Query 032962
Match_columns 130
No_of_seqs 101 out of 162
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 08:05:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1581 Ssh10b Archaeal DNA-bi 99.9 1.1E-25 2.4E-30 159.4 10.0 85 21-109 3-91 (91)
2 TIGR00285 DNA-binding protein 99.9 7.2E-25 1.6E-29 155.0 10.1 83 22-108 1-87 (87)
3 PRK04015 DNA/RNA-binding prote 99.9 1.7E-24 3.7E-29 154.2 10.4 87 20-109 2-91 (91)
4 PF01918 Alba: Alba; InterPro 99.5 4.7E-14 1E-18 93.6 8.2 60 23-83 1-68 (70)
5 KOG2567 Uncharacterized conser 99.1 6.7E-11 1.4E-15 92.7 5.0 91 18-109 14-115 (179)
6 PF12328 Rpp20: Rpp20 subunit 98.5 3.1E-07 6.6E-12 70.0 7.2 67 22-90 3-102 (144)
7 PF04232 SpoVS: Stage V sporul 86.0 2.8 6.1E-05 29.7 5.5 48 23-72 2-51 (86)
8 PF02780 Transketolase_C: Tran 76.8 7.4 0.00016 27.5 5.0 40 45-84 6-46 (124)
9 COG3967 DltE Short-chain dehyd 56.8 18 0.0004 30.2 4.1 44 21-71 4-47 (245)
10 COG3958 Transketolase, C-termi 55.0 15 0.00033 31.7 3.4 56 20-75 158-219 (312)
11 COG2359 SpoVS Stage V sporulat 50.8 64 0.0014 22.9 5.5 47 24-72 3-51 (87)
12 COG0504 PyrG CTP synthase (UTP 42.6 29 0.00064 32.0 3.5 33 52-85 10-43 (533)
13 PF12146 Hydrolase_4: Putative 36.0 62 0.0014 21.6 3.5 30 49-78 18-47 (79)
14 COG0022 AcoB Pyruvate/2-oxoglu 35.8 36 0.00078 29.6 2.8 49 38-86 189-239 (324)
15 cd03113 CTGs CTP synthetase (C 34.5 48 0.001 27.9 3.3 33 52-85 9-42 (255)
16 CHL00144 odpB pyruvate dehydro 31.7 80 0.0017 26.7 4.3 44 40-83 192-237 (327)
17 PRK11892 pyruvate dehydrogenas 28.8 82 0.0018 28.2 4.0 46 39-84 330-377 (464)
18 PF06418 CTP_synth_N: CTP synt 28.0 55 0.0012 27.9 2.7 33 52-85 10-43 (276)
19 PLN02683 pyruvate dehydrogenas 27.9 78 0.0017 27.1 3.6 42 43-84 223-265 (356)
20 PRK05380 pyrG CTP synthetase; 22.9 89 0.0019 28.8 3.2 33 52-85 11-44 (533)
21 COG0040 HisG ATP phosphoribosy 22.0 92 0.002 26.6 2.9 53 35-87 121-186 (290)
22 cd03109 DTBS Dethiobiotin synt 22.0 2.5E+02 0.0053 20.1 4.9 38 36-76 59-98 (134)
23 PRK09212 pyruvate dehydrogenas 21.8 1.9E+02 0.0041 24.3 4.7 45 40-84 192-238 (327)
24 KOG0523 Transketolase [Carbohy 21.8 1.3E+02 0.0029 28.4 4.1 35 44-78 500-536 (632)
25 PLN02790 transketolase 20.2 1.5E+02 0.0033 27.5 4.1 34 49-82 541-575 (654)
26 TIGR00337 PyrG CTP synthase. C 20.1 1.1E+02 0.0024 28.2 3.2 33 52-85 10-43 (525)
No 1
>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]
Probab=99.93 E-value=1.1e-25 Score=159.41 Aligned_cols=85 Identities=36% Similarity=0.521 Sum_probs=79.4
Q ss_pred CccEEEEecCCCCcchhHHHHH--HHhccCCEEEEeeccchHHHHHHHHHHHHhCCc--eeEEEEEeeeeEeccCCCCcc
Q 032962 21 KKNRIQVSNTKKPLFFYVNLAK--RYMQQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGRP 96 (130)
Q Consensus 21 ~~n~I~Vs~~kkP~~~Yv~lAk--~~L~g~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~ikkI~T~t~~i~~e~~g~~ 96 (130)
++|.|+|+ +||.|||| ||. +|++|.++|+|+|+|+|||+|||+||++|+||+ +.+++|.++|++++.+ +|+.
