BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032967
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPE--TTQHIRYTPTFHFYRD 107
+ N+ A WCG C QI P + +LS N+P L F+ D+DE + + I+ TPTF F RD
Sbjct: 49 VLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRD 108
Query: 108 GERVDEMFGAGEERLHDRL 126
G++VD++ GA + LH ++
Sbjct: 109 GQQVDKLVGANKPELHKKI 127
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPE--TTQHIRYTPTFHFYRD 107
+ N+ A WCG QI P + +LS N+P L F+ D+DE + + I+ TPTF F RD
Sbjct: 49 VLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRD 108
Query: 108 GERVDEMFGAGEERLHDRL 126
G++VD++ GA + LH ++
Sbjct: 109 GQQVDKLVGANKPELHKKI 127
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRDG 108
+I++ ASWCG C I P F + + FP F+ D+DE + + ++ PTF F +DG
Sbjct: 32 IIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEAMPTFLFIKDG 91
Query: 109 ERVDEMFGAGEERLHDRL 126
E+VD + G ++ +H ++
Sbjct: 92 EKVDSVVGGRKDDIHTKI 109
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRD 107
V+++ A+WCG C I P F LS + + F+ D+D+C + ++ TPTF F++
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCTPTFQFFKK 82
Query: 108 GERVDEMFGAGEERLHDRL 126
G++V E GA +E+L +
Sbjct: 83 GQKVGEFSGANKEKLEATI 101
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 45 SSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQH--IRYTPTF 102
++K VI++ ASWCG C + P F L+ FP F+ D+DE + + PTF
Sbjct: 32 TAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTF 91
Query: 103 HFYRDGERVDEMFGAGEERLHDRLWLHS 130
F ++G+ D + GA +E L ++ LH+
Sbjct: 92 LFMKEGDVKDRVVGAIKEELTAKVGLHA 119
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETT--QHIRYTPTFHFYRD 107
V+++ A+WCG C I P F LS + + F+ D+D+C + ++ PTF F++
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESEVKSMPTFQFFKK 82
Query: 108 GERVDEMFGAGEERLHDRL 126
G++V E GA +E+L +
Sbjct: 83 GQKVGEFSGANKEKLEATI 101
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 40 LLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIR 97
+ + K + +I++ ASWCG C I P F + + FP F+ D+DE E + ++
Sbjct: 29 MTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVE 88
Query: 98 YTPTFHFYRDGERVDEMFGAGEERLHDRLWLH 129
PTF F +DG D++ GA ++ L + + H
Sbjct: 89 AMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 120
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRD 107
V+++ A+WCG C I P F LS + + F+ D+D+C + ++ PTF F++
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFFKK 82
Query: 108 GERVDEMFGAGEERLHDRL 126
G++V E GA +E+L +
Sbjct: 83 GQKVGEFSGANKEKLEATI 101
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 65.5 bits (158), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRD 107
V+++ A+WCG C I P F LS + + F+ D+D+C + ++ PTF F++
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASEXEVKCMPTFQFFKK 82
Query: 108 GERVDEMFGAGEERLHDRL 126
G++V E GA +E+L +
Sbjct: 83 GQKVGEFSGANKEKLEATI 101
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPET--TQHIRYTPTFHFYRD 107
AV+ + CG C +I PAF +SN +P+ F+ D+ +C T T +I TPTF F+R+
Sbjct: 24 AVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQFFRN 83
Query: 108 GERVDEMFGAGEERLHDRLWLH 129
R+D+ GA L +++ H
Sbjct: 84 KVRIDQYQGADAVGLEEKIKQH 105
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRD 107
V+++ A+WCG C I P F LS + + F+ D+D+C + ++ PTF F++
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKK 82
Query: 108 GERVDEMFGAGEERLHDRL 126
G++V E GA +E+L +
Sbjct: 83 GQKVGEFSGANKEKLEATI 101
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRDG 108
V+++ A+WCG C I P F LS + + F+ D+D+ + ++ TPTF F++ G
Sbjct: 24 VVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVASEAEVKATPTFQFFKKG 83
Query: 109 ERVDEMFGAGEERLHDRL 126
++V E GA +E+L +
Sbjct: 84 QKVGEFSGANKEKLEATI 101
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 44 KSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPT 101
K S+ V+++ ASWC C I P F +L+ FP ++F+ D+DE + ++ PT
Sbjct: 23 KGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPT 82
Query: 102 FHFYRDGERVDEMFGAGEERLHDRLWLHS 130
F F +DG+ VD+ GA ++ L + H+
Sbjct: 83 FIFLKDGKLVDKTVGADKDGLPTLVAKHA 111
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 18 MDLNNHHGHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP 77
+++ + G + + + + L + SK V+++ ASWCG C I P F L+ P
Sbjct: 9 LEMASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP 68
Query: 78 KLSFIYADIDECPETTQ--HIRYTPTFHFYRDGERVDEMFGAGEERLHDRLWLH 129
+ F+ D DE I+ PTF F ++G+ +D++ GA ++ L + H
Sbjct: 69 NVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 122
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 24 HGHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSF 81
G ++ SS K Q+ VI++ A+WCG C I P F K+S+ K+ F
Sbjct: 14 RGSVQVISSYDQFK----QVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGF 69
Query: 82 IYADIDECPETTQH--IRYTPTFHFYRDGERVDEMFGAGEERLHDRLWLHS 130
D+DE + Q IR PTF F+++G+++D + GA +L + HS
Sbjct: 70 YKVDVDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQAAITQHS 120
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETT--QHIRYTPTFHFYRD 107
++++ A WCG C +I P + + S + K+ FI D+DE E T ++I PTF Y++
Sbjct: 29 VIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKN 88
Query: 108 GERVDEMFGAGEERLHDRL 126
G VD + GA + L +
Sbjct: 89 GSSVDTLLGANDSALKQLI 107
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 45 SSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQH--IRYTPTF 102
++K VI++ ASWCG + P F L+ FP F+ D+DE + + PTF
Sbjct: 35 TAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTF 94
Query: 103 HFYRDGERVDEMFGAGEERLHDRLWLHS 130
F ++G+ D + GA +E L ++ LH+
Sbjct: 95 LFMKEGDVKDRVVGAIKEELTAKVGLHA 122
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRD 107
VI++ A+WCG C I P +LS + + F+ D+DEC + Q I PTF F ++
Sbjct: 23 VVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDIAQDNQIACMPTFLFMKN 82
Query: 108 GERVDEMFGAGEERL 122
G+++D + GA ++L
Sbjct: 83 GQKLDSLSGANYDKL 97
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRD 107
V+++ A+WCG C I P F LS + + F+ D+++C + ++ PTF F++
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVNDCQDVASECEVKCMPTFQFFKK 82
Query: 108 GERVDEMFGAGEERLHDRL 126
G++V E GA +E+L +
Sbjct: 83 GQKVGEFSGANKEKLEATI 101
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRDG 108
V+++ A+WCG I P F LS + + F+ D+D+ + ++ TPTF F++ G
Sbjct: 24 VVDFSATWCGPAKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVASEAEVKATPTFQFFKKG 83
Query: 109 ERVDEMFGAGEERLHDRL 126
++V E GA +E+L +
Sbjct: 84 QKVGEFSGANKEKLEATI 101
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRD 107
V+++ A+WCG I P F LS + + F+ D+D+C + ++ PTF F++
Sbjct: 34 VVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFFKK 93
Query: 108 GERVDEMFGAGEERLHDRL 126
G++V E GA +E+L +
Sbjct: 94 GQKVGEFSGANKEKLEATI 112
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRD 107
V+++ A+WCG I P F LS + + F+ D+D+C + ++ PTF F++
Sbjct: 23 VVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKRMPTFQFFKK 82
Query: 108 GERVDEMFGAGEERLH 123
G++V E GA +E+L
Sbjct: 83 GQKVGEFSGANKEKLE 98
