+G+GL+APQVG VQL+V + G+ VL+NPRV + EGC
Sbjct: 36 MLEDMYATEGVGLAAPQVGELVQLVVIDVDYADGKRSPYVLINPRVVVADGDEVVGSEGC 95
Query: 61 LSFPGIHADVERPESVKIDARDING--ARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LSFPGI V RP V ++A D++G R+ + ++L A QHE DHL GI + ++
Sbjct: 96 LSFPGITVQVSRPSHVVVEALDLDGDLMRYE-ARNNLLAVCLQHEIDHLHGITMLDHLS 153
>gi|227872147|ref|ZP_03990517.1| peptide deformylase [Oribacterium sinus F0268]
gi|227842005|gb|EEJ52265.1| peptide deformylase [Oribacterium sinus F0268]
Length = 164
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 73/122 (59%), Gaps = 4/122 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +G+GL+APQVGI QL V + G+G V +NP++ + EEGC
Sbjct: 35 MFETMYDANGVGLAAPQVGILKQLFVVDI----GDGVRYVCINPKIEAVGEEEQCGEEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG V RP ++ ++A D N FS+ S AR F HE+DHLQG+L+ E++ D+
Sbjct: 91 LSVPGKEGKVTRPMNIHLEALDQNMEPFSLDASGFLARAFCHEYDHLQGVLYTEKVEGDL 150
Query: 121 LD 122
D
Sbjct: 151 ED 152
>gi|407776883|ref|ZP_11124155.1| peptide deformylase [Nitratireductor pacificus pht-3B]
gi|407301579|gb|EKF20699.1| peptide deformylase [Nitratireductor pacificus pht-3B]
Length = 176
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 70/117 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QVG ++++V + + E +V++NP + S + +EEGC
Sbjct: 35 MLETMYDAPGIGLAAIQVGEPLRMLVIDVADKDEEPAPLVVINPEIVARSTALNVHEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP +V ++ D +G + ++ L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPAAVTVNFTDRDGKQQTIEADGLLATCLQHEIDHLNGVLFIDYLS 151
>gi|416054515|ref|ZP_11579207.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
e str. SCC393]
gi|429733356|ref|ZP_19267596.1| peptide deformylase [Aggregatibacter actinomycetemcomitans Y4]
gi|348003501|gb|EGY44094.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
e str. SCC393]
gi|429154958|gb|EKX97663.1| peptide deformylase [Aggregatibacter actinomycetemcomitans Y4]
Length = 181
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ GIGL+APQV I +++ + G++ ++VL+NP + + S EEGC
Sbjct: 46 MFDTMYQEGGIGLAAPQVDILQRIITIDIEGDKQN--QLVLINPEILE-SEGETGIEEGC 102
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG A V R E V + A D +G F++ L A QHE DHL GILF + ++
Sbjct: 103 LSIPGFRALVPRKEKVTVKALDRHGKEFTLKADGLLAICIQHEIDHLNGILFVDYLSPLK 162
Query: 121 LDSIREQL 128
I+E+L
Sbjct: 163 RQRIKEKL 170
>gi|386041821|ref|YP_005960775.1| peptide deformylase [Paenibacillus polymyxa M1]
gi|343097859|emb|CCC86068.1| peptide deformylase [Paenibacillus polymyxa M1]
Length = 165
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 70/115 (60%), Gaps = 6/115 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPR-VNKYSNKMIPYEEG 59
M D MY+ +G+GL+APQVGI +L+V + E G I ++NP V + ++ P EG
Sbjct: 35 MADTMYEAEGVGLAAPQVGILKRLIVVDAGDEHGL---IKMINPEIVAEEGEQLGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
CLS PG++ DV R E V + + G +V+ + L +R FQHE DHL G+LF +
Sbjct: 90 CLSIPGLNGDVRRAEKVTVKGLNREGKAITVTATGLLSRAFQHEIDHLNGVLFTD 144
>gi|39933698|ref|NP_945974.1| peptide deformylase [Rhodopseudomonas palustris CGA009]
gi|192289055|ref|YP_001989660.1| peptide deformylase [Rhodopseudomonas palustris TIE-1]
gi|81698398|sp|Q6NC51.1|DEF_RHOPA RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|229487564|sp|B3QCH1.1|DEF_RHOPT RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|39647544|emb|CAE26065.1| putative N-formylmethionylaminoacyl-tRNA deformylase
[Rhodopseudomonas palustris CGA009]
gi|192282804|gb|ACE99184.1| peptide deformylase [Rhodopseudomonas palustris TIE-1]
Length = 175
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE--IVLVNPRVNKYSNKMIPYEE 58
MF+ MY+ GIGL+A Q+ V+L+ + V + G+G+ +NP + S++M YEE
Sbjct: 35 MFESMYEAPGIGLAAIQIAEPVRLITMDIVRKEGDGKSDPRAFINPEIVGASSEMNVYEE 94
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
GCLS P +A+VERP++V+I D++G L A QHE DHL G+LF + ++
Sbjct: 95 GCLSIPEYYAEVERPKTVRIRYTDLDGNVKEEDADGLFATCIQHEIDHLNGVLFVDHLS 153
>gi|407009984|gb|EKE25007.1| hypothetical protein ACD_5C00331G0008 [uncultured bacterium]
Length = 161
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 9/129 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +G+GL+A QVG +++L V +GE+ VL+NP++ S + EEGC
Sbjct: 33 MLETMYANNGVGLAATQVGSDLRLCVIET-----DGEQYVLINPQITSKSKNKVISEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDIN--GARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LSFPG + + R V++ R IN G V L AR QHE DHL GIL +R++
Sbjct: 88 LSFPGKYFPISRHSEVQV--RYINEFGKADKVKGHGLLARALQHEIDHLDGILIIDRVSK 145
Query: 119 DVLDSIREQ 127
+ L ++++
Sbjct: 146 NYLKKLQQE 154
>gi|291514572|emb|CBK63782.1| peptide deformylase [Alistipes shahii WAL 8301]
Length = 181
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 72/122 (59%), Gaps = 5/122 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGEG---EEIVLVNPRVNKYSNKMIP 55
MF + + +G+GL+APQ+G +++L + + P E + VNP + ++S +
Sbjct: 34 MFLTLEEAEGVGLAAPQIGKDIRLFIVDCTPWAEEDPSCADYKRAFVNPEIYEFSEEKKT 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
Y EGCLSFPGIHADV R S+++ D + + L A V QHE+DH++G++F +R
Sbjct: 94 YNEGCLSFPGIHADVARSLSIRMRYMDTDFVEHDEEFTGLKAWVIQHEYDHIEGVVFTDR 153
Query: 116 MT 117
+
Sbjct: 154 IA 155
>gi|415770729|ref|ZP_11484998.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D17P-2]
gi|416075605|ref|ZP_11585096.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
b str. SCC1398]
gi|416106943|ref|ZP_11590135.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
c str. SCC2302]
gi|444337067|ref|ZP_21151099.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
b str. SCC4092]
gi|444347192|ref|ZP_21155137.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
c str. AAS4A]
gi|444348294|ref|ZP_21155990.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
b str. S23A]
gi|348005840|gb|EGY46309.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
c str. SCC2302]
gi|348006090|gb|EGY46554.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
b str. SCC1398]
gi|348656635|gb|EGY74244.1| peptide deformylase [Aggregatibacter actinomycetemcomitans D17P-2]
gi|443540760|gb|ELT51287.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
c str. AAS4A]
gi|443547348|gb|ELT56862.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
b str. S23A]
gi|443547679|gb|ELT57131.1| peptide deformylase [Aggregatibacter actinomycetemcomitans serotype
b str. SCC4092]
Length = 181
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ GIGL+APQV I +++ + G++ ++VL+NP + + S EEGC
Sbjct: 46 MFDTMYQEGGIGLAAPQVDILQRIITIDIEGDKQN--QLVLINPEILE-SEGETGIEEGC 102
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG A V R E V + A D +G F++ L A QHE DHL GILF + ++
Sbjct: 103 LSIPGFRALVPRKEKVTVKALDRHGKEFTLKADGLLAICIQHEIDHLNGILFVDYLSPLK 162
Query: 121 LDSIREQL 128
I+E+L
Sbjct: 163 RQRIKEKL 170
>gi|429741019|ref|ZP_19274688.1| peptide deformylase [Porphyromonas catoniae F0037]
gi|429159688|gb|EKY02185.1| peptide deformylase [Porphyromonas catoniae F0037]
Length = 188
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 77/133 (57%), Gaps = 10/133 (7%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGER-GEGEEI--VLVNPRVNKYSNKMIP 55
M++ MY +DGIGL+APQ+G ++L V + P+ E E + +N R+ + S +
Sbjct: 34 MWETMYFSDGIGLAAPQIGRAIRLFVIDADPMKESFPECARLKQTFINARIVERSEETCS 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
EGCLS PGI+ V RP ++ I+ D N + S ARV QHE+DH++GILF
Sbjct: 94 ENEGCLSIPGINERVTRPTTITIEYVDANFQPHRETYSGFAARVIQHEYDHIEGILFI-- 151
Query: 116 MTDDVLDSIREQL 128
D + +IR+QL
Sbjct: 152 ---DQIAAIRKQL 161
>gi|406595023|ref|YP_006746153.1| peptide deformylase [Alteromonas macleodii ATCC 27126]
gi|407681931|ref|YP_006797105.1| peptide deformylase [Alteromonas macleodii str. 'English Channel
673']
gi|406372344|gb|AFS35599.1| peptide deformylase [Alteromonas macleodii ATCC 27126]
gi|407243542|gb|AFT72728.1| peptide deformylase [Alteromonas macleodii str. 'English Channel
673']
Length = 169
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 74/129 (57%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ M +GIGL+A QV +VQ++V + ++ E V +NP + + I EEGC
Sbjct: 35 MFETMKDENGIGLAATQVNRHVQVVVMDVSEDQNEPR--VFINPEIIRKDGSTIS-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG +A VER ES+ + A D NG F + L A QHE DHL+G LF + ++
Sbjct: 92 LSVPGNYAKVERAESITVKALDQNGESFELDAEGLLAICIQHELDHLKGKLFIDYLSPLK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RQRIRKKLE 160
>gi|384261730|ref|YP_005416916.1| Peptide deformylase [Rhodospirillum photometricum DSM 122]
gi|378402830|emb|CCG07946.1| Peptide deformylase [Rhodospirillum photometricum DSM 122]
Length = 183
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 63/117 (53%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+APQVG+ +++V +P E + L NP + S + PYEEGC
Sbjct: 35 MVETMYAAPGIGLAAPQVGVLKRVIVVDPAREGEAPRPMRLANPEILWASEETKPYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P + V RP VK+ D G + L A V QHE DHL G LF + ++
Sbjct: 95 LSVPEQYDTVVRPAQVKVAYLDETGTAREIEADGLLAVVLQHEIDHLNGTLFVDHLS 151
>gi|302671348|ref|YP_003831308.1| polypeptide deformylase [Butyrivibrio proteoclasticus B316]
gi|302395821|gb|ADL34726.1| polypeptide deformylase Def1 [Butyrivibrio proteoclasticus B316]
Length = 163
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 73/123 (59%), Gaps = 5/123 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+ +G+GL+APQVGI ++ V + GE + +V +NP + + S + YE GC
Sbjct: 35 MLETMYEANGVGLAAPQVGILKRIFVIDVTGE----DPMVFINPEILETSGEQTGYE-GC 89
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG V R VK A D++G F + +L AR QHE DHL G ++ +++ ++
Sbjct: 90 LSVPGKSGIVTRANYVKAKATDLDGNEFIIEGEELLARAIQHENDHLNGKMYVDKVEGEL 149
Query: 121 LDS 123
+D+
Sbjct: 150 VDN 152
>gi|319404989|emb|CBI78592.1| polypeptide deformylase [Bartonella sp. AR 15-3]
Length = 171
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 71/124 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+A QVGI ++++V + + +V++NP + S++ Y EGC
Sbjct: 35 MLETMYNAQGVGLAAVQVGIPLRMLVVDISPKDAPKNSLVVINPEILWISDERSVYREGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P A+VERP+ ++I ++ G + + +DL A QHE DHL G LF + ++
Sbjct: 95 LSIPEYFAEVERPKCLRISYKNREGKQEEIEANDLLATCLQHEIDHLNGYLFIDHISKTK 154
Query: 121 LDSI 124
D +
Sbjct: 155 RDMV 158
>gi|188585959|ref|YP_001917504.1| peptide deformylase [Natranaerobius thermophilus JW/NM-WN-LF]
gi|229487487|sp|B2A2K1.1|DEF_NATTJ RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|179350646|gb|ACB84916.1| peptide deformylase [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 156
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 65/115 (56%), Gaps = 4/115 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY+ +GIGL+APQ+GI+ +++V + GE E L+NP + S++ EGC
Sbjct: 35 MLDTMYEAEGIGLAAPQIGISKRVIVVDI----GEDEIYQLINPEIVDTSDEQEKALEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