T Consensus 3 ~envV~vG--~KPvmNYV-lAvlt~fn~g~~eViiKARGraIskAVDvaeivRnrf~p~v~ik~Iki~se~~~~~-~gr~ 78 (91)
T COG1581 3 EENVVLVG--KKPVMNYV-LAVLTQFNEGADEVIIKARGRAISKAVDVAEIVRNRFIPDVQIKDIKIGTEELEGE-DGRT 78 (91)
T ss_pred CccEEEEc--CcchHHHH-HHHHHHHHcCCCEEEEEecchhhHhhHhHHHHHHHhcCCCceEEEEEecceeeecC-CCce
Confidence 45999999 99999999 999 888999999999999999999999999999999 8999999999999885 5888
Q ss_pred ceeeeEEEEEeeC
Q 032962 97 VQKAKIEILLGKS 109 (130)
Q Consensus 97 ~~v~kIeI~L~K~ 109 (130)
+++|.|||+|.|.
T Consensus 79 ~~VS~IeI~L~k~ 91 (91)
T COG1581 79 RNVSTIEIVLAKK 91 (91)
T ss_pred eeEEEEEEEEecC
Confidence 8999999999873
No 2
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=99.92 E-value=7.2e-25 Score=154.97 Aligned_cols=83 Identities=39% Similarity=0.528 Sum_probs=76.0
Q ss_pred ccEEEEecCCCCcchhHHHHH--HHhccCCEEEEeeccchHHHHHHHHHHHHhCCc--eeEEEEEeeeeEeccCCCCccc
Q 032962 22 KNRIQVSNTKKPLFFYVNLAK--RYMQQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGRPV 97 (130)
Q Consensus 22 ~n~I~Vs~~kkP~~~Yv~lAk--~~L~g~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~ikkI~T~t~~i~~e~~g~~~ 97 (130)
+|+|+|+ +||.|+|| +|. +|.+|.++|.|+|||+||++||++||+|++|++ +.+++|.++|+.+.++ .|+.+
T Consensus 1 e~~i~vG--~KPvmnYV-lavlt~fn~g~~eV~iKarG~aIskAVdvaeiik~r~~~~v~v~~I~i~te~~~~~-~G~~~ 76 (87)
T TIGR00285 1 ENVVYIG--NKPVMNYV-LAVLTQLNSGADEVIIKARGRAISRAVDVAEIVRNRFIPDIKIKKIKIGTEEIKSE-QGREV 76 (87)
T ss_pred CCEEEEc--CCcHHHHH-HHHHHHHhCCCCeEEEEEecchhhhHHHHHHHHHHhccCCceEEEEEeccEEeecC-CCcee
Confidence 4899999 99999999 777 677899999999999999999999999999988 5699999999998874 58888
Q ss_pred eeeeEEEEEee
Q 032962 98 QKAKIEILLGK 108 (130)
Q Consensus 98 ~v~kIeI~L~K 108 (130)
++|+|||+|.|
T Consensus 77 ~VStIEI~l~~ 87 (87)
T TIGR00285 77 NVSTIEIVLAK 87 (87)
T ss_pred eEEEEEEEEeC
Confidence 99999999986
No 3
>PRK04015 DNA/RNA-binding protein albA; Provisional
Probab=99.92 E-value=1.7e-24 Score=154.17 Aligned_cols=87 Identities=36% Similarity=0.460 Sum_probs=77.6
Q ss_pred CCccEEEEecCCCCcchhHHHHHHHh-ccCCEEEEeeccchHHHHHHHHHHHHhCCc--eeEEEEEeeeeEeccCCCCcc
Q 032962 20 SKKNRIQVSNTKKPLFFYVNLAKRYM-QQHNEVELSALGMAIATVVTIAEILKNNGL--AVEKKITTSTVDIREETGGRP 96 (130)
Q Consensus 20 ~~~n~I~Vs~~kkP~~~Yv~lAk~~L-~g~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~ikkI~T~t~~i~~e~~g~~ 96 (130)
+.+|+|+|+ +||.|+||..+..+| +|.++|+|||+|+||++||++||+||+|++ +.+++|.++|+.+.++ .|+.
