Query 032961
Match_columns 130
No_of_seqs 103 out of 1091
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 13:01:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032961.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032961hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u04_A Peptide deformylase 1; 100.0 9.5E-56 3.3E-60 337.5 12.0 129 1-129 37-182 (190)
2 3pn3_A Peptide deformylase 1B, 100.0 9.2E-56 3.2E-60 338.1 10.8 129 1-129 32-160 (193)
3 1xeo_A Peptide deformylase; co 100.0 2.2E-55 7.5E-60 330.0 11.6 126 1-129 34-159 (168)
4 1n5n_A Peptide deformylase; me 100.0 3.9E-55 1.3E-59 331.7 11.9 127 1-129 47-173 (180)
5 1rl4_A Formylmethionine deform 100.0 3.2E-55 1.1E-59 334.1 10.6 129 1-129 40-169 (188)
6 3qu1_A Peptide deformylase 2; 100.0 4.9E-55 1.7E-59 328.9 10.8 126 1-129 37-163 (171)
7 3uwb_A RIIA-RIIB membrane-asso 100.0 3.4E-55 1.2E-59 325.0 9.1 120 1-120 34-153 (154)
8 2ew5_A Peptide deformylase; in 100.0 6.5E-55 2.2E-59 330.8 10.8 128 1-129 34-164 (181)
9 2w3t_A Peptide deformylase; pr 100.0 1.3E-54 4.6E-59 330.6 11.6 126 1-129 34-159 (188)
10 1lme_A PDF, peptide deformylas 100.0 6.8E-55 2.3E-59 329.3 9.5 124 1-129 45-168 (176)
11 4dr9_A Peptide deformylase; hy 100.0 7.9E-55 2.7E-59 332.9 9.6 129 1-129 50-178 (192)
12 3e3u_A Peptide deformylase; me 100.0 2.9E-54 9.9E-59 330.9 12.5 129 1-129 40-175 (197)
13 1v3y_A Peptide deformylase; pr 100.0 2.9E-54 9.8E-59 329.9 11.4 127 1-128 33-171 (192)
14 1y6h_A Peptide deformylase; op 100.0 3.2E-55 1.1E-59 331.5 5.8 128 1-128 37-169 (177)
15 3dld_A Peptide deformylase; ba 100.0 4E-55 1.4E-59 329.4 5.8 126 1-126 35-165 (171)
16 1ws0_A Peptide deformylase 1; 100.0 7.7E-55 2.6E-59 323.7 5.7 121 1-125 35-155 (156)
17 3g5k_A Peptide deformylase, mi 100.0 1.8E-53 6.1E-58 323.3 7.6 121 1-121 39-173 (183)
18 1zxz_A PDF, peptide deformylas 100.0 1.5E-52 5.2E-57 321.4 8.5 121 1-121 38-172 (197)
19 2okl_A Peptide deformylase 2; 100.0 8.4E-52 2.9E-56 314.6 9.3 121 1-121 38-173 (185)
20 2os0_A Peptide deformylase; PD 100.0 2.2E-51 7.6E-56 312.9 9.4 121 1-121 37-176 (188)
21 1lm4_A Peptide deformylase PDF 100.0 1.9E-51 6.5E-56 314.7 8.8 121 1-121 48-184 (194)
22 3svj_P Peptide deformylase 3; 100.0 3.7E-51 1.3E-55 315.0 7.5 121 1-121 49-192 (203)
23 3l87_A Peptide deformylase; hy 100.0 3.2E-50 1.1E-54 315.6 7.7 121 1-121 83-227 (238)
24 2kvz_A ISPE; structural genomi 37.3 27 0.00094 22.5 2.9 26 71-96 4-31 (85)
25 2bkf_A Zinc-finger protein NBR 33.0 40 0.0014 22.0 3.1 21 74-94 44-64 (87)
26 3uip_D E3 SUMO-protein ligase 28.3 21 0.00072 22.3 1.1 17 99-115 48-64 (67)
27 3npp_A PFAM DUF1093 family pro 26.0 66 0.0023 20.4 3.3 21 74-94 28-48 (87)
28 2k5q_A Hypothetical membrane a 24.9 66 0.0023 21.3 3.2 20 75-94 36-55 (105)
29 2kt7_A Putative peptidoglycan 23.1 59 0.002 21.6 2.7 22 73-94 5-28 (102)
30 2b9s_A Topoisomerase I-like pr 22.7 1.3E+02 0.0044 25.1 5.2 72 57-128 302-376 (432)
31 3qii_A PHD finger protein 20; 22.2 43 0.0015 21.7 1.8 44 51-96 26-69 (85)
32 1d9n_A Methyl-CPG-binding prot 21.2 79 0.0027 19.8 2.9 36 54-89 2-44 (75)
33 1sgo_A HSPC210, protein C14ORF 21.2 41 0.0014 23.8 1.6 50 77-128 65-126 (139)
34 3u12_A USP37 protein; structur 21.1 46 0.0016 23.6 1.9 60 68-127 44-114 (141)
35 3lqb_A Hatching enzyme, LOC792 20.9 54 0.0019 24.1 2.4 27 86-112 80-109 (199)
36 2k5w_A Hypothetical cytosolic 20.9 87 0.003 21.3 3.2 23 74-96 33-55 (117)
37 2qcq_A Bone morphogenetic prot 20.7 1.5E+02 0.0052 19.4 4.4 34 64-97 71-104 (110)
No 1
>3u04_A Peptide deformylase 1; ssgcid, actinonin, ehrlichia chaffeensi structural genomics; HET: BB2; 1.70A {Ehrlichia chaffeensis} SCOP: d.167.1.0 PDB: 3oca_A
Probab=100.00 E-value=9.5e-56 Score=337.55 Aligned_cols=129 Identities=32% Similarity=0.564 Sum_probs=119.5
Q ss_pred ChHhhhcCCCeEEeccccCccceEEEEecCCCCC-----------------CceeEEEEcceEEeeCCcEeeCeeecccc
Q 032961 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-----------------EGEEIVLVNPRVNKYSNKMIPYEEGCLSF 63 (130)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~-----------------~~~~~v~iNP~I~~~s~~~~~~~EgClS~ 63 (130)
|++|||+++||||||||||+++|+||++...... ...+.+||||+|++.|++....+|||||+
T Consensus 37 M~eTM~~~~GvGLAApQIGv~~Ri~vid~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSv 116 (190)
T 3u04_A 37 MFETMHANQGLGLAAVQVGVHKRILVMNVPEEFEDSEDIENVEDKIEGYELYGGPYCIINPKIVDISQEKVKLKEGCLSV 116 (190)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEEECCC-------------CTTCBSSEEEEEEEEEEEEEECSCEEEEEECCTTS
T ss_pred HHHHHHHcCCeEEehhhcCCceeEEEEEcCccccccccccccccccccccccCCCEEEECCEEEecCCCEeeccCCCCCc
Confidence 8999999999999999999999999999764211 23578999999999999988889999999
Q ss_pred CCCeeeecCCCceEEEEEcCCCCEEEEEEeccceehHhhhhhhhCCceeeecCCHHHHHHHHHHhc
Q 032961 64 PGIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLE 129 (130)
Q Consensus 64 pg~~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~ 129 (130)
||+++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+||+||+++.+|.+++++++
T Consensus 117 Pg~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~ 182 (190)
T 3u04_A 117 PGYFDYIVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVFLKYLSKFKRDFAIEKVK 182 (190)
T ss_dssp TTCCEEEEEESCEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGSCHHHHHHHHHHHH
T ss_pred CCcceeeccchheEEEEECCCCCEEEEEEEChhhhhhhhHHHhcCCEeeeeecCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988764
No 2
>3pn3_A Peptide deformylase 1B, chloroplastic; PDF, N-terminal excision pathway, N induced-FIT, hydrolase-hydrolase inhibitor complex; HET: PN3; 1.30A {Arabidopsis thaliana} PDB: 3m6p_A* 3o3j_A* 3pn2_A 3m6o_A* 3pn4_A* 3pn5_A 3m6q_A 3pn6_A 3m6r_A 3cpm_A
Probab=100.00 E-value=9.2e-56 Score=338.08 Aligned_cols=129 Identities=79% Similarity=1.335 Sum_probs=121.0
Q ss_pred ChHhhhcCCCeEEeccccCccceEEEEecCCCCCCceeEEEEcceEEeeCCcEeeCeeeccccCCCeeeecCCCceEEEE
Q 032961 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (130)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~pg~~~~V~R~~~I~v~~ 80 (130)
|++|||+++||||||||||+++|+||++..+......+.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|
T Consensus 32 M~eTM~~a~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~ 111 (193)
T 3pn3_A 32 MFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDA 111 (193)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEECTTCSTTSSCCEEEEEEEEEEECSCEEEEEECCTTSTTCCEEEEEESCEEEEE
T ss_pred HHHHHHHCCCeEEEccccCcceEEEEEECCCCcCCcccEEEECCEEEecCCcEEEeecccccCCCCCCcCcCCCEEEEEE
Confidence 89999999999999999999999999998654334457899999999999998889999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccceehHhhhhhhhCCceeeecCCHHHHHHHHHHhc
Q 032961 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLE 129 (130)
Q Consensus 81 ~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~ 129 (130)
+|++|++++++++||+|||+|||+|||+|+||+||+++.+|.+++++++
T Consensus 112 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~kr~~~~~k~~ 160 (193)
T 3pn3_A 112 RDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELE 160 (193)
T ss_dssp ECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGSCHHHHHTTHHHHH
T ss_pred EcCCCCEEEEEEEChhhhhhhHHHHHhCCEeeeeecCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888764
No 3
>1xeo_A Peptide deformylase; cobalt deformylase, formate, hydrolase; 1.30A {Escherichia coli} SCOP: d.167.1.1 PDB: 1bs5_A 1bs6_A 1bs7_A 1bs8_A 1bsj_A* 1bsk_A* 1bsz_A* 1g27_A* 1bs4_A* 1icj_A* 1lru_A* 1xem_A 1xen_A 1g2a_A 2ai8_A* 4al3_A 4al2_A 3k6l_A* 1dff_A 1def_A ...
