Query 032967
Match_columns 130
No_of_seqs 114 out of 1480
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 08:09:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 99.9 4.2E-27 9.1E-32 148.3 11.3 102 25-129 42-147 (150)
2 KOG0907 Thioredoxin [Posttrans 99.9 4.8E-26 1E-30 138.2 12.1 98 32-129 6-105 (106)
3 cd02985 TRX_CDSP32 TRX family, 99.9 4.6E-25 9.9E-30 134.0 13.6 96 32-129 2-102 (103)
4 PHA02278 thioredoxin-like prot 99.9 7.2E-25 1.6E-29 132.8 12.5 91 31-125 2-100 (103)
5 PF00085 Thioredoxin: Thioredo 99.9 9.4E-25 2E-29 131.9 12.7 97 30-129 3-103 (103)
6 cd02954 DIM1 Dim1 family; Dim1 99.9 4.2E-25 9.2E-30 135.2 10.6 84 32-117 1-87 (114)
7 cd02948 TRX_NDPK TRX domain, T 99.9 9E-24 2E-28 128.1 13.2 95 29-128 3-101 (102)
8 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 5.4E-24 1.2E-28 128.7 11.2 94 27-125 3-100 (101)
9 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 6.6E-24 1.4E-28 128.9 11.5 96 27-126 3-104 (104)
10 cd03006 PDI_a_EFP1_N PDIa fami 99.9 1.6E-23 3.6E-28 128.8 12.1 101 24-126 8-113 (113)
11 cd02956 ybbN ybbN protein fami 99.9 1.6E-23 3.5E-28 125.4 11.8 91 35-127 2-96 (96)
12 PLN00410 U5 snRNP protein, DIM 99.9 2.2E-23 4.8E-28 132.0 12.5 100 27-128 5-118 (142)
13 cd02989 Phd_like_TxnDC9 Phosdu 99.9 2.5E-23 5.3E-28 128.3 12.2 90 24-117 3-94 (113)
14 cd02999 PDI_a_ERp44_like PDIa 99.9 1.8E-23 3.9E-28 126.3 10.8 90 34-126 7-100 (100)
15 cd03065 PDI_b_Calsequestrin_N 99.9 3.8E-23 8.3E-28 128.1 12.0 98 26-128 10-117 (120)
16 cd02963 TRX_DnaJ TRX domain, D 99.9 4.9E-23 1.1E-27 126.6 11.4 96 32-128 10-110 (111)
17 PTZ00051 thioredoxin; Provisio 99.9 1.5E-22 3.2E-27 121.6 12.4 94 27-124 2-97 (98)
18 PRK10996 thioredoxin 2; Provis 99.9 7.7E-22 1.7E-26 125.7 15.6 101 24-129 34-138 (139)
19 cd02957 Phd_like Phosducin (Ph 99.9 2.3E-22 4.9E-27 124.0 12.4 89 24-117 3-95 (113)
20 PRK09381 trxA thioredoxin; Pro 99.9 4.2E-22 9.2E-27 121.9 13.3 100 26-129 4-107 (109)
21 cd02984 TRX_PICOT TRX domain, 99.9 3.2E-22 6.9E-27 119.9 12.6 94 32-127 1-97 (97)
22 cd02996 PDI_a_ERp44 PDIa famil 99.9 2.4E-22 5.2E-27 122.9 11.2 95 27-126 3-108 (108)
23 cd02986 DLP Dim1 family, Dim1- 99.9 4.1E-22 8.8E-27 121.3 11.9 93 33-127 2-108 (114)
24 KOG0908 Thioredoxin-like prote 99.9 1.1E-22 2.5E-27 137.0 10.3 103 25-129 1-105 (288)
25 cd02994 PDI_a_TMX PDIa family, 99.9 6.6E-22 1.4E-26 119.5 12.6 94 27-128 3-101 (101)
26 COG3118 Thioredoxin domain-con 99.9 1.5E-22 3.2E-27 140.0 10.6 101 27-129 25-129 (304)
27 cd03005 PDI_a_ERp46 PDIa famil 99.9 7.8E-22 1.7E-26 119.1 11.6 93 28-126 3-102 (102)
28 cd02987 Phd_like_Phd Phosducin 99.9 8.2E-22 1.8E-26 129.9 12.5 106 22-129 59-174 (175)