T Consensus 2 ~~en~i~Ig--~kpvmnYV~~~~~~l~~g~~eV~iKa~G~aIskAV~vaEilk~r~~~~v~v~~I~i~se~i~~~-~g~~ 78 (91)
T PRK04015 2 AEENVVLVG--KKPVMNYVLAVLTQFNQGAKEVVIKARGRAISKAVDVAEIVRNRFLPDVEIKEIKIGTEEVTSE-DGRE 78 (91)
T ss_pred CCCCEEEEc--CCcHHHHHHHHHHHHhCCCCeEEEEEeccccchhhhHHHHHHHhccCCeEEEEEEeccEEeecC-CCcE
Confidence 467999999 679999996666544 599999999999999999999999999988 8999999999998874 5888
Q ss_pred ceeeeEEEEEeeC
Q 032962 97 VQKAKIEILLGKS 109 (130)
Q Consensus 97 ~~v~kIeI~L~K~ 109 (130)
+++|+|||+|+|.
T Consensus 79 ~~VS~IEI~l~k~ 91 (91)
T PRK04015 79 SNVSTIEIVLEKK 91 (91)
T ss_pred EEEEEEEEEEecC
Confidence 8999999999984
No 4
>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function. The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....
Probab=99.53 E-value=4.7e-14 Score=93.55 Aligned_cols=60 Identities=40% Similarity=0.563 Sum_probs=51.6
Q ss_pred cEEEEecCCCCcchhHHHHHHHh-----ccCCEEEEeeccchHHHHHHHHHHHHhC---CceeEEEEEe
Q 032962 23 NRIQVSNTKKPLFFYVNLAKRYM-----QQHNEVELSALGMAIATVVTIAEILKNN---GLAVEKKITT 83 (130)
Q Consensus 23 n~I~Vs~~kkP~~~Yv~lAk~~L-----~g~~eV~LsAlG~AIs~AV~vAEiLkrr---~~a~ikkI~T 83 (130)
|.|+|+ .++|.++|+..+..+| .++++|.|+|+|+||++||.+||+||++ ++.++.++..
T Consensus 1 n~I~V~-~~~~~~~~v~~~~~~L~~~~~~~~~~V~l~g~G~aI~kaI~vaei~K~~~~~~~~qv~~~t~ 68 (70)
T PF01918_consen 1 NEIYVS-SNSPIKSYVKRALKLLEGRENGKNDEVVLKGRGKAISKAISVAEILKRRFGEGLYQVNKITS 68 (70)
T ss_dssp SEEEE--STS-HHHHHHHHHHHHT-TTHTTCSEEEEEEECCHHHHHHHHHHHHHHHTSTTTEEEEEEEE
T ss_pred CEEEEC-CCCCHHHHHHHHHHHHhhhhcCCCCEEEEEEEcHHHHHHHHHHHHHHHhhcCCCEEEEEEec
Confidence 689999 4579999999999988 7999999999999999999999999999 5677777654
No 5
>KOG2567 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=6.7e-11 Score=92.67 Aligned_cols=91 Identities=27% Similarity=0.321 Sum_probs=71.0
Q ss_pred ccCCccEEEEecCCCCcchhHHHHHHHhc--cCCEEEEeeccchHHHHHHHHHHHHhC--CceeEEEEEeeeeEeccC--
Q 032962 18 AASKKNRIQVSNTKKPLFFYVNLAKRYMQ--QHNEVELSALGMAIATVVTIAEILKNN--GLAVEKKITTSTVDIREE-- 91 (130)
Q Consensus 18 ~~~~~n~I~Vs~~kkP~~~Yv~lAk~~L~--g~~eV~LsAlG~AIs~AV~vAEiLkrr--~~a~ikkI~T~t~~i~~e-- 91 (130)
--++.|.++|....|- .||+.+|..+|+ .+..|++||+|+||+++|.+||||||| ||+++++|.--++.=..+
T Consensus 14 ~pp~a~emrV~~g~ki-rN~i~~A~~~L~~~~~r~VVfsg~Grai~KTVscaEilKrRipgLhQ~t~l~~~sv~d~W~p~ 92 (179)
T KOG2567|consen 14 LPPDANEMRVKSGSKI-RNLIEFATELLQKGSHRCVVFSGSGRAIVKTVSCAEILKRRIPGLHQVTRLRYTSVEDVWEPT 92 (179)
T ss_pred CCCCcceEEEccCchH-HHHHHHHHHHhhCCCeeEEEEecCCcceeeeeeHHHHHhhhCcchhhhceeeeeehhhccccc
Confidence 3478899999966655 599999999997 477799999999999999999999999 788888887544320111
Q ss_pred CCC-----ccceeeeEEEEEeeC
Q 032962 92 TGG-----RPVQKAKIEILLGKS 109 (130)
Q Consensus 92 ~~g-----~~~~v~kIeI~L~K~ 109 (130)
..| -.+++|.|-|+|.+.