LS+PG+ V RP V + A + + L AR QHE DHL GI F +R
Sbjct: 91 LSYPGLQGRVTRPVKVTVKALNPQEEEMIIEAEGLLARALQHEIDHLDGITFIDR 145
>gi|42782959|ref|NP_980206.1| peptide deformylase [Bacillus cereus ATCC 10987]
gi|49478423|ref|YP_037928.1| peptide deformylase [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|52141621|ref|YP_085208.1| peptide deformylase [Bacillus cereus E33L]
gi|196035868|ref|ZP_03103270.1| peptide deformylase [Bacillus cereus W]
gi|196038865|ref|ZP_03106173.1| peptide deformylase [Bacillus cereus NVH0597-99]
gi|206976769|ref|ZP_03237673.1| peptide deformylase [Bacillus cereus H3081.97]
gi|217961287|ref|YP_002339855.1| peptide deformylase [Bacillus cereus AH187]
gi|222097312|ref|YP_002531369.1| peptide deformylase [Bacillus cereus Q1]
gi|225865848|ref|YP_002751226.1| peptide deformylase [Bacillus cereus 03BB102]
gi|228916504|ref|ZP_04080070.1| Peptide deformylase 1 [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228928915|ref|ZP_04091947.1| Peptide deformylase 1 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935181|ref|ZP_04098008.1| Peptide deformylase 1 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228947586|ref|ZP_04109876.1| Peptide deformylase 1 [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228987010|ref|ZP_04147136.1| Peptide deformylase 1 [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|229092910|ref|ZP_04224044.1| Peptide deformylase 1 [Bacillus cereus Rock3-42]
gi|229123381|ref|ZP_04252585.1| Peptide deformylase 1 [Bacillus cereus 95/8201]
gi|229140513|ref|ZP_04269068.1| Peptide deformylase 1 [Bacillus cereus BDRD-ST26]
gi|229157443|ref|ZP_04285521.1| Peptide deformylase 1 [Bacillus cereus ATCC 4342]
gi|229174533|ref|ZP_04302065.1| Peptide deformylase 1 [Bacillus cereus MM3]
gi|229197978|ref|ZP_04324692.1| Peptide deformylase 1 [Bacillus cereus m1293]
gi|254721399|ref|ZP_05183188.1| peptide deformylase [Bacillus anthracis str. A1055]
gi|301055358|ref|YP_003793569.1| peptide deformylase [Bacillus cereus biovar anthracis str. CI]
gi|375285790|ref|YP_005106229.1| polypeptide deformylase [Bacillus cereus NC7401]
gi|384181681|ref|YP_005567443.1| peptide deformylase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|402556011|ref|YP_006597282.1| peptide deformylase [Bacillus cereus FRI-35]
gi|423353569|ref|ZP_17331196.1| peptide deformylase 1 [Bacillus cereus IS075]
gi|423374336|ref|ZP_17351674.1| peptide deformylase 1 [Bacillus cereus AND1407]
gi|423401291|ref|ZP_17378464.1| peptide deformylase 1 [Bacillus cereus BAG2X1-2]
gi|423457950|ref|ZP_17434747.1| peptide deformylase 1 [Bacillus cereus BAG5X2-1]
gi|423478005|ref|ZP_17454720.1| peptide deformylase 1 [Bacillus cereus BAG6X1-1]
gi|423567238|ref|ZP_17543485.1| peptide deformylase 1 [Bacillus cereus MSX-A12]
gi|423574527|ref|ZP_17550646.1| peptide deformylase 1 [Bacillus cereus MSX-D12]
gi|423604506|ref|ZP_17580399.1| peptide deformylase 1 [Bacillus cereus VD102]
gi|42738886|gb|AAS42814.1| polypeptide deformylase [Bacillus cereus ATCC 10987]
gi|49329979|gb|AAT60625.1| peptide deformylase [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|51975090|gb|AAU16640.1| peptide deformylase [Bacillus cereus E33L]
gi|195991517|gb|EDX55483.1| peptide deformylase [Bacillus cereus W]
gi|196030588|gb|EDX69187.1| peptide deformylase [Bacillus cereus NVH0597-99]
gi|206745079|gb|EDZ56482.1| peptide deformylase [Bacillus cereus H3081.97]
gi|217064571|gb|ACJ78821.1| peptide deformylase [Bacillus cereus AH187]
gi|221241370|gb|ACM14080.1| peptide deformylase [Bacillus cereus Q1]
gi|225786088|gb|ACO26305.1| peptide deformylase [Bacillus cereus 03BB102]
gi|228585457|gb|EEK43561.1| Peptide deformylase 1 [Bacillus cereus m1293]
gi|228609093|gb|EEK66383.1| Peptide deformylase 1 [Bacillus cereus MM3]
gi|228626170|gb|EEK82919.1| Peptide deformylase 1 [Bacillus cereus ATCC 4342]
gi|228643074|gb|EEK99350.1| Peptide deformylase 1 [Bacillus cereus BDRD-ST26]
gi|228660157|gb|EEL15793.1| Peptide deformylase 1 [Bacillus cereus 95/8201]
gi|228690532|gb|EEL44315.1| Peptide deformylase 1 [Bacillus cereus Rock3-42]
gi|228772788|gb|EEM21228.1| Peptide deformylase 1 [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|228812106|gb|EEM58437.1| Peptide deformylase 1 [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228824546|gb|EEM70351.1| Peptide deformylase 1 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830722|gb|EEM76327.1| Peptide deformylase 1 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843083|gb|EEM88165.1| Peptide deformylase 1 [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|300377527|gb|ADK06431.1| peptide deformylase [Bacillus cereus biovar anthracis str. CI]
gi|324327765|gb|ADY23025.1| peptide deformylase [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|358354317|dbj|BAL19489.1| polypeptide deformylase [Bacillus cereus NC7401]
gi|401089382|gb|EJP97553.1| peptide deformylase 1 [Bacillus cereus IS075]
gi|401094248|gb|EJQ02330.1| peptide deformylase 1 [Bacillus cereus AND1407]
gi|401148334|gb|EJQ55827.1| peptide deformylase 1 [Bacillus cereus BAG5X2-1]
gi|401212052|gb|EJR18798.1| peptide deformylase 1 [Bacillus cereus MSX-D12]
gi|401214326|gb|EJR21056.1| peptide deformylase 1 [Bacillus cereus MSX-A12]
gi|401245126|gb|EJR51484.1| peptide deformylase 1 [Bacillus cereus VD102]
gi|401654281|gb|EJS71824.1| peptide deformylase 1 [Bacillus cereus BAG2X1-2]
gi|401797221|gb|AFQ11080.1| peptide deformylase [Bacillus cereus FRI-35]
gi|402428167|gb|EJV60264.1| peptide deformylase 1 [Bacillus cereus BAG6X1-1]
Length = 156
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 73/118 (61%), Gaps = 6/118 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + M DG+GL+APQVG+++Q+ V + + G+ I L+NP + K ++ P EG
Sbjct: 35 MHETMLIADGVGLAAPQVGVSLQVAVVDIGDDTGK---IELINPSILEKRGEQVGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLSFPG++ +VER + +K+ A++ G F + AR QHE DHL G+LF ++T
Sbjct: 90 CLSFPGLYGEVERADYIKVRAQNRRGKVFLLEAEGFLARAIQHEIDHLHGVLFTSKVT 147
>gi|86604999|ref|YP_473762.1| peptide deformylase [Synechococcus sp. JA-3-3Ab]
gi|86553541|gb|ABC98499.1| peptide deformylase [Synechococcus sp. JA-3-3Ab]
Length = 175
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 73/135 (54%), Gaps = 5/135 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVF----NP-VGERGEGEEIVLVNPRVNKYSNKMIP 55
M + + G+GL+APQVG +Q+++ NP + + E +V+VNPR S + +
Sbjct: 35 MLATLKEAQGVGLAAPQVGFPLQVIIVASRPNPRYPDAPQMEPLVMVNPRPLACSEEQVL 94
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
EGCLS P V R V+++ G+R V D PAR+FQHE+DHL+G LF +R
Sbjct: 95 GWEGCLSVPNCRGLVARSREVEVEYHTPEGSRQRVVWRDFPARIFQHEYDHLRGRLFLDR 154
Query: 116 MTDDVLDSIREQLEI 130
+L Q +I
Sbjct: 155 QPQQLLSEADYQAQI 169
>gi|118479089|ref|YP_896240.1| peptide deformylase [Bacillus thuringiensis str. Al Hakam]
gi|376267763|ref|YP_005120475.1| Peptide deformylase [Bacillus cereus F837/76]
gi|118418314|gb|ABK86733.1| peptide deformylase [Bacillus thuringiensis str. Al Hakam]
gi|364513563|gb|AEW56962.1| Peptide deformylase [Bacillus cereus F837/76]
Length = 156
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 73/118 (61%), Gaps = 6/118 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + M DG+GL+APQVG+++Q+ V + + G+ I L+NP + K ++ P EG
Sbjct: 35 MHETMLIADGVGLAAPQVGVSLQVAVVDIGDDTGK---IELINPSILEKRGEQVGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLSFPG++ +VER + +K+ A++ G F + AR QHE DHL G+LF ++T
Sbjct: 90 CLSFPGLYGEVERADYIKVRAQNRRGKVFLLEAEGFLARAIQHEIDHLHGVLFTSKVT 147
>gi|422940171|ref|ZP_16967518.1| peptide deformylase [Fusobacterium nucleatum subsp. animalis ATCC
51191]
gi|339889893|gb|EGQ79108.1| peptide deformylase [Fusobacterium nucleatum subsp. animalis ATCC
51191]
Length = 174
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+TDG+GL+APQVG++ ++ V + G G ++NP V + + +EEGC
Sbjct: 36 MVETMYETDGVGLAAPQVGVSKRVFVCDD----GNGVVRKIINPIVVPLTEETQEFEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ VERP+ V + + NG + A V QHE DHL GILF E+++
Sbjct: 92 LSVPGIYKKVERPKRVLLKYLNENGEEVEEIAENFLAVVVQHENDHLDGILFVEKIS 148
>gi|56698051|ref|YP_168422.1| peptide deformylase [Ruegeria pomeroyi DSS-3]
gi|56679788|gb|AAV96454.1| peptide deformylase [Ruegeria pomeroyi DSS-3]
Length = 172
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 72/129 (55%), Gaps = 6/129 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGER-GEGEEIVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+G+ +L+V + V E +V+ NPRV S++ YEEG
Sbjct: 34 MLETMYDAPGIGLAAPQIGVLDRLIVLDCVKEESAPARPLVMFNPRVVAASDETNIYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +A+V RP+ V ++ D +G S + L A QHE DHL G LF D
Sbjct: 94 CLSIPEQYAEVTRPKVVDVEWIDRDGKLQSETFDGLWATCVQHEIDHLDGKLFI-----D 148
Query: 120 VLDSIREQL 128
L ++ Q+
Sbjct: 149 YLKPLKRQM 157
>gi|403253397|ref|ZP_10919698.1| peptide deformylase [Thermotoga sp. EMP]
gi|402810931|gb|EJX25419.1| peptide deformylase [Thermotoga sp. EMP]
Length = 164
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 5/128 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY DG+GL+APQVGI+ + V + G G + ++NP + + + EEGC
Sbjct: 33 MIETMYHYDGVGLAAPQVGISQRFFVMDV----GNGP-VAVINPEILEIDPETEVAEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFP I ++ER + +K+ ++ G L ARVFQHEFDHL G+L +R++
Sbjct: 88 LSFPEIFVEIERSKRIKVRYQNTKGEYVEEELEGYAARVFQHEFDHLDGVLIIDRISPAK 147
Query: 121 LDSIREQL 128
+R++L
Sbjct: 148 RLLLRKKL 155
>gi|423550384|ref|ZP_17526711.1| peptide deformylase 1 [Bacillus cereus ISP3191]
gi|401190000|gb|EJQ97050.1| peptide deformylase 1 [Bacillus cereus ISP3191]
Length = 156
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 73/118 (61%), Gaps = 6/118 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + M DG+GL+APQVG+++Q+ V + + G+ I L+NP + K ++ P EG
Sbjct: 35 MHETMLIADGVGLAAPQVGVSLQVAVVDIGDDTGK---IELINPSILEKRGEQVGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLSFPG++ +VER + +K+ A++ G F + AR QHE DHL G+LF ++T
Sbjct: 90 CLSFPGLYGEVERADYIKVRAQNRRGKVFLLEAEGFLARAIQHEIDHLHGVLFTSKVT 147
>gi|238752657|ref|ZP_04614128.1| Peptide deformylase 2 [Yersinia rohdei ATCC 43380]
gi|238709084|gb|EEQ01331.1| Peptide deformylase 2 [Yersinia rohdei ATCC 43380]
Length = 170
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY +GIGL+A QV +++Q++V + R + +VL+NP + + S + EEGC
Sbjct: 35 MFDTMYAEEGIGLAATQVDVHLQIIVIDVSENRDQ--RLVLINPELLEKSGET-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P A V R E VKI A D +G F + DL A QHE DHL G LF + ++
Sbjct: 92 LSIPEQRALVPRAEKVKIRALDRDGKPFELEADDLLAICIQHEMDHLVGKLFVDYLSPLK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RQRIRQKLE 160
>gi|315125137|ref|YP_004067140.1| N-terminal methionine peptide deformylase [Pseudoalteromonas sp.
SM9913]
gi|315013650|gb|ADT66988.1| N-terminal methionine peptide deformylase [Pseudoalteromonas sp.