29 cd02965 HyaE HyaE family; HyaE 99.9 9.6E-22 2.1E-26 119.7 11.1 92 28-124 13-110 (111)
30 cd03002 PDI_a_MPD1_like PDI fa 99.9 9.6E-22 2.1E-26 120.2 11.1 93 32-127 6-109 (109)
31 cd02962 TMX2 TMX2 family; comp 99.9 3.1E-21 6.6E-26 124.2 13.8 101 24-127 27-149 (152)
32 TIGR01068 thioredoxin thioredo 99.9 4.9E-21 1.1E-25 115.1 12.5 95 32-129 2-100 (101)
33 TIGR01126 pdi_dom protein disu 99.9 5.1E-21 1.1E-25 115.3 10.9 94 32-129 2-101 (102)
34 cd03001 PDI_a_P5 PDIa family, 99.9 9.9E-21 2.1E-25 114.4 11.9 92 32-126 6-102 (103)
35 cd02949 TRX_NTR TRX domain, no 99.9 1.3E-20 2.8E-25 113.2 12.3 89 36-127 5-97 (97)
36 cd02997 PDI_a_PDIR PDIa family 99.9 1.1E-20 2.3E-25 114.4 12.0 95 27-126 2-104 (104)
37 cd02995 PDI_a_PDI_a'_C PDIa fa 99.9 7.1E-21 1.5E-25 115.2 10.9 92 32-126 6-104 (104)
38 PTZ00443 Thioredoxin domain-co 99.9 1.3E-20 2.9E-25 128.1 13.3 104 25-129 30-138 (224)
39 TIGR01295 PedC_BrcD bacterioci 99.9 3.6E-20 7.8E-25 115.5 12.5 92 31-127 11-121 (122)
40 cd02950 TxlA TRX-like protein 99.8 2.9E-20 6.4E-25 118.8 11.7 93 33-129 10-109 (142)
41 cd02988 Phd_like_VIAF Phosduci 99.8 5.1E-20 1.1E-24 122.9 12.6 104 22-129 79-191 (192)
42 cd02953 DsbDgamma DsbD gamma f 99.8 1.4E-20 3.1E-25 114.2 8.9 90 34-127 2-104 (104)
43 cd03000 PDI_a_TMX3 PDIa family 99.8 4.4E-20 9.4E-25 112.2 10.5 90 34-129 7-103 (104)
44 PTZ00062 glutaredoxin; Provisi 99.8 6.3E-20 1.4E-24 123.0 12.1 90 31-129 4-93 (204)
45 KOG0190 Protein disulfide isom 99.8 1.1E-20 2.4E-25 139.2 9.0 121 5-129 345-472 (493)
46 cd02998 PDI_a_ERp38 PDIa famil 99.8 5.4E-20 1.2E-24 111.4 10.1 95 28-126 3-105 (105)
47 cd02993 PDI_a_APS_reductase PD 99.8 1.3E-19 2.8E-24 111.0 11.5 98 27-126 3-109 (109)
48 cd02975 PfPDO_like_N Pyrococcu 99.8 9.2E-20 2E-24 112.4 10.4 84 45-128 20-108 (113)
49 PTZ00102 disulphide isomerase; 99.8 1.8E-19 4E-24 134.6 13.6 119 7-129 339-464 (477)
50 cd02961 PDI_a_family Protein D 99.8 1.3E-19 2.9E-24 108.3 10.3 91 32-126 4-101 (101)
51 cd02947 TRX_family TRX family; 99.8 7.3E-19 1.6E-23 103.4 11.8 89 35-127 2-93 (93)
52 cd02951 SoxW SoxW family; SoxW 99.8 2.6E-18 5.7E-23 107.5 11.0 92 34-129 4-118 (125)
53 cd02952 TRP14_like Human TRX-r 99.8 2.9E-18 6.2E-23 106.0 10.8 96 29-126 5-118 (119)
54 KOG0190 Protein disulfide isom 99.8 9E-19 1.9E-23 129.3 8.7 101 24-129 24-131 (493)
55 cd02992 PDI_a_QSOX PDIa family 99.8 6.1E-18 1.3E-22 104.4 11.0 79 27-109 3-89 (114)
56 TIGR01130 ER_PDI_fam protein d 99.8 8.5E-18 1.8E-22 124.9 12.5 119 7-129 328-453 (462)
57 TIGR01130 ER_PDI_fam protein d 99.8 8.4E-18 1.8E-22 124.9 12.3 98 27-129 3-108 (462)
58 PTZ00102 disulphide isomerase; 99.8 1.3E-17 2.8E-22 124.7 13.3 98 26-129 33-137 (477)