T Consensus 93 ~eGl~pl~vtRhVp~l~IlLS~d 115 (179)
T KOG2567|consen 93 EEGLEPLEVTRHVPMLHILLSLD 115 (179)
T ss_pred ccCccceEEeeccceEEEEEecc
Confidence 123 245799999999884
No 6
>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B.
Probab=98.54 E-value=3.1e-07 Score=70.04 Aligned_cols=67 Identities=22% Similarity=0.383 Sum_probs=48.6
Q ss_pred ccEEEEecCCCCcchhHHHHHHHhc---cC------------------------------CEEEEeeccchHHHHHHHHH
Q 032962 22 KNRIQVSNTKKPLFFYVNLAKRYMQ---QH------------------------------NEVELSALGMAIATVVTIAE 68 (130)
Q Consensus 22 ~n~I~Vs~~kkP~~~Yv~lAk~~L~---g~------------------------------~eV~LsAlG~AIs~AV~vAE 68 (130)
++.|+|| ++-|+|.+|.=+..||. +. .+|.|+|||+||.+|+.+|.
T Consensus 3 ~~~iyVs-s~TPfmSavKRv~K~L~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~gtGkAIeKal~la~ 81 (144)
T PF12328_consen 3 PKVIYVS-SKTPFMSAVKRVRKLLDKAEKRATSSVNLAKKKKSQKKKIAQLAEGSEALKSEEVTVKGTGKAIEKALSLAL 81 (144)
T ss_dssp TTEEE---SS--HHHHHHHHHHHHHHHHHH----------------T-------------SEEEEEEEGGGHHHHHHHHH
T ss_pred CcEEEEe-cCCchHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccCccEEEEEeccHHHHHHHHHHH
Confidence 5789999 56698888766666775 11 68999999999999999999
Q ss_pred HHHhCCceeEEEEEeeeeEecc
Q 032962 69 ILKNNGLAVEKKITTSTVDIRE 90 (130)
Q Consensus 69 iLkrr~~a~ikkI~T~t~~i~~ 90 (130)
-++++. .-...|.|+|+.+-|
T Consensus 82 ~Fq~~~-~~~V~V~TgTV~vvD 102 (144)
T PF12328_consen 82 WFQRKK-GYKVEVRTGTVEVVD 102 (144)
T ss_dssp HHHHTT----EEEEEEEEEEEE
T ss_pred HHhhcC-CeEEEEEeceEEEEE
Confidence 999885 456678888876555
No 7
>PF04232 SpoVS: Stage V sporulation protein S (SpoVS); InterPro: IPR007347 In Bacillus subtilis this protein interferes with sporulation at an early stage and this inhibitory effect is overcome by SpoIIB and SpoVG. SpoVS seems to play a positive role in allowing progression beyond stage V of sporulation. Null mutations in the spoVS gene block sporulation at stage V, impairing the development of heat resistance and coat assembly [].; PDB: 2EH1_B 2EK0_B.
Probab=85.96 E-value=2.8 Score=29.73 Aligned_cols=48 Identities=25% Similarity=0.331 Sum_probs=31.5
Q ss_pred cEEEEecCCCCcchhHHHHH-HHhccCCEEEEeeccc-hHHHHHHHHHHHHh
Q 032962 23 NRIQVSNTKKPLFFYVNLAK-RYMQQHNEVELSALGM-AIATVVTIAEILKN 72 (130)
Q Consensus 23 n~I~Vs~~kkP~~~Yv~lAk-~~L~g~~eV~LsAlG~-AIs~AV~vAEiLkr 72 (130)
+.+.||+..+|. ... =|. ..+...+.|.|.|.|. |++.||...-+-+.