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 44 KSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIRYTP 100
K+S V+++ A+WCG C I P +LS F + + D+DEC + +I P
Sbjct: 22 KASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMP 81
Query: 101 TFHFYRDGERVDEMFGAGEERLHDRL 126
TF F ++G +V+E GA +RL D +
Sbjct: 82 TFVFLKNGVKVEEFAGANAKRLEDVI 107
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 44 KSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIRYTP 100
K+S V+++ A+WCG C I P +LS F + + D+DEC + +I P
Sbjct: 17 KASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMP 76
Query: 101 TFHFYRDGERVDEMFGAGEERLHDRL 126
TF F ++G +V+E GA +RL D +
Sbjct: 77 TFVFLKNGVKVEEFAGANAKRLEDVI 102
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQHIRYT--PTFHFYRDG 108
V+++ A WCG C I P L+ P++ F D+D+ E T PTF F +DG
Sbjct: 23 VVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFIKDG 82
Query: 109 ERVDEMFGAGEERLHDRLWLH 129
+ VD GA E +L + + H
Sbjct: 83 KEVDRFSGANETKLRETITRH 103
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETT--QHIRYTPTFHFYRD 107
V+++ A+WCG I P F LS + + F+ D+D+ + ++ PTF F++
Sbjct: 23 VVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDSQDVASESEVKSMPTFQFFKK 82
Query: 108 GERVDEMFGAGEERLHDRL 126
G++V E GA +E+L +
Sbjct: 83 GQKVGEFSGANKEKLEATI 101
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 49 PAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFI--YADIDECPETTQHIRYTPTFHFY 105
P V+++ A+WCG C I P F LSN++ K+ F+ D I PTFH Y
Sbjct: 26 PIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVY 85
Query: 106 RDGERVDEMFGAGEERLHDRLWLHS 130
+DG + D++ GA +++L + H+
Sbjct: 86 KDGVKADDLVGASQDKLKALVAKHA 110
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRD 107
V+++ A+W G I P F LS + + F+ D+D+C + ++ PTF F++
Sbjct: 23 VVVDFSATWSGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKK 82
Query: 108 GERVDEMFGAGEERLHDRL 126
G++V E GA +E+L +
Sbjct: 83 GQKVGEFSGANKEKLEATI 101
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQHIRYT--PTFHFYRDG 108
VI++ A+WCG C + P KL +P + F+ D+DE P+ + T PTF +DG
Sbjct: 34 VIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKDG 93
Query: 109 ERVDEMFGAGEERLH 123
+ + ++ GA L
Sbjct: 94 QLIGKIIGANPTALE 108
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRD 107
V+++ A+WCG C I P F +LS + + F+ D+D+ ET + +I PTF ++
Sbjct: 27 VVVDFFATWCGPCKTIAPLFKELSEKYDAI-FVKVDVDKLEETARKYNISAMPTFIAIKN 85
Query: 108 GERVDEMFGAGEERLHDRL 126
GE+V ++ GA ++ D +
Sbjct: 86 GEKVGDVVGASIAKVEDMI 104
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 49 PAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFI--YADIDECPETTQHIRYTPTFHFY 105
P V+ + A+WCG C I P F LSN++ K+ F+ D I PTFH Y
Sbjct: 26 PIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVY 85
Query: 106 RDGERVDEMFGAGEERLHDRLWLHS 130
+DG + D++ GA +++L + H+
Sbjct: 86 KDGVKADDLVGASQDKLKALVAKHA 110
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRD 107
V+++ A+WCG C I P F +LS + + F+ D+D+ ET + +I PTF ++
Sbjct: 36 VVVDFFATWCGPCKTIAPLFKELSEKYDAI-FVKVDVDKLEETARKYNISAMPTFIAIKN 94
Query: 108 GERVDEMFGAGEERLHDRL 126
GE+V ++ GA ++ D +
Sbjct: 95 GEKVGDVVGASIAKVEDMI 113
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 33 DQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECP- 90
D + K+ +L+ S++P ++++ A WCG C I P +L+ + K++ + DE P
Sbjct: 7 DSSWKEFVLE---SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG 63
Query: 91 -ETTQHIRYTPTFHFYRDGERVDEMFGA 117
T +IR PT F+++GER + + GA
Sbjct: 64 IATQYNIRSIPTVLFFKNGERKESIIGA 91
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 33 DQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECP- 90
D + K+ +L+ S++P ++++ A WCG C I P +L+ + K++ + DE P
Sbjct: 6 DSSWKEFVLE---SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG 62
Query: 91 -ETTQHIRYTPTFHFYRDGERVDEMFGA 117
T +IR PT F+++GER + + GA
Sbjct: 63 IATQYNIRSIPTVLFFKNGERKESIIGA 90
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQH--IRYTPTFHFYRD 107
AV+++ A WC C + P +L+ ++P++ F + DE P+ + PT F++D
Sbjct: 19 AVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFKD 78
Query: 108 GERVDEMFGA 117
GE VDE+ GA
Sbjct: 79 GEPVDEIIGA 88
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 40 LLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIR 97
LL++K+ + V+++ A W C Q+ +L+ P++SF+ + + PE ++ I
Sbjct: 26 LLRLKAKSL-LVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEIS 84
Query: 98 YTPTFHFYRDGERVDEMFGAGEERLHDRLWLHS 130
PTF F+++ +++D + GA L ++ H+
Sbjct: 85 SVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHA 117
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRDG 108
V+++ A+WCG C I P K S +P+ F D+DE + Q + PT +++G
Sbjct: 22 VVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNG 81
Query: 109 ERVDEMFGAGEERLHDRL 126
+ V ++ GA + +
Sbjct: 82 KEVAKVVGANPAAIKQAI 99
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRDG 108
V+++ A+WCG C I P K S +P+ F D+DE + Q + PT +++G
Sbjct: 28 VVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNG 87
Query: 109 ERVDEMFGAGEERLHDRL 126
+ V ++ GA + +
Sbjct: 88 KEVAKVVGANPAAIKQAI 105
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 26 HLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYA 84
H S +D+L K+S + ++++ A WCG C I PA ++ F K++
Sbjct: 3 HTLAVSDSSFDQDVL---KASGL-VLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKV 58
Query: 85 DIDECPETTQ--HIRYTPTFHFYRDGERVDEMFGA 117
+ID+ PET +R PT RDG+ +D+ GA
Sbjct: 59 NIDDNPETPNAYQVRSIPTLMLVRDGKVIDKKVGA 93
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 25 GHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNF-PKLSFIY 83
G LK + D +D+L K P ++++ A+WCG C QI P+ ++ + K+ +
Sbjct: 5 GTLKHVTDDSFEQDVLKNDK----PVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVK 60
Query: 84 ADIDECPETTQH--IRYTPTFHFYRDGERVDEMFGA 117
+IDE P T + PT + Y+ GE + GA
Sbjct: 61 LNIDENPGTAAKYGVMSIPTLNVYQGGEVAKTIVGA 96
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 33 DQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECP- 90
D + K+ +L+ S++P ++++ A WCG I P +L+ + K++ + DE P
Sbjct: 7 DSSWKEFVLE---SEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAPG 63
Query: 91 -ETTQHIRYTPTFHFYRDGERVDEMFGA 117
T +IR PT F+++GER + + GA
Sbjct: 64 IATQYNIRSIPTVLFFKNGERKESIIGA 91
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFI--YADIDECPETTQHIRYTPTFHFYRD 107
V+++ A+WCG C I P F LS + + F+ D + + ++ PTF F++
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDXQDVASEXEVKCMPTFQFFKK 82
Query: 108 GERVDEMFGAGEERLHDRL 126
G++V E GA +E+L +
Sbjct: 83 GQKVGEFSGANKEKLEATI 101
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 40 LLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIR 97
LL++K+ + V+++ A W C Q+ +L+ P++SF+ + + PE ++ I
Sbjct: 32 LLRLKAKSL-LVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEIS 90
Query: 98 YTPTFHFYRDGERVDEMFGAGEERLHDRLWLHS 130
PTF F+++ +++D + GA L ++ H+
Sbjct: 91 SVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHA 123