59 PLN02309 5'-adenylylsulfate re 99.8 2.5E-17 5.4E-22 121.8 13.0 103 25-129 345-456 (457)
60 TIGR00424 APS_reduc 5'-adenyly 99.8 3.3E-17 7.2E-22 121.2 13.3 103 24-128 350-461 (463)
61 PRK00293 dipZ thiol:disulfide 99.7 4E-17 8.7E-22 124.4 12.4 106 24-129 451-569 (571)
62 cd03007 PDI_a_ERp29_N PDIa fam 99.7 5.5E-17 1.2E-21 99.7 9.0 92 31-129 6-115 (116)
63 cd02959 ERp19 Endoplasmic reti 99.7 1.8E-17 3.9E-22 102.7 6.2 93 34-126 6-109 (117)
64 TIGR00411 redox_disulf_1 small 99.7 2.1E-16 4.6E-21 91.7 10.0 76 50-129 2-81 (82)
65 cd02982 PDI_b'_family Protein 99.7 1.5E-16 3.3E-21 96.1 9.2 84 46-129 11-102 (103)
66 TIGR02187 GlrX_arch Glutaredox 99.7 6.8E-16 1.5E-20 104.9 11.9 83 46-128 18-109 (215)
67 TIGR02187 GlrX_arch Glutaredox 99.7 2.8E-15 6E-20 101.9 11.6 81 46-129 131-215 (215)
68 KOG4277 Uncharacterized conser 99.6 3.1E-16 6.7E-21 109.1 6.5 84 45-129 41-131 (468)
69 PHA02125 thioredoxin-like prot 99.6 2.7E-15 5.8E-20 86.0 9.3 69 51-127 2-74 (75)
70 PF13098 Thioredoxin_2: Thiore 99.6 9.8E-16 2.1E-20 93.9 6.1 83 44-126 2-112 (112)
71 TIGR00412 redox_disulf_2 small 99.6 5.8E-15 1.3E-19 84.8 8.4 71 51-127 2-76 (76)
72 PRK14018 trifunctional thiored 99.6 2E-14 4.3E-19 107.9 11.0 84 45-128 54-171 (521)
73 TIGR02740 TraF-like TraF-like 99.6 6.8E-14 1.5E-18 98.0 12.5 84 44-128 163-262 (271)
74 cd02955 SSP411 TRX domain, SSP 99.6 4.6E-14 1E-18 88.1 10.1 75 43-117 11-100 (124)
75 TIGR00385 dsbE periplasmic pro 99.6 1.8E-13 3.9E-18 90.1 12.4 82 46-129 62-170 (173)
76 KOG0912 Thiol-disulfide isomer 99.6 1E-14 2.2E-19 101.4 6.6 94 32-129 2-105 (375)
77 TIGR02738 TrbB type-F conjugat 99.6 1E-13 2.2E-18 89.5 10.7 82 46-128 49-151 (153)
78 PRK15412 thiol:disulfide inter 99.5 1.2E-13 2.5E-18 92.0 10.9 81 46-128 67-174 (185)
79 cd03010 TlpA_like_DsbE TlpA-li 99.5 9.3E-14 2E-18 86.9 9.7 77 45-122 23-126 (127)
80 cd02958 UAS UAS family; UAS is 99.5 1.3E-13 2.9E-18 84.9 10.2 96 34-129 4-110 (114)
81 cd02973 TRX_GRX_like Thioredox 99.5 9.8E-14 2.1E-18 77.6 7.9 60 50-111 2-63 (67)
82 cd03026 AhpF_NTD_C TRX-GRX-lik 99.5 2.7E-13 5.9E-18 80.0 10.0 74 46-123 11-87 (89)
83 PRK11509 hydrogenase-1 operon 99.5 6.1E-13 1.3E-17 83.4 11.3 94 32-129 23-123 (132)
84 cd02960 AGR Anterior Gradient 99.5 2.7E-13 5.9E-18 84.8 9.0 85 33-117 9-99 (130)
85 KOG0191 Thioredoxin/protein di 99.5 1.5E-13 3.2E-18 100.7 8.8 93 33-128 36-132 (383)
86 COG4232 Thiol:disulfide interc 99.5 2.5E-13 5.5E-18 101.8 9.7 101 27-129 456-567 (569)
87 cd03011 TlpA_like_ScsD_MtbDsbE 99.5 6E-13 1.3E-17 82.7 10.0 80 46-126 19-122 (123)
88 PLN02919 haloacid dehalogenase 99.5 4.8E-13 1E-17 108.1 12.0 83 46-128 419-534 (1057)