SM9913]
Length = 168
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+A QV I+ +++V + ER E +VL+NP++ K + EEGC
Sbjct: 35 MLETMYDENGIGLAATQVDIHQRIVVIDVSEERNEP--LVLINPQIIKKDGSTVS-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P +A V+R E+V + A + G F + +L A QHE DHLQG LF + ++
Sbjct: 92 LSVPHSYAKVDRAETVTVAALNEEGKEFILDADELLAICIQHELDHLQGKLFIDYLSPLK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RQRIRKKLE 160
>gi|255037799|ref|YP_003088420.1| peptide deformylase [Dyadobacter fermentans DSM 18053]
gi|254950555|gb|ACT95255.1| peptide deformylase [Dyadobacter fermentans DSM 18053]
Length = 194
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 82/141 (58%), Gaps = 18/141 (12%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN--PVGERGEGE-----------EIVLVNPRVN 47
MF+ M+ +G+GL+APQ+G+N+++ V + P ER E + + +NP +
Sbjct: 34 MFETMHGANGVGLAAPQIGLNIRIFVVDGTPFAERDEDDDDEPDLSLVDFKKTFINPEIL 93
Query: 48 KYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHL 107
+ + + +EEGCLS PGI DV RPE+++I RD++ + S + AR+ QHE+DHL
Sbjct: 94 EETGEEWGFEEGCLSIPGIRGDVYRPETLRIRYRDLDWNEHEETYSGMAARIIQHEYDHL 153
Query: 108 QGILFFERMTDDVLDSIREQL 128
G LF D L ++++Q
Sbjct: 154 LGKLFV-----DYLPTLKKQF 169
>gi|114766695|ref|ZP_01445634.1| N-formylmethionyl tRNA deformylase [Pelagibaca bermudensis
HTCC2601]
gi|114541085|gb|EAU44140.1| N-formylmethionyl tRNA deformylase [Roseovarius sp. HTCC2601]
Length = 165
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 69/116 (59%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G GL+APQVG+ ++ V + + G+ +V ++P++ S++ +EGC
Sbjct: 34 MLETMYDAPGRGLAAPQVGVLKRVFVMDAGWKDGDMTPVVCIDPQILAVSDETAAGDEGC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LS PG+ A+V RP V++ D+NG R A V QHE+DHL G++ F+R+
Sbjct: 94 LSIPGVTANVRRPVWVRMAYTDLNGDRQERRFEGAEAIVAQHEYDHLDGLVHFDRL 149
>gi|196047434|ref|ZP_03114646.1| peptide deformylase [Bacillus cereus 03BB108]
gi|229186107|ref|ZP_04313276.1| Peptide deformylase 1 [Bacillus cereus BGSC 6E1]
gi|196021742|gb|EDX60437.1| peptide deformylase [Bacillus cereus 03BB108]
gi|228597283|gb|EEK54934.1| Peptide deformylase 1 [Bacillus cereus BGSC 6E1]
Length = 156
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 73/118 (61%), Gaps = 6/118 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + M DG+GL+APQVG+++Q+ V + + G+ I L+NP + K ++ P EG
Sbjct: 35 MHETMLIADGVGLAAPQVGVSLQVAVVDIGDDTGK---IELINPSILEKRGEQVGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLSFPG++ +VER + +K+ A++ G F + AR QHE DHL G+LF ++T
Sbjct: 90 CLSFPGLYGEVERADYIKVRAQNRRGKVFLLEAEGFLARAIQHEIDHLHGVLFTSKVT 147
>gi|386855260|ref|YP_006259437.1| Peptide deformylase [Deinococcus gobiensis I-0]
gi|379998789|gb|AFD23979.1| Peptide deformylase [Deinococcus gobiensis I-0]
Length = 208
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 81/146 (55%), Gaps = 21/146 (14%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV--------------FNPVGERGEGEEIVLVNPRV 46
M + M++ G+GL+APQ+G+ V+L V P+ R + V++NP +
Sbjct: 39 MMETMFEQRGVGLAAPQIGLGVRLFVAVEYEDDEEEGGDDDTPLKSRVL-RDFVMINPVI 97
Query: 47 ---NKYSNKMIPYEEGCLSFPGIHAD-VERPESVKIDARDINGARFSVSLSDLPARVFQH 102
NK +K Y+EGCLS PGI+ + V R + + D++G ++ D ARVFQH
Sbjct: 98 AVLNKKKDK--SYQEGCLSIPGIYEEGVPRARQIAVRYTDLDGQERTIEAEDYLARVFQH 155
Query: 103 EFDHLQGILFFERMTDDVLDSIREQL 128
E DHL G+LF +R+ +V D R++L
Sbjct: 156 EIDHLDGVLFLDRLPAEVTDDHRKEL 181
>gi|86137254|ref|ZP_01055832.1| peptide deformylase [Roseobacter sp. MED193]
gi|85826578|gb|EAQ46775.1| peptide deformylase [Roseobacter sp. MED193]
Length = 172
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 71/129 (55%), Gaps = 6/129 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-EGEEIVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+G+ +L+V + E G E + +V+ NP + S + YEEG
Sbjct: 34 MLETMYAAPGIGLAAPQIGVMERLIVLDCEKEEGVEPKPLVMFNPEIISSSEETNVYEEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +A+V RP V++ D NG + + L A QHE DHL G LF D
Sbjct: 94 CLSIPDQYAEVTRPRDVEVQWLDRNGNQQRETFDGLWATCVQHEIDHLDGKLFI-----D 148
Query: 120 VLDSIREQL 128
L ++ Q+
Sbjct: 149 YLKPLKRQM 157
>gi|226357360|ref|YP_002787100.1| peptide deformylase [Deinococcus deserti VCD115]
gi|226319350|gb|ACO47346.1| putative peptide deformylase (polypeptide deformylase) (PDF)
[Deinococcus deserti VCD115]
Length = 220
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 81/144 (56%), Gaps = 17/144 (11%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVF--------------NPVGERGEGEEIVLVNPRV 46
M + M++ G+GL+APQVG+ V++ V P+ R E V++NP +
Sbjct: 51 MLETMFEARGVGLAAPQVGLPVRMFVAVEYEDDEEENEGQDTPLKSRVL-REFVMLNPVL 109
Query: 47 NKYSNKM-IPYEEGCLSFPGIHAD-VERPESVKIDARDINGARFSVSLSDLPARVFQHEF 104
+ K Y+EGCLS PGI+ + V R ++++ D++GA+ ++ D ARVFQHE
Sbjct: 110 SVLDKKKDRSYQEGCLSIPGIYEEGVSRARAIQVRYTDLDGAQRTIQADDYLARVFQHEA 169
Query: 105 DHLQGILFFERMTDDVLDSIREQL 128
DHL GI F +R+ +V + R +L
Sbjct: 170 DHLDGIFFLDRLPPEVTEDYRREL 193
>gi|336450417|ref|ZP_08620868.1| peptide deformylase [Idiomarina sp. A28L]
gi|336282812|gb|EGN76033.1| peptide deformylase [Idiomarina sp. A28L]
Length = 170
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY ++G+GL+A QV ++ +L + + E+G E +V +NP + + + + EEGC
Sbjct: 35 MFETMYSSEGVGLAATQVNVHKRLFIAD-CSEKG-NEPLVFINPVITE-RDGIYENEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFP ++A VER +K+ A D G F L A QHE DHL G LF + ++
Sbjct: 92 LSFPNVYAKVERAGKIKVRALDREGEIFEREAEGLLAICIQHEIDHLNGKLFVDYLSPLK 151
Query: 121 LDSIREQLE 129
D IR++LE
Sbjct: 152 RDRIRKKLE 160
>gi|269836415|ref|YP_003318643.1| peptide deformylase [Sphaerobacter thermophilus DSM 20745]
gi|269785678|gb|ACZ37821.1| peptide deformylase [Sphaerobacter thermophilus DSM 20745]
Length = 177
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN-PVGERGEGE---EIVLVNPRVNKYSNKMIPY 56
M + MY DG+GL+ PQVG+ +++V P G E + E+ L+NP + + S + +
Sbjct: 35 MLETMYAADGVGLAGPQVGVMRRIIVIGVPAGFENEDDPPIEMALINPEIVRASGRQV-G 93
Query: 57 EEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
EGCLS P + +V R V + ARD++ + S AR+ QHE DHL GILF +R+
Sbjct: 94 PEGCLSIPNWYGEVPRAMHVTVKARDLDDREIRIKASGGLARILQHEIDHLDGILFTDRV 153
Query: 117 TD 118
D
Sbjct: 154 ED 155
>gi|440225369|ref|YP_007332460.1| peptide deformylase [Rhizobium tropici CIAT 899]
gi|440036880|gb|AGB69914.1| peptide deformylase [Rhizobium tropici CIAT 899]
Length = 171
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 65/117 (55%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E E +V +NP + S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAIQIGVPRRMLVIDVAREGEEKAPLVFINPEIVASSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP V + D NG L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPARVTVKHLDRNGKEQLTEAEGLLATCVQHEIDHLNGVLFIDYIS 151
>gi|423452832|ref|ZP_17429685.1| peptide deformylase 1 [Bacillus cereus BAG5X1-1]
gi|423470081|ref|ZP_17446825.1| peptide deformylase 1 [Bacillus cereus BAG6O-2]
gi|401139391|gb|EJQ46953.1| peptide deformylase 1 [Bacillus cereus BAG5X1-1]
gi|402437333|gb|EJV69357.1| peptide deformylase 1 [Bacillus cereus BAG6O-2]
Length = 156
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 73/117 (62%), Gaps = 6/117 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + M DG+GL+APQVG+++Q+ V + + G+ I L+NP + K ++ P EG
Sbjct: 35 MHETMLIADGVGLAAPQVGVSLQVAVVDIGDDTGK---IELINPVILEKRGEQVGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
CLSFPG++ +VER + +K+ A++ G F + D AR QHE DHL G+LF ++
Sbjct: 90 CLSFPGLYGEVERADYIKVRAQNRRGKIFLLEADDFLARAIQHEIDHLHGVLFTSKV 146
>gi|339444887|ref|YP_004710891.1| hypothetical protein EGYY_13380 [Eggerthella sp. YY7918]
gi|338904639|dbj|BAK44490.1| hypothetical protein EGYY_13380 [Eggerthella sp. YY7918]
Length = 180
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 63/116 (54%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MYK G GL+APQ+G+ +L+V + E G + +VLVNP + + I EGC
Sbjct: 33 MAKAMYKNAGCGLAAPQLGVTKRLVVVDCDQEDGVQDPLVLVNPVLVDTQGEPIVEGEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LS PGI + RP ++ D++G + + L R QHE DHL GI FER
Sbjct: 93 LSCPGISVPIARPPWARVRYFDLDGEEWEIEGDGLLGRCLQHELDHLDGITMFERC 148
>gi|139436889|ref|ZP_01771049.1| Hypothetical protein COLAER_00020 [Collinsella aerofaciens ATCC
25986]
gi|133776536|gb|EBA40356.1| peptide deformylase [Collinsella aerofaciens ATCC 25986]
Length = 180
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 73/119 (61%), Gaps = 4/119 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNP-VGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
M +M++ G GL+APQ+G +QL+ + ++ + + VL+NP + + S+ ++P+ EG
Sbjct: 37 MKKIMFENGGCGLAAPQIGELIQLVTIDCDYSDKNDYDPYVLINPVIVEQSDHLVPFSEG 96
Query: 60 CLSFPGIHADVERPESVKIDARDI--NGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
CLS PGI ++ERP+ V ++A D+ N R+ + DL QHE DHL G FER+
Sbjct: 97 CLSIPGISCEIERPDHVVVEAYDLDANLIRYEAT-GDLFCVCLQHEIDHLHGNTMFERL 154
>gi|325105696|ref|YP_004275350.1| peptide deformylase [Pedobacter saltans DSM 12145]
gi|324974544|gb|ADY53528.1| peptide deformylase [Pedobacter saltans DSM 12145]
Length = 188
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 5/122 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEI-----VLVNPRVNKYSNKMIP 55
MF+ M +G+GL+APQ+G++++L V + E + + +NP + S K
Sbjct: 34 MFETMDNANGVGLAAPQIGLSIRLFVIDATPFADEDASLASFKKIFINPIITDESGKEWK 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+ EGCLS P I DV R E + I D N + + L ARV QHE+DH+QG LF +R
Sbjct: 94 FNEGCLSIPDIREDVSRKEQITISYFDENWIHHEDTFNGLAARVIQHEYDHIQGKLFTDR 153
Query: 116 MT 117
++
Sbjct: 154 IS 155
>gi|229162803|ref|ZP_04290760.1| Peptide deformylase 1 [Bacillus cereus R309803]
gi|228620685|gb|EEK77554.1| Peptide deformylase 1 [Bacillus cereus R309803]
Length = 156
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 73/118 (61%), Gaps = 6/118 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + M DG+GL+APQVG+++Q+ V + + G+ I L+NP + K ++ P EG
Sbjct: 35 MHETMLIADGVGLAAPQVGVSLQVAVVDIGDDTGK---IELINPAILEKRGEQVGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLSFPG++ +VER + +K+ A++ G F + AR QHE DHL G+LF ++T
Sbjct: 90 CLSFPGLYGEVERADYIKVRAQNRRGKVFLLEAEGFLARAIQHEIDHLHGVLFTSKVT 147
>gi|332298812|ref|YP_004440734.1| Peptide deformylase [Treponema brennaborense DSM 12168]
gi|332181915|gb|AEE17603.1| Peptide deformylase [Treponema brennaborense DSM 12168]
Length = 187
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 74/133 (55%), Gaps = 8/133 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF +M + G+GL+APQVG+ +L V +G V +NP++ S++ YEEGC
Sbjct: 32 MFQLMDEAQGVGLAAPQVGVLKRLFVITA----DDGVRRVFINPQIIATSSETCDYEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD- 119
LS P I+ + RP V + A + +G F++ AR+ QHE DHL GIL+ +R D
Sbjct: 88 LSIPQIYEHITRPAKVTVQAINEHGKPFTLEADGFLARIIQHENDHLDGILYIDRGDPDF 147
Query: 120 ---VLDSIREQLE 129
+DS ++ E
Sbjct: 148 RAKTIDSFEKKAE 160
>gi|452852680|ref|YP_007494364.1| Peptide deformylase [Desulfovibrio piezophilus]
gi|451896334|emb|CCH49213.1| Peptide deformylase [Desulfovibrio piezophilus]
Length = 165
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY++DG+GL+APQVG +++L+ + G + G+ VL+NP + + + + EEGC
Sbjct: 34 MIETMYESDGVGLAAPQVGESIRLICVDQSGPKLRGDLRVLINPEIVECDGQ-VDSEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
LS P ++ V+R E VK++A D G + A + QHE DHL G+ +R
Sbjct: 93 LSCPELNVTVKRKERVKVNALDREGNEICLETDGFLAIILQHEIDHLDGVTLADR 147
>gi|229514651|ref|ZP_04404112.1| peptide deformylase [Vibrio cholerae TMA 21]
gi|229348631|gb|EEO13589.1| peptide deformylase [Vibrio cholerae TMA 21]
Length = 168
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 76/131 (58%), Gaps = 9/131 (6%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ D +Y TD GIGL+APQVG ++V + R + +VL+NP+V SNK + +EG
Sbjct: 34 LLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNRDQ--PLVLINPKVVSGSNKEMG-QEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +ADVER SV ++A D G + SD A V QHE DHL G LF D
Sbjct: 91 CLSVPDYYADVERYTSVVVEALDREGKPLCIETSDFLAIVMQHEIDHLSGNLFI-----D 145
Query: 120 VLDSIREQLEI 130
L +++Q+ +
Sbjct: 146 YLSPLKQQMAM 156
>gi|110678658|ref|YP_681665.1| peptide deformylase [Roseobacter denitrificans OCh 114]
gi|109454774|gb|ABG30979.1| peptide deformylase [Roseobacter denitrificans OCh 114]
Length = 175