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRDG 108
V+++ A+WCG C I P K + + +F D+DE + Q + PT FY+ G
Sbjct: 30 VVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGG 89
Query: 109 ERVDEMFGAGEERLHDRL 126
+ V + GA + +
Sbjct: 90 KEVTRVVGANPAAIKQAI 107
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRDG 108
V+++ A+WCG C I P K + + +F D+DE + Q + PT FY+ G
Sbjct: 23 VVDFFATWCGPCKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGG 82
Query: 109 ERVDEMFGAGEERLHDRL 126
+ V + GA + +
Sbjct: 83 KEVTRVVGANPAAIKQAI 100
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 43 IKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQH--IRYTP 100
I +KI V+++ A WC C + P +L+N++P+++F + +E + I P
Sbjct: 20 ITKNKI-VVVDFWAEWCAPCLILAPVIEELANDYPQVAFGKLNTEESQDIAMRYGIMSLP 78
Query: 101 TFHFYRDGERVDEMFGA-GEERLHDRL 126
T F+++GE VD++ GA E + RL
Sbjct: 79 TIMFFKNGELVDQILGAVPREEIEVRL 105
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 30 ASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDE 88
A +D K+++L+ S +P ++++ A WCG C I P +++ + KL + + DE
Sbjct: 5 AVNDDTFKNVVLE---SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDE 61
Query: 89 CPETTQH--IRYTPTFHFYRDGERVDEMFGA 117
P IR PT ++ G++ + + GA
Sbjct: 62 SPNVASEYGIRSIPTIMVFKGGKKCETIIGA 92
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 28 KTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSN-NFPKLSFIYADI 86
K+A+ + SS P ++++ A+WCG C + P +++ L+ D+
Sbjct: 11 KSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDV 70
Query: 87 DECPETTQHIRYT--PTFHFYRDGERVDEMFGA 117
D PET ++ + PT ++DG+ V + GA
Sbjct: 71 DTNPETARNFQVVSIPTLILFKDGQPVKRIVGA 103
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 28 KTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSN-NFPKLSFIYADI 86
K+A+ + SS P ++++ A+WCG C + P +++ L+ D+
Sbjct: 6 KSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDV 65
Query: 87 DECPETTQHIRYT--PTFHFYRDGERVDEMFGA 117
D PET ++ + PT ++DG+ V + GA
Sbjct: 66 DTNPETARNFQVVSIPTLILFKDGQPVKRIVGA 98
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQH--IRYTPTFHFYRD 107
V+++ A+WCG C I P F LS + + F+ D+D+ + IR PT +++
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVAPKYGIRGIPTLLLFKN 82
Query: 108 GERVDEMFGA 117
GE GA
Sbjct: 83 GEVAATKVGA 92
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIRYTPTFHFYRD 107
++++ A+WCG C I P +L+ ++ K + D+DE P T + PT ++D
Sbjct: 24 LVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 108 GERVDEMFG 116
G+ VD++ G
Sbjct: 84 GQPVDKVVG 92
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRDG 108
V+++ A+WCG I P K S +P+ F D+DE + Q + PT +++G
Sbjct: 28 VVDFYATWCGPSKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNG 87
Query: 109 ERVDEMFGAGEERLHDRL 126
+ V ++ GA + +
Sbjct: 88 KEVAKVVGANPAAIKQAI 105
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIRYTPTFHFYRD 107
++++ A+WCG C I P +L+ ++ K + D+DE P T + PT ++D
Sbjct: 23 LVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 82
Query: 108 GERVDEMFG 116
G+ VD++ G
Sbjct: 83 GQPVDKVVG 91
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRDG 108
V+++ A+WCG I P K + + +F D+DE + Q + PT FY+ G
Sbjct: 31 VVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGG 90
Query: 109 ERVDEMFGAGEERLHDRL 126
+ V + GA + +
Sbjct: 91 KEVTRVVGANPAAIKQAI 108
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIRYTPTFHFYRD 107
++++ A+WCG C I P +L+ ++ K + D+DE P T + PT ++D
Sbjct: 24 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 108 GERVDEMFG 116
G+ VD++ G
Sbjct: 84 GQPVDKVVG 92
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRDG 108
V+++ A+WCG I P K + + +F D+DE + Q + PT FY+ G
Sbjct: 23 VVDFFATWCGPSKMIAPMIEKFAEQYSDAAFYKLDVDEVSDVAQKAEVSSMPTLIFYKGG 82
Query: 109 ERVDEMFGAGEERLHDRL 126
+ V + GA + +
Sbjct: 83 KEVTRVVGANPAAIKQAI 100
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 38 DILLQIKSSKIPAVINYGASWCGVCNQILPAFCKL-SNNFPKLSFIYADIDECP--ETTQ 94
D LLQ +P VI++ A WCG C P F + + K+ F+ + + P T
Sbjct: 49 DKLLQ---DDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRF 105
Query: 95 HIRYTPTFHFYRDGERVDEMFGAGEERLHDRLWL 128
IR PT YR+G+ +D + GA + D WL
Sbjct: 106 RIRSIPTIXLYRNGKXIDXLNGAVPKAPFDN-WL 138
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 7/99 (7%)
Query: 32 SDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECP 90
+D+N + +L KS K P ++++ A WCG C I P +L+ + K+ + ++DE P
Sbjct: 7 TDENFEQEVL--KSDK-PVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENP 63
Query: 91 ETTQH--IRYTPTFHFYRDGERVDEMFGAG-EERLHDRL 126
T IR PT +++G+ VD + GA +E L +R+
Sbjct: 64 NTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERI 102
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 49 PAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFY 105
P ++++ A+WCG C + P + + K++ ++DE PETT I PT +
Sbjct: 19 PVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILF 78
Query: 106 RDGERVDEMFG-AGEERLHDRL 126
+ GE V ++ G +E+L +L
Sbjct: 79 KGGEPVKQLIGYQPKEQLEAQL 100
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 49 PAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFY 105
P ++++ A+WCG C + P + + K++ ++DE PETT I PT +
Sbjct: 19 PVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILF 78
Query: 106 RDGERVDEMFG-AGEERLHDRL 126
+ GE V ++ G +E+L +L
Sbjct: 79 KGGEPVKQLIGYQPKEQLEAQL 100
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIRYTPTFHFYRD 107
++++ A+WCG I P +L+ ++ K + D+DE P T + PT ++D
Sbjct: 24 LVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 108 GERVDEMFG 116
G+ VD++ G
Sbjct: 84 GQPVDKVVG 92
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 28 KTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPK-LSFIYADI 86
K+A+ + SS P ++++ A+WCG + P +++ L+ D+
Sbjct: 8 KSATIKVTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDV 67
Query: 87 DECPETTQHIRYT--PTFHFYRDGERVDEMFGA 117
D PET ++ + PT ++DG+ V + GA
Sbjct: 68 DTNPETARNFQVVSIPTLILFKDGQPVKRIVGA 100
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQHIRY--TPTFHFYR 106
++++ A WC C I P +++ + KL D+DE P+T R PT ++
Sbjct: 22 VLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSIPTVILFK 81
Query: 107 DGERVDEMFGAGEER 121
DG+ V+ + GA +R
Sbjct: 82 DGQPVEVLVGAQPKR 96
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQHIRY--TPTFHFYR 106
++++ A WC C I P +++ + KL D+DE P+T R PT ++
Sbjct: 21 VLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPKTAXRYRVXSIPTVILFK 80
Query: 107 DGERVDEMFGAGEER 121
DG+ V+ + GA +R
Sbjct: 81 DGQPVEVLVGAQPKR 95
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 49 PAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQH---IRYTPTFHFY 105
P V++ WCG C + P + KL+ + + F+ D ++ +T IR PTF
Sbjct: 39 PVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKIL 98
Query: 106 RDGERVDEMFGAGEERLHDRL 126
++ V E+ GA ++L + +
Sbjct: 99 KENSVVGEVTGAKYDKLLEAI 119
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 49 PAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQH---IRYTPTFHFY 105
P V++ WCG C + P + KL+ + + F+ D ++ +T IR PTF