T Consensus 2 e~LKVSs~S~p~-~vA-gAIa~~lre~~~v~lqaiGa~AvnqAvKAIAiAR~ 51 (86)
T PF04232_consen 2 EVLKVSSKSNPN-AVA-GAIAGVLREGGKVELQAIGAGAVNQAVKAIAIARG 51 (86)
T ss_dssp -EEEE-TT--HH-HHH-HHHHHHHHHTSEEEEEE-SHHHHHHHHHHHHHHHH
T ss_pred ceEEEcCCCCHH-HHH-HHHHHHHhcCCcEEEEEECHHHHHHHHHHHHHHHH
Confidence 478999777886 222 222 5666778999999998 89999888776653
No 8
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=76.75 E-value=7.4 Score=27.52 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=33.2
Q ss_pred hccCCEEEEeeccchHHHHHHHHHHHHhCCc-eeEEEEEee
Q 032962 45 MQQHNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 84 (130)
Q Consensus 45 L~g~~eV~LsAlG~AIs~AV~vAEiLkrr~~-a~ikkI~T~ 84 (130)
++...+|.|=+.|.....|+++|+.|+.+|+ +.+-++.+-
T Consensus 6 ~~~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i 46 (124)
T PF02780_consen 6 LREGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTI 46 (124)
T ss_dssp EESSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred EeCCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEE
Confidence 3456789999999999999999999999987 666666553
No 9
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=56.84 E-value=18 Score=30.16 Aligned_cols=44 Identities=23% Similarity=0.272 Sum_probs=31.1
Q ss_pred CccEEEEecCCCCcchhHHHHHHHhccCCEEEEeeccchHHHHHHHHHHHH
Q 032962 21 KKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTIAEILK 71 (130)
Q Consensus 21 ~~n~I~Vs~~kkP~~~Yv~lAk~~L~g~~eV~LsAlG~AIs~AV~vAEiLk 71 (130)
.-|+|+|+.-..- -=.-||++|++-.++|+|+|+-++ .++|...
T Consensus 4 tgnTiLITGG~sG--IGl~lak~f~elgN~VIi~gR~e~-----~L~e~~~ 47 (245)
T COG3967 4 TGNTILITGGASG--IGLALAKRFLELGNTVIICGRNEE-----RLAEAKA 47 (245)
T ss_pred cCcEEEEeCCcch--hhHHHHHHHHHhCCEEEEecCcHH-----HHHHHHh
Confidence 3479999844422 235599999999999999998653 4555543
No 10
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=54.96 E-value=15 Score=31.71 Aligned_cols=56 Identities=21% Similarity=0.392 Sum_probs=39.7
Q ss_pred CCccEEEEecCCCCcchhHH-----HHH-HHhccCCEEEEeeccchHHHHHHHHHHHHhCCc
Q 032962 20 SKKNRIQVSNTKKPLFFYVN-----LAK-RYMQQHNEVELSALGMAIATVVTIAEILKNNGL 75 (130)
Q Consensus 20 ~~~n~I~Vs~~kkP~~~Yv~-----lAk-~~L~g~~eV~LsAlG~AIs~AV~vAEiLkrr~~ 75 (130)
..+--+|.+..+-|...|-. +.| ..|+....+.|=|.|--...|+.+|++|+.+|+
T Consensus 158 ~GP~Y~Rl~R~~~p~~~~~~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GI 219 (312)
T COG3958 158 KGPVYMRLGRGKVPVVVDEGGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGI 219 (312)
T ss_pred CCCEEEEecCCCCCceecCCCceEeccceeEeecCCceEEEecCcchHHHHHHHHHHHhcCC
Confidence 33444555543434333332 444 456777889999999999999999999999987
No 11
>COG2359 SpoVS Stage V sporulation protein SpoVS [Function unknown]
Probab=50.80 E-value=64 Score=22.92 Aligned_cols=47 Identities=23% Similarity=0.337 Sum_probs=35.9
Q ss_pred EEEEecCCCCcchhHHHHH-HHhccCCEEEEeeccc-hHHHHHHHHHHHHh
Q 032962 24 RIQVSNTKKPLFFYVNLAK-RYMQQHNEVELSALGM-AIATVVTIAEILKN 72 (130)
Q Consensus 24 ~I~Vs~~kkP~~~Yv~lAk-~~L~g~~eV~LsAlG~-AIs~AV~vAEiLkr 72 (130)
.+.||+...|. -|-=|. -.|+..+.++|.|.|. |++-||..--|-+.
T Consensus 3 vLKVsa~S~Pn--sVAGAlAgvlr~~g~aEiQAiGagAvNQaVKAiAiaRg 51 (87)
T COG2359 3 VLKVSAKSNPN--SVAGALAGVLRERGKAEIQAIGAGAVNQAVKAIAIARG 51 (87)
T ss_pred eEEeccCCCcc--hHHHHHHHHHHhcCceeeeeechHHHHHHHHHHHHHhh
Confidence 56788777785 453444 6788899999999998 99999987766543
No 12
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=42.59 E-value=29 Score=31.96 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=27.3
Q ss_pred EEeeccchHHHHHHHHHHHHhCCc-eeEEEEEeee
Q 032962 52 ELSALGMAIATVVTIAEILKNNGL-AVEKKITTST 85 (130)
Q Consensus 52 ~LsAlG~AIs~AV~vAEiLkrr~~-a~ikkI~T~t 85 (130)
++|+||+-|..| .++-+||+||+ +++.||+-..
