BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032962
(130 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22969|Y2416_ARATH Uncharacterized protein At2g34160 OS=Arabidopsis thaliana
GN=At2g34160 PE=1 SV=1
Length = 130
Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/129 (77%), Positives = 112/129 (86%), Gaps = 2/129 (1%)
Query: 1 MEVITEGVNNINISDASAASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAI 60
ME IT+GVNN+N+ A+ + KKNRIQVSNTKKPLFFYVNLAKRYMQQ+N+VELSALGMAI
Sbjct: 1 MEEITDGVNNMNL--ATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAI 58
Query: 61 ATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEKFDELMAAAE 120
ATVVT+ EILKNNG AVEKKI TSTVDI+++ GRPVQKAKIEI L KSEKFDELMAAA
Sbjct: 59 ATVVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAAN 118
Query: 121 EEAINNEEQ 129
EE + E Q
Sbjct: 119 EEKEDAEAQ 127
>sp|A3CVI3|ALBA_METMJ DNA/RNA-binding protein Alba OS=Methanoculleus marisnigri (strain
ATCC 35101 / DSM 1498 / JR1) GN=albA PE=3 SV=1
Length = 91
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 21 KKNRIQVSNTKKPLFFYV-NLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGLA-VE 78
K N + V N KP+ YV + ++ EV + A G AI+ V AEI N LA V+
Sbjct: 3 KDNTVFVGN--KPVMNYVLAVVTQFNNGAEEVAIKARGKAISRAVDTAEIALNRFLANVD 60
Query: 79 KK-ITTSTVDIREETGGRPVQKAKIEILL 106
KK I TST I +TG V + IEI+L
Sbjct: 61 KKEIFTSTEMIDTDTGKTNV--SSIEIVL 87
>sp|Q07VC7|SECA1_RHOP5 Protein translocase subunit SecA 1 OS=Rhodopseudomonas palustris
(strain BisA53) GN=secA1 PE=3 SV=1
Length = 947
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 7 GVNNINISDASAASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTI 66
G I+ +D K + KP + L R+ +Q + A + +TI
Sbjct: 461 GYKQIDFADPKGMEKL--YAAARAGKPAKLFAVLNARFHEQEAYIVAEA---GVPGAITI 515
Query: 67 AEILKNNGL------AVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEKFDELMAAAE 120
A + G ++E +I TVDI +E + AKIE++ E+F EL+ AE
Sbjct: 516 ATNMAGRGTDIKLGGSLEMRIEHETVDITDEAE----KAAKIELIKADVERFRELVLRAE 571
Query: 121 E 121
E
Sbjct: 572 E 572
>sp|Q8TI16|ECFA_METAC Energy-coupling factor transporter ATP-binding protein EcfA
OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM
2834 / JCM 12185 / C2A) GN=ecfA PE=3 SV=1
Length = 274
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 49 NEVELSALGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREE 91
+++ L LG+ +++ +AE LKN+G+AV + T+S EE
Sbjct: 224 SDLSLRYLGLTPPSLIELAERLKNHGVAVPWEKTSSPSSFAEE 266
>sp|P60851|ALBA_NANEQ DNA/RNA-binding protein Alba OS=Nanoarchaeum equitans (strain
Kin4-M) GN=albA PE=3 SV=1
Length = 90
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 31 KKPLFFYV-NLAKRYMQQHNEVELSALGMAIATVVTIAEILKNNGLA 76
KKPL YV + ++MQ NEV + A G I+ V +AE ++ LA
Sbjct: 8 KKPLTNYVMAVVMQFMQGANEVVIKARGRNISRAVDVAERVRKRFLA 54
>sp|A8F5H5|GATB_THELT Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385
/ TMO) GN=gatB PE=3 SV=1
Length = 478
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 10 NINISDASAASKKNRIQVSNTKKPLFFYVNLAKRYMQQH--------NEVELSALGMAIA 61
NI+I D SA + NR++V N F ++ A Y QQ +VE G IA
Sbjct: 201 NISIYDESAHLQSNRVEVKNMNS--FRFIEKALEYEQQRIIEALKNNEDVEKETRGWDIA 258
Query: 62 TVVTIA 67
T +T++
Sbjct: 259 TKMTVS 264
>sp|Q57665|ALBA_METJA DNA/RNA-binding protein Alba OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=albA PE=1 SV=1
Length = 87
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 31 KKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKNN-GLAVEKKITTSTVDIR 89
KKP+ YV + ++EV + A G AI V +AE+++N ++ K D
Sbjct: 9 KKPVMNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKV 68
Query: 90 EETGGRPVQKAKIEILLGK 108
+ GR V + IEI+L K
Sbjct: 69 KNPDGREVNVSTIEIVLAK 87
>sp|Q8TWE6|ALBA2_METKA DNA/RNA-binding protein Alba 2 OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=albA2 PE=3
SV=1
Length = 93
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 20 SKKNRIQVSNTKKPLFFYV-NLAKRYMQQHNEVELSALGMAIATVVTIAEILKNN 73
+++N I V N KP+ YV + ++ + +EV+L A G AI+ V +AE ++NN
Sbjct: 2 AEENVIYVGN--KPVTNYVLAVMTQFSEGADEVKLVARGRAISRAVDVAEFIRNN 54
>sp|Q971T6|ALBA2_SULTO DNA/RNA-binding protein Alba 2 OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=albA2 PE=3 SV=1
Length = 90
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 18 AASKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILKN---NG 74
K N I +S TK+ + +++ + Q ++EVEL +G +I V + LK+ +G
Sbjct: 2 TVKKPNEILISRTKRVEDYVLDVIVMFNQGYDEVELKGVGNSIYKAVEVYNQLKDRLGDG 61
Query: 75 LAVEK 79
+ +EK
Sbjct: 62 IILEK 66
>sp|C5B780|SYP_EDWI9 Proline--tRNA ligase OS=Edwardsiella ictaluri (strain 93-146)
GN=proS PE=3 SV=1
Length = 572
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 65 TIAEILKNNGLAVEKKITTSTVDIREETG 93
TIAE+++ +GL +EK + T V EE+G
Sbjct: 262 TIAELVEQHGLPIEKTVKTLLVHASEESG 290
>sp|A5WCT9|MURC_PSYWF UDP-N-acetylmuramate--L-alanine ligase OS=Psychrobacter sp. (strain
PRwf-1) GN=murC PE=3 SV=1
Length = 476
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 56 LGMAIATVVTIAEILKNNGLAVEKKITTSTVDIREETGGRPVQKAKIEILLGKSEK 111
+G+ A + IAE++KN G V S DI+E + +Q IE+ +G K
Sbjct: 25 IGVGGAGMCGIAEVMKNQGYGV------SGSDIKESPVTKRLQSLGIEVFIGHDSK 74
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.125 0.315
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,758,558
Number of Sequences: 539616
Number of extensions: 1435232
Number of successful extensions: 3920
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 3911
Number of HSP's gapped (non-prelim): 43
length of query: 130
length of database: 191,569,459
effective HSP length: 96
effective length of query: 34
effective length of database: 139,766,323
effective search space: 4752054982
effective search space used: 4752054982
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)