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 72/129 (55%), Gaps = 6/129 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE-IVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQVGI +++V + + E G+ +++ NP V S++ YEEG
Sbjct: 37 MLETMYDAPGIGLAAPQVGILQRVVVMDCIKEPGDTPRPVIMFNPEVIATSDETSVYEEG 96
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P A+V RP V++ D +GA S + L A QHE DHL G LF D
Sbjct: 97 CLSIPEQFAEVTRPAEVEVRWMDRDGAAQSEVFTGLWATCAQHEIDHLDGKLFI-----D 151
Query: 120 VLDSIREQL 128
L +R Q+
Sbjct: 152 YLRPLRRQM 160
>gi|299132603|ref|ZP_07025798.1| peptide deformylase [Afipia sp. 1NLS2]
gi|298592740|gb|EFI52940.1| peptide deformylase [Afipia sp. 1NLS2]
Length = 189
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 67/117 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV + ++L+ + + GE V +NP + S+ + YEEGC
Sbjct: 53 MFETMYDAPGIGLAAIQVAVPLRLITMDVSKKEGEKVPRVFINPEILSKSDDVSVYEEGC 112
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P + +VERP SV+I D++G L A QHE DH+ G+LF + ++
Sbjct: 113 LSIPEYYEEVERPASVRIRYMDLDGKVHEEDAEGLFATCIQHEIDHINGVLFIDYLS 169
>gi|300313962|ref|YP_003778054.1| polypeptide deformylase [Herbaspirillum seropedicae SmR1]
gi|300076747|gb|ADJ66146.1| polypeptide deformylase protein [Herbaspirillum seropedicae SmR1]
Length = 172
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+A QV ++ Q++V + V + G+ + V +NP + S Y+EGC
Sbjct: 35 MAETMYAAPGVGLAATQVDVHEQVVVID-VSDDGKNLQ-VFINPEIVWASEDKRVYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+ VERP VK+ A D +G F V +L A QHE DHL+G +F E ++
Sbjct: 93 LSVPGIYDGVERPARVKVRAFDADGKAFEVDADELLAVCIQHEMDHLKGKVFVEYLSPLK 152
Query: 121 LDSIREQLE 129
+ I+ +L+
Sbjct: 153 RNRIKTKLQ 161
>gi|222084707|ref|YP_002543236.1| peptide deformylase [Agrobacterium radiobacter K84]
gi|398379645|ref|ZP_10537765.1| peptide deformylase [Rhizobium sp. AP16]
gi|221722155|gb|ACM25311.1| peptide deformylase [Agrobacterium radiobacter K84]
gi|397722277|gb|EJK82821.1| peptide deformylase [Rhizobium sp. AP16]
Length = 171
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 67/117 (57%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A Q+G+ +++V + E + + +V +NP V S++ YEEGC
Sbjct: 35 MLETMYDAPGIGLAAVQIGVARRMLVIDVAREGEDKQPLVFINPEVVASSDERSVYEEGC 94
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P +A+VERP V + D +G + L A QHE DHL G+LF + ++
Sbjct: 95 LSIPDYYAEVERPARVTVKHIDRDGKEQLIEADGLLATCLQHEIDHLNGVLFIDYIS 151
>gi|407977640|ref|ZP_11158477.1| peptide deformylase [Bacillus sp. HYC-10]
gi|407415893|gb|EKF37474.1| peptide deformylase [Bacillus sp. HYC-10]
Length = 160
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 68/116 (58%), Gaps = 4/116 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI+ ++ V + +GE + I LVNP + + E GC
Sbjct: 35 MYDTMLELDGVGLAAPQIGISKRIAVVD-IGE--DSGRIDLVNPEILEVEGSQTDIE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LSFP ++ VERP VK+ A D G F++ AR HE DHL G+LF ++
Sbjct: 91 LSFPSLYGTVERPNYVKVKAFDKKGKPFTIEAEGFLARALLHEIDHLDGVLFTSKI 146
>gi|108804305|ref|YP_644242.1| peptide deformylase [Rubrobacter xylanophilus DSM 9941]
gi|108765548|gb|ABG04430.1| peptide deformylase [Rubrobacter xylanophilus DSM 9941]
Length = 164
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 76/132 (57%), Gaps = 9/132 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ M + +G+GL+A QVG ++ V E +V+VNP + + S + EEGC
Sbjct: 34 MFETMREHEGVGLAANQVGRLKRIFVAEV-----EDRRLVVVNPAIEEASERTERAEEGC 88
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG+ +VERP +V + ++++G+ + L ARV QHE DHL G+L +R+ +
Sbjct: 89 LSIPGVRVEVERPAAVVLTGQNLDGSPLRIEAEGLLARVLQHETDHLDGVLILDRVDRET 148
Query: 121 ----LDSIREQL 128
L +RE++
Sbjct: 149 RRAALRELRERM 160
>gi|138894692|ref|YP_001125145.1| peptide deformylase [Geobacillus thermodenitrificans NG80-2]
gi|196247688|ref|ZP_03146390.1| peptide deformylase [Geobacillus sp. G11MC16]
gi|134266205|gb|ABO66400.1| Polypeptide deformylase [Geobacillus thermodenitrificans NG80-2]
gi|196212472|gb|EDY07229.1| peptide deformylase [Geobacillus sp. G11MC16]
Length = 157
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 4/116 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M++ M DG+GL+APQVGI Q+ V + E G I L+NP + + + I E GC
Sbjct: 35 MYETMIAADGVGLAAPQVGIAKQVAVVDIGDEHGR---IELINPVIIEARGEQIDVE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LSFPG+ +V R VK+ A++ G F++S + AR QHE DHL G+LF ++
Sbjct: 91 LSFPGLFGEVPRANYVKVRAQNRRGRLFTLSATGFLARALQHEIDHLHGVLFTSKV 146
>gi|423136631|ref|ZP_17124274.1| peptide deformylase [Fusobacterium nucleatum subsp. animalis F0419]
gi|371961785|gb|EHO79409.1| peptide deformylase [Fusobacterium nucleatum subsp. animalis F0419]
Length = 174
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+TDG+GL+APQVG++ ++ V + G G ++NP V + + +EEGC
Sbjct: 36 MVETMYETDGVGLAAPQVGVSKRVFVCDD----GNGVVRKVINPIVVPLTEETQEFEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ VERP+ V + + NG + A V QHE DHL GILF E+++
Sbjct: 92 LSVPGIYKKVERPKRVLLKYLNENGEEVEEIAENFLAVVVQHENDHLDGILFVEKIS 148
>gi|167855659|ref|ZP_02478417.1| peptide deformylase [Haemophilus parasuis 29755]
gi|219871701|ref|YP_002476076.1| peptide deformylase [Haemophilus parasuis SH0165]
gi|254767590|sp|B8F726.1|DEF_HAEPS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|167853231|gb|EDS24487.1| peptide deformylase [Haemophilus parasuis 29755]
gi|219691905|gb|ACL33128.1| N-formylmethionyl-tRNA deformylase [Haemophilus parasuis SH0165]
Length = 170
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 75/128 (58%), Gaps = 3/128 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+APQV + +++ + G++ +IVL+NP + + S + EEGC
Sbjct: 35 MFDTMYEHEGIGLAAPQVNVLKRVITIDIEGDKTN--QIVLINPEILESSGET-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG A V R E + + A + G F++ L A QHE DHL G+LF + ++
Sbjct: 92 LSIPGCRALVPRKEKLTVKALNREGQTFTLEADGLLAICIQHEIDHLNGVLFVDHISQLK 151
Query: 121 LDSIREQL 128
I+E++
Sbjct: 152 RQRIKEKM 159
>gi|410941011|ref|ZP_11372810.1| peptide deformylase [Leptospira noguchii str. 2006001870]
gi|410783570|gb|EKR72562.1| peptide deformylase [Leptospira noguchii str. 2006001870]
Length = 178
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 5/123 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVF-NPVGERGEGE----EIVLVNPRVNKYSNKMIP 55
MFD M +G+GL+APQ+G+ Q++V + ER G E +++NP + +
Sbjct: 38 MFDTMRHAEGVGLAAPQIGVLKQIVVVGSENNERYPGTPDVPERIILNPIITPLTKDTSG 97
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+ EGCLS PG+ VERP +++ D G +F ++ A V+QHE DHL+GIL+ +R
Sbjct: 98 FWEGCLSVPGMRGYVERPNRIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLEGILYVDR 157
Query: 116 MTD 118
+ D
Sbjct: 158 LKD 160
>gi|146276205|ref|YP_001166364.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025]
gi|145554446|gb|ABP69059.1| peptide deformylase [Rhodobacter sphaeroides ATCC 17025]
Length = 177
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 70/130 (53%), Gaps = 8/130 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE--IVLVNPRVNKYSNKMIPYEE 58
M MY GIGL+APQVG+ +L+V + ++ E I ++NP+V S + YEE
Sbjct: 34 MLATMYDAPGIGLAAPQVGVMRRLVVMD-CNKQPEAPRRPIAMINPQVVWASEDLSTYEE 92
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
GCLS P + A+VERP VK+ I+G S L A QHE DHL G LF
Sbjct: 93 GCLSLPNVFAEVERPAEVKVRWTGIDGREEEEQFSGLWATCVQHEIDHLDGKLFI----- 147
Query: 119 DVLDSIREQL 128
D L ++ Q+
Sbjct: 148 DYLRPLKRQM 157
>gi|126668176|ref|ZP_01739137.1| peptide deformylase [Marinobacter sp. ELB17]
gi|126627325|gb|EAZ97961.1| peptide deformylase [Marinobacter sp. ELB17]
Length = 167
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY GIGL+A QV ++ Q++V + + E + V +NP++ + +EGC
Sbjct: 34 MFETMYDAAGIGLAASQVNVHQQIVVMDLSEDNSEPK--VFINPKIGILDGDLEAMQEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +VER E I A D NG F + L A QHE DHL G LF + ++
Sbjct: 92 LSVPGFYEEVERIEHCLIKALDRNGEAFEIEARGLLAVCIQHEMDHLNGKLFVDYLSSLK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RTRIRKKLE 160
>gi|409402673|ref|ZP_11252179.1| polypeptide deformylase [Acidocella sp. MX-AZ02]
gi|409128790|gb|EKM98674.1| polypeptide deformylase [Acidocella sp. MX-AZ02]
Length = 175
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 72/123 (58%), Gaps = 6/123 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVL---VNPRV--NKYSNKMIP 55
M + M+ G+GL+APQV + ++L VF RGEG EI L VNP + N+ + + +
Sbjct: 36 MAETMFDAGGVGLAAPQVHVGLRLFVFRVPPGRGEGAEIPLRAVVNPVITPNEAAGRELG 95
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+E GCLS PG+ A V R +++ D +G F L+ ARV QHE DHL G+L+ R
Sbjct: 96 WE-GCLSIPGLRAAVPRWREIRLSGLDEDGKVFDEVLTGFAARVVQHEADHLDGVLYPMR 154
Query: 116 MTD 118
M D
Sbjct: 155 MED 157
>gi|237744608|ref|ZP_04575089.1| polypeptide deformylase [Fusobacterium sp. 7_1]
gi|260494468|ref|ZP_05814598.1| peptide deformylase [Fusobacterium sp. 3_1_33]
gi|289765343|ref|ZP_06524721.1| polypeptide deformylase [Fusobacterium sp. D11]
gi|336400863|ref|ZP_08581636.1| peptide deformylase [Fusobacterium sp. 21_1A]
gi|229431837|gb|EEO42049.1| polypeptide deformylase [Fusobacterium sp. 7_1]
gi|260197630|gb|EEW95147.1| peptide deformylase [Fusobacterium sp. 3_1_33]
gi|289716898|gb|EFD80910.1| polypeptide deformylase [Fusobacterium sp. D11]
gi|336161888|gb|EGN64879.1| peptide deformylase [Fusobacterium sp. 21_1A]
Length = 174
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY+TDG+GL+APQVG++ ++ V + G G ++NP V + + +EEGC
Sbjct: 36 MVETMYETDGVGLAAPQVGVSKRVFVCDD----GNGVVRKVINPIVVPLTEETQEFEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PGI+ VERP+ V + + NG + A V QHE DHL GILF E+++
Sbjct: 92 LSVPGIYKKVERPKRVLLKYLNENGEEVEEIAENFLAVVVQHENDHLDGILFVEKIS 148
>gi|402829483|ref|ZP_10878359.1| peptide deformylase [Slackia sp. CM382]
gi|402284464|gb|EJU32967.1| peptide deformylase [Slackia sp. CM382]
Length = 182
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 61/114 (53%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +G GL+APQVG+ +L+V + + G I L+NP V + + EEGC
Sbjct: 37 MAKTMYADNGCGLAAPQVGVLKRLIVIDCDQDSGAKNPITLLNPTVIETRGPEVVEEEGC 96
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
LS PGI + RP + D+NG + + L AR QHE DHL GI FE
Sbjct: 97 LSVPGITVPIRRPAYAIVRYTDLNGEDWIIEGDGLLARCLQHEIDHLNGITLFE 150
>gi|402815957|ref|ZP_10865549.1| peptide deformylase Def [Paenibacillus alvei DSM 29]
gi|402506997|gb|EJW17520.1| peptide deformylase Def [Paenibacillus alvei DSM 29]
Length = 158
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY +G+GL+APQ+GI +++V + E G I +VNP + + + EGC
Sbjct: 35 MADTMYHAEGVGLAAPQIGILKRVIVVDVGDEHGL---IGMVNPVILSAEGEQLG-PEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
LS PGI+ DV R + + + D NG ++ D AR FQHE DHL G+LF E
Sbjct: 91 LSIPGINGDVRRHQKITVKGLDRNGREITIEAEDFLARAFQHEIDHLNGVLFTE 144
>gi|374290029|ref|YP_005037114.1| peptide deformylase [Bacteriovorax marinus SJ]
gi|301168570|emb|CBW28160.1| peptide deformylase [Bacteriovorax marinus SJ]
Length = 197
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 78/131 (59%), Gaps = 15/131 (11%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGER-------GEGEEI-------VLVNPRV 46
M MY GIGL+APQ+G +++L V + +R G E + + +NP +
Sbjct: 48 MLFTMYHAPGIGLAAPQIGKSIRLFVMDIDYDREEVTRADGSSEHVLSNFNPMIFINPVI 107
Query: 47 NKYSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDH 106
+ +++ YEEGCLS PGI+ +V+R +++ +D +D+ G + S+ +L + QHE DH
Sbjct: 108 SNKHGEIL-YEEGCLSVPGIYEEVKRAKTITVDYQDMWGEKHSIDADELLSICLQHENDH 166
Query: 107 LQGILFFERMT 117
L+GI+F ER++
Sbjct: 167 LEGIVFLERLS 177
>gi|148270260|ref|YP_001244720.1| peptide deformylase [Thermotoga petrophila RKU-1]
gi|166198525|sp|A5ILS1.1|DEF_THEP1 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|147735804|gb|ABQ47144.1| peptide deformylase [Thermotoga petrophila RKU-1]
Length = 164
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 5/128 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY DG+GL+APQVGI+ + V + G G + ++NP + + + EEGC
Sbjct: 33 MIETMYHYDGVGLAAPQVGISQRFFVMDV----GNGP-VAVINPEILEIDPETEVAEEGC 87
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFP I ++ER + +K+ ++ G L ARVFQHEFDHL G+L +R++
Sbjct: 88 LSFPEIFVEIERSKRIKVRYQNTKGEYVEEVLEGYAARVFQHEFDHLNGVLIIDRISPAK 147
Query: 121 LDSIREQL 128
+R++L
Sbjct: 148 RLLLRKKL 155
>gi|336313697|ref|ZP_08568636.1| peptide deformylase [Shewanella sp. HN-41]
gi|335862718|gb|EGM67910.1| peptide deformylase [Shewanella sp. HN-41]
Length = 170