T Consensus 10 VvSslGKGi~aa-Slg~lLk~rG~~Vt~~KlDPYl 43 (533)
T COG0504 10 VVSSLGKGITAA-SLGRLLKARGLKVTIQKLDPYL 43 (533)
T ss_pred eecccccHHHHH-HHHHHHHHCCceEEEEecccce
Confidence 579999999754 78999999999 8888887543
No 13
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=35.97 E-value=62 Score=21.58 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=26.9
Q ss_pred CEEEEeeccchHHHHHHHHHHHHhCCceeE
Q 032962 49 NEVELSALGMAIATVVTIAEILKNNGLAVE 78 (130)
Q Consensus 49 ~eV~LsAlG~AIs~AV~vAEiLkrr~~a~i 78 (130)
--+++||+|.-+.+--.+|+.|..+|++.+
T Consensus 18 ~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~ 47 (79)
T PF12146_consen 18 VVVIVHGFGEHSGRYAHLAEFLAEQGYAVF 47 (79)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHhCCCEEE
Confidence 348899999999999999999999998765
No 14
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=35.75 E-value=36 Score=29.57 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=41.2
Q ss_pred HHHHH-HHhccCCEEEEeeccchHHHHHHHHHHHHhCCc-eeEEEEEeeee
Q 032962 38 VNLAK-RYMQQHNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTSTV 86 (130)
Q Consensus 38 v~lAk-~~L~g~~eV~LsAlG~AIs~AV~vAEiLkrr~~-a~ikkI~T~t~ 86 (130)
+-|.| .+.+..+.|.|=+-|.....|+..||.|..+|+ +.+.+.+|-.-
T Consensus 189 iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRTl~P 239 (324)
T COG0022 189 IPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRTLSP 239 (324)
T ss_pred ccccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEeccccCc
Confidence 56667 556678889999999999999999999999998 78888777554
No 15
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=34.52 E-value=48 Score=27.91 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=27.2
Q ss_pred EEeeccchHHHHHHHHHHHHhCCc-eeEEEEEeee
Q 032962 52 ELSALGMAIATVVTIAEILKNNGL-AVEKKITTST 85 (130)
Q Consensus 52 ~LsAlG~AIs~AV~vAEiLkrr~~-a~ikkI~T~t 85 (130)
++|+||+-|..| .++-+|++||+ ++..||+-..
T Consensus 9 v~s~lgkgi~~a-s~g~ll~~~g~~v~~~K~DpYl 42 (255)
T cd03113 9 VVSSLGKGITAA-SLGRLLKARGLKVTAQKLDPYL 42 (255)
T ss_pred cccCcchHHHHH-HHHHHHHHCCCeEEEEeecccc
Confidence 579999998755 68899999999 7888887643
No 16
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=31.73 E-value=80 Score=26.66 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=34.2
Q ss_pred HHH-HHhccCCEEEEeeccchHHHHHHHHHHHHhCCc-eeEEEEEe
Q 032962 40 LAK-RYMQQHNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITT 83 (130)
Q Consensus 40 lAk-~~L~g~~eV~LsAlG~AIs~AV~vAEiLkrr~~-a~ikkI~T 83 (130)
+.+ ..++..+.|.|=|.|.....|..+|+.|+.+|+ +.+-+..+
T Consensus 192 ~Gk~~v~~~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 237 (327)
T CHL00144 192 LEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLIS 237 (327)
T ss_pred CCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 344 345556789999999999999999999999986 55555444
No 17
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=28.80 E-value=82 Score=28.17 Aligned_cols=46 Identities=20% Similarity=0.334 Sum_probs=37.2
Q ss_pred HHHH-HHhccCCEEEEeeccchHHHHHHHHHHHHhCCc-eeEEEEEee
Q 032962 39 NLAK-RYMQQHNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 84 (130)
Q Consensus 39 ~lAk-~~L~g~~eV~LsAlG~AIs~AV~vAEiLkrr~~-a~ikkI~T~ 84 (130)
.+.+ +.++....|.|=+.|.....|..+|+.|+.+|+ +.+-+.+|-
T Consensus 330 ~~Gka~v~r~G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~tl 377 (464)
T PRK11892 330 PIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRTI 377 (464)
T ss_pred cCceEEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 3555 456667789999999999999999999999987 666666554
No 18
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=28.01 E-value=55 Score=27.85 Aligned_cols=33 Identities=30% Similarity=0.424 Sum_probs=25.2
Q ss_pred EEeeccchHHHHHHHHHHHHhCCc-eeEEEEEeee
Q 032962 52 ELSALGMAIATVVTIAEILKNNGL-AVEKKITTST 85 (130)
Q Consensus 52 ~LsAlG~AIs~AV~vAEiLkrr~~-a~ikkI~T~t 85 (130)
++|++|+-|..| .++-+||.+|+ ++..||+-..