Sbjct: 27 PVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKIL 86
Query: 106 RDGERVDEMFGAGEERLHDRL 126
++ V E+ GA ++L + +
Sbjct: 87 KENSVVGEVTGAKYDKLLEAI 107
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 49 PAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFY 105
P ++++ A+WCG C + P + + K++ ++DE PETT I PT +
Sbjct: 19 PVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILF 78
Query: 106 RDGERVDEMFG-AGEERLHDRL 126
+ G V ++ G +E+L +L
Sbjct: 79 KGGRPVKQLIGYQPKEQLEAQL 100
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFYRD 107
++++ A WCG C I P ++++ + KL+ +ID+ P T IR TPT +++
Sbjct: 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGTPTLLLFKN 84
Query: 108 GERVDEMFGA 117
GE GA
Sbjct: 85 GEVAATKVGA 94
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 49 PAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFY 105
P ++++ A+WCG C + P + + K++ ++DE PETT I PT +
Sbjct: 19 PVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILF 78
Query: 106 RDGERVDEMFG-AGEERLHDRL 126
+ G V ++ G +E+L +L
Sbjct: 79 KGGRPVKQLIGYQPKEQLEAQL 100
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 43 IKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQHIRY--TP 100
I S I V + A WCG C I K++ FP + F D D E R P
Sbjct: 33 IMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLP 92
Query: 101 TFHFYRDGERVDEMFGAGEERLHDRL 126
TF R G+ + + GA L +L
Sbjct: 93 TFIIARSGKMLGHVIGANPGMLRQKL 118
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 38 DILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ-- 94
D L+++ P +I + SWC C ++ P F ++++ + F Y D ++ +T
Sbjct: 8 DFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKTMAEL 67
Query: 95 HIRYTPTFHFYRDGERVDEMFGAGEERLHDRLWLHS 130
+IR P+ + DG + E+F + R W+++
Sbjct: 68 NIRTLPSLALFVDG-MIREVFSGTMNKSDLRYWINN 102
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIRYTPTFHFYRD 107
++++ A+ CG C I P +L+ ++ K + D+DE P T + PT ++D
Sbjct: 23 LVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 82
Query: 108 GERVDEMFG 116
G+ VD++ G
Sbjct: 83 GQPVDKVVG 91
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFYRD 107
++++ A WCG C I P ++++++ KL+ +ID+ P T IR PT +++
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
Query: 108 GERVDEMFGA 117
GE GA
Sbjct: 84 GEVAATKVGA 93
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFYRD 107
++++ A WCG C I P ++++ + KL+ +ID+ P T IR PT +++
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRSIPTLLLFKN 83
Query: 108 GERVDEMFGA 117
GE GA
Sbjct: 84 GEVAATKVGA 93
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFYRD 107
++++ A WCG C I P ++++ + KL+ +ID+ P T IR PT +++
Sbjct: 34 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 93
Query: 108 GERVDEMFGA 117
GE GA
Sbjct: 94 GEVAATKVGA 103
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFYRD 107
++++ A WCG C I P ++++ + KL+ +ID+ P T IR PT +++
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
Query: 108 GERVDEMFGA 117
GE GA
Sbjct: 84 GEVAATKVGA 93
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFYRD 107
++++ A WCG C I P ++++ + KL+ +ID+ P T IR PT +++
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
Query: 108 GERVDEMFGA 117
GE GA
Sbjct: 84 GEVAATKVGA 93
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFYRD 107
++++ A WCG C I P ++++ + KL+ +ID+ P T IR PT +++
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
Query: 108 GERVDEMFGA 117
GE GA
Sbjct: 84 GEVAATKVGA 93
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFYRD 107
++++ A WCG C I P ++++ + KL+ +ID+ P T IR PT +++
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
Query: 108 GERVDEMFGA 117
GE GA
Sbjct: 84 GEVAATKVGA 93
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFYRD 107
++++ A WCG C I P ++++ + KL+ +ID+ P T IR PT +++
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
Query: 108 GERVDEMFGA 117
GE GA
Sbjct: 84 GEVAATKVGA 93
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFYRD 107
++++ A WCG C I P ++++ + KL+ +ID+ P T IR PT +++
Sbjct: 24 LVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
Query: 108 GERVDEMFGA 117
GE GA
Sbjct: 84 GEVAATKVGA 93
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFYRD 107
++++ A WCG C I P ++++ + KL+ +ID+ P T IR PT +++
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
Query: 108 GERVDEMFGA 117
GE GA
Sbjct: 84 GEVAATKVGA 93
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFYRD 107
++++ A WCG C I P ++++ + KL+ +ID+ P T IR PT +++
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
Query: 108 GERVDEMFGA 117
GE GA
Sbjct: 84 GEVAATKVGA 93
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFYRD 107
++++ A WCG C I P ++++ + KL+ +ID+ P T IR PT +++
Sbjct: 24 LVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
Query: 108 GERVDEMFGA 117
GE GA
Sbjct: 84 GEVAATKVGA 93
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFYRD 107
++++ A WCG C I P ++++ + KL+ +ID+ P T IR PT +++
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
Query: 108 GERVDEMFGA 117
GE GA
Sbjct: 84 GEVAATKVGA 93
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 53 NYGASWCGVCNQILPAFCKLSNNF-PKLSFIYADIDECPETTQH--IRYTPTFHFYRDGE 109
++ A WCG C I P +L KL + D+DE ET + PT +DGE
Sbjct: 23 DFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGE 82
Query: 110 RVDEMFG 116
V+ G
Sbjct: 83 VVETSVG 89
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFYRD 107
++++ A WCG C I P +++ + KL+ +ID+ P T IR PT +++
Sbjct: 24 LVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
Query: 108 GERVDEMFGA 117
GE GA
Sbjct: 84 GEVAATKVGA 93
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFYRD 107
++++ A WCG C I P +++ + KL+ +ID+ P T IR PT +++
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
Query: 108 GERVDEMFGA 117
GE GA
Sbjct: 84 GEVAATKVGA 93
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 49 PAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIY-ADIDECPETTQH--IRYTPTFHFY 105
PA++++ A WCG C + P +LS + +IY ++D+ PE + I+ PT F
Sbjct: 53 PAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWFV 112
Query: 106 -RDGERVDEMFGAGEERL 122
GE M +E+L
Sbjct: 113 PMKGEPQVNMGALSKEQL 130
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFYRD 107
++++ A WCG C I P ++++ + KL+ +ID+ P T IR PT +++
Sbjct: 24 LVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
Query: 108 GERVDEMFGA 117
GE GA
Sbjct: 84 GEVAATKVGA 93
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFYRD 107
++++ A WCG C I P ++++ + KL+ +ID+ P T IR PT +++
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
Query: 108 GERVDEMFGA 117
GE GA
Sbjct: 84 GEVAATKVGA 93
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 49 PAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQH---IRYTPTFHFY 105
P V++ WCG + P + KL+ + + F+ D ++ +T IR PTF
Sbjct: 26 PVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKIL 85
Query: 106 RDGERVDEMFGAGEERLHDRL 126
++ V E+ GA ++L + +
Sbjct: 86 KENSVVGEVTGAKYDKLLEAI 106
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 49 PAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIY-ADIDECPETTQH--IRYTPTFHFY 105