Probab=100.00 E-value=2.2e-55 Score=330.03 Aligned_cols=126 Identities=40% Similarity=0.631 Sum_probs=117.5
Q ss_pred ChHhhhcCCCeEEeccccCccceEEEEecCCCCCCceeEEEEcceEEeeCCcEeeCeeeccccCCCeeeecCCCceEEEE
Q 032961 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (130)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~pg~~~~V~R~~~I~v~~ 80 (130)
|++|||+++|+||||||||+++|+||++..++ ...+.+||||+|++.|++.. .+|||||+||+++.|+||.+|+|+|
T Consensus 34 M~~Tm~~~~GvGLAApQIGv~~ri~vid~~~~--~~~~~vlINP~I~~~s~~~~-~~EGCLSvPg~~~~V~R~~~I~v~~ 110 (168)
T 1xeo_A 34 MFETMYAEEGIGLAATQVDIHQRIIVIDVSEN--RDERLVLINPELLEKSGETG-IEEGCLSIPEQRALVPRAEKVKIRA 110 (168)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEECCCTT--SCCCEEEEEEEEEEEECCBC-CEECCTTSTTCCEECCBCSEEEEEE
T ss_pred HHHHHHHCCCEEEEhHhCCcceEEEEEEccCC--cCccEEEECCEEeccCCCEE-EecCccCcCCEEEEeEcccEEEEEE
Confidence 89999999999999999999999999997542 22578999999999998876 8999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccceehHhhhhhhhCCceeeecCCHHHHHHHHHHhc
Q 032961 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLE 129 (130)
Q Consensus 81 ~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~ 129 (130)
+|++|++++.+++||+|||+|||+|||+|+||+||+++..|.++.++++
T Consensus 111 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~~~~~~~~~ 159 (168)
T 1xeo_A 111 LDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVE 159 (168)
T ss_dssp ECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGSCHHHHHHHHHHHH
T ss_pred ECCCCCEEEEEEeCCeEEeeeehhHHhCCEEEeeeCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998877653
No 4
>1n5n_A Peptide deformylase; metalloenzyme, drug design, deformylation, hydrolase; 1.80A {Pseudomonas aeruginosa} SCOP: d.167.1.1 PDB: 1s17_A* 1ix1_A* 1lry_A*
Probab=100.00 E-value=3.9e-55 Score=331.65 Aligned_cols=127 Identities=39% Similarity=0.691 Sum_probs=118.7
Q ss_pred ChHhhhcCCCeEEeccccCccceEEEEecCCCCCCceeEEEEcceEEeeCCcEeeCeeeccccCCCeeeecCCCceEEEE
Q 032961 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (130)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~pg~~~~V~R~~~I~v~~ 80 (130)
|++|||+++||||||||||+++|+||++..++ ...+.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|
T Consensus 47 M~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~--~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~ 124 (180)
T 1n5n_A 47 MFETMYEAPGIGLAATQVNVHKRIVVMDLSED--KSEPRVFINPEFEPLTEEMDQYQEGCLSVPGFYENVDRPQKVRIKA 124 (180)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEECSTT--SCCEEEEEEEEEEESCSCEEEEEECCTTSTTCCEEEEEESCEEEEE
T ss_pred HHHHHHHCCCeEEEhhhcCcceEEEEEEccCC--CCccEEEECCEEecCCCCEEecccCCcCcCCcceEEeccCEEEEEE
Confidence 79999999999999999999999999997542 2357899999999999997778999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccceehHhhhhhhhCCceeeecCCHHHHHHHHHHhc
Q 032961 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLE 129 (130)
Q Consensus 81 ~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~ 129 (130)
+|++|++++++++||+|||||||+|||+|+||+||+++..|.+++++++
T Consensus 125 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~ 173 (180)
T 1n5n_A 125 LDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLE 173 (180)
T ss_dssp ECTTSCEEEEEECHHHHHHHHHHHHHHBTCCGGGGSCHHHHHHHHHHHH
T ss_pred ECCCCCEEEEEEcCCeEEeeeehhHhhCCEeEeeecCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998877753
No 5
>1rl4_A Formylmethionine deformylase; crystal engineering, drug design, malaria, PDF, peptide DEFO plasmodium, hydrolase; HET: BRR BL5; 2.18A {Plasmodium falciparum} SCOP: d.167.1.1 PDB: 1rqc_A 1jym_A
Probab=100.00 E-value=3.2e-55 Score=334.14 Aligned_cols=129 Identities=46% Similarity=0.781 Sum_probs=114.8
Q ss_pred ChHhhhcCCCeEEeccccCccceEEEEecCC-CCCCceeEEEEcceEEeeCCcEeeCeeeccccCCCeeeecCCCceEEE
Q 032961 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVG-ERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKID 79 (130)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~-~~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~pg~~~~V~R~~~I~v~ 79 (130)
|++|||+++||||||||||+++|+||++... ......+.+||||+|++.|++....+|||||+||+++.|+||.+|+|+
T Consensus 40 M~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~ 119 (188)
T 1rl4_A 40 MFDIMYESKGIGLSAPQVNISKRIIVWNALYEKRKEENERIFINPSIVEQSLVKLKLIEGCLSFPGIEGKVERPSIVSIS 119 (188)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEC-----------CEEEEEEEEEECSCEEEEEECCTTSTTCCEEEEEESCEEEE
T ss_pred HHHHHHHCCCeEEEhhhcCcceEEEEEEccccccCcccceEEECCEEEecCCcEEeccccccccCCccEEEecccEEEEE
Confidence 7999999999999999999999999999742 112234689999999999999877899999999999999999999999
Q ss_pred EEcCCCCEEEEEEeccceehHhhhhhhhCCceeeecCCHHHHHHHHHHhc
Q 032961 80 ARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLE 129 (130)
Q Consensus 80 ~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~ 129 (130)
|+|++|++++++++||+|||||||+|||+|+||+||+++..|.++.++++
T Consensus 120 ~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~ 169 (188)
T 1rl4_A 120 YYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRPKLN 169 (188)
T ss_dssp EECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGBCHHHHHHHHHHHH
T ss_pred EECCCCCEEEEEEeCCeEEEeEehhHhhCCEEEEeecCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877753
No 6
>3qu1_A Peptide deformylase 2; structural genomics, center for structural genomics of infec diseases, csgid, metal binding; 1.80A {Vibrio cholerae} SCOP: d.167.1.0
Probab=100.00 E-value=4.9e-55 Score=328.94 Aligned_cols=126 Identities=37% Similarity=0.587 Sum_probs=117.6
Q ss_pred ChHhhhc-CCCeEEeccccCccceEEEEecCCCCCCceeEEEEcceEEeeCCcEeeCeeeccccCCCeeeecCCCceEEE
Q 032961 1 MFDVMYK-TDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKID 79 (130)
Q Consensus 1 m~~tm~~-~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~pg~~~~V~R~~~I~v~ 79 (130)
|++|||+ ++|+||||||||+++|+||++..++ +..+.+||||+|++ |++....+|||||+||+++.|+||.+|+|+
T Consensus 37 M~eTm~~~~~GvGLAApQIGv~~ri~vid~~~~--~~~~~vlINP~I~~-~~~~~~~~EGCLSvPg~~~~V~R~~~I~V~ 113 (171)
T 3qu1_A 37 LLDTLYATDNGIGLAAPQVGREEAIVVIDLSDN--RDQPLVLINPKVVS-GSNKEMGQEGCLSVPDYYADVERYTSVVVE 113 (171)
T ss_dssp HHHHHHHSSSCCEEEGGGGTCCBCEEEECCCSS--SCCCEEEEEEEEEE-EEEEEEEEECCTTSTTCCEEEEEEEEEEEE
T ss_pred HHHHHHhcCCcEEEEccccCcceEEEEEEccCC--CCccEEEECCEEEe-CCCeEEcccCccCcCCccccccCchhhEEE
Confidence 7999999 9999999999999999999997643 23578999999997 777778899999999999999999999999
Q ss_pred EEcCCCCEEEEEEeccceehHhhhhhhhCCceeeecCCHHHHHHHHHHhc
Q 032961 80 ARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLE 129 (130)
Q Consensus 80 ~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~ 129 (130)
|+|++|++++.+++||+|||+|||+|||+|+||+||+++.+|.+++++++
T Consensus 114 ~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~ 163 (171)
T 3qu1_A 114 ALDREGKPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQMAMKKVK 163 (171)
T ss_dssp EECTTSCEEEEEECSTHHHHHHHHHHHHTTCCGGGGSCHHHHHHHHHHHH
T ss_pred EECCCCCEEEEEEECHHHHHHhHHHHhhCCEehhhhCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988764
No 7
>3uwb_A RIIA-RIIB membrane-associated protein; actinonin, probable peptide deformylase hydrolase-antibiotic complex; HET: BB2; 1.70A {Synechococcus phage s-ssm7} PDB: 3uwa_A*