T Consensus 10 V~SglGKGi~aa-Sig~lLk~~G~~V~~~K~DPYl 43 (276)
T PF06418_consen 10 VVSGLGKGITAA-SIGRLLKSRGYKVTMIKIDPYL 43 (276)
T ss_dssp SSSSSSHHHHHH-HHHHHHHCTT--EEEEEEE-SS
T ss_pred ccccccHHHHHH-HHHHHHHhCCeeeeeeeecccc
Confidence 368999988654 78999999999 8888988643
No 19
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=27.88 E-value=78 Score=27.12 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=33.4
Q ss_pred HHhccCCEEEEeeccchHHHHHHHHHHHHhCCc-eeEEEEEee
Q 032962 43 RYMQQHNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 84 (130)
Q Consensus 43 ~~L~g~~eV~LsAlG~AIs~AV~vAEiLkrr~~-a~ikkI~T~ 84 (130)
..++..++|.|=|.|.....|.++|+.|+.+|+ +.+-+..+-
T Consensus 223 ~v~r~G~dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId~~~i 265 (356)
T PLN02683 223 KIEREGKDVTIVAFSKMVGYALKAAEILAKEGISAEVINLRSI 265 (356)
T ss_pred EEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 345556789999999999999999999999886 555555543
No 20
>PRK05380 pyrG CTP synthetase; Validated
Probab=22.87 E-value=89 Score=28.83 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=27.2
Q ss_pred EEeeccchHHHHHHHHHHHHhCCc-eeEEEEEeee
Q 032962 52 ELSALGMAIATVVTIAEILKNNGL-AVEKKITTST 85 (130)
Q Consensus 52 ~LsAlG~AIs~AV~vAEiLkrr~~-a~ikkI~T~t 85 (130)
++|+||+-|..| .++-+||.||+ ++..||+-..
T Consensus 11 v~S~lGKGi~~a-s~g~ll~~~g~~v~~~K~DpYl 44 (533)
T PRK05380 11 VVSSLGKGITAA-SLGRLLKARGLKVTIQKLDPYI 44 (533)
T ss_pred cccCcchHHHHH-HHHHHHHhCCCceEEEeecccc
Confidence 689999998654 78999999999 8888887643
No 21
>COG0040 HisG ATP phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=22.04 E-value=92 Score=26.57 Aligned_cols=53 Identities=32% Similarity=0.433 Sum_probs=41.3
Q ss_pred chhHHHHHHHhccCCE----EEE---------eeccchHHHHHHHHHHHHhCCceeEEEEEeeeeE
Q 032962 35 FFYVNLAKRYMQQHNE----VEL---------SALGMAIATVVTIAEILKNNGLAVEKKITTSTVD 87 (130)
Q Consensus 35 ~~Yv~lAk~~L~g~~e----V~L---------sAlG~AIs~AV~vAEiLkrr~~a~ikkI~T~t~~ 87 (130)
.-|.+++++|++.++. |.| -|+.+||-.-|..-.-||-+||..+..|-.++.-
T Consensus 121 TkYp~l~~~yf~~~g~~~~Ii~l~GsvE~aP~~GlADaIvDivsTG~TLkaNgL~~id~i~~ssa~ 186 (290)
T COG0040 121 TKYPNLARKYFAEKGIDVEIIKLSGSVELAPALGLADAIVDIVSTGTTLKANGLKEIEVIYDSSAR 186 (290)
T ss_pred EccHHHHHHHHHHcCceEEEEEccCcEeeccccCccceEEEeecCCHhHHHCCCEEEEEEEeeEEE
Confidence 4699999999984332 332 3567899999999999999999888888777764
No 22
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=22.03 E-value=2.5e+02 Score=20.12 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=29.0
Q ss_pred hhHHHHHHHhccCCEEEEe--eccchHHHHHHHHHHHHhCCce
Q 032962 36 FYVNLAKRYMQQHNEVELS--ALGMAIATVVTIAEILKNNGLA 76 (130)
Q Consensus 36 ~Yv~lAk~~L~g~~eV~Ls--AlG~AIs~AV~vAEiLkrr~~a 76 (130)
++.++++.+ +.+-+.+. -+| +|+.+....+.++.+|+.
