BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032962
         (130 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VM0|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At2g34160
 pdb|1VM0|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At2g34160
 pdb|2Q3V|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At2g34160
 pdb|2Q3V|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At2g34160
          Length = 130

 Score =  174 bits (442), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/114 (77%), Positives = 98/114 (85%), Gaps = 2/114 (1%)

Query: 2   EVITEGVNNINISDASAASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIA 61
           E IT+GVNN N+  A+ + KKNRIQVSNTKKPLFFYVNLAKRY QQ+N+VELSALG AIA
Sbjct: 2   EEITDGVNNXNL--ATDSQKKNRIQVSNTKKPLFFYVNLAKRYXQQYNDVELSALGXAIA 59

Query: 62  TVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEKFDEL 115
           TVVT+ EILKNNG AVEKKI TS VDI+++  GRPVQKAKIEI L KSEKFDEL
Sbjct: 60  TVVTVTEILKNNGFAVEKKIXTSIVDIKDDARGRPVQKAKIEITLVKSEKFDEL 113


>pdb|1NH9|A Chain A, Crystal Structure Of A Dna Binding Protein Mja10b From The
           Hyperthermophile Methanococcus Jannaschii
          Length = 87

 Score = 30.8 bits (68), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 31  KKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNN-GLAVEKKITTSTVDIR 89
           KKP+  YV      +  ++EV + A G AI   V +AE+++N     ++ K      D  
Sbjct: 9   KKPVMNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKV 68

Query: 90  EETGGRPVQKAKIEILLGK 108
           +   GR V  + IEI+L K
Sbjct: 69  KNPDGREVNVSTIEIVLAK 87


>pdb|3AL0|B Chain B, Crystal Structure Of The Glutamine Transamidosome From
           Thermotoga Maritima In The Glutamylation State
          Length = 482

 Score = 28.9 bits (63), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 10/66 (15%)

Query: 10  NINISDASAASKKNRIQVSNTKKPLFFYVNLAKRY--------MQQHNEVELSALGMAIA 61
           NI++ D     + NR++V N     F +V  A  Y        M++  +VE    G  +A
Sbjct: 201 NISVVDTETGRQSNRVEVKNMNS--FRFVERALEYEFERIVKAMERGEDVERETRGWDMA 258

Query: 62  TVVTIA 67
           T +T++
Sbjct: 259 TKITVS 264


>pdb|3TOE|A Chain A, Structure Of Mth10b
 pdb|3TOE|B Chain B, Structure Of Mth10b
          Length = 91

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 20 SKKNRIQVSNTKKPLFFYVNLAKRYMQQH-NEVELSALGMAIATVVTIAEILKN 72
          S++N + + N  KP+  YV      M    +EV L A G+AI+  V +AEI++N
Sbjct: 2  SEENVVYIGN--KPVMNYVLAVVTQMNGGTSEVILKARGIAISRAVDVAEIVRN 53


>pdb|2HOE|A Chain A, Crystal Structure Of N-Acetylglucosamine Kinase (Tm1224)
           From Thermotoga Maritima At 2.46 A Resolution
          Length = 380

 Score = 26.2 bits (56), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 8/55 (14%)

Query: 49  NEVELSA-LGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKI 102
           + VEL+  LG+   TV  IA+I    G+ VE+K +   V       GRP +  KI
Sbjct: 35  SRVELAEELGLTKTTVGEIAKIFLEKGIVVEEKDSPKGV-------GRPTKSLKI 82


>pdb|1ZZM|A Chain A, Crystal Structure Of Yjjv, Tatd Homolog From Escherichia
          Coli K12, At 1.8 A Resolution
          Length = 259

 Score = 26.2 bits (56), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 7  GVNNINISDASAASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAI----AT 62
          GV  I +    A +    + ++   +PL+  + L    +++H++V L  L  A+    A 
Sbjct: 32 GVGKIIVPATEAENFARVLALAENYQPLYAALGLHPGMLEKHSDVSLEQLQQALERRPAK 91

Query: 63 VVTIAEI 69
          VV + EI
Sbjct: 92 VVAVGEI 98


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.127    0.326 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,762,788
Number of Sequences: 62578
Number of extensions: 88631
Number of successful extensions: 195
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 7
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)