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 76/131 (58%), Gaps = 7/131 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVG--ERGEGEEIVLVNPRVNKYSNKMIPYEE 58
MF+ MY+ GIGL+A QV + QL+V + ER + V +NP + S EE
Sbjct: 35 MFETMYQEKGIGLAATQVDYHKQLIVIDLQDDVERSK----VFINPEIIASSGDFCN-EE 89
Query: 59 GCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
GCLS PGI+A V+R E V + A D NG F+V ++L A QHE DHL+G LF + ++
Sbjct: 90 GCLSVPGIYAKVDRAEFVTVKALDRNGNEFTVEANELFAICIQHEMDHLKGKLFVDYLSP 149
Query: 119 DVLDSIREQLE 129
I+++LE
Sbjct: 150 LKRQRIKQKLE 160
>gi|308051095|ref|YP_003914661.1| peptide deformylase [Ferrimonas balearica DSM 9799]
gi|307633285|gb|ADN77587.1| peptide deformylase [Ferrimonas balearica DSM 9799]
Length = 175
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 76/135 (56%), Gaps = 8/135 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVF--NPVGERGEGEE---IVLVNPRVNKYSNKMIP 55
M M G+G++APQV ++LM+ P + + +VL+NP + S +++
Sbjct: 36 MLVTMEAAGGVGIAAPQVFEPLRLMIIASRPNARYPDAPQMDPVVLINPEILNTSGELVS 95
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+ EGCLS PGI V RP++V++ D G +SLS PAR+F HEFDHL+G F ++
Sbjct: 96 FVEGCLSVPGIRGTVRRPDNVEVRYLDTQGQPQQLSLSGFPARIFLHEFDHLEGRTFLDQ 155
Query: 116 M---TDDVLDSIREQ 127
+ D + S+ EQ
Sbjct: 156 VDSPADLIAQSVWEQ 170
>gi|325272511|ref|ZP_08138888.1| peptide deformylase [Pseudomonas sp. TJI-51]
gi|324102354|gb|EGB99823.1| peptide deformylase [Pseudomonas sp. TJI-51]
Length = 168
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 80/129 (62%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV ++ Q++V + +R E V +NP V + ++ M Y+EGC
Sbjct: 35 MFETMYEAPGIGLAATQVNVHQQVVVMDLSEDRSEPR--VFINPTVEELTDDMGQYQEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + +V+RP V++ A+D +G F + L A QHEFDHL G LF + ++
Sbjct: 93 LSVPGFYENVDRPLRVRVKAQDRDGKPFELECEGLLAVCVQHEFDHLNGKLFVDYLSQLK 152
Query: 121 LDSIREQLE 129
D I+++LE
Sbjct: 153 RDRIKKKLE 161
>gi|388455536|ref|ZP_10137831.1| polypeptide deformylase [Fluoribacter dumoffii Tex-KL]
Length = 169
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 74/129 (57%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY G+GL+APQ+G+ ++L V + G++ ++V++NP + + +EEGC
Sbjct: 35 MFETMYDARGVGLAAPQIGVGLRLSVIDIEGDKQN--QLVIINPEIVTAEGEK-KFEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG + V R E V + A D NG F ++ L A QHE DH+ G LF + ++
Sbjct: 92 LSVPGAYDTVIRAEKVTVKALDRNGKPFEINAEGLLAECLQHEIDHMNGKLFIDLLSPLK 151
Query: 121 LDSIREQLE 129
R++LE
Sbjct: 152 KAMARKKLE 160
>gi|319778670|ref|YP_004129583.1| peptide deformylase [Taylorella equigenitalis MCE9]
gi|317108694|gb|ADU91440.1| Peptide deformylase [Taylorella equigenitalis MCE9]
gi|399115290|emb|CCG18089.1| peptide deformylase [Taylorella equigenitalis 14/56]
Length = 169
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +G+GL+A QV I+ +++V + ER + +VL+NP + S + + +EEGC
Sbjct: 35 MAETMYAANGVGLAATQVDIHKRIVVIDVSEERNDL--LVLINPEIIGISEEKVIHEEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P I+ +VER V++ A D NG F L A QHE DHL G +F E+++
Sbjct: 93 LSVPTIYDNVERFSEVRVKALDQNGNAFEFKADGLLAICVQHELDHLMGKVFVEKLSALK 152
Query: 121 LDSIREQLE 129
+ I+ +L+
Sbjct: 153 QNRIKTKLK 161
>gi|419838551|ref|ZP_14361976.1| peptide deformylase [Haemophilus haemolyticus HK386]
gi|386910316|gb|EIJ74973.1| peptide deformylase [Haemophilus haemolyticus HK386]
Length = 169
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 73/128 (57%), Gaps = 3/128 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+APQV I +++ + G++ ++VL+NP + S EEGC
Sbjct: 35 MFDTMYQEEGIGLAAPQVDILQRIITIDVEGDKQN--QLVLINPEI-LVSEGETGIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG A V R E V + A D +G F + L A QHE DHL GILF + ++
Sbjct: 92 LSIPGFRALVPRKEKVTVKALDRDGKEFILDADGLLAICIQHEIDHLNGILFVDYLSPLK 151
Query: 121 LDSIREQL 128
I+E+L
Sbjct: 152 RQRIKEKL 159
>gi|269215460|ref|ZP_06159314.1| peptide deformylase [Slackia exigua ATCC 700122]
gi|269130947|gb|EEZ62022.1| peptide deformylase [Slackia exigua ATCC 700122]
Length = 187
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 61/114 (53%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M MY +G GL+APQVG+ +L+V + + G I L+NP V + + EEGC
Sbjct: 42 MAKTMYADNGCGLAAPQVGVLKRLIVIDCDQDSGAKNPITLLNPTVIETRGPEVVEEEGC 101
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
LS PGI + RP + D+NG + + L AR QHE DHL GI FE
Sbjct: 102 LSVPGITVPIRRPAYAIVRYTDLNGEDWIIEGDGLLARCLQHEIDHLNGITLFE 155
>gi|218295865|ref|ZP_03496645.1| peptide deformylase [Thermus aquaticus Y51MC23]
gi|218243603|gb|EED10131.1| peptide deformylase [Thermus aquaticus Y51MC23]
Length = 190
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 77/127 (60%), Gaps = 12/127 (9%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEE----------IVLVNPRVNKYS 50
M + M++ G+GL+APQ+G++ +L V + + EE V+VNP V +
Sbjct: 33 MLETMWEARGVGLAAPQIGLSQRLFVAVEYADEPDEEERPLRDLVRQVYVVVNP-VITHR 91
Query: 51 NKMIPYEEGCLSFPGIHAD-VERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQG 109
++ EGCLS PG++++ V R E ++++ +D G R ++ L ARVFQHE DHL+G
Sbjct: 92 EGLVEGLEGCLSLPGLYSEEVPRAERIRVEFQDEEGRRRTLELEGYMARVFQHEIDHLEG 151
Query: 110 ILFFERM 116
+LFFER+
Sbjct: 152 VLFFERL 158
>gi|171464332|ref|YP_001798445.1| peptide deformylase [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|238692833|sp|B1XSN2.1|DEF_POLNS RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|171193870|gb|ACB44831.1| peptide deformylase [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 171
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY+ G+GL+A QV I+ +++V + E + E +V +NP + S++ + EGC
Sbjct: 35 MADTMYEAPGVGLAATQVDIHERIVVIDVSDE--QNELMVFINPEIVWTSSETKSWREGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS P + +VERP +++ A DI+G F + A QHE DHLQG +F E ++
Sbjct: 93 LSVPEFYDEVERPAEIRVKALDIDGKEFEIEADGSLAVCLQHELDHLQGKVFVEYLS 149
>gi|146313352|ref|YP_001178426.1| peptide deformylase [Enterobacter sp. 638]
gi|167012063|sp|A4WF95.1|DEF_ENT38 RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|145320228|gb|ABP62375.1| peptide deformylase [Enterobacter sp. 638]
Length = 169
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY +GIGL+A QV I+ +++V + V E E E +VL+NP + + S + EEGC
Sbjct: 35 MFDTMYAEEGIGLAATQVDIHKRIIVID-VSENRE-ERLVLINPELLEQSGET-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P A V R E VKI A D +G F + DL A QHE DHL G LF + ++
Sbjct: 92 LSIPEQRALVPRAEKVKIRALDRDGKSFELEADDLLAICIQHEMDHLVGKLFIDYLSPLK 151
Query: 121 LDSIREQLE 129
IR+++E
Sbjct: 152 QQRIRQKVE 160
>gi|116621863|ref|YP_824019.1| peptide deformylase [Candidatus Solibacter usitatus Ellin6076]
gi|116225025|gb|ABJ83734.1| peptide deformylase [Candidatus Solibacter usitatus Ellin6076]
Length = 171
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY G+GL+APQ+G++ ++ V + +++V++NP++ K K EEGC
Sbjct: 35 MFESMYAAKGVGLAAPQIGVSKKIAVIDVSNGENADDKLVIINPKILKIDGKQ-EGEEGC 93
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PG V R V I A++ G F + DL AR F HE DHL G L+ ++
Sbjct: 94 LSIPGFREQVRRARCVTIRAQNAKGEEFEKTGEDLLARAFLHETDHLYGRLYITHIS 150
>gi|255746035|ref|ZP_05419982.1| peptide deformylase [Vibrio cholera CIRS 101]
gi|262162126|ref|ZP_06031141.1| peptide deformylase [Vibrio cholerae INDRE 91/1]
gi|384422664|ref|YP_005632023.1| peptide deformylase [Vibrio cholerae LMA3984-4]
gi|417818897|ref|ZP_12465517.1| peptide deformylase [Vibrio cholerae HE39]
gi|421326763|ref|ZP_15777281.1| peptide deformylase [Vibrio cholerae CP1042(15)]
gi|423867709|ref|ZP_17721503.1| peptide deformylase [Vibrio cholerae HC-60A1]
gi|255735789|gb|EET91187.1| peptide deformylase [Vibrio cholera CIRS 101]
gi|262028201|gb|EEY46859.1| peptide deformylase [Vibrio cholerae INDRE 91/1]
gi|327485372|gb|AEA79778.1| Peptide deformylase [Vibrio cholerae LMA3984-4]
gi|340043611|gb|EGR04569.1| peptide deformylase [Vibrio cholerae HE39]
gi|395933688|gb|EJH44427.1| peptide deformylase [Vibrio cholerae CP1042(15)]
gi|408647311|gb|EKL18839.1| peptide deformylase [Vibrio cholerae HC-60A1]
Length = 145
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 76/131 (58%), Gaps = 9/131 (6%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ D +Y TD GIGL+APQVG ++V + R + +VL+NP+V SNK + +EG
Sbjct: 11 LLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNRDQ--PLVLINPKVVSGSNKEMG-QEG 67
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +ADVER SV ++A D G + SD A V QHE DHL G LF D
Sbjct: 68 CLSVPDYYADVERYTSVVVEALDREGKPLRIETSDFLAIVMQHEIDHLSGNLFI-----D 122
Query: 120 VLDSIREQLEI 130
L +++Q+ +
Sbjct: 123 YLSPLKQQMAM 133
>gi|227115518|ref|ZP_03829174.1| peptide deformylase [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
Length = 170
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MFD MY+ +GIGL+A QV I+ +++V + ER + +VL+NP + + S EEGC
Sbjct: 35 MFDTMYEEEGIGLAATQVDIHQRIIVIDVSEERDQ--RLVLINPELIEKSGDT-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P A V R E VK+ A D G F + S+L A QHE DHL G LF + ++
Sbjct: 92 LSIPETRALVPRAEHVKVRALDREGKPFELEASELLAICIQHEMDHLVGKLFIDYLSPLK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RQRIRQKLE 160
>gi|189485012|ref|YP_001955953.1| peptide deformylase [uncultured Termite group 1 bacterium phylotype
Rs-D17]
gi|238058216|sp|B1GZ10.1|DEF_UNCTG RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|170286971|dbj|BAG13492.1| peptide deformylase [uncultured Termite group 1 bacterium phylotype
Rs-D17]
Length = 168
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL+APQVGI ++ V + + + IV++NP + NK I EEGC
Sbjct: 35 MLETMYSASGVGLAAPQVGILLRFCVIDV--DPNKKSPIVMINPEIISGENK-ITAEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LSFPG + +V R E++ D+NG R + + A+ QHE DHL LF + + D
Sbjct: 92 LSFPGFYGNVNRFENIIAGYTDLNGNRQEIKAQNFLAKALQHEIDHLDAKLFIDYLPDWK 151
Query: 121 LDSI 124
+SI
Sbjct: 152 RESI 155
>gi|325983533|ref|YP_004295935.1| peptide deformylase [Nitrosomonas sp. AL212]
gi|325533052|gb|ADZ27773.1| peptide deformylase [Nitrosomonas sp. AL212]
Length = 167
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY GIGL+A QV ++ +++V + R + +VL+NP + SN + YEEGC
Sbjct: 35 MAETMYAAPGIGLAATQVDVHERVIVIDTSEARND--LLVLINPEITA-SNGISDYEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
LS PGI+ V+R ESVK+ A + G F + L A QHE DHL G +F E
Sbjct: 92 LSVPGIYGKVQRAESVKVRALNAQGESFVLDADGLLAVCIQHEMDHLAGKVFVE 145
>gi|359438231|ref|ZP_09228267.1| peptide deformylase [Pseudoalteromonas sp. BSi20311]
gi|359446419|ref|ZP_09236096.1| peptide deformylase [Pseudoalteromonas sp. BSi20439]
gi|392557232|ref|ZP_10304369.1| peptide deformylase [Pseudoalteromonas undina NCIMB 2128]
gi|358027070|dbj|GAA64516.1| peptide deformylase [Pseudoalteromonas sp. BSi20311]
gi|358039758|dbj|GAA72345.1| peptide deformylase [Pseudoalteromonas sp. BSi20439]
Length = 168
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY +GIGL+A QV I+ +++V + ER E +VL+NP++ K + EEGC
Sbjct: 35 MLETMYDENGIGLAATQVDIHQRIVVIDVSEERDEP--LVLINPQIIKKDGSTVS-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P +A V+R E+V + A + G F + +L A QHE DHLQG LF + ++
Sbjct: 92 LSVPHSYAKVDRAETVTVAALNEEGKEFILDADELLAICIQHELDHLQGKLFIDYLSPLK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RQRIRKKLE 160
>gi|404370885|ref|ZP_10976201.1| peptide deformylase [Clostridium sp. 7_2_43FAA]
gi|226912992|gb|EEH98193.1| peptide deformylase [Clostridium sp. 7_2_43FAA]
Length = 147
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 68/116 (58%), Gaps = 4/116 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY+ DG+GL+APQVGI ++ V + + G V +NP + + S + EEGC
Sbjct: 35 MADTMYEADGVGLAAPQVGILQRIFVIDIYDDYGLR---VFINPEILEVSGSQLG-EEGC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
LS PG ADVERP VK+ A + G F + ++L AR HE DHL G LF + +
Sbjct: 91 LSVPGEVADVERPNYVKVKALNEKGEEFVLEATELLARAILHENDHLNGTLFIDYL 146
>gi|163941605|ref|YP_001646489.1| peptide deformylase [Bacillus weihenstephanensis KBAB4]
gi|229013051|ref|ZP_04170216.1| Peptide deformylase [Bacillus mycoides DSM 2048]
gi|229061470|ref|ZP_04198815.1| Peptide deformylase [Bacillus cereus AH603]
gi|229134675|ref|ZP_04263484.1| Peptide deformylase [Bacillus cereus BDRD-ST196]
gi|229168607|ref|ZP_04296330.1| Peptide deformylase [Bacillus cereus AH621]
gi|423367911|ref|ZP_17345343.1| peptide deformylase 1 [Bacillus cereus VD142]
gi|423483457|ref|ZP_17460147.1| peptide deformylase 1 [Bacillus cereus BAG6X1-2]