PA++++ A WCG C + P +LS + +IY ++D+ PE + I+ PT F
Sbjct: 53 PAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQGIPTIWFV 112
Query: 106 -RDGERVDEMFGAGEERL 122
GE M +E+L
Sbjct: 113 PMKGEPQVNMGALSKEQL 130
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFYRD 107
++++ A WCG C I P ++++ + KL+ +ID+ P T IR PT +++
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
Query: 108 GERVDEMFGA 117
G+ GA
Sbjct: 84 GDVAATKVGA 93
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFYRD 107
++++ A WCG C I P ++++ + KL+ +ID+ P T IR PT +++
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
Query: 108 GERVDEMFGA 117
GE GA
Sbjct: 84 GEVAACKVGA 93
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFYRD 107
++++ A WCG C + P +L+ + +L + ++DE P +R PT +R
Sbjct: 54 LVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRR 113
Query: 108 GERVDEMFGAGEER-LHDRL 126
G V GA R L +RL
Sbjct: 114 GAPVATWVGASPRRVLEERL 133
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 34 QNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKL-SNNFPKLSFIYADIDECPET 92
Q+ D ++ +S+ P V+++ A WCG C + P K+ + K+ DID+ T
Sbjct: 18 QDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDD--HT 75
Query: 93 TQHIRY----TPTFHFYRDGERVDEMFGAGEE 120
I Y PT ++G+ VD+ G +E
Sbjct: 76 DLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDE 107
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETT-QHI-RYTPTFHFYRD 107
++++ A WCG C I P ++++ + KL+ +ID+ P T ++I R PT +++
Sbjct: 24 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYIERGIPTLLLFKN 83
Query: 108 GERVDEMFGA 117
GE GA
Sbjct: 84 GEVAATKVGA 93
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFYRD 107
++++ A WCG I P ++++ + KL+ +ID+ P T IR PT +++
Sbjct: 44 LVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 103
Query: 108 GERVDEMFGA 117
GE GA
Sbjct: 104 GEVAATKVGA 113
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFYRD 107
++++ A WCG I P ++++ + KL+ +ID+ P T IR PT +++
Sbjct: 24 LVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
Query: 108 GERVDEMFGA 117
GE GA
Sbjct: 84 GEVAATKVGA 93
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQH--IRYTPTFHFYRD 107
++++ A WCG C I ++++ + KL+ +ID+ P T IR PT +++
Sbjct: 24 LVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 83
Query: 108 GERVDEMFGA 117
GE GA
Sbjct: 84 GEVAATKVGA 93
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 52 INYGASWCGVCNQILPAFCKLSNN-FPKLSFI-YADIDECPE----TTQHIRYTPTFHFY 105
I + A WCG C + P + +LS FP L+ + A++D E + +R PT +
Sbjct: 28 IKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLF 87
Query: 106 RDGERVDEMFGA 117
R G++V E G
Sbjct: 88 RGGKKVSEHSGG 99
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETT-QH-IRYTPTFHFY 105
VI +GA WC CN+I F K N+ ++ + D+D P+ QH I+ PTF FY
Sbjct: 44 VIKFGAVWCKPCNKIKEYF-KNQLNYYYVTLVDIDVDIHPKLNDQHNIKALPTFEFY 99
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 52 INYGASWCGVCNQILPAFCKLSNN-FPKLSFI-YADIDECPE----TTQHIRYTPTFHFY 105
I + A WCG C + P + +LS FP L+ + A++D E + +R PT +
Sbjct: 26 IKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLF 85
Query: 106 RDGERVDEMFGA 117
R G++V E G
Sbjct: 86 RGGKKVSEHSGG 97
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 52 INYGASWCGVCNQILPAFCKLSNN-FPKLSFI-YADIDECPE----TTQHIRYTPTFHFY 105
I + A WCG C + P + +LS FP L+ + A++D E + +R PT +
Sbjct: 21 IKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLF 80
Query: 106 RDGERVDEMFGA 117
R G++V E G
Sbjct: 81 RGGKKVSEHSGG 92
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQHIRYTP-TFHFYRDG 108
++N+ ASWC C P+ +L +FPK + ++ + R P +F+F D
Sbjct: 44 VLVNFWASWCPYCRDEXPSXDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDA 103
Query: 109 E-RVDEMFGAGEERLHD 124
+V + +GA RL D
Sbjct: 104 TGQVQQRYGA--NRLPD 118
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 35 NHKDILLQIKSSKIPAVINYGASWCGVCN---QILPAFCKLSNNFPKLSFIYADIDECPE 91
H+ +L +IK + ++++ A+WCG C QILP+ + + + ++FI D+D+
Sbjct: 11 THEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKD---VTFIKVDVDKNGN 67
Query: 92 TTQH--IRYTPTFHFYR----DGERVDEMFGAGEERL 122
+ P F + + + +D+ GA R+
Sbjct: 68 AADAYGVSSIPALFFVKKEGNEIKTLDQFVGADVSRI 104
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 49 PAVINYGASWCGVCNQILPAFCKLSNNFPKLSFI-YADIDECPETTQHIRYTPTFHFYR 106
PAV+ + A WC C P +++ + P+++F+ A +D+ P + + P F +
Sbjct: 41 PAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQ 99
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 49 PAVINYGASWCGVCNQILPAFCKLSNNFPKLSFI-YADIDECPETTQHIRYTPTFHFYR 106
PAV+ + A WC C P +++ + P+++F+ A +D+ P + + P F +
Sbjct: 27 PAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQ 85
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 39 ILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP---KLSFIYADIDECPETTQH 95
IL + + +P ++++ A WCG C Q+ P F + +L+ I
Sbjct: 56 ILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHR 115
Query: 96 IRYTPTFHFYRDGERVDEMFGA 117
I+ P F + G + GA
Sbjct: 116 IQGIPAFILFHKGRELARAAGA 137
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 42 QIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQHIRY-- 98
++ ++ P ++ + ASWCG C + P +N + +L + +ID P T + +
Sbjct: 20 EVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEG 79
Query: 99 TPTFHFYRDGERVDEMFGA 117
P + + +D G
Sbjct: 80 VPALRLVKGEQILDSTEGV 98
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNF----PKLSFIYADIDECPETTQH--IRYTPTFHF 104
++ + A WCG C + P + K + ++ D E + Q +R PT F
Sbjct: 28 LVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKF 87
Query: 105 YRDGERVD-EMFGAGEE 120
+R+G+ + + AG E
Sbjct: 88 FRNGDTASPKEYTAGRE 104
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFPKLS--FIYADIDECPETTQHIRYT----PTFHF 104
++ + A WCG C ++ P + K + K S A +D ET R+ PT
Sbjct: 151 LVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKI 210
Query: 105 YRDGERVD 112
+R G D
Sbjct: 211 FRKGRPYD 218
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNF----PKLSFIYADIDECPETTQHIRYT----PT 101
++ + A WCG C Q P + K++N P + A ID + R+ PT
Sbjct: 35 VLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPV--AKIDATSASVLASRFDVSGYPT 92
Query: 102 FHFYRDGERVD 112
+ G+ VD
Sbjct: 93 IKILKKGQAVD 103
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 49 PAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIY-ADIDECPETTQH--IRYTPTFHF 104
PA++++ A WCG C + P +L+ + IY D ++ E IR P+ F
Sbjct: 40 PAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILF 98
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 8/103 (7%)
Query: 29 TASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSF----IYA 84
T +N+ +I+L +I + A WCG C + P + +L + K F + A
Sbjct: 10 TVVVAKNYNEIVLDDTKD---VLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIA 66
Query: 85 DIDECP-ETTQHIRYTPTFHFYRDGERVDEMFGAGEERLHDRL 126
+D + I+ PT Y G + + +G + D +
Sbjct: 67 KVDATANDVPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLI 109
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 16/84 (19%)