Probab=100.00 E-value=3.4e-55 Score=325.01 Aligned_cols=120 Identities=40% Similarity=0.695 Sum_probs=109.9
Q ss_pred ChHhhhcCCCeEEeccccCccceEEEEecCCCCCCceeEEEEcceEEeeCCcEeeCeeeccccCCCeeeecCCCceEEEE
Q 032961 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (130)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~pg~~~~V~R~~~I~v~~ 80 (130)
|++|||+++|+||||||||+++|+||++...+.....+.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|
T Consensus 34 M~~Tm~~~~GvGLAApQIGv~~ri~vi~~~~~~~~~~~~v~INP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~v~~ 113 (154)
T 3uwb_A 34 MCEAMWASDGIGLAAPQVGINKRVIVVDETTEEHGKYAHLMVNPKITWKSEEKVLFDEGCLSVPDQNGEVLRPKSIKVTF 113 (154)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEECCBTTTBSCEEEEEEEEEEEECSCEEEEEEEETTEEEEEEEEEEESCEEEEE
T ss_pred HHHHHHHCCCcEEEccccCccEEEEEEEccccccCcccEEEECCEEEECCCcEEecccCccCcCCcceeccCcceeEEEE
Confidence 89999999999999999999999999998643222367899999999999998878999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccceehHhhhhhhhCCceeeecCCHHH
Q 032961 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDV 120 (130)
Q Consensus 81 ~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~ 120 (130)
+|++|++++.+++||+|||+|||+|||+|+||+||+++++
T Consensus 114 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~e 153 (154)
T 3uwb_A 114 QNKDGKYKKWKLDGLAARVVQHEIDHLEGILFVDYFNDKE 153 (154)
T ss_dssp ECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGCC---
T ss_pred ECCCCCEEEEEEEChhhhhhhhHHHhhCCEeeeEEeCCcC
Confidence 9999999999999999999999999999999999999864
No 8
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A {Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Probab=100.00 E-value=6.5e-55 Score=330.77 Aligned_cols=128 Identities=34% Similarity=0.587 Sum_probs=117.1
Q ss_pred ChHhhhcCCCeEEeccccCccceEEEEecCCCC--CCcee-EEEEcceEEeeCCcEeeCeeeccccCCCeeeecCCCceE
Q 032961 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGER--GEGEE-IVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVK 77 (130)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~--~~~~~-~v~iNP~I~~~s~~~~~~~EgClS~pg~~~~V~R~~~I~ 77 (130)
|++|||+++||||||||||+++|+||++..+.. ....+ .+||||+|+ .|+++...+|||||+||+++.|+||.+|+
T Consensus 34 M~eTm~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~~~~vlINP~I~-~s~~~~~~~EGCLSvPg~~~~V~R~~~I~ 112 (181)
T 2ew5_A 34 MYETMIASEGIGLAAIQVGLPLRMLIINLPQEDGVQHKEDCLEIINPKFI-ETGGSMMYKEGCLSVPGFYEEVERFEKVK 112 (181)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEECCCCTTSCCCGGGCEEEEEEEEE-EEECCEEEEECCTTSTTCCEEEEECSEEE
T ss_pred HHHHHHHCCCeEEEhhhcCcceEEEEEECCCcccccccCccEEEECCEEE-EcCCEEEcccCCcccCCCcceeccccEEE
Confidence 899999999999999999999999999975421 22345 899999999 88886678999999999999999999999
Q ss_pred EEEEcCCCCEEEEEEeccceehHhhhhhhhCCceeeecCCHHHHHHHHHHhc
Q 032961 78 IDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLE 129 (130)
Q Consensus 78 v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~ 129 (130)
|+|+|++|++++++++||+|||+|||+|||+|+||+||+++..|.++.++++
T Consensus 113 V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~ 164 (181)
T 2ew5_A 113 IEYQNRFAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKELK 164 (181)
T ss_dssp EEEECTTCCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGCCHHHHHHHHHHHH
T ss_pred EEEECCCCCEEEEEEeCceEEeeeehhHHhCCEeEeeeCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998877653
No 9
>2w3t_A Peptide deformylase; protein biosynthesis, iron, nickel, hydrolase, metal-binding; 1.69A {Escherichia coli} PDB: 2w3u_A
Probab=100.00 E-value=1.3e-54 Score=330.61 Aligned_cols=126 Identities=40% Similarity=0.631 Sum_probs=117.5
Q ss_pred ChHhhhcCCCeEEeccccCccceEEEEecCCCCCCceeEEEEcceEEeeCCcEeeCeeeccccCCCeeeecCCCceEEEE
Q 032961 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (130)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~pg~~~~V~R~~~I~v~~ 80 (130)
|++|||+++||||||||||+++|+||++..++ ...+.+||||+|++.|++.. .+|||||+||+++.|+||.+|+|+|
T Consensus 34 M~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~--~~~~~vlINP~I~~~s~~~~-~~EGCLSvPg~~~~V~R~~~I~V~~ 110 (188)
T 2w3t_A 34 MFETMYAEEGIGLAATQVDIHQRIIVIDVSEN--RDERLVLINPELLEKSGETG-IEEGCLSIPEQRALVPRAEKVKIRA 110 (188)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEECCCTT--SCCCEEEEEEEEEEEESCEE-EEECCTTSTTCCEEEEECSEEEEEE
T ss_pred HHHHHHhCCCEEEEhHHcCcceEEEEEEccCC--cCceEEEECCEEEecCCCEE-eecCccCcCCEEEEEEcccEEEEEE
Confidence 89999999999999999999999999997542 23568999999999999876 8999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccceehHhhhhhhhCCceeeecCCHHHHHHHHHHhc
Q 032961 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLE 129 (130)
Q Consensus 81 ~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~ 129 (130)
+|++|++++++++||+|||+|||+|||+|+||+||+++..|.+++++++
T Consensus 111 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~ 159 (188)
T 2w3t_A 111 LDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVE 159 (188)
T ss_dssp ECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGSCHHHHHHHHHHHH
T ss_pred ECCCCCEEEEEEECCeEEeeeehHHHhCCEeEeeecCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998877653
No 10
>1lme_A PDF, peptide deformylase; thermophIle, metalloenzyme, deformylation, structural genomics, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: d.167.1.1
Probab=100.00 E-value=6.8e-55 Score=329.30 Aligned_cols=124 Identities=37% Similarity=0.688 Sum_probs=108.6
Q ss_pred ChHhhhcCCCeEEeccccCccceEEEEecCCCCCCceeEEEEcceEEeeCCcEeeCeeeccccCCCeeeecCCCceEEEE
Q 032961 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (130)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~pg~~~~V~R~~~I~v~~ 80 (130)
|++|||+++||||||||||+++|+||++..+ .+.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|
T Consensus 45 M~eTM~~~~GvGLAApQIGv~~Ri~vid~~~-----~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~ 119 (176)
T 1lme_A 45 MIETMYHYDGVGLAAPQVGISQRFFVMDVGN-----GPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKY 119 (176)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEECSSS-----CCEEEEEEEEEEECSCEEEEEECCTTSTTCCEEEEEESEEEEEE
T ss_pred HHHHHHHCCCeEEEehhcCcceEEEEEEcCC-----ceEEEECCEEEccCCcEEeccCCccCcCCcceEEecCCEEEEEE
Confidence 7999999999999999999999999999743 36899999999999998778999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccceehHhhhhhhhCCceeeecCCHHHHHHHHHHhc
Q 032961 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLE 129 (130)
Q Consensus 81 ~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~ 129 (130)
+|++|++++++++||+|||+|||+|||+|+||+||+++..|.++.++++
T Consensus 120 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~ 168 (176)
T 1lme_A 120 QNTRGEYVEEELEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLM 168 (176)
T ss_dssp ECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGBCC-----------
T ss_pred ECCCCCEEEEEEeCCeEEEeeehhHhhCCEeeeeeCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988877654
No 11
>4dr9_A Peptide deformylase; hydrolase-hydrolase inhibitor complex; HET: BB2; 1.90A {Synechococcus elongatus}
Probab=100.00 E-value=7.9e-55 Score=332.85 Aligned_cols=129 Identities=41% Similarity=0.693 Sum_probs=117.5
Q ss_pred ChHhhhcCCCeEEeccccCccceEEEEecCCCCCCceeEEEEcceEEeeCCcEeeCeeeccccCCCeeeecCCCceEEEE