gi|423489043|ref|ZP_17465725.1| peptide deformylase 1 [Bacillus cereus BtB2-4]
gi|423494768|ref|ZP_17471412.1| peptide deformylase 1 [Bacillus cereus CER057]
gi|423498440|ref|ZP_17475057.1| peptide deformylase 1 [Bacillus cereus CER074]
gi|423511901|ref|ZP_17488432.1| peptide deformylase 1 [Bacillus cereus HuA2-1]
gi|423518557|ref|ZP_17495038.1| peptide deformylase 1 [Bacillus cereus HuA2-4]
gi|423558570|ref|ZP_17534872.1| peptide deformylase 1 [Bacillus cereus MC67]
gi|423592137|ref|ZP_17568168.1| peptide deformylase 1 [Bacillus cereus VD048]
gi|423598822|ref|ZP_17574822.1| peptide deformylase 1 [Bacillus cereus VD078]
gi|423661293|ref|ZP_17636462.1| peptide deformylase 1 [Bacillus cereus VDM022]
gi|423669441|ref|ZP_17644470.1| peptide deformylase 1 [Bacillus cereus VDM034]
gi|423674380|ref|ZP_17649319.1| peptide deformylase 1 [Bacillus cereus VDM062]
gi|163863802|gb|ABY44861.1| peptide deformylase [Bacillus weihenstephanensis KBAB4]
gi|228615013|gb|EEK72115.1| Peptide deformylase [Bacillus cereus AH621]
gi|228648721|gb|EEL04747.1| Peptide deformylase [Bacillus cereus BDRD-ST196]
gi|228717893|gb|EEL69541.1| Peptide deformylase [Bacillus cereus AH603]
gi|228748305|gb|EEL98165.1| Peptide deformylase [Bacillus mycoides DSM 2048]
gi|401082772|gb|EJP91037.1| peptide deformylase 1 [Bacillus cereus VD142]
gi|401141008|gb|EJQ48563.1| peptide deformylase 1 [Bacillus cereus BAG6X1-2]
gi|401150861|gb|EJQ58313.1| peptide deformylase 1 [Bacillus cereus CER057]
gi|401160489|gb|EJQ67867.1| peptide deformylase 1 [Bacillus cereus CER074]
gi|401160765|gb|EJQ68140.1| peptide deformylase 1 [Bacillus cereus HuA2-4]
gi|401191838|gb|EJQ98860.1| peptide deformylase 1 [Bacillus cereus MC67]
gi|401232270|gb|EJR38772.1| peptide deformylase 1 [Bacillus cereus VD048]
gi|401237092|gb|EJR43549.1| peptide deformylase 1 [Bacillus cereus VD078]
gi|401298568|gb|EJS04168.1| peptide deformylase 1 [Bacillus cereus VDM034]
gi|401301334|gb|EJS06923.1| peptide deformylase 1 [Bacillus cereus VDM022]
gi|401309931|gb|EJS15264.1| peptide deformylase 1 [Bacillus cereus VDM062]
gi|402432291|gb|EJV64350.1| peptide deformylase 1 [Bacillus cereus BtB2-4]
gi|402450162|gb|EJV81996.1| peptide deformylase 1 [Bacillus cereus HuA2-1]
Length = 156
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 73/117 (62%), Gaps = 6/117 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + M DG+GL+APQVG+++Q+ V + + G+ I L+NP + K ++ P EG
Sbjct: 35 MHETMLIADGVGLAAPQVGVSLQVAVVDIGDDTGK---IELINPVILEKRGEQVGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERM 116
CLSFPG++ +VER + +K+ A++ G F + D AR QHE DHL G+LF ++
Sbjct: 90 CLSFPGLYGEVERADYIKVRAQNRRGKIFLLEADDFLARAIQHEIDHLHGVLFTSKV 146
>gi|15600920|ref|NP_232550.1| peptide deformylase [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121587986|ref|ZP_01677739.1| polypeptide deformylase [Vibrio cholerae 2740-80]
gi|121729670|ref|ZP_01682131.1| polypeptide deformylase [Vibrio cholerae V52]
gi|147672038|ref|YP_001215964.1| peptide deformylase [Vibrio cholerae O395]
gi|153819711|ref|ZP_01972378.1| polypeptide deformylase [Vibrio cholerae NCTC 8457]
gi|153822662|ref|ZP_01975329.1| polypeptide deformylase [Vibrio cholerae B33]
gi|153825061|ref|ZP_01977728.1| peptide deformylase [Vibrio cholerae MZO-2]
gi|153830707|ref|ZP_01983374.1| polypeptide deformylase [Vibrio cholerae 623-39]
gi|227119327|ref|YP_002821222.1| polypeptide deformylase [Vibrio cholerae O395]
gi|227811776|ref|YP_002811786.1| polypeptide deformylase [Vibrio cholerae M66-2]
gi|229506685|ref|ZP_04396194.1| peptide deformylase [Vibrio cholerae BX 330286]
gi|229510520|ref|ZP_04400000.1| peptide deformylase [Vibrio cholerae B33]
gi|229517348|ref|ZP_04406793.1| peptide deformylase [Vibrio cholerae RC9]
gi|229527868|ref|ZP_04417259.1| peptide deformylase [Vibrio cholerae 12129(1)]
gi|229605159|ref|YP_002875863.1| peptide deformylase [Vibrio cholerae MJ-1236]
gi|254850416|ref|ZP_05239766.1| peptide deformylase 2 [Vibrio cholerae MO10]
gi|297579720|ref|ZP_06941647.1| polypeptide deformylase [Vibrio cholerae RC385]
gi|298500007|ref|ZP_07009813.1| peptide deformylase [Vibrio cholerae MAK 757]
gi|360038153|ref|YP_004939915.1| peptide deformylase [Vibrio cholerae O1 str. 2010EL-1786]
gi|379743593|ref|YP_005334645.1| peptide deformylase [Vibrio cholerae IEC224]
gi|417812193|ref|ZP_12458854.1| peptide deformylase [Vibrio cholerae HC-49A2]
gi|417816509|ref|ZP_12463139.1| peptide deformylase [Vibrio cholerae HCUF01]
gi|418330051|ref|ZP_12941085.1| peptide deformylase [Vibrio cholerae HC-06A1]
gi|418337409|ref|ZP_12946304.1| peptide deformylase [Vibrio cholerae HC-23A1]
gi|418339578|ref|ZP_12948466.1| peptide deformylase [Vibrio cholerae HC-28A1]
gi|418349079|ref|ZP_12953811.1| peptide deformylase [Vibrio cholerae HC-43A1]
gi|418353356|ref|ZP_12956081.1| peptide deformylase [Vibrio cholerae HC-61A1]
gi|419824183|ref|ZP_14347712.1| peptide deformylase [Vibrio cholerae CP1033(6)]
gi|419828151|ref|ZP_14351642.1| peptide deformylase [Vibrio cholerae HC-1A2]
gi|419833073|ref|ZP_14356534.1| peptide deformylase [Vibrio cholerae HC-61A2]
gi|419836953|ref|ZP_14360393.1| peptide deformylase [Vibrio cholerae HC-46B1]
gi|421317305|ref|ZP_15767875.1| peptide deformylase [Vibrio cholerae CP1032(5)]
gi|421319750|ref|ZP_15770308.1| peptide deformylase [Vibrio cholerae CP1038(11)]
gi|421323793|ref|ZP_15774320.1| peptide deformylase [Vibrio cholerae CP1041(14)]
gi|421331850|ref|ZP_15782329.1| peptide deformylase [Vibrio cholerae CP1046(19)]
gi|421335482|ref|ZP_15785945.1| peptide deformylase [Vibrio cholerae CP1048(21)]
gi|421340879|ref|ZP_15791309.1| peptide deformylase [Vibrio cholerae HC-20A2]
gi|421343739|ref|ZP_15794143.1| peptide deformylase [Vibrio cholerae HC-43B1]
gi|421346510|ref|ZP_15796894.1| peptide deformylase [Vibrio cholerae HC-46A1]
gi|421349831|ref|ZP_15800200.1| peptide deformylase [Vibrio cholerae HE-25]
gi|421355312|ref|ZP_15805643.1| peptide deformylase [Vibrio cholerae HE-45]
gi|422307705|ref|ZP_16394861.1| peptide deformylase [Vibrio cholerae CP1035(8)]
gi|422885319|ref|ZP_16931758.1| peptide deformylase [Vibrio cholerae HC-40A1]
gi|422898030|ref|ZP_16935449.1| peptide deformylase [Vibrio cholerae HC-48A1]
gi|422904187|ref|ZP_16939139.1| peptide deformylase [Vibrio cholerae HC-70A1]
gi|422910448|ref|ZP_16945088.1| peptide deformylase [Vibrio cholerae HE-09]
gi|422915462|ref|ZP_16949911.1| peptide deformylase [Vibrio cholerae HFU-02]
gi|422918748|ref|ZP_16953049.1| peptide deformylase [Vibrio cholerae HC-02A1]
gi|422920436|ref|ZP_16953756.1| peptide deformylase [Vibrio cholerae BJG-01]
gi|422927086|ref|ZP_16960091.1| peptide deformylase [Vibrio cholerae HC-38A1]
gi|423146426|ref|ZP_17133994.1| peptide deformylase [Vibrio cholerae HC-19A1]
gi|423148186|ref|ZP_17135564.1| peptide deformylase [Vibrio cholerae HC-21A1]
gi|423151972|ref|ZP_17139203.1| peptide deformylase [Vibrio cholerae HC-22A1]
gi|423158594|ref|ZP_17145607.1| peptide deformylase [Vibrio cholerae HC-32A1]
gi|423162399|ref|ZP_17149271.1| peptide deformylase [Vibrio cholerae HC-33A2]
gi|423162593|ref|ZP_17149459.1| peptide deformylase [Vibrio cholerae HC-48B2]
gi|423732418|ref|ZP_17705715.1| peptide deformylase [Vibrio cholerae HC-17A1]
gi|423734397|ref|ZP_17707610.1| peptide deformylase [Vibrio cholerae HC-41B1]
gi|423737059|ref|ZP_17710165.1| peptide deformylase [Vibrio cholerae HC-50A2]
gi|423779999|ref|ZP_17714083.1| peptide deformylase [Vibrio cholerae HC-55C2]
gi|423840301|ref|ZP_17717831.1| peptide deformylase [Vibrio cholerae HC-59A1]
gi|423900677|ref|ZP_17728035.1| peptide deformylase [Vibrio cholerae HC-62A1]
gi|423912218|ref|ZP_17728734.1| peptide deformylase [Vibrio cholerae HC-77A1]
gi|423938956|ref|ZP_17732440.1| peptide deformylase [Vibrio cholerae HE-40]
gi|423969087|ref|ZP_17735989.1| peptide deformylase [Vibrio cholerae HE-46]
gi|423999309|ref|ZP_17742502.1| peptide deformylase [Vibrio cholerae HC-02C1]
gi|424000045|ref|ZP_17743202.1| peptide deformylase [Vibrio cholerae HC-17A2]
gi|424004677|ref|ZP_17747682.1| peptide deformylase [Vibrio cholerae HC-37A1]
gi|424008679|ref|ZP_17751627.1| peptide deformylase [Vibrio cholerae HC-44C1]
gi|424011328|ref|ZP_17754196.1| peptide deformylase [Vibrio cholerae HC-55B2]
gi|424021152|ref|ZP_17760922.1| peptide deformylase [Vibrio cholerae HC-59B1]
gi|424021838|ref|ZP_17761547.1| peptide deformylase [Vibrio cholerae HC-62B1]
gi|424028488|ref|ZP_17768085.1| peptide deformylase [Vibrio cholerae HC-69A1]
gi|424587778|ref|ZP_18027350.1| peptide deformylase [Vibrio cholerae CP1030(3)]
gi|424591075|ref|ZP_18030508.1| peptide deformylase [Vibrio cholerae CP1037(10)]
gi|424592590|ref|ZP_18032005.1| peptide deformylase [Vibrio cholerae CP1040(13)]
gi|424596450|ref|ZP_18035757.1| peptide deformylase [Vibrio Cholerae CP1044(17)]
gi|424603304|ref|ZP_18042438.1| peptide deformylase [Vibrio cholerae CP1047(20)]
gi|424604094|ref|ZP_18043137.1| peptide deformylase [Vibrio cholerae CP1050(23)]
gi|424608044|ref|ZP_18046978.1| peptide deformylase [Vibrio cholerae HC-39A1]
gi|424614682|ref|ZP_18053462.1| peptide deformylase [Vibrio cholerae HC-41A1]
gi|424617166|ref|ZP_18055851.1| peptide deformylase [Vibrio cholerae HC-42A1]
gi|424619475|ref|ZP_18058078.1| peptide deformylase [Vibrio cholerae HC-47A1]
gi|424626367|ref|ZP_18064817.1| peptide deformylase [Vibrio cholerae HC-50A1]
gi|424627262|ref|ZP_18065626.1| peptide deformylase [Vibrio cholerae HC-51A1]
gi|424631059|ref|ZP_18069282.1| peptide deformylase [Vibrio cholerae HC-52A1]
gi|424637975|ref|ZP_18075972.1| peptide deformylase [Vibrio cholerae HC-55A1]
gi|424641876|ref|ZP_18079748.1| peptide deformylase [Vibrio cholerae HC-56A1]
gi|424643132|ref|ZP_18080910.1| peptide deformylase [Vibrio cholerae HC-56A2]
gi|424646391|ref|ZP_18084119.1| peptide deformylase [Vibrio cholerae HC-57A1]
gi|424650197|ref|ZP_18087800.1| peptide deformylase [Vibrio cholerae HC-57A2]
gi|424655028|ref|ZP_18092346.1| peptide deformylase [Vibrio cholerae HC-81A2]
gi|424659990|ref|ZP_18097238.1| peptide deformylase [Vibrio cholerae HE-16]
gi|440711116|ref|ZP_20891757.1| peptide deformylase [Vibrio cholerae 4260B]
gi|443505221|ref|ZP_21072162.1| peptide deformylase [Vibrio cholerae HC-64A1]
gi|443509120|ref|ZP_21075870.1| peptide deformylase [Vibrio cholerae HC-65A1]
gi|443512964|ref|ZP_21079587.1| peptide deformylase [Vibrio cholerae HC-67A1]
gi|443516509|ref|ZP_21083009.1| peptide deformylase [Vibrio cholerae HC-68A1]
gi|443521213|ref|ZP_21087543.1| peptide deformylase [Vibrio cholerae HC-71A1]
gi|443521371|ref|ZP_21087693.1| peptide deformylase [Vibrio cholerae HC-72A2]
gi|443525188|ref|ZP_21091384.1| peptide deformylase [Vibrio cholerae HC-78A1]
gi|443530144|ref|ZP_21096161.1| peptide deformylase [Vibrio cholerae HC-7A1]
gi|443532791|ref|ZP_21098794.1| peptide deformylase [Vibrio cholerae HC-80A1]
gi|443537509|ref|ZP_21103367.1| peptide deformylase [Vibrio cholerae HC-81A1]
gi|449058218|ref|ZP_21736514.1| Peptide deformylase [Vibrio cholerae O1 str. Inaba G4222]
gi|23396575|sp|Q9KN16.1|DEF2_VIBCH RecName: Full=Peptide deformylase 2; Short=PDF 2; AltName:
Full=Polypeptide deformylase 2
gi|9657539|gb|AAF96063.1| polypeptide deformylase [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121547784|gb|EAX57873.1| polypeptide deformylase [Vibrio cholerae 2740-80]
gi|121628568|gb|EAX61048.1| polypeptide deformylase [Vibrio cholerae V52]
gi|126509754|gb|EAZ72348.1| polypeptide deformylase [Vibrio cholerae NCTC 8457]
gi|126519819|gb|EAZ77042.1| polypeptide deformylase [Vibrio cholerae B33]
gi|146314421|gb|ABQ18961.1| polypeptide deformylase [Vibrio cholerae O395]
gi|148873804|gb|EDL71939.1| polypeptide deformylase [Vibrio cholerae 623-39]
gi|149741386|gb|EDM55420.1| peptide deformylase [Vibrio cholerae MZO-2]
gi|227010918|gb|ACP07129.1| polypeptide deformylase [Vibrio cholerae M66-2]
gi|227014777|gb|ACP10986.1| polypeptide deformylase [Vibrio cholerae O395]
gi|229334230|gb|EEN99715.1| peptide deformylase [Vibrio cholerae 12129(1)]
gi|229345384|gb|EEO10357.1| peptide deformylase [Vibrio cholerae RC9]
gi|229352965|gb|EEO17905.1| peptide deformylase [Vibrio cholerae B33]