Query: 35 NHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLS--FIYADIDECPET 92
N+ DI+L + + A WCG C ++ P + K + K S A +D +T
Sbjct: 22 NNADIIL----------VEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQT 71
Query: 93 TQHIRYT----PTFHFYRDGERVD 112
R+ PT +R G D
Sbjct: 72 DLAKRFDVSGYPTLKIFRKGRPFD 95
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 32.3 bits (72), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 34 QNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLS--FIYADIDECPE 91
+NH +I + K ++ Y A WCG C ++ P + +L++ + + + A +D
Sbjct: 366 KNHDEI---VNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEN 422
Query: 92 TTQH--IRYTPTFHFYRDGERVDEMFGAGEERL 122
+ I PT Y G++ + + G L
Sbjct: 423 DVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSL 455
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 54 YGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPE 91
+ A WCG C + P + K + + + A ID C E
Sbjct: 38 FFAPWCGHCKNMAPEYVKAAETLVEKNITLAQID-CTE 74
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSN----NFP---KLSFIYADIDECPETTQHIRYT--P 100
A++N+ A WC + P F + S+ FP ++ F D D+ + Q R + P
Sbjct: 25 ALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYP 84
Query: 101 TFHFYRDG 108
T +R+G
Sbjct: 85 TLKLFRNG 92
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQHIRYT----PTFHF 104
+I + A WCG C Q+ P + L + + + A +D + +Y PT +F
Sbjct: 28 VLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIYF 87
Query: 105 YRDGERVDEMFGAGEER 121
G++ + + G R
Sbjct: 88 APSGDKKNPIKFEGGNR 104
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 42 QIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLS-FIYADIDECPETTQH--IRY 98
Q++ SK P V+ + + C C P F + + + + F +I P T + ++
Sbjct: 19 QVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQG 78
Query: 99 TPTFHFYRDGERVDEMFG 116
TPTF F+ G V E G
Sbjct: 79 TPTFKFFCHGRPVWEQVG 96
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFP-------KLSFIYADIDECPETTQHIRYTPTFH 103
++ + A WCG C + P + ++ KL+ + A +++ + IR PT
Sbjct: 29 MVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIK 88
Query: 104 FYRDGE 109
++ GE
Sbjct: 89 IFQKGE 94
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 34 QNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPK-LSFIYADIDECPET 92
+N +D+ K + + + A WCG C Q+ P + KL + + + A +D
Sbjct: 257 KNFEDVAFDEKKN---VFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE 313
Query: 93 TQHIRY--TPTFHFY 105
+ ++ PT F+
Sbjct: 314 VEAVKVHSFPTLKFF 328
>pdb|3IA1|A Chain A, Crystal Structure Of Thio-Disulfide Isomerase From
Thermus Thermophilus
pdb|3IA1|B Chain B, Crystal Structure Of Thio-Disulfide Isomerase From
Thermus Thermophilus
Length = 154
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 49 PAVINYGASWCGVCNQILPAFCKLSNN 75
PAVI + ASWC VC P +++
Sbjct: 32 PAVIVFWASWCTVCKAEFPGLHRVAEE 58
>pdb|2K8V|A Chain A, Solution Structure Of Oxidised Erp18
Length = 157
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 29/110 (26%)
Query: 42 QIKSSKIPAVINYGASWCGVCNQILPAFC------KLSNNF------------------- 76
+ +S +P ++ SWCG C + P F +LS+NF
Sbjct: 34 EAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPD 93
Query: 77 ----PKLSFIYADIDECPETTQHIRYTPTFHFYRDGERVDEMFGAGEERL 122
P++ F+ PE +FY E+V + +ERL
Sbjct: 94 GGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERL 143
>pdb|1SEN|A Chain A, Endoplasmic Reticulum Protein Rp19 O95881
Length = 164
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 29/110 (26%)
Query: 42 QIKSSKIPAVINYGASWCGVCNQILPAFC------KLSNNF------------------- 76
+ +S +P ++ SWCG C + P F +LS+NF
Sbjct: 41 EAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPD 100
Query: 77 ----PKLSFIYADIDECPETTQHIRYTPTFHFYRDGERVDEMFGAGEERL 122
P++ F+ PE +FY E+V + +ERL
Sbjct: 101 GGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERL 150
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 34 QNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPK-LSFIYADIDECPET 92
+N +D+ K + + + A WCG C Q+ P + KL + + + A +D
Sbjct: 15 KNFEDVAFDEKKN---VFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE 71
Query: 93 TQHIRY--TPTFHFY 105
+ ++ PT F+
Sbjct: 72 VEAVKVHSFPTLKFF 86
>pdb|1LU4|A Chain A, 1.1 Angstrom Resolution Crystal Structure Of A Secreted
Mycobacterium Tuberculosis Disulfide Oxidoreductase
Homologous To E. Coli Dsbe: Implications For Functions
Length = 136
Score = 29.6 bits (65), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 49 PAVINYGASWCGVCNQILPAFCKLSNNFPKLSFI 82
PAV+ + WC CN P+ +++ P ++F+
Sbjct: 26 PAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFV 59
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Query: 27 LKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYAD 85
L AS D + ++ K V+++ A WCG C P F L+ K+ D
Sbjct: 1 LPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVD 60
Query: 86 IDECPETTQH--IRYTPTFHFYRDGERVDEMFGAGEERLHDR 125
P+T Q I+ P+ Y+ ER + EE+++ R
Sbjct: 61 CQAYPQTCQKAGIKAYPSVKLYQY-ERAKKSI--WEEQINSR 99
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQHIRYT----PTFHFYR 106
++ + A WCG C ++ P + + + + A +D T +Y PT +R
Sbjct: 25 LVEFFAPWCGHCKRLAPEYEAAATRLKGIVPL-AKVDCTANTNTCNKYGVSGYPTLKIFR 83
Query: 107 DGERV 111
DGE
Sbjct: 84 DGEEA 88
>pdb|2DBC|A Chain A, Solution Structure Of The Thioredoxin-Like Domain Of
Phosducin-Like Protein 2(Pdcl2)
Length = 135
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 59 CGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQHIRYTPTFHFYRDGERVDEMFGAG 118
C V NQ L L+ FP+ F+ A ++ C E H PT Y++G+ + G
Sbjct: 45 CLVVNQHLSV---LARKFPETKFVKAIVNSCIE-HYHDNCLPTIFVYKNGQIEGKFIGII 100
Query: 119 E 119
E
Sbjct: 101 E 101
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 50 AVINYGASWCGVCNQILPAFCK----LSNNFPKLSFIYADIDECPETTQHIRYT----PT 101
++ + A WCG C Q P + K L +N P ++ A ID + ++ PT
Sbjct: 37 VLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAV--AKIDATSASMLASKFDVSGYPT 94
Query: 102 FHFYRDGERVD 112
+ G+ VD
Sbjct: 95 IKILKKGQAVD 105
>pdb|3EMX|A Chain A, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
pdb|3EMX|B Chain B, Crystal Structure Of Thioredoxin From Aeropyrum Pernix
Length = 135
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSN--NFPKLSFIYADIDECPETTQH--------IRYT 99
A++ + C C++ P + S + P + FI+ + E + + T
Sbjct: 34 AILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGVEGT 93
Query: 100 PTFHFYRDGERVDEMFGA 117
PT FY++G VD++ GA
Sbjct: 94 PTLVFYKEGRIVDKLVGA 111
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNFPK-----LSFIYADIDECPETTQHIRYTPTFHF 104
+I + A WCG C + P + +L K ++ + A ++ P + +R PT +F
Sbjct: 48 VLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVP-SPYEVRGFPTIYF 106
Query: 105 YRDGERVDEMFGAGEERLHD 124
++++ G L D
Sbjct: 107 SPANKKLNPKKYEGGRELSD 126
>pdb|1NDO|B Chain B, Napthalene 1,2-Dioxygenase
pdb|1NDO|D Chain D, Napthalene 1,2-Dioxygenase
pdb|1NDO|F Chain F, Napthalene 1,2-Dioxygenase
pdb|1EG9|B Chain B, Naphthalene 1,2-Dioxygenase With Indole Bound In The
Active Site.