Q 032961 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (130)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~pg~~~~V~R~~~I~v~~ 80 (130)
|++|||+++|+||||||||+++|+||++...+.....+.+||||+|++.|++....+|||||+||+++.|+||.+|+|+|
T Consensus 50 M~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~I~V~~ 129 (192)
T 4dr9_A 50 MLQTMYSADGIGLAAPQVGINKQLIVIDLELEDEQAPPLVLINPKIERTAGDLEQCQEGCLSIPGVYLDVERPEIVEVSY 129 (192)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCSSEEEECCCC-----CCEEEEEEEEEEEEEEEEEEEECCTTSTTCCEEEEEEEEEEEEE
T ss_pred HHHHHHHcCCeEEechhcCCceeEEEEEcCccccCcccEEEECCEEEECCCCEeeccCCCCCcCCeeeEecccceEEEEE
Confidence 89999999999999999999999999997643333457899999999999988889999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccceehHhhhhhhhCCceeeecCCHHHHHHHHHHhc
Q 032961 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLE 129 (130)
Q Consensus 81 ~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~ 129 (130)
+|++|++++++++||+|||+|||+|||+|+||+||+++..+.+.+.+++
T Consensus 130 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~~~~~~~~~ 178 (192)
T 4dr9_A 130 KDENGRPQRLVADGLLARCIQHEMDHLNGVLFVDRVENRLELNEALDKK 178 (192)
T ss_dssp ECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGCCCHHHHHHHHHHT
T ss_pred ECCCCCEEEEEEEChhhhhhhhHhHhhCCEeeEEEeCcHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998888776653
No 12
>3e3u_A Peptide deformylase; metallo-enzyme, hydrolase, iron, metal-binding, protein biosynthesis; HET: NVC; 1.56A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.9e-54 Score=330.95 Aligned_cols=129 Identities=28% Similarity=0.509 Sum_probs=116.8
Q ss_pred ChHhhhcCCCeEEeccccCccceEEEEecCCC--CCCceeEEEEcceEEeeCCcE-----eeCeeeccccCCCeeeecCC
Q 032961 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE--RGEGEEIVLVNPRVNKYSNKM-----IPYEEGCLSFPGIHADVERP 73 (130)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~--~~~~~~~v~iNP~I~~~s~~~-----~~~~EgClS~pg~~~~V~R~ 73 (130)
|++|||+++||||||||||+++|+||++..+. .....+.+||||+|+..++.. ...+|||||+||+++.|+||
T Consensus 40 M~eTM~~~~GvGLAApQIGv~~Ri~Vid~~~~~~~~~~~~~vlINP~I~~~~~~~~~~e~~~~~EGCLSvPg~~~~V~R~ 119 (197)
T 3e3u_A 40 MYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRA 119 (197)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEECCTTBCTTSCSEEEEEEEEEEESCCCCSCCCTTTCEEECTTSTTCEEECCCC
T ss_pred HHHHHHHCCCeEEEccccCcceEEEEEEcCcccccccccceEEEcCEEEccCcceeccccccccCCCCCcCCCceeccCC
Confidence 89999999999999999999999999998643 122357899999999654432 36899999999999999999
Q ss_pred CceEEEEEcCCCCEEEEEEeccceehHhhhhhhhCCceeeecCCHHHHHHHHHHhc
Q 032961 74 ESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQLE 129 (130)
Q Consensus 74 ~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~~ 129 (130)
.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++.+|.+++++++
T Consensus 120 ~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~~ 175 (197)
T 3e3u_A 120 KWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVK 175 (197)
T ss_dssp SEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGCCHHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCEEEEEEEChhhhhhhhhhHhhCCEeeheecCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988864
No 13
>1v3y_A Peptide deformylase; protein synthesis, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP: d.167.1.1
Probab=100.00 E-value=2.9e-54 Score=329.86 Aligned_cols=127 Identities=36% Similarity=0.632 Sum_probs=114.5
Q ss_pred ChHhhhcCCCeEEeccccCccceEEEE-ecCCCCC----------CceeEEEEcceEEeeCCcEeeCeeeccccCCCee-
Q 032961 1 MFDVMYKTDGIGLSAPQVGINVQLMVF-NPVGERG----------EGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHA- 68 (130)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi-~~~~~~~----------~~~~~v~iNP~I~~~s~~~~~~~EgClS~pg~~~- 68 (130)
|++|||+++||||||||||+++|+||+ +..+... ...+.+||||+|++.|++.. .+|||||+||+++
T Consensus 33 M~eTM~~~~GvGLAApQIGv~~ri~Vi~d~~~~~~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~-~~EGCLSvPg~~~g 111 (192)
T 1v3y_A 33 MLETMFEAKGVGLAAPQIGLSQRLFVAVEYADEPEGEEERPLRELVRRVYVVANPVITYREGLVE-GTEGCLSLPGLYSE 111 (192)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEEC------------CTTTCSCEEEEEEEEEEEEECCEE-EEECCTTSTTCCEE
T ss_pred HHHHHHhCCCcEEEecccCcceEEEEEEccCccccccccccccccccCceEEECCEEEEcCCcEE-EeCCCCCcCCEecc
Confidence 899999999999999999999999999 7543210 13568999999999999876 8999999999999
Q ss_pred eecCCCceEEEEEcCCCCEEEEEEeccceehHhhhhhhhCCceeeecCCHHHHHHHHHHh
Q 032961 69 DVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQL 128 (130)
Q Consensus 69 ~V~R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~ 128 (130)
.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+||+||+++..|..+.+++
T Consensus 112 ~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~~~~ 171 (192)
T 1v3y_A 112 EVPRAERIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERLPKPKREAFLEAN 171 (192)
T ss_dssp EEEECSEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGSCHHHHHHHHHHT
T ss_pred cccccCEEEEEEECCCCCEEEEEEeccEEEEeehhhHhhCCEeEEEecCHhHhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887765
No 14
>1y6h_A Peptide deformylase; open and close conformation, PDF, hydrolase; 2.20A {Leptospira interrogans} SCOP: d.167.1.1 PDB: 1sv2_A* 1vey_A* 1vev_A 1vez_A 1szz_A*
Probab=100.00 E-value=3.2e-55 Score=331.45 Aligned_cols=128 Identities=38% Similarity=0.683 Sum_probs=115.2
Q ss_pred ChHhhhcCCCeEEeccccCccceEEEEecCCCCC-----CceeEEEEcceEEeeCCcEeeCeeeccccCCCeeeecCCCc
Q 032961 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERG-----EGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPES 75 (130)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~-----~~~~~v~iNP~I~~~s~~~~~~~EgClS~pg~~~~V~R~~~ 75 (130)
|++|||+++||||||||||+++|+||++..+... ...+.+||||+|++.|++....+|||||+||+++.|+||.+
T Consensus 37 M~~Tm~~~~GvGLAApQIGv~~ri~vid~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~ 116 (177)
T 1y6h_A 37 MFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQ 116 (177)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEECCSSCTTSTTSCCCCCEEEEEEEEEECCSCEEEEEEEETTEEEEEEEEEEESE
T ss_pred HHHHHHHCCCeEEEehhcCCceeEEEEEccCccccccccccCcEEEECCEEEEcCCCEEecccCCcccCCeeeeeeccce
Confidence 8999999999999999999999999999753211 12368999999999999977789999999999999999999
Q ss_pred eEEEEEcCCCCEEEEEEeccceehHhhhhhhhCCceeeecCCHHHHHHHHHHh
Q 032961 76 VKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIREQL 128 (130)
Q Consensus 76 I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~~~ 128 (130)
|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++..|..+.+++
T Consensus 117 I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~~~~~~~~ 169 (177)
T 1y6h_A 117 IRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETL 169 (177)
T ss_dssp EEEEEECTTCCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGBSCTTSEEEHHHH
T ss_pred EEEEEECCCCCEEEEEEeCceeEehhhhHHHhCCEeeeeecChhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999987766555443
No 15
>3dld_A Peptide deformylase; bacterial blight, XOO1075, xanthomonas oryzae PV. oryzae KACC10331, hydrolase; 2.60A {Xanthomonas oryzae PV} SCOP: d.167.1.0
Probab=100.00 E-value=4e-55 Score=329.42 Aligned_cols=126 Identities=32% Similarity=0.494 Sum_probs=115.0
Q ss_pred ChHhhhcCCCeEEeccccCccceEEEEecCCCC-----CCceeEEEEcceEEeeCCcEeeCeeeccccCCCeeeecCCCc