gi|229357036|gb|EEO21954.1| peptide deformylase [Vibrio cholerae BX 330286]
gi|229371645|gb|ACQ62067.1| peptide deformylase [Vibrio cholerae MJ-1236]
gi|254846121|gb|EET24535.1| peptide deformylase 2 [Vibrio cholerae MO10]
gi|297535366|gb|EFH74200.1| polypeptide deformylase [Vibrio cholerae RC385]
gi|297541988|gb|EFH78039.1| peptide deformylase [Vibrio cholerae MAK 757]
gi|340039659|gb|EGR00632.1| peptide deformylase [Vibrio cholerae HCUF01]
gi|340045013|gb|EGR05961.1| peptide deformylase [Vibrio cholerae HC-49A2]
gi|341630231|gb|EGS55334.1| peptide deformylase [Vibrio cholerae HC-70A1]
gi|341630948|gb|EGS55893.1| peptide deformylase [Vibrio cholerae HC-40A1]
gi|341631021|gb|EGS55964.1| peptide deformylase [Vibrio cholerae HC-48A1]
gi|341631951|gb|EGS56827.1| peptide deformylase [Vibrio cholerae HFU-02]
gi|341633581|gb|EGS58381.1| peptide deformylase [Vibrio cholerae HE-09]
gi|341634398|gb|EGS59158.1| peptide deformylase [Vibrio cholerae HC-02A1]
gi|341645134|gb|EGS69290.1| peptide deformylase [Vibrio cholerae HC-38A1]
gi|341650306|gb|EGS74177.1| peptide deformylase [Vibrio cholerae BJG-01]
gi|356421078|gb|EHH74584.1| peptide deformylase [Vibrio cholerae HC-19A1]
gi|356424318|gb|EHH77733.1| peptide deformylase [Vibrio cholerae HC-21A1]
gi|356426558|gb|EHH79866.1| peptide deformylase [Vibrio cholerae HC-06A1]
gi|356430793|gb|EHH83998.1| peptide deformylase [Vibrio cholerae HC-23A1]
gi|356435054|gb|EHH88214.1| peptide deformylase [Vibrio cholerae HC-32A1]
gi|356436521|gb|EHH89635.1| peptide deformylase [Vibrio cholerae HC-22A1]
gi|356440496|gb|EHH93437.1| peptide deformylase [Vibrio cholerae HC-33A2]
gi|356442978|gb|EHH95811.1| peptide deformylase [Vibrio cholerae HC-28A1]
gi|356445941|gb|EHH98741.1| peptide deformylase [Vibrio cholerae HC-43A1]
gi|356454421|gb|EHI07068.1| peptide deformylase [Vibrio cholerae HC-61A1]
gi|356457802|gb|EHI10309.1| peptide deformylase [Vibrio cholerae HC-48B2]
gi|356649307|gb|AET29361.1| peptide deformylase [Vibrio cholerae O1 str. 2010EL-1786]
gi|378796187|gb|AFC59657.1| peptide deformylase [Vibrio cholerae IEC224]
gi|395919763|gb|EJH30586.1| peptide deformylase [Vibrio cholerae CP1032(5)]
gi|395921807|gb|EJH32626.1| peptide deformylase [Vibrio cholerae CP1041(14)]
gi|395924638|gb|EJH35440.1| peptide deformylase [Vibrio cholerae CP1038(11)]
gi|395930648|gb|EJH41394.1| peptide deformylase [Vibrio cholerae CP1046(19)]
gi|395935164|gb|EJH45899.1| peptide deformylase [Vibrio cholerae CP1048(21)]
gi|395938363|gb|EJH49055.1| peptide deformylase [Vibrio cholerae HC-20A2]
gi|395942306|gb|EJH52983.1| peptide deformylase [Vibrio cholerae HC-43B1]
gi|395948037|gb|EJH58692.1| peptide deformylase [Vibrio cholerae HC-46A1]
gi|395949982|gb|EJH60601.1| peptide deformylase [Vibrio cholerae HE-45]
gi|395956448|gb|EJH67042.1| peptide deformylase [Vibrio cholerae HE-25]
gi|395964226|gb|EJH74461.1| peptide deformylase [Vibrio cholerae HC-42A1]
gi|395965938|gb|EJH76075.1| peptide deformylase [Vibrio cholerae HC-56A2]
gi|395969065|gb|EJH78966.1| peptide deformylase [Vibrio cholerae HC-57A2]
gi|395971241|gb|EJH80926.1| peptide deformylase [Vibrio cholerae CP1030(3)]
gi|395972626|gb|EJH82212.1| peptide deformylase [Vibrio cholerae CP1047(20)]
gi|395980451|gb|EJH89702.1| peptide deformylase [Vibrio cholerae HC-47A1]
gi|408009199|gb|EKG47116.1| peptide deformylase [Vibrio cholerae HC-41A1]
gi|408009855|gb|EKG47743.1| peptide deformylase [Vibrio cholerae HC-50A1]
gi|408015529|gb|EKG53110.1| peptide deformylase [Vibrio cholerae HC-39A1]
gi|408021068|gb|EKG58343.1| peptide deformylase [Vibrio cholerae HC-56A1]
gi|408021176|gb|EKG58443.1| peptide deformylase [Vibrio cholerae HC-55A1]
gi|408028930|gb|EKG65770.1| peptide deformylase [Vibrio cholerae HC-52A1]
gi|408033069|gb|EKG69630.1| peptide deformylase [Vibrio cholerae CP1037(10)]
gi|408040852|gb|EKG77004.1| peptide deformylase [Vibrio cholerae HC-57A1]
gi|408042710|gb|EKG78748.1| peptide deformylase [Vibrio cholerae CP1040(13)]
gi|408049434|gb|EKG84644.1| peptide deformylase [Vibrio Cholerae CP1044(17)]
gi|408050672|gb|EKG85819.1| peptide deformylase [Vibrio cholerae CP1050(23)]
gi|408051180|gb|EKG86291.1| peptide deformylase [Vibrio cholerae HE-16]
gi|408058579|gb|EKG93370.1| peptide deformylase [Vibrio cholerae HC-81A2]
gi|408060989|gb|EKG95587.1| peptide deformylase [Vibrio cholerae HC-51A1]
gi|408613846|gb|EKK87132.1| peptide deformylase [Vibrio cholerae CP1033(6)]
gi|408619219|gb|EKK92257.1| peptide deformylase [Vibrio cholerae CP1035(8)]
gi|408620917|gb|EKK93921.1| peptide deformylase [Vibrio cholerae HC-17A1]
gi|408623224|gb|EKK96178.1| peptide deformylase [Vibrio cholerae HC-1A2]
gi|408631070|gb|EKL03635.1| peptide deformylase [Vibrio cholerae HC-41B1]
gi|408638564|gb|EKL10458.1| peptide deformylase [Vibrio cholerae HC-55C2]
gi|408647926|gb|EKL19370.1| peptide deformylase [Vibrio cholerae HC-59A1]
gi|408650397|gb|EKL21672.1| peptide deformylase [Vibrio cholerae HC-61A2]
gi|408651600|gb|EKL22852.1| peptide deformylase [Vibrio cholerae HC-50A2]
gi|408653114|gb|EKL24291.1| peptide deformylase [Vibrio cholerae HC-62A1]
gi|408664289|gb|EKL35128.1| peptide deformylase [Vibrio cholerae HC-77A1]
gi|408664575|gb|EKL35408.1| peptide deformylase [Vibrio cholerae HE-40]
gi|408667217|gb|EKL37968.1| peptide deformylase [Vibrio cholerae HE-46]
gi|408849698|gb|EKL89711.1| peptide deformylase [Vibrio cholerae HC-02C1]
gi|408850557|gb|EKL90509.1| peptide deformylase [Vibrio cholerae HC-37A1]
gi|408854794|gb|EKL94542.1| peptide deformylase [Vibrio cholerae HC-17A2]
gi|408857503|gb|EKL97191.1| peptide deformylase [Vibrio cholerae HC-46B1]
gi|408865026|gb|EKM04439.1| peptide deformylase [Vibrio cholerae HC-59B1]
gi|408865465|gb|EKM04868.1| peptide deformylase [Vibrio cholerae HC-44C1]
gi|408870893|gb|EKM10158.1| peptide deformylase [Vibrio cholerae HC-55B2]
gi|408877867|gb|EKM16892.1| peptide deformylase [Vibrio cholerae HC-69A1]
gi|408880860|gb|EKM19778.1| peptide deformylase [Vibrio cholerae HC-62B1]
gi|439972603|gb|ELP48846.1| peptide deformylase [Vibrio cholerae 4260B]
gi|443430519|gb|ELS73088.1| peptide deformylase [Vibrio cholerae HC-64A1]
gi|443434357|gb|ELS80514.1| peptide deformylase [Vibrio cholerae HC-65A1]
gi|443438151|gb|ELS87881.1| peptide deformylase [Vibrio cholerae HC-67A1]
gi|443442260|gb|ELS95573.1| peptide deformylase [Vibrio cholerae HC-68A1]
gi|443445242|gb|ELT01964.1| peptide deformylase [Vibrio cholerae HC-71A1]
gi|443452694|gb|ELT12876.1| peptide deformylase [Vibrio cholerae HC-72A2]
gi|443456551|gb|ELT20222.1| peptide deformylase [Vibrio cholerae HC-78A1]
gi|443459714|gb|ELT27108.1| peptide deformylase [Vibrio cholerae HC-7A1]
gi|443464137|gb|ELT35085.1| peptide deformylase [Vibrio cholerae HC-80A1]
gi|443467518|gb|ELT42174.1| peptide deformylase [Vibrio cholerae HC-81A1]
gi|448263570|gb|EMB00811.1| Peptide deformylase [Vibrio cholerae O1 str. Inaba G4222]
Length = 168
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 76/131 (58%), Gaps = 9/131 (6%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ D +Y TD GIGL+APQVG ++V + R + +VL+NP+V SNK + +EG
Sbjct: 34 LLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNRDQ--PLVLINPKVVSGSNKEMG-QEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +ADVER SV ++A D G + SD A V QHE DHL G LF D
Sbjct: 91 CLSVPDYYADVERYTSVVVEALDREGKPLRIETSDFLAIVMQHEIDHLSGNLFI-----D 145
Query: 120 VLDSIREQLEI 130
L +++Q+ +
Sbjct: 146 YLSPLKQQMAM 156
>gi|401680099|ref|ZP_10812023.1| peptide deformylase [Veillonella sp. ACP1]
gi|400219226|gb|EJO50097.1| peptide deformylase [Veillonella sp. ACP1]
Length = 162
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MYKT+G+GL+APQV ++ +++V + G I L+NP + I E GC
Sbjct: 35 MADTMYKTEGVGLAAPQVNVSKRIIVVDDHAGSGL---IALINPEIIHGEGSQIGLE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS PG DVER E V + D + + + AR+FQHE DHL+G LF E+ T+
Sbjct: 91 LSVPGYFGDVERFEKVTVTGIDPHNKKVMIKAEGFLARIFQHEIDHLEGHLFIEKATN 148
>gi|325534093|pdb|3QU1|A Chain A, Peptide Deformylase From Vibrio Cholerae
gi|325534094|pdb|3QU1|B Chain B, Peptide Deformylase From Vibrio Cholerae
Length = 171
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 76/131 (58%), Gaps = 9/131 (6%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ D +Y TD GIGL+APQVG ++V + R + +VL+NP+V SNK + +EG
Sbjct: 37 LLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNRDQ--PLVLINPKVVSGSNKEMG-QEG 93
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +ADVER SV ++A D G + SD A V QHE DHL G LF D
Sbjct: 94 CLSVPDYYADVERYTSVVVEALDREGKPLRIETSDFLAIVMQHEIDHLSGNLFI-----D 148
Query: 120 VLDSIREQLEI 130
L +++Q+ +
Sbjct: 149 YLSPLKQQMAM 159
>gi|253991650|ref|YP_003043006.1| peptide deformylase [Photorhabdus asymbiotica]
gi|253783100|emb|CAQ86265.1| peptide deformylase [Photorhabdus asymbiotica]
Length = 170
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY DGIGL+A QV I+ +++V + R E +VL+NP + + + K EEGC
Sbjct: 35 MFETMYAEDGIGLAATQVDIHQRIIVIDVSDTRNE--RLVLINPELLEKNGKT-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P A V R E VKI A D NG F + L A QHE DHL G LF + ++
Sbjct: 92 LSIPEQRALVSRAEKVKIRALDYNGQSFELQADGLLAICIQHEMDHLIGKLFVDYLSPLK 151
Query: 121 LDSIREQLE 129
IR+++E
Sbjct: 152 RQRIRQKVE 160
>gi|254467295|ref|ZP_05080706.1| peptide deformylase [Rhodobacterales bacterium Y4I]
gi|206688203|gb|EDZ48685.1| peptide deformylase [Rhodobacterales bacterium Y4I]
Length = 182
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 73/129 (56%), Gaps = 6/129 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGER-GEGEEIVLVNPRVNKYSNKMIPYEEG 59
M + MY GIGL+APQ+GI +L+V + V E G+ +V+ NP + S++ YEEG
Sbjct: 44 MLETMYAAPGIGLAAPQIGILQRLIVLDCVKEEDGDPRPLVMFNPEIIASSDETNVYEEG 103
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +A+V RP+ V+++ D +G + L A QHE DHL G LF D
Sbjct: 104 CLSIPDQYAEVTRPKVVEVEWMDRSGNAQRETFDGLWATCVQHEIDHLNGKLFI-----D 158
Query: 120 VLDSIREQL 128
L ++ Q+
Sbjct: 159 YLKPLKRQM 167
>gi|115372443|ref|ZP_01459752.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
gi|310819504|ref|YP_003951862.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
gi|115370656|gb|EAU69582.1| peptide deformylase [Stigmatella aurantiaca DW4/3-1]
gi|309392576|gb|ADO70035.1| Peptide deformylase [Stigmatella aurantiaca DW4/3-1]
Length = 173
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 1/129 (0%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY DG+GL+APQVGI +++V + + + + + ++NP + Y EGC
Sbjct: 34 MFETMYAADGVGLAAPQVGILQRIIVLDTTPRQPDSKPLAMINPEIVGMEGATT-YTEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG DV+R V + D++G +++ DL A QHE DHL G +F + ++
Sbjct: 93 LSIPGEAEDVDRAAIVTVKFLDVDGQEQTLTCDDLLAIAVQHETDHLDGTVFVDHVSSLK 152
Query: 121 LDSIREQLE 129
+ IR++++
Sbjct: 153 REIIRKRMK 161
>gi|406943139|gb|EKD75206.1| peptide deformylase [uncultured bacterium]
Length = 171
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 74/117 (63%), Gaps = 3/117 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+++GIGL+A Q I+ Q++V + ++ + + + L+NP++ + S + EEGC
Sbjct: 39 MFETMYQSNGIGLAATQCDIHQQIIVIDL--QKPDSKPLHLINPKIIELSGEQ-DSEEGC 95
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LSFPG++ V+R VK+ A D + F + + L A QHE DHL G LF ER++
Sbjct: 96 LSFPGVYDMVKRAMHVKVKAIDKDNNPFELEATGLLAAAIQHEIDHLNGALFIERLS 152
>gi|308234578|ref|ZP_07665315.1| peptide deformylase [Atopobium vaginae DSM 15829]
Length = 183
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 71/115 (61%), Gaps = 8/115 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEG---EEIVLVNPRVNKYSNKMIPYE 57
MF+VMY TDG GL+APQ+G N++L+V + E GEG + VLVNP++
Sbjct: 39 MFEVMYATDGCGLAAPQIGKNIRLVVID--CEWGEGSRKKPYVLVNPKIVVADEADRSMS 96
Query: 58 EGCLSFPGIHADVERPESVKIDARDING--ARFSVSLSDLPARVFQHEFDHLQGI 110
EGCLS+PGI V+RP V +A +++G R+ + +L A QHE DHLQG+
Sbjct: 97 EGCLSYPGILVPVKRPSHVICEALNLDGDLIRYE-ARGNLLAACLQHECDHLQGV 150
>gi|153802627|ref|ZP_01957213.1| polypeptide deformylase [Vibrio cholerae MZO-3]
gi|429886437|ref|ZP_19367996.1| Peptide deformylase [Vibrio cholerae PS15]
gi|124121843|gb|EAY40586.1| polypeptide deformylase [Vibrio cholerae MZO-3]
gi|429226766|gb|EKY32846.1| Peptide deformylase [Vibrio cholerae PS15]
Length = 168