pdb|1O7M|B Chain B, Naphthalene 1,2-Dioxygenase, Binary Complex With Dioxygen
pdb|1O7N|B Chain B, Naphthalene 1,2-dioxygenase, Ternary Complex With Dioxygen
And Indole
pdb|1O7P|B Chain B, Naphthalene 1,2-Dioxygenase, Product Complex
pdb|1O7W|B Chain B, Naphthalene 1,2-Dioxygenase, Fully Reduced Form
pdb|1O7G|B Chain B, Naphthalene 1,2-Dioxygenase With Naphthalene Bound In The
Active Site.
pdb|1O7H|B Chain B, Naphthalene 1,2-Dioxygenase With Oxidized Rieske Iron
Sulphur Center Site.
pdb|1UUV|B Chain B, Naphthalene 1,2-Dioxygenase With Nitric Oxide And Indole
Bound In The Active Site.
pdb|1UUW|B Chain B, Naphthalene 1,2-dioxygenase With Nitric Oxide Bound In The
Active Site.
pdb|2HMJ|B Chain B, Crystal Structure Of The Naphthalene 1,2-Dioxygenase
Phe-352-Val Mutant.
pdb|2HMK|B Chain B, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
Phenanthrene
pdb|2HML|B Chain B, Crystal Structure Of The Naphthalene 1,2-Dioxygenase F352v
Mutant Bound To Phenanthrene.
pdb|2HMM|B Chain B, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
Anthracene
pdb|2HMN|B Chain B, Crystal Structure Of The Naphthalene 1,2-Dioxygenase F352v
Mutant Bound To Anthracene.
pdb|2HMO|B Chain B, Crystal Structure Of Naphthalene 1,2-Dioxygenase Bound To
3- Nitrotoluene
Length = 194
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 75 NFPKLSF------IYADIDECPETTQHIRYTPTFHFYRDGERVDEMFGAGEER 121
N PKL F + A +D + HIR H R G +VD + A E++
Sbjct: 110 NSPKLRFTRFITNVQAAMDVNDKELLHIRSNVILHRARRGNQVDVFYAAREDK 162
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 50 AVINYGASWCGVCNQILP 67
++ + ASWCGVC + +P
Sbjct: 36 VMLQFTASWCGVCRKEMP 53
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 50 AVINYGASWCGVCNQILPAFCKLSNNFPK-----LSFIYADIDECPETTQHIRYTPTFHF 104
+I + A WCG C + P + +L K ++ + A ++ P + +R PT +F
Sbjct: 373 VLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVP-SPYEVRGFPTIYF 431
Query: 105 YRDGERVDEMFGAGEERLHD 124
++++ G L D
Sbjct: 432 SPANKKLNPKKYEGGRELSD 451
>pdb|4FB5|A Chain A, Crystal Structure Of A Probable Oxidoreduxtase Protein
pdb|4FB5|B Chain B, Crystal Structure Of A Probable Oxidoreduxtase Protein
Length = 393
Score = 27.3 bits (59), Expect = 2.6, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 79 LSFIYADIDECPETTQHIRYTPT-FHFYRDGERVDEMFGAGEERLHDRLWL 128
L F I EC E + I P+ ++DG R+++ A + H+R W+
Sbjct: 340 LGFNDLKIIECRELIRAITGEPSSIVTFKDGLRIEKSVHAXAQSFHERRWI 390
>pdb|3RAZ|A Chain A, The Crystal Structure Of Thioredoxin-Related Protein
From Neisseria Meningitidis Serogroup B
Length = 151
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 43 IKSSKIPA-VINYGASWCGVCNQILPAFCK 71
++S K P ++N A+WCG C + PA K
Sbjct: 19 LQSLKAPVRIVNLWATWCGPCRKEXPAXSK 48
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain
pdb|3ZYL|B Chain B, Structure Of A Truncated Calm (Picalm) Anth Domain
Length = 271
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 5 FDGEKPKKDLEGMMDLNNHHGHLKTASSDQNHKDILL 41
FD K K+ +G+M N LKT QN D LL
Sbjct: 150 FDFTKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALL 186
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|B Chain B, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|C Chain C, Structure Of Calm (Picalm) In Complex With Vamp8
Length = 310
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 5 FDGEKPKKDLEGMMDLNNHHGHLKTASSDQNHKDILL 41
FD K K+ +G+M N LKT QN D LL
Sbjct: 150 FDFTKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALL 186
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein
pdb|1HFA|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Pi(4,5)p2 Complex
pdb|1HG5|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(1,2,3,4,5,6)p6
Complex
pdb|1HG2|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Inositol(4,5)p2 Complex
Length = 289
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 5 FDGEKPKKDLEGMMDLNNHHGHLKTASSDQNHKDILL 41
FD K K+ +G+M N LKT QN D LL
Sbjct: 143 FDFTKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALL 179
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain
pdb|3ZYK|B Chain B, Structure Of Calm (Picalm) Anth Domain
Length = 296
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 5 FDGEKPKKDLEGMMDLNNHHGHLKTASSDQNHKDILL 41
FD K K+ +G+M N LKT QN D LL
Sbjct: 150 FDFTKVKRGADGVMRTMNTEKLLKTVPIIQNQMDALL 186
>pdb|1AUG|A Chain A, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
pdb|1AUG|B Chain B, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
pdb|1AUG|C Chain C, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
pdb|1AUG|D Chain D, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
Length = 215
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 37 KDILLQIKSSKIPAVINYGASWCGVCNQILPAFC-KLSNNFPKLSFIYADIDECPETT 93
K I+ +IK IPA ++Y A VCN + ++S + P + + I PE T
Sbjct: 120 KRIVEEIKKEGIPAAVSYTAGTF-VCNHLFYGLMDEISRHHPHIRGGFIHIPYIPEQT 176
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 52 INYGASWCGVCNQILPAFCKLSNNF 76
I+ A+WCG C LPA +L +
Sbjct: 35 IDVWATWCGPCRGELPALKELEEKY 59
>pdb|2FTC|C Chain C, Structural Model For The Large Subunit Of The Mammalian
Mitochondrial Ribosome
Length = 211
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 20 LNNHHGHLKTASSDQNHKDILLQIKSSKIPA 50
+N H + S HK+ L+++K SK+PA
Sbjct: 181 INTKHNIIYVNGSVPGHKNCLVKVKDSKLPA 211
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 52 INYGASWCGVCNQILP 67
+++ ASWCG C Q P
Sbjct: 33 LDFWASWCGPCRQSFP 48
>pdb|3RNZ|A Chain A, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RNZ|B Chain B, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RNZ|C Chain C, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RNZ|D Chain D, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RO0|A Chain A, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
pdb|3RO0|B Chain B, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
pdb|3RO0|C Chain C, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
pdb|3RO0|D Chain D, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
Length = 223
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 37 KDILLQIKSSKIPAVINYGASWCGVCNQILPAFC-KLSNNFPKLSFIYADIDECPETT 93
K I+ +IK IPA ++Y A VCN + ++S + P + + I PE T
Sbjct: 120 KRIVEEIKKEGIPAAVSYTAGTF-VCNHLFYGLMDEISRHHPHIRGGFIHIPYIPEQT 176
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 50 AVINYGASWCGVCNQILPAFCKLS 73
++N+ A+WC C + +P+ +L+
Sbjct: 31 VIVNFWATWCPPCREEIPSXXRLN 54
>pdb|3CC2|G Chain G, The Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution With Rrna Sequence For The 23s Rrna And
Genome-Derived Sequences For R-Proteins
pdb|3CC4|G Chain G, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|3CC7|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2487u
pdb|3CCE|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535a
pdb|3CCJ|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2534u
pdb|3CCL|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535c. Density For Anisomycin Is
Visible But Not Included In Model.