Q 032961 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGER-----GEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPES 75 (130)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~-----~~~~~~v~iNP~I~~~s~~~~~~~EgClS~pg~~~~V~R~~~ 75 (130)
|++|||+++|+||||||||+++|+||++..... ....+.+||||+|++.|++....+|||||+||+++.|+||.+
T Consensus 35 M~eTm~~~~GvGLAApQIGv~~ri~vid~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~~~~V~R~~~ 114 (171)
T 3dld_A 35 MFETMGAAHGVGLAAPQIAVDLQLMVFGFEASERYPEAPAVPLTALANAQIEPLSDEMENGWEGCLSIPGLRAVIPRYRY 114 (171)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCSSEEEEEESSCSSSCSCCCEEEEEEEEEEEEESSSCEEEEEEEETTEEEEEEEEEEESE
T ss_pred HHHHHHHcCCEEEEccccCCceeEEEEEcccccccccccccCCEEEECCEEEEcCCceeecCCCccccCCceEeeeCChh
Confidence 899999999999999999999999999975421 112478999999999999988899999999999999999999
Q ss_pred eEEEEEcCCCCEEEEEEeccceehHhhhhhhhCCceeeecCCHHHHHHHHH
Q 032961 76 VKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIRE 126 (130)
Q Consensus 76 I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~~ 126 (130)
|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++.+|..+.+
T Consensus 115 I~v~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~kr~~~~~ 165 (171)
T 3dld_A 115 IRYRGFAPDGSPIEREAEGFHARVVQHEYDHLVGRLYPSRIENFDTFGFDD 165 (171)
T ss_dssp EEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGCSCGGGCEETT
T ss_pred cEEEEECCCCCEEEEEEeChhhhhhhhHhHhcCCEeehhcCCHHHhhhhHH
Confidence 999999999999999999999999999999999999999999988764443
No 16
>1ws0_A Peptide deformylase 1; alpha + beta topology, hydrolase; 1.70A {Bacillus cereus} PDB: 1ws1_A*
Probab=100.00 E-value=7.7e-55 Score=323.72 Aligned_cols=121 Identities=36% Similarity=0.629 Sum_probs=109.9
Q ss_pred ChHhhhcCCCeEEeccccCccceEEEEecCCCCCCceeEEEEcceEEeeCCcEeeCeeeccccCCCeeeecCCCceEEEE
Q 032961 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGIHADVERPESVKIDA 80 (130)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~pg~~~~V~R~~~I~v~~ 80 (130)
|++|||+++|+||||||||+++|+||++..+. ..+.+||||+|++.|++. ..+|||||+||+++.|+||.+|+|+|
T Consensus 35 M~~Tm~~~~GvGLAApQIGv~~ri~vid~~~~---~~~~vlINP~I~~~s~~~-~~~EGCLSvPg~~~~V~R~~~I~v~~ 110 (156)
T 1ws0_A 35 MHETMLIADGVGLAAPQVGVSLQVAVVDVDDD---TGKIELINPSILEKRGEQ-VGPEGCLSFPGLYGEVERADYIKVRA 110 (156)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEECCTT---TCEEEEEEEEEEEEEEEE-EEEECCTTSTTCCEEEEEEEEEEEEE
T ss_pred HHHHHHHCCCEEEEhHHcCcceeEEEEEccCC---cCcEEEECCEEEccCCCE-EeccCCcccCCeeeEeecccEEEEEE
Confidence 79999999999999999999999999997542 124899999999999886 68999999999999999999999999
Q ss_pred EcCCCCEEEEEEeccceehHhhhhhhhCCceeeecCCHHHHHHHH
Q 032961 81 RDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVLDSIR 125 (130)
Q Consensus 81 ~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~~~~~ 125 (130)
+|++|++++.+++||+|||+|||+|||+|+||+||+++.+|++++
T Consensus 111 ~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~r~~~~ 155 (156)
T 1ws0_A 111 QNRRGKVFLLEAEGFLARAIQHEIDHLHGVLFTSKVTRYYEENEL 155 (156)
T ss_dssp ECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGTEEEECC----
T ss_pred ECCCCCEEEEEEeCceEEEeEehhHhhCCEeeeeEcCHHHHHHhh
Confidence 999999999999999999999999999999999999987776553
No 17
>3g5k_A Peptide deformylase, mitochondrial; actinonin, hydrolase, iron, metal-bindi mitochondrion, protein biosynthesis, transit peptide; HET: BB2; 1.70A {Homo sapiens} PDB: 3g5p_A
Probab=100.00 E-value=1.8e-53 Score=323.30 Aligned_cols=121 Identities=34% Similarity=0.544 Sum_probs=110.5
Q ss_pred ChHhhhcCCCeEEeccccCccceEEEEecCCCC--------------CCceeEEEEcceEEeeCCcEeeCeeeccccCCC
Q 032961 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGER--------------GEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGI 66 (130)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~--------------~~~~~~v~iNP~I~~~s~~~~~~~EgClS~pg~ 66 (130)
|++|||+++||||||||||+++|+||++..... ....+.+||||+|++.|++....+|||||+||+
T Consensus 39 M~eTM~~~~GvGLAApQIGv~~Ri~vid~~~~~~~~~~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~ 118 (183)
T 3g5k_A 39 LVQVMRRRRCVGLSAPQLGVPRQVLALELPEALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGF 118 (183)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEEECHHHHHTSCHHHHHHHTCCCEEEEEEEEEEEEEEEEEEEEEEECCTTSTTE
T ss_pred HHHHHHHcCCeEEeccccCCceeEEEEEcCccccccccccccccccccccCceEEECCeEEecCCCEEecccCccCcCCc
Confidence 799999999999999999999999999964310 012357999999999998888899999999999
Q ss_pred eeeecCCCceEEEEEcCCCCEEEEEEeccceehHhhhhhhhCCceeeecCCHHHH
Q 032961 67 HADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVL 121 (130)
Q Consensus 67 ~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~ 121 (130)
++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||++++.+
T Consensus 119 ~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~s~ 173 (183)
T 3g5k_A 119 LACVPRFQAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSRTF 173 (183)
T ss_dssp EEEEEEEEEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGTSCGGGC
T ss_pred cEEeeCcceeEEEEECCCCCEEEEEEeChhheehhhHHHHhCCEeEEEEeCHHHh
Confidence 9999999999999999999999999999999999999999999999999998754
No 18
>1zxz_A PDF, peptide deformylase, mitochondrial; PDF1A, eukaryote, higher plant, zinc ION, hydrolase; 2.80A {Arabidopsis thaliana} PDB: 1zy0_A 1zy1_A
Probab=100.00 E-value=1.5e-52 Score=321.40 Aligned_cols=121 Identities=39% Similarity=0.634 Sum_probs=110.0
Q ss_pred ChHhhhcCCCeEEeccccCccceEEEEecCCC--------------CCCceeEEEEcceEEeeCCcEeeCeeeccccCCC
Q 032961 1 MFDVMYKTDGIGLSAPQVGINVQLMVFNPVGE--------------RGEGEEIVLVNPRVNKYSNKMIPYEEGCLSFPGI 66 (130)
Q Consensus 1 m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~--------------~~~~~~~v~iNP~I~~~s~~~~~~~EgClS~pg~ 66 (130)
|++|||+++||||||||||+++|+||++.... .....+.+||||+|++.|++....+|||||+||+
T Consensus 38 M~eTM~~~~GVGLAApQIGv~~Ri~Vid~~~~~~~~~~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~EGCLSvPg~ 117 (197)
T 1zxz_A 38 MIKVMRLAPGVGLAAPQIGVPLRIIVLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGF 117 (197)
T ss_dssp HHHHHHHTTCSEEEGGGGTCCBSEEEEEECHHHHHSSCHHHHHHTTCCCEEEEEEEEEEEEESSSCEEEEEEEETTEEEE
T ss_pred HHHHHHhCCCcEEEccccCcceEEEEEEcCcccccccccccccccccCCCCceEEECCEEEecCCCEEeeeeCCcccCCe
Confidence 79999999999999999999999999986310 1112358999999999999877889999999999
Q ss_pred eeeecCCCceEEEEEcCCCCEEEEEEeccceehHhhhhhhhCCceeeecCCHHHH
Q 032961 67 HADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVL 121 (130)
Q Consensus 67 ~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~ 121 (130)
++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+||+||+++..+
T Consensus 118 ~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~ 172 (197)
T 1zxz_A 118 RAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMVPRTF 172 (197)
T ss_dssp EEEEEEESEEEEEEECTTCCEEEEEEEHHHHHHHHHHHHHHTTCCGGGTBCTTCC
T ss_pred eeeEecccEEEEEEECCCCCEEEEEEeChhhhHHHHHHHHhCCEeeeeecCHHHH
Confidence 9999999999999999999999999999999999999999999999999998544
No 19
>2okl_A Peptide deformylase 2; hydrolase; HET: BB2 CIT; 1.70A {Bacillus cereus} PDB: 1lqy_A*
Probab=100.00 E-value=8.4e-52 Score=314.64 Aligned_cols=121 Identities=32% Similarity=0.581 Sum_probs=108.7