T Consensus 59 ~~~d~~~~~--~~~vllV~~~~~g-~i~~a~~~~~~l~~~g~~ 98 (134)
T cd03109 59 TNADVAKEL--NLPAILVTSAGLG-SINHAFLTIEAARIKGII 98 (134)
T ss_pred CHHHHHHHh--CCCEEEEEcCCCC-cHhHHHHHHHHHHhcCCc
Confidence 467788776 45665555 466 999999999999999874
No 23
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=21.78 E-value=1.9e+02 Score=24.35 Aligned_cols=45 Identities=16% Similarity=0.364 Sum_probs=35.5
Q ss_pred HHH-HHhccCCEEEEeeccchHHHHHHHHHHHHhCCc-eeEEEEEee
Q 032962 40 LAK-RYMQQHNEVELSALGMAIATVVTIAEILKNNGL-AVEKKITTS 84 (130)
Q Consensus 40 lAk-~~L~g~~eV~LsAlG~AIs~AV~vAEiLkrr~~-a~ikkI~T~ 84 (130)
+.+ ..++...++.|=+.|.....|..+|+.|+.+|+ +.+-++.+-
T Consensus 192 ~Gk~~vl~~G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~l 238 (327)
T PRK09212 192 IGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRTL 238 (327)
T ss_pred CCeeEEEEeCCCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 444 345566789999999999999999999999886 566665554
No 24
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=21.78 E-value=1.3e+02 Score=28.39 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=29.1
Q ss_pred Hhc-cCCEEEEeeccchHHHHHHHHHHHHhCCc-eeE
Q 032962 44 YMQ-QHNEVELSALGMAIATVVTIAEILKNNGL-AVE 78 (130)
Q Consensus 44 ~L~-g~~eV~LsAlG~AIs~AV~vAEiLkrr~~-a~i 78 (130)
.|+ +.++|.|=|-|-+...|+.+||.|..+|+ ++|
T Consensus 500 vl~~~~~dV~LiG~Gs~v~~cl~AA~~L~~~gi~vrV 536 (632)
T KOG0523|consen 500 VLQEVEPDVILIGTGSEVQECLEAAELLSEDGIKVRV 536 (632)
T ss_pred EEecCCCCEEEEeccHHHHHHHHHHHHHHhcCceEEE
Confidence 344 34589999999999999999999999986 444
No 25
>PLN02790 transketolase
Probab=20.25 E-value=1.5e+02 Score=27.48 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=28.5
Q ss_pred CEEEEeeccchHHHHHHHHHHHHhCCc-eeEEEEE
Q 032962 49 NEVELSALGMAIATVVTIAEILKNNGL-AVEKKIT 82 (130)
Q Consensus 49 ~eV~LsAlG~AIs~AV~vAEiLkrr~~-a~ikkI~ 82 (130)
..|.|=|.|.-...|+.+|+.|+.+|+ +.+-...
T Consensus 541 ~dv~iia~G~~v~~Al~Aa~~L~~~gi~~~VV~~~ 575 (654)
T PLN02790 541 PDLILIGTGSELEIAAKAAKELRKEGKKVRVVSMV 575 (654)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHHhcCCceEEEecC
Confidence 579999999999999999999999986 4444433
No 26
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=20.05 E-value=1.1e+02 Score=28.17 Aligned_cols=33 Identities=33% Similarity=0.459 Sum_probs=27.3
Q ss_pred EEeeccchHHHHHHHHHHHHhCCc-eeEEEEEeee
Q 032962 52 ELSALGMAIATVVTIAEILKNNGL-AVEKKITTST 85 (130)
Q Consensus 52 ~LsAlG~AIs~AV~vAEiLkrr~~-a~ikkI~T~t 85 (130)
++|+||+-|..| .++-+||.+|+ ++..||+-..
T Consensus 10 v~s~lgkgi~~a-s~g~ll~~~g~~v~~~K~DpYl 43 (525)
T TIGR00337 10 VVSSLGKGITAA-SIGRLLKARGLKVTIIKIDPYI 43 (525)
T ss_pred cccCcchHHHHH-HHHHHHHhCCCceEEEeecccc
Confidence 689999988654 78899999998 8888887643
Done!