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 76/131 (58%), Gaps = 9/131 (6%)
Query: 1 MFDVMYKTD-GIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEG 59
+ D +Y TD GIGL+APQVG ++V + R + +VL+NP+V SNK + +EG
Sbjct: 34 LLDTLYATDNGIGLAAPQVGREEAIVVIDLSDNRDQ--PLVLINPKVVSGSNKEMG-QEG 90
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS P +ADVER SV ++A D G + SD A V QHE DHL G LF D
Sbjct: 91 CLSVPDYYADVERYTSVVVEALDREGKPLRIETSDFLAIVMQHEIDHLSGNLFI-----D 145
Query: 120 VLDSIREQLEI 130
L +++Q+ +
Sbjct: 146 YLSPLKQQMAM 156
>gi|418718317|ref|ZP_13277853.1| peptide deformylase [Leptospira borgpetersenii str. UI 09149]
gi|421093287|ref|ZP_15554012.1| peptide deformylase [Leptospira borgpetersenii str. 200801926]
gi|410363899|gb|EKP14927.1| peptide deformylase [Leptospira borgpetersenii str. 200801926]
gi|410744926|gb|EKQ93659.1| peptide deformylase [Leptospira borgpetersenii str. UI 09149]
gi|456890067|gb|EMG00925.1| peptide deformylase [Leptospira borgpetersenii str. 200701203]
Length = 170
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 75/141 (53%), Gaps = 12/141 (8%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPV-GERGEGE----EIVLVNPRVNKYSNKMIP 55
MFD M +G+GL+APQ+GI Q++V ER E V++NP + +
Sbjct: 30 MFDTMRHAEGVGLAAPQIGILKQIIVVGSEDNERYPNTPNVPERVILNPIITPLTKDTSG 89
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
+ EGCLS PG+ VERP +++ D G +F + A V+QHE DHL GIL+ +R
Sbjct: 90 FWEGCLSVPGMRGYVERPNKIRMQWMDEKGGQFDEIIDGYKAVVYQHECDHLSGILYVDR 149
Query: 116 MTD-------DVLDSIREQLE 129
+ D D LDS R L+
Sbjct: 150 LKDTKLFGFNDTLDSGRNVLD 170
>gi|328944367|ref|ZP_08241830.1| peptide deformylase [Atopobium vaginae DSM 15829]
gi|327491082|gb|EGF22858.1| peptide deformylase [Atopobium vaginae DSM 15829]
Length = 187
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 71/115 (61%), Gaps = 8/115 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEG---EEIVLVNPRVNKYSNKMIPYE 57
MF+VMY TDG GL+APQ+G N++L+V + E GEG + VLVNP++
Sbjct: 43 MFEVMYATDGCGLAAPQIGKNIRLVVID--CEWGEGSRKKPYVLVNPKIVVADEADRSMS 100
Query: 58 EGCLSFPGIHADVERPESVKIDARDING--ARFSVSLSDLPARVFQHEFDHLQGI 110
EGCLS+PGI V+RP V +A +++G R+ + +L A QHE DHLQG+
Sbjct: 101 EGCLSYPGILVPVKRPSHVICEALNLDGDLIRYE-ARGNLLAACLQHECDHLQGV 154
>gi|406986998|gb|EKE07463.1| hypothetical protein ACD_18C00081G0006 [uncultured bacterium]
Length = 165
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 6/123 (4%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEG------EEIVLVNPRVNKYSNKMI 54
M MY+ DGIGL+APQVG N+++ V + + E++VL+NP K + K
Sbjct: 37 MIKTMYEDDGIGLAAPQVGKNIRVCVIGKDALKQDKNNTLAIEDLVLINPTWQKINKKTQ 96
Query: 55 PYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFE 114
EGCLS P + V+R ++V ++A D +G + ++ ARV QHE DHL G+LF +
Sbjct: 97 VDLEGCLSVPKTYGKVKRYKNVYVEALDRHGEKMEFEANNFFARVVQHEVDHLNGVLFID 156
Query: 115 RMT 117
+ +
Sbjct: 157 KAS 159
>gi|114566758|ref|YP_753912.1| peptide deformylase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|122318216|sp|Q0AXL3.1|DEF_SYNWW RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|114337693|gb|ABI68541.1| peptide deformylase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 152
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 72/125 (57%), Gaps = 8/125 (6%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIV-LVNPRVNKYSNKMIPYEEG 59
M D MY DG+GL+APQ+GI +++V + GE ++ L+NP + K + EG
Sbjct: 35 MRDTMYAADGVGLAAPQIGIPKRMIVVDI------GENLLELINPEILKQEGNQLG-SEG 87
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDD 119
CLS PGI V R + V + D NG + + DL A+V QHE DHL+GILF ++ +
Sbjct: 88 CLSVPGIVGRVNRAKKVLVKGLDRNGQELNFAAVDLLAKVLQHEIDHLEGILFIDKAIET 147
Query: 120 VLDSI 124
++ +
Sbjct: 148 RIEKL 152
>gi|333029959|ref|ZP_08458020.1| Peptide deformylase [Bacteroides coprosuis DSM 18011]
gi|332740556|gb|EGJ71038.1| Peptide deformylase [Bacteroides coprosuis DSM 18011]
Length = 186
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 76/133 (57%), Gaps = 5/133 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV--FNPVGE---RGEGEEIVLVNPRVNKYSNKMIP 55
MF+ M DGIGL+APQ+G++++L+V + + E +G V +NP + + I
Sbjct: 34 MFETMEHADGIGLAAPQIGLSIRLVVMDLDVLSEDFPELKGFRKVFINPYIEEVDGDDIT 93
Query: 56 YEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
EGCLS PGI DV RP+ V + +D N + + + ARV QHEFDHL GI+F +
Sbjct: 94 MGEGCLSLPGIGEDVTRPDVVYVTYQDENFEKHTEKVEGYLARVMQHEFDHLDGIMFIDH 153
Query: 116 MTDDVLDSIREQL 128
++ IR +L
Sbjct: 154 ISPLRKQMIRSKL 166
>gi|304404142|ref|ZP_07385804.1| peptide deformylase [Paenibacillus curdlanolyticus YK9]
gi|304347120|gb|EFM12952.1| peptide deformylase [Paenibacillus curdlanolyticus YK9]
Length = 165
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 76/127 (59%), Gaps = 4/127 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MY +G+GL+APQ+GI+ +++V + +GE G I +VNP + + EGC
Sbjct: 35 MADTMYDAEGVGLAAPQIGISKRVIVVD-IGEEESGL-IEVVNPVIVLSEGEQF-GPEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS P ++ DV R + VK+ +D NG V S AR FQHE DHL GILF + + ++V
Sbjct: 92 LSIPNLNGDVSRADRVKVAGQDRNGNPIEVDASGFLARAFQHEIDHLNGILFTD-LAENV 150
Query: 121 LDSIREQ 127
D ++Q
Sbjct: 151 YDITQQQ 157
>gi|303232127|ref|ZP_07318830.1| peptide deformylase [Veillonella atypica ACS-049-V-Sch6]
gi|429759367|ref|ZP_19291866.1| peptide deformylase [Veillonella atypica KON]
gi|302513233|gb|EFL55272.1| peptide deformylase [Veillonella atypica ACS-049-V-Sch6]
gi|429179643|gb|EKY20882.1| peptide deformylase [Veillonella atypica KON]
Length = 162
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M D MYKT+G+GL+APQV ++ +++V + G I L+NP + I E GC
Sbjct: 35 MADTMYKTEGVGLAAPQVNVSKRIIVVDDHAGSGL---IALINPEIIHGEGSQIGLE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTD 118
LS PG DVER E V + D + + + AR+FQHE DHL+G LF E+ T+
Sbjct: 91 LSVPGYFGDVERFEKVTVKGIDPHNKKVMIKAEGFLARIFQHEIDHLEGHLFIEKATN 148
>gi|228922621|ref|ZP_04085921.1| Peptide deformylase [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|423582077|ref|ZP_17558188.1| peptide deformylase 1 [Bacillus cereus VD014]
gi|423635362|ref|ZP_17611015.1| peptide deformylase 1 [Bacillus cereus VD156]
gi|228837050|gb|EEM82391.1| Peptide deformylase [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|401212956|gb|EJR19697.1| peptide deformylase 1 [Bacillus cereus VD014]
gi|401278113|gb|EJR84049.1| peptide deformylase 1 [Bacillus cereus VD156]
Length = 156
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 73/118 (61%), Gaps = 6/118 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRV-NKYSNKMIPYEEG 59
M + M DG+GL+APQVG+++Q+ + + + G+ I L+NP + K ++ P EG
Sbjct: 35 MHETMLIADGVGLAAPQVGVSLQVAIVDVDDDTGK---IELINPSILEKRGEQVGP--EG 89
Query: 60 CLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
CLSFPG++ +VER + +K+ A++ G F + AR QHE DHL G+LF ++T
Sbjct: 90 CLSFPGLYGEVERADYIKVRAQNRRGKVFLLEAEGFLARAIQHEIDHLHGVLFTSKVT 147
>gi|329913547|ref|ZP_08275972.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
gi|327545311|gb|EGF30553.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480]
Length = 177
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M + MY G+GL++ QV ++ QL++ + + E VL+NP + S +M Y+EGC
Sbjct: 35 MAETMYDAPGVGLASSQVDVHEQLIIVDISDNQSELR--VLINPEITWASTEMQLYDEGC 92
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LS PG++ VER +K+ A D++G F + L A QHE DHL+G +F E ++
Sbjct: 93 LSVPGVYDGVERHARIKVRALDVDGKEFDTTADGLLAVCIQHEMDHLKGKVFVEYLS 149
>gi|146329347|ref|YP_001209086.1| formylmethionine deformylase [Dichelobacter nodosus VCS1703A]
gi|158513298|sp|A5EWL8.1|DEF_DICNV RecName: Full=Peptide deformylase; Short=PDF; AltName:
Full=Polypeptide deformylase
gi|146232817|gb|ABQ13795.1| formylmethionine deformylase [Dichelobacter nodosus VCS1703A]
Length = 181
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 72/126 (57%), Gaps = 9/126 (7%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFN------PVGERGE---GEEIVLVNPRVNKYSN 51
M++ MY GIGL+APQV I +L+V + GE+ E +++VLVNP + + S
Sbjct: 35 MYETMYHFHGIGLAAPQVNIQQRLIVMDVPQRSAEEGEKAEQIPSDKLVLVNPEIVQRSE 94
Query: 52 KMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGIL 111
+ YEEGCLS P +A V RP ++ + +DI GA + L + QHE DHL G L
Sbjct: 95 ECQDYEEGCLSLPNQYALVTRPANITVRYQDITGATQERAAQGLLSVCIQHEIDHLNGGL 154
Query: 112 FFERMT 117
F + ++
Sbjct: 155 FIDHLS 160
>gi|386311816|ref|YP_006007981.1| peptide deformylase [Shewanella putrefaciens 200]
gi|319424441|gb|ADV52515.1| peptide deformylase [Shewanella putrefaciens 200]
Length = 170
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 74/129 (57%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY+ GIGL+A QV + QL+V + E + V +NP + S EEGC
Sbjct: 35 MFETMYQEKGIGLAATQVDYHKQLIVMDLQDEVERPK--VFINPEIISSSGDFCN-EEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PGI+A V+R E V + A D NG F V ++L A QHE DHL+G LF + ++
Sbjct: 92 LSVPGIYAKVDRAEFVTVKALDRNGCEFIVEANELFAICIQHEMDHLKGKLFVDYLSPLK 151
Query: 121 LDSIREQLE 129
I+++LE
Sbjct: 152 RQRIKQKLE 160
>gi|330831510|ref|YP_004394462.1| peptide deformylase 1 [Aeromonas veronii B565]
gi|423211839|ref|ZP_17198372.1| peptide deformylase [Aeromonas veronii AER397]
gi|328806646|gb|AEB51845.1| Peptide deformylase 1 [Aeromonas veronii B565]
gi|404612640|gb|EKB09698.1| peptide deformylase [Aeromonas veronii AER397]
Length = 170
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
MF+ MY +GIGL+A QV I+ +++V + V E E + +VL+NP V + EEGC
Sbjct: 35 MFETMYAEEGIGLAATQVDIHQRIIVID-VSENRE-DPLVLINPEVIEQCGST-GIEEGC 91
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120
LS PG A V R E +KI A D NG F + DL A QHE DHL G LF + ++
Sbjct: 92 LSVPGSRALVPRAEQIKIRALDRNGKPFELEADDLLAICIQHEMDHLVGKLFVDYLSPLK 151
Query: 121 LDSIREQLE 129
IR++LE
Sbjct: 152 RQRIRQKLE 160
>gi|319951883|ref|YP_004163150.1| peptide deformylase [Cellulophaga algicola DSM 14237]
gi|319420543|gb|ADV47652.1| peptide deformylase [Cellulophaga algicola DSM 14237]
Length = 196
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 75/129 (58%), Gaps = 12/129 (9%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV-----------FNPVGERG-EGEEIVLVNPRVNK 48
M++ MY G+GL+APQ+G+ ++L V +P ++ +G + V VN ++ +
Sbjct: 34 MWETMYNASGVGLAAPQIGLPIRLFVIDTTPFSEDEDLSPEDQKALDGFKKVFVNAKIEE 93
Query: 49 YSNKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQ 108
+ + + EGCLS P + DV R E++KI D N S S L ARV QHE+DH++
Sbjct: 94 ETGEEWNFNEGCLSIPDVREDVNRKETIKITYLDENFNEKSESYGGLLARVIQHEYDHIE 153
Query: 109 GILFFERMT 117
GILF ++++
Sbjct: 154 GILFTDKLS 162
>gi|428279167|ref|YP_005560902.1| peptide deformylase [Bacillus subtilis subsp. natto BEST195]
gi|291484124|dbj|BAI85199.1| peptide deformylase [Bacillus subtilis subsp. natto BEST195]
Length = 160
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGC 60
M+D M + DG+GL+APQ+GI + V + +RG I LVNP + + S + E GC
Sbjct: 35 MYDTMLEMDGVGLAAPQIGILKRAAVVDIGDDRGR---IDLVNPEILERSGEQTGIE-GC 90
Query: 61 LSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMT 117
LSFPG++ DV+R + VK+ A + G F + AR QHE DHL G+LF +++
Sbjct: 91 LSFPGVYGDVKRADYVKVRAFNRQGKPFILEARGFLARAVQHEMDHLDGVLFTSKIS 147
>gi|406900092|gb|EKD43172.1| Peptide deformylase [uncultured bacterium]
Length = 166
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 70/119 (58%), Gaps = 7/119 (5%)
Query: 1 MFDVMYKTDGIGLSAPQVGINVQLMV----FNPVGERGEGEEIVLVNPRVNKYSNKMIPY 56
M + MY DG+G++APQVG ++QL V F+P+ + E+++LVNP K S
Sbjct: 37 MTETMYVKDGVGIAAPQVGESLQLCVIAKKFSPLNK---NEDLILVNPVWKKTSILKAWD 93
Query: 57 EEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFER 115
EGCLS P ++ +V+R ++ + A + G + D PAR+ QHE DHL G LF E+
Sbjct: 94 IEGCLSVPLVYGEVKRYTNIVVQALNQFGEKIEFKAKDFPARIVQHEVDHLNGTLFIEK 152
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.141 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,101,687,956
Number of Sequences: 23463169
Number of extensions: 83715946
Number of successful extensions: 162988
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5262
Number of HSP's successfully gapped in prelim test: 420
Number of HSP's that attempted gapping in prelim test: 152617
Number of HSP's gapped (non-prelim): 5729
length of query: 130
length of database: 8,064,228,071
effective HSP length: 96
effective length of query: 34
effective length of database: 10,106,731,143
effective search space: 343628858862
effective search space used: 343628858862
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)