Q ss_pred ChHhhhc------------CCCeEEeccccCccceEEEEecCCCCCCceeEEEEcceEEeeCCcEe--eCeeeccccCC-
Q 032961 1 MFDVMYK------------TDGIGLSAPQVGINVQLMVFNPVGERGEGEEIVLVNPRVNKYSNKMI--PYEEGCLSFPG- 65 (130)
Q Consensus 1 m~~tm~~------------~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~v~iNP~I~~~s~~~~--~~~EgClS~pg- 65 (130)
|++||++ ++||||||||||+++|+||++..+..+...+.+||||+|++.|++.. ..+|||||+||
T Consensus 38 M~eTm~~~~~~~~~~~y~~~~GvGLAApQIGv~~ri~vid~~~~~~~~~~~vlINP~I~~~s~~~~~~~~~EGCLSvPg~ 117 (185)
T 2okl_A 38 MIEFVINSQDPEMAEKYSLRPGIGLAAPQIGVSKKMIAVHVTDADGTLYSHALFNPKIISHSVERTYLQGGEGCLSVDRE 117 (185)
T ss_dssp HHHHHHHHTSHHHHHHTTCCCCSEEEGGGGTCCBSEEEEEEECTTCCEEEEEEEEEEEEEECSSEEECTTCCCCTTCCSC
T ss_pred HHHHHHhhhhcchhccccCCCeEEEEhhhcCcCeeEEEEEccCccCCccceEEECCEEEccCCcCccCCCCccCccccCe
Confidence 7899953 68999999999999999999975432234478999999999999865 46999999997
Q ss_pred CeeeecCCCceEEEEEcCCCCEEEEEEeccceehHhhhhhhhCCceeeecCCHHHH
Q 032961 66 IHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVL 121 (130)
Q Consensus 66 ~~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~ 121 (130)
+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++..+
T Consensus 118 ~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~ 173 (185)
T 2okl_A 118 VPGYVPRYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKENP 173 (185)
T ss_dssp CCSCCCEESEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGSCSSCT
T ss_pred eeEEeecccEEEEEEECCCCCEEEEEEeCceEEehhhhHHHhCCEeeeeecCccCC
Confidence 99999999999999999999999999999999999999999999999999987654
No 20
>2os0_A Peptide deformylase; PDF, hydrolase; 1.30A {Enterococcus faecalis} PDB: 2os1_A* 3g6n_A 3cmd_A
Probab=100.00 E-value=2.2e-51 Score=312.94 Aligned_cols=121 Identities=26% Similarity=0.493 Sum_probs=107.2
Q ss_pred ChHhhhc------------CCCeEEeccccCccceEEEEecCC-CCCC---ceeEEEEcceEEeeCCcEe--eCeeeccc
Q 032961 1 MFDVMYK------------TDGIGLSAPQVGINVQLMVFNPVG-ERGE---GEEIVLVNPRVNKYSNKMI--PYEEGCLS 62 (130)
Q Consensus 1 m~~tm~~------------~~gvGLAApQIG~~~ri~vi~~~~-~~~~---~~~~v~iNP~I~~~s~~~~--~~~EgClS 62 (130)
|++||++ ++||||||||||+++|+||++..+ ..+. ..+.+||||+|++.|++.. ..+|||||
T Consensus 37 M~eTm~~~~~~~~~~~y~~~~GvGLAApQIGv~~ri~vid~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~~~EGCLS 116 (188)
T 2os0_A 37 MLTFLKNSQDPVKAEELQLRGDVGLAAPQLDISKRIIAVHVPSNDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCLS 116 (188)
T ss_dssp HHHHHHHHHSHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEECC---------EEEEEEEEEEEEECSCEEEETTCCCCTT
T ss_pred HHHHHHhhhhcchhcccccCCcEEEEhhhcCcceeEEEEECCCcccccccccccEEEEcCEEEecCCcEecCCCCcCcce
Confidence 7899953 689999999999999999999754 1111 2468999999999998865 56999999
Q ss_pred cCC-CeeeecCCCceEEEEEcCCCCEEEEEEeccceehHhhhhhhhCCceeeecCCHHHH
Q 032961 63 FPG-IHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVL 121 (130)
Q Consensus 63 ~pg-~~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~ 121 (130)
+|| +++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||+++..+
T Consensus 117 vPg~~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~ 176 (188)
T 2os0_A 117 VDRDVPGYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKENP 176 (188)
T ss_dssp CCSCCCSCCCEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGSCSSST
T ss_pred ECCCeEEEeecccEEEEEEECCCCCEEEEEEeCceeEhhhhHHHHhCCEeeeEEcCCcCC
Confidence 997 99999999999999999999999999999999999999999999999999987654
No 21
>1lm4_A Peptide deformylase PDF1; metalloenzyme, hydrolase; 1.45A {Staphylococcus aureus} SCOP: d.167.1.1 PDB: 1lqw_A 2ai9_A 1lmh_A 1q1y_A*
Probab=100.00 E-value=1.9e-51 Score=314.69 Aligned_cols=121 Identities=33% Similarity=0.628 Sum_probs=108.7
Q ss_pred ChHhhhc------------CCCeEEeccccCccceEEEEecCCC-CCCceeEEEEcceEEeeCCcEe--eCeeeccccCC
Q 032961 1 MFDVMYK------------TDGIGLSAPQVGINVQLMVFNPVGE-RGEGEEIVLVNPRVNKYSNKMI--PYEEGCLSFPG 65 (130)
Q Consensus 1 m~~tm~~------------~~gvGLAApQIG~~~ri~vi~~~~~-~~~~~~~v~iNP~I~~~s~~~~--~~~EgClS~pg 65 (130)
|++||++ ++||||||||||+++|+||++..+. .+...+.+||||+|++.|++.. ..+|||||+||
T Consensus 48 M~eTM~~~~~~~~~~~y~~~~GVGLAApQIGv~~Ri~vid~~~~~~~~~~~~vlINP~Ii~~s~e~~~~~~~EGCLSvPg 127 (194)
T 1lm4_A 48 MREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDD 127 (194)
T ss_dssp HHHHHHHHHSHHHHHHHTCCCBSEEEGGGGTCCBSEEEEEECCCSSSCCEEEEEEEEEEEEECSSEEECTTCCCCTTCSS
T ss_pred HHHHHHhhhhcchhhhcccCCceEEEecccCcceeEEEEEcCCccccccccEEEECCEEEecCCcEecCCCCcCCceECC
Confidence 7899953 6899999999999999999997542 1123478999999999999865 46999999997
Q ss_pred -CeeeecCCCceEEEEEcCCCCEEEEEEeccceehHhhhhhhhCCceeeecCCHHHH
Q 032961 66 -IHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVL 121 (130)
Q Consensus 66 -~~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~ 121 (130)
+++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+||+||+++..+
T Consensus 128 ~~~~~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~ 184 (194)
T 1lm4_A 128 NVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKNHP 184 (194)
T ss_dssp CCCSCCCEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGCCSSST
T ss_pred ceeEEeccccEEEEEEECCCCCEEEEEEeCceeEhhhhHHHHhCCEeeeeecCcccC
Confidence 99999999999999999999999999999999999999999999999999998655
No 22
>3svj_P Peptide deformylase 3; alpha-beta, metal binding protein, HYDR hydrolase inhibitor complex; HET: 4LI; 1.55A {Streptococcus pneumoniae} SCOP: d.167.1.1 PDB: 3str_P* 3sw8_P* 4eox_P* 1lm6_A 2aia_A* 2ai7_A* 2aie_P* 2os3_A*
Probab=100.00 E-value=3.7e-51 Score=314.98 Aligned_cols=121 Identities=29% Similarity=0.493 Sum_probs=107.0
Q ss_pred ChHhhhc------------CCCeEEeccccCccceEEEEecCCCC------CC--ceeEEEEcceEEeeCCcEe--eCee
Q 032961 1 MFDVMYK------------TDGIGLSAPQVGINVQLMVFNPVGER------GE--GEEIVLVNPRVNKYSNKMI--PYEE 58 (130)
Q Consensus 1 m~~tm~~------------~~gvGLAApQIG~~~ri~vi~~~~~~------~~--~~~~v~iNP~I~~~s~~~~--~~~E 58 (130)
|++|||+ ++||||||||||+++|+||++..+.. .. ..+.+||||+|++.|++.. ..+|
T Consensus 49 M~eTM~~~~d~~~~~~~~~~~GVGLAApQIGv~~Ri~Vid~~~~~~~~~~~~~~~~~~~vlINP~I~~~s~~~~~~~~~E 128 (203)
T 3svj_P 49 MMQFLKHSQDPVMAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGE 128 (203)
T ss_dssp HHHHHHHHTSHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEEECC---------CEEEEEEEEEEEEEEECSSEEEETTCC
T ss_pred HHHHHHHhccchhhhccccCCcEEEeccccCCceeEEEEEcCccccccccccccCcccEEEECCEEEecCCceecccccc
Confidence 7889986 47999999999999999999975421 11 1368999999999998764 4799
Q ss_pred eccccC-CCeeeecCCCceEEEEEcCCCCEEEEEEeccceehHhhhhhhhCCceeeecCCHHHH
Q 032961 59 GCLSFP-GIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVL 121 (130)
Q Consensus 59 gClS~p-g~~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~ 121 (130)
||||+| |+++.|+||.+|+|+|+|++|++++++++||+|||+|||+|||+|+||+||++++.+
T Consensus 129 GCLSvPg~~~g~V~R~~~I~V~~~D~~G~~~~~~~~G~~Ar~iQHEiDHL~GiLfiDrl~~~~~ 192 (203)
T 3svj_P 129 GCLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINEKDP 192 (203)
T ss_dssp CCTTCCSCCCSCBCEESSEEEEEECTTSCEEEEEECHHHHHHHHHHHHHHTTCCGGGGBCSSCT
T ss_pred CccCcCCCcEEEecCcceeEEEEECCCCCEEEEEEEChhhhhhhhHhHhcCCEeeeeEcCCcCc
Confidence 999999 689999999999999999999999999999999999999999999999999998654
No 23
>3l87_A Peptide deformylase; hydrolase, iron, metal-binding, PR biosynthesis; 2.00A {Streptococcus mutans}