pdb|3CCM|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2611u
pdb|3CCQ|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488u
pdb|3CCR|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488c. Density For Anisomycin Is
Visible But Not Included In The Model.
pdb|3CCS|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482a
pdb|3CCU|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482c
pdb|3CCV|G Chain G, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2616a
pdb|3CD6|G Chain G, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With
Cc-puromycin
pdb|3CPW|G Chain G, The Structure Of The Antibiotic Linezolid Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CMA|G Chain G, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3G4S|G Chain G, Co-Crystal Structure Of Tiamulin Bound To The Large
Ribosomal Subunit
pdb|3G6E|G Chain G, Co-Crystal Structure Of Homoharringtonine Bound To The
Large Ribosomal Subunit
pdb|3G71|G Chain G, Co-crystal Structure Of Bruceantin Bound To The Large
Ribosomal Subunit
pdb|3I55|G Chain G, Co-Crystal Structure Of Mycalamide A Bound To The Large
Ribosomal Subunit
pdb|3I56|G Chain G, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
Large Ribosomal Subunit
Length = 348
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 15 EGMMDLNNH-HGHLKTASSDQNHKDILLQIKSSKIPAVINYG 55
+G+ DLN + G + +D N + ++++SK PA I G
Sbjct: 76 DGLEDLNGYITGQVGLIGTDDNPFSLFQELEASKTPAPIGAG 117
>pdb|1JJ2|G Chain G, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|G Chain G, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
pdb|1K8A|I Chain I, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|I Chain I, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
pdb|1KD1|I Chain I, Co-crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|I Chain I, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|I Chain I, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1K73|I Chain I, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|1KC8|I Chain I, Co-Crystal Structure Of Blasticidin S Bound To The 50s
Ribosomal Subunit
pdb|1N8R|I Chain I, Structure Of Large Ribosomal Subunit In Complex With
Virginiamycin M
pdb|1NJI|I Chain I, Structure Of Chloramphenicol Bound To The 50s Ribosomal
Subunit
pdb|1Q7Y|I Chain I, Crystal Structure Of Ccdap-puromycin Bound At The Peptidyl
Transferase Center Of The 50s Ribosomal Subunit
pdb|1Q81|I Chain I, Crystal Structure Of Minihelix With 3' Puromycin Bound To
A- Site Of The 50s Ribosomal Subunit.
pdb|1Q82|I Chain I, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of
The 50s Ribosomal Subunit
pdb|1Q86|I Chain I, Crystal Structure Of Cca-Phe-Cap-Biotin Bound
Simultaneously At Half Occupancy To Both The A-Site And
P- Site Of The The 50s Ribosomal Subunit.
pdb|1QVF|G Chain G, Structure Of A Deacylated Trna Minihelix Bound To The E
Site Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1QVG|G Chain G, Structure Of Cca Oligonucleotide Bound To The Trna Binding
Sites Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1S72|G Chain G, Refined Crystal Structure Of The Haloarcula Marismortui
Large Ribosomal Subunit At 2.4 Angstrom Resolution
pdb|1W2B|G Chain G, Trigger Factor Ribosome Binding Domain In Complex With 50s
pdb|1YHQ|G Chain G, Crystal Structure Of Azithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YI2|G Chain G, Crystal Structure Of Erythromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIJ|G Chain G, Crystal Structure Of Telithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIT|G Chain G, Crystal Structure Of Virginiamycin M And S Bound To The
50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJ9|G Chain G, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
Haloarcula Marismortui Containing A Three Residue
Deletion In L22
pdb|1YJN|G Chain G, Crystal Structure Of Clindamycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJW|G Chain G, Crystal Structure Of Quinupristin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ4|G Chain G, The Structure Of The Transition State Analogue "daa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ5|G Chain G, The Structure Of The Transition State Analogue "raa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ6|G Chain G, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ7|G Chain G, The Structure Of The Transition State Analogue "dca" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ8|G Chain G, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQ9|G Chain G, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQK|G Chain G, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
The Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQL|G Chain G, The Structure Of The Transition State Analogue "dcsn"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQM|G Chain G, The Structure Of The Transition State Analogue "dan" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQN|G Chain G, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQO|G Chain G, The Structure Of Ccpmn Bound To The Large Ribosomal
Subunit Haloarcula Marismortui
pdb|1VQP|G Chain G, The Structure Of The Transition State Analogue "rap" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|2OTJ|G Chain G, 13-Deoxytedanolide Bound To The Large Subunit Of
Haloarcula Marismortui
pdb|2OTL|G Chain G, Girodazole Bound To The Large Subunit Of Haloarcula
Marismortui
pdb|2QA4|G Chain G, A More Complete Structure Of The The L7L12 STALK OF THE
Haloarcula Marismortui 50s Large Ribosomal Subunit
pdb|3CME|G Chain G, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
Ribosomal Subunit Of Haloarcula Marismortui
pdb|2QEX|G Chain G, Negamycin Binds To The Wall Of The Nascent Chain Exit
Tunnel Of The 50s Ribosomal Subunit
pdb|3CXC|G Chain G, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound
To The 50s Ribosomal Subunit Of H. Marismortui
Length = 348
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 15 EGMMDLNNH-HGHLKTASSDQNHKDILLQIKSSKIPAVINYG 55
+G+ DLN + G + +D N + ++++SK PA I G
Sbjct: 76 DGLEDLNGYITGQVGLIGTDDNPFSLFQELEASKTPAPIGAG 117
>pdb|1YB1|A Chain A, Crystal Structure Of Human 17-Beta-Hydroxysteroid
Dehydrogenase Type Xi
pdb|1YB1|B Chain B, Crystal Structure Of Human 17-Beta-Hydroxysteroid
Dehydrogenase Type Xi
Length = 272
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 22 NHHGHLKTASSDQNHKDI--LLQIKSSKIPAV 51
N+HGH+ T +S H + LL SSK AV
Sbjct: 157 NNHGHIVTVASAAGHVSVPFLLAYCSSKFAAV 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,514,609
Number of Sequences: 62578
Number of extensions: 171647
Number of successful extensions: 588
Number of sequences better than 100.0: 161
Number of HSP's better than 100.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 406
Number of HSP's gapped (non-prelim): 165
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)