Probab=100.00 E-value=3.2e-50 Score=315.63 Aligned_cols=121 Identities=31% Similarity=0.468 Sum_probs=107.4
Q ss_pred ChHhhhc------------CCCeEEeccccCccceEEEEecCCCC-------CC--ceeEEEEcceEEeeCCcEe--eCe
Q 032961 1 MFDVMYK------------TDGIGLSAPQVGINVQLMVFNPVGER-------GE--GEEIVLVNPRVNKYSNKMI--PYE 57 (130)
Q Consensus 1 m~~tm~~------------~~gvGLAApQIG~~~ri~vi~~~~~~-------~~--~~~~v~iNP~I~~~s~~~~--~~~ 57 (130)
|++|||+ ++||||||||||+++|+||++..+.. +. ..+.+||||+|++.|++.. ..+
T Consensus 83 M~eTM~~a~d~~~~~~~~~a~GVGLAAPQIGv~kRi~Vid~~~~~~~~~~~~~~~~~~~~vlINP~Ii~~s~e~~~~~~~ 162 (238)
T 3l87_A 83 MLQFLKNSQDPVTAEKMELRGGVGLAAPQLDISKRIIAVLIPNPEDKDGNPPKEAYALKEVMYNPRIIAHSVQDAALADG 162 (238)
T ss_dssp HHHHHHHHHSHHHHHHHTCCCCSEEEGGGGTCCBSEEEEEEECCCC----CCSSSEEEEEEEEEEEEEEECSSEEEETTC
T ss_pred HHHHHHHhccchhhhhcccCCceEEeccccCCceeEEEEEcCcccccccccccccCcccEEEECCEEEeccCceeccccc
Confidence 7889986 47999999999999999999975421 11 1368999999999998764 479
Q ss_pred eeccccC-CCeeeecCCCceEEEEEcCCCCEEEEEEeccceehHhhhhhhhCCceeeecCCHHHH
Q 032961 58 EGCLSFP-GIHADVERPESVKIDARDINGARFSVSLSDLPARVFQHEFDHLQGILFFERMTDDVL 121 (130)
Q Consensus 58 EgClS~p-g~~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~Ar~~QHEiDHL~G~l~~Dr~~~~~~ 121 (130)
|||||+| |+++.|+||.+|+|+|+|++|++++++++||+|||||||+|||+|+||+||++++.+
T Consensus 163 EGCLSvPg~~~g~V~R~~~I~V~~~D~~G~~~~~~~~G~lAr~iQHEiDHLdGiLfiDrls~~~~ 227 (238)
T 3l87_A 163 EGCLSVDRVVEGYVIRHSRVTIEYYDKNSDKKKLKLKGYQSIVVQHEIDHTNGIMFFDRINEKNP 227 (238)
T ss_dssp CCCTTCCSCCCSCBCEESCEEEEEECTTCCEEEEEECHHHHHHHHHHHHHHTTCCGGGGBCSSCT
T ss_pred CCCcccCCCccEEecChhheEEEEECCCCCEEEEEEeChhhhHHhHHhHhcCCEeeeeecCCCCC
Confidence 9999999 689999999999999999999999999999999999999999999999999998654
No 24
>2kvz_A ISPE; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Listeria monocytogenes}
Probab=37.27 E-value=27 Score=22.49 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=19.8
Q ss_pred cCCCceEEEEEcCCCCEEE--EEEeccc
Q 032961 71 ERPESVKIDARDINGARFS--VSLSDLP 96 (130)
Q Consensus 71 ~R~~~I~v~~~d~~g~~~~--~~~~g~~ 96 (130)
.....|+|.|.|.+|+... ..+.|..
T Consensus 4 ~k~~~VtV~YvDe~Gn~La~~~~ltG~v 31 (85)
T 2kvz_A 4 GKPNQVTVNYLDENNTSIAPSLYLSGLF 31 (85)
T ss_dssp SCCCCEEEEEECSSSCEEEEEEEECCCT
T ss_pred ccCCeEEEEEECCCCCCCCCCeEEeeeC
Confidence 3567899999999999864 5556654
No 25
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=32.98 E-value=40 Score=22.02 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=17.2
Q ss_pred CceEEEEEcCCCCEEEEEEec
Q 032961 74 ESVKIDARDINGARFSVSLSD 94 (130)
Q Consensus 74 ~~I~v~~~d~~g~~~~~~~~g 94 (130)
..+.|+|.|.+|.++.+.-++
T Consensus 44 ~~~~ikY~DEenD~v~i~Sq~ 64 (87)
T 2bkf_A 44 NTIQIKYLDEENEEVSINSQG 64 (87)
T ss_dssp SSEEEEEECTTSCEEEECSHH
T ss_pred CceEEEEEcCCCCEEEEecHH
Confidence 377999999999998876543
No 26
>3uip_D E3 SUMO-protein ligase ranbp2; UBC9, nuclear pore complex, ligase isomerase-protein binding complex; HET: CME; 2.29A {Homo sapiens} PDB: 3uio_D* 3uin_D
Probab=28.27 E-value=21 Score=22.28 Aligned_cols=17 Identities=24% Similarity=0.563 Sum_probs=13.4
Q ss_pred hHhhhhhhhCCceeeec
Q 032961 99 VFQHEFDHLQGILFFER 115 (130)
Q Consensus 99 ~~QHEiDHL~G~l~~Dr 115 (130)
=|+|++=-|||+||.|-
T Consensus 48 dfetavrklng~ly~~~ 64 (67)
T 3uip_D 48 DFETAVKKLNGKLYLDG 64 (67)
T ss_dssp CHHHHHHTTTTCCCC--
T ss_pred HHHHHHHHhCCceecCC
Confidence 37899999999999873
No 27
>3npp_A PFAM DUF1093 family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.15A {Bacillus subtilis}
Probab=25.96 E-value=66 Score=20.43 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=17.8
Q ss_pred CceEEEEEcCCCCEEEEEEec
Q 032961 74 ESVKIDARDINGARFSVSLSD 94 (130)
Q Consensus 74 ~~I~v~~~d~~g~~~~~~~~g 94 (130)
..=++.++|.+|+..++++..
T Consensus 28 y~Y~l~~yde~G~~k~l~f~~ 48 (87)
T 3npp_A 28 TEYTLDGYNASGKKEEVTFFA 48 (87)
T ss_dssp EEEEEEEECTTCCEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEc
Confidence 456899999999999988864
No 28
>2k5q_A Hypothetical membrane associated protein BCR97A; NESG, Q812L6 protein, GFT structural genomics, PSI-2, protein structure initiative; NMR {Bacillus cereus atcc 14579} SCOP: b.40.13.1
Probab=24.85 E-value=66 Score=21.31 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=17.5
Q ss_pred ceEEEEEcCCCCEEEEEEec
Q 032961 75 SVKIDARDINGARFSVSLSD 94 (130)
Q Consensus 75 ~I~v~~~d~~g~~~~~~~~g 94 (130)
.=++.++|.+|+..++++.+
T Consensus 36 ~Y~l~~yde~Gkek~l~f~~ 55 (105)
T 2k5q_A 36 EYKLTGFDKDGKEKELEFTA 55 (105)
T ss_dssp EEEEEEECSSCCEEEEEEEE
T ss_pred EEEEEEECCCCCEEEEEEec
Confidence 36889999999999999876
No 29
>2kt7_A Putative peptidoglycan bound protein (LPXTG motif); immunoglobulin fold, all-beta, peptidoglycan binding protein, structural genomics; NMR {Listeria monocytogenes}
Probab=23.09 E-value=59 Score=21.61 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=17.2
Q ss_pred CCceEEEEEcCCCCEEE--EEEec
Q 032961 73 PESVKIDARDINGARFS--VSLSD 94 (130)
Q Consensus 73 ~~~I~v~~~d~~g~~~~--~~~~g 94 (130)
-..|+|.|.|.+|+... ..+.|
T Consensus 5 ~~~VtV~YvDe~Gn~Ia~~~~ltG 28 (102)
T 2kt7_A 5 NFTVKVEYVDADGAEIAPSDTLTD 28 (102)
T ss_dssp TCCEEEEEEETTSSEEEEEEEECS
T ss_pred CCEEEEEEEcCCCCCCCCCEeecC
Confidence 45799999999999875 45555
No 30
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=22.67 E-value=1.3e+02 Score=25.06 Aligned_cols=72 Identities=15% Similarity=0.212 Sum_probs=52.3
Q ss_pred eeeccccCCCeeeecCCCceEEEEEcCCCCEEEEEEe-c-cceehHhhhhhh-hCCceeeecCCHHHHHHHHHHh
Q 032961 57 EEGCLSFPGIHADVERPESVKIDARDINGARFSVSLS-D-LPARVFQHEFDH-LQGILFFERMTDDVLDSIREQL 128 (130)
Q Consensus 57 ~EgClS~pg~~~~V~R~~~I~v~~~d~~g~~~~~~~~-g-~~Ar~~QHEiDH-L~G~l~~Dr~~~~~~~~~~~~~ 128 (130)
.=||.|+-.--..+..+..|++.|.-.+|..+..+++ + -++++++-=.|- --|-..+|+++....+...+++
T Consensus 302 TvGl~TLR~eHV~l~~~~~V~FdF~GKdgir~~~~V~vD~~l~k~L~~~~~~K~Pg~~LF~~l~s~~lN~yL~el 376 (432)
T 2b9s_A 302 TVGCCSLRVEHIQLMPDNIVRFDFLGKDSIRYQNDVAVLPEVYALLQRFTRRKSPGMDIFDQLNPTQLNDHLKSF 376 (432)
T ss_dssp CCCGGGCBGGGEEECTTSEEEEEEECGGGCEEEEEEECCHHHHHHHHHHHTTCCTTSBTTTTCCHHHHHHHHTTT
T ss_pred CEeecccccccEEEcCCCeEEEEEecCCceEEEEEEecCHHHHHHHHHHHhCCCChhHhcccCCHHHHHHHHHHH
Confidence 4499998877677766699999999999999986665 3 677777665543 0333455889888877665543
No 31
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=22.24 E-value=43 Score=21.73 Aligned_cols=44 Identities=14% Similarity=0.257 Sum_probs=32.0
Q ss_pred CcEeeCeeeccccCCCeeeecCCCceEEEEEcCCCCEEEEEEeccc
Q 032961 51 NKMIPYEEGCLSFPGIHADVERPESVKIDARDINGARFSVSLSDLP 96 (130)
Q Consensus 51 ~~~~~~~EgClS~pg~~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~ 96 (130)
++....|..|...|+.-..|.-...-+|.|+| |...+++....-
T Consensus 26 d~VlArW~D~~yYPAkI~sV~~~~~YtV~F~D--G~~etvk~~~IK 69 (85)
T 3qii_A 26 EQVLACWSDCRFYPAKVTAVNKDGTYTVKFYD--GVVQTVKHIHVK 69 (85)
T ss_dssp CEEEEECTTSCEEEEEEEEECTTSEEEEEETT--SCEEEEEGGGEE
T ss_pred CEEEEEeCCCCEeeEEEEEECCCCeEEEEEeC--CCeEEecHHHcc
Confidence 33344578899999876677777789999999 877776655443
No 32
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=21.23 E-value=79 Score=19.78 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=26.2
Q ss_pred eeCeeeccccC-CCe-eeecCCC-----ceEEEEEcCCCCEEE
Q 032961 54 IPYEEGCLSFP-GIH-ADVERPE-----SVKIDARDINGARFS 89 (130)
Q Consensus 54 ~~~~EgClS~p-g~~-~~V~R~~-----~I~v~~~d~~g~~~~ 89 (130)
.+.|..|..+| |.. ..+.|.. +..|-|++..|+++.
T Consensus 2 ~~~~~~~p~LP~GW~Re~~~R~~g~s~gk~DvyY~sP~Gkk~R 44 (75)
T 1d9n_A 2 AEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIR 44 (75)
T ss_dssp CSCCEECTTTCSSCEEEECSSSSSCTTCCCCEEEECSSSCEEC
T ss_pred CcccccCCCCCCCCEEEEEEecCCCCCCceEEEEECCCCCeee
Confidence 35688999996 553 3455664 688999999998754
No 33
>1sgo_A HSPC210, protein C14ORF129; HR969, structure, human protein, NESG, structural genomics, HS.4104 HOMO sapiens, NESG cluster ID 18152.; NMR {Homo sapiens} SCOP: d.82.3.1
Probab=21.15 E-value=41 Score=23.82 Aligned_cols=50 Identities=14% Similarity=0.315 Sum_probs=32.0
Q ss_pred EEEEEcCCCCEEE--EEEeccceehHhhhhhhhCCc----------eeeecCCHHHHHHHHHHh
Q 032961 77 KIDARDINGARFS--VSLSDLPARVFQHEFDHLQGI----------LFFERMTDDVLDSIREQL 128 (130)
Q Consensus 77 ~v~~~d~~g~~~~--~~~~g~~Ar~~QHEiDHL~G~----------l~~Dr~~~~~~~~~~~~~ 128 (130)
-+.-....|+... .+..|| |++-...|.+++- -.+|.++|.-|++|.++|
T Consensus 65 yiNv~T~Eg~~yCIelt~kGf--~Vvs~~~d~~d~~~~~~~fETl~~LL~~iSP~fr~~Fg~~L 126 (139)
T 1sgo_A 65 YINVETKERNRYCLELTEAGL--KVVGYAFDQVDDHLQTPYHETVYSLLDTLSPAYREAFGNAL 126 (139)
T ss_dssp EEEEECTTCCEEEEEEETTEE--EEEESSTTCCCTTCCCCEESSSHHHHHHHCHHHHHHHHHHH
T ss_pred EEEEEEecCCeEEEEEEccEE--EEecccCCccCcccccccccCHHHHHHHhCHHHHHHHHHHH
Confidence 3344456777754 444567 6666666666662 235678899999887665
No 34
>3u12_A USP37 protein; structural genomics, PH-domain, hydrolase, structural genomi consortium, SGC; 2.08A {Homo sapiens}
Probab=21.14 E-value=46 Score=23.63 Aligned_cols=60 Identities=17% Similarity=0.188 Sum_probs=41.1
Q ss_pred eeecCCCceEEEEEcCCCCE-EEEEEec-cceehHhhh---hhhh------CCceeeecCCHHHHHHHHHH
Q 032961 68 ADVERPESVKIDARDINGAR-FSVSLSD-LPARVFQHE---FDHL------QGILFFERMTDDVLDSIREQ 127 (130)
Q Consensus 68 ~~V~R~~~I~v~~~d~~g~~-~~~~~~g-~~Ar~~QHE---iDHL------~G~l~~Dr~~~~~~~~~~~~ 127 (130)
..|+|-++|++..+=-.|+. .++.+.. ....|++|= .-|| +..||+|+++...-+.++.-
T Consensus 44 E~VE~kkkv~LVv~F~~G~~~ktFQL~nNIksVvlr~~g~~qn~LhLTlknn~fLfIdKLs~~DaeqLK~F 114 (141)
T 3u12_A 44 EIVEKENKVSLVVHYNTGGIPRIFQLSHNIKNVVLRPSGAKQSRLMLTLQDNSFLSIDKVPSKDAEEMRLF 114 (141)
T ss_dssp EEEEETTEEEEEEEETTCSCCEEEECTTTEEEEEEEECSTTEEEEEEEETTCCEEEEEEEEHHHHHHHHHH
T ss_pred eeeeccceEEEEEEEeCCCccEEEEcccceeeEEEecCCCccceEEEEEecCcEEEEecCCHHHHHHHHHH
Confidence 56788888887666556766 7777774 667777762 1122 67899999997776655443
No 35
>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio}
Probab=20.93 E-value=54 Score=24.06 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=19.4
Q ss_pred CEEEEEEec---cceehHhhhhhhhCCcee
Q 032961 86 ARFSVSLSD---LPARVFQHEFDHLQGILF 112 (130)
Q Consensus 86 ~~~~~~~~g---~~Ar~~QHEiDHL~G~l~ 112 (130)
....+.+.. +..-.++||+=|.-|...
T Consensus 80 g~q~~sl~~~~C~~~g~i~HEl~HaLGf~H 109 (199)
T 3lqb_A 80 GKQVVSLNRKGCVYSGIAQHELNHALGFYH 109 (199)
T ss_dssp SEEEEEECTTTCCSHHHHHHHHHHHHTCCC
T ss_pred CcceEEecCCCCCccchHHHHHHHHhccce
Confidence 345555542 456799999999999764
No 36
>2k5w_A Hypothetical cytosolic protein BCR103A; unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus cereus atcc 14579} SCOP: b.40.13.1
Probab=20.91 E-value=87 Score=21.31 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=19.5
Q ss_pred CceEEEEEcCCCCEEEEEEeccc
Q 032961 74 ESVKIDARDINGARFSVSLSDLP 96 (130)
Q Consensus 74 ~~I~v~~~d~~g~~~~~~~~g~~ 96 (130)
..=++.++|.+|+..++++..-.
T Consensus 33 Y~Y~l~~yDe~GkeK~v~f~~~k 55 (117)
T 2k5w_A 33 RNYTLPAYDEDGVKKQITFRSTK 55 (117)
T ss_dssp ECEEEEEEETTCCEEEEEECCCT
T ss_pred EEEEEEEEcCCCCEEEEEEEeec
Confidence 45689999999999999998753
No 37
>2qcq_A Bone morphogenetic protein 3; BMP, TGF-beta, signaling protein; 2.21A {Homo sapiens}
Probab=20.65 E-value=1.5e+02 Score=19.43 Aligned_cols=34 Identities=18% Similarity=0.048 Sum_probs=25.1
Q ss_pred CCCeeeecCCCceEEEEEcCCCCEEEEEEeccce
Q 032961 64 PGIHADVERPESVKIDARDINGARFSVSLSDLPA 97 (130)
Q Consensus 64 pg~~~~V~R~~~I~v~~~d~~g~~~~~~~~g~~A 97 (130)
|..-..-.+...|.+-|+|.+|+.+..++.+..|
T Consensus 71 ~~pCCvPt~l~~ls~ly~d~~~~v~~~~~~~Mvv 104 (110)
T 2qcq_A 71 PEPCCVPEKMSSLSILFFDENKNVVLKVYPNMTV 104 (110)
T ss_dssp CCCCEEECSEEEEEEEEECTTCCEEEEEEEEEEE
T ss_pred CCCcCCCeeEccEEEEEEeCCCCEEEEEcCCcEE
Confidence 3333445677889999999999877777777655
Done!