89 PRK03147 thiol-disulfide oxido 99.5 8.6E-13 1.9E-17 86.5 11.2 84 46-129 60-171 (173)
90 PF02114 Phosducin: Phosducin; 99.4 1.4E-12 3E-17 91.0 10.3 107 23-130 123-238 (265)
91 cd03009 TryX_like_TryX_NRX Try 99.4 1.1E-12 2.4E-17 82.5 8.2 67 46-112 17-114 (131)
92 cd02964 TryX_like_family Trypa 99.4 1.4E-12 3.1E-17 82.2 8.3 67 46-112 16-114 (132)
93 PF13905 Thioredoxin_8: Thiore 99.4 1.7E-12 3.7E-17 77.2 8.2 63 47-109 1-94 (95)
94 cd03008 TryX_like_RdCVF Trypar 99.4 2.4E-12 5.3E-17 82.4 9.0 68 45-112 23-127 (146)
95 cd02966 TlpA_like_family TlpA- 99.4 3.6E-12 7.9E-17 77.3 9.5 71 46-116 18-116 (116)
96 PF13899 Thioredoxin_7: Thiore 99.4 9.7E-13 2.1E-17 76.5 5.5 73 34-106 4-81 (82)
97 KOG0191 Thioredoxin/protein di 99.4 2.4E-12 5.2E-17 94.3 8.6 99 27-129 146-251 (383)
98 KOG1731 FAD-dependent sulfhydr 99.4 4.5E-13 9.7E-18 99.9 4.6 100 23-126 37-149 (606)
99 PRK13728 conjugal transfer pro 99.4 1.3E-11 2.8E-16 81.4 10.6 77 51-128 73-169 (181)
100 KOG1672 ATP binding protein [P 99.4 8.1E-12 1.8E-16 81.9 9.1 93 21-117 62-156 (211)
101 smart00594 UAS UAS domain. 99.3 3.3E-11 7.1E-16 75.1 10.5 95 33-127 13-122 (122)
102 cd03012 TlpA_like_DipZ_like Tl 99.3 1.7E-11 3.6E-16 76.7 9.2 72 46-117 22-125 (126)
103 KOG0914 Thioredoxin-like prote 99.3 3.1E-12 6.8E-17 85.3 5.7 95 21-117 120-224 (265)
104 PTZ00056 glutathione peroxidas 99.3 5.1E-11 1.1E-15 80.2 9.4 83 46-128 38-176 (199)
105 TIGR02196 GlrX_YruB Glutaredox 99.3 6.1E-11 1.3E-15 66.8 8.4 67 51-127 2-74 (74)
106 PF08534 Redoxin: Redoxin; In 99.3 7.2E-11 1.6E-15 75.4 9.3 79 46-124 27-144 (146)
107 TIGR02661 MauD methylamine deh 99.2 1.8E-10 3.8E-15 77.0 10.0 81 46-127 73-176 (189)
108 PLN02399 phospholipid hydroper 99.2 1.9E-10 4E-15 79.1 10.1 83 46-128 98-232 (236)
109 TIGR01626 ytfJ_HI0045 conserve 99.2 1.7E-10 3.6E-15 76.5 9.2 80 45-126 57-176 (184)
110 PF11009 DUF2847: Protein of u 99.2 1.3E-09 2.7E-14 65.7 10.2 93 28-122 2-104 (105)
111 PLN02412 probable glutathione 99.1 5.2E-10 1.1E-14 73.3 9.2 83 46-128 28-162 (167)
112 PF14595 Thioredoxin_9: Thiore 99.1 5E-10 1.1E-14 70.4 8.6 90 35-127 31-126 (129)
113 TIGR02540 gpx7 putative glutat 99.1 9.2E-10 2E-14 71.1 9.6 83 46-128 21-151 (153)
114 cd02967 mauD Methylamine utili 99.1 9.8E-11 2.1E-15 71.7 4.8 39 46-84 20-59 (114)
115 COG0526 TrxA Thiol-disulfide i 99.1 5.5E-10 1.2E-14 67.4 7.7 79 47-125 32-119 (127)
116 cd00340 GSH_Peroxidase Glutath 99.1 5.5E-10 1.2E-14 72.1 8.0 79 46-125 21-151 (152)
117 COG2143 Thioredoxin-related pr 99.1 4E-09 8.6E-14 67.3 10.9 85 43-127 38-146 (182)
118 PF06110 DUF953: Eukaryotic pr 99.1 1.9E-09 4.1E-14 66.6 9.2 93 31-126 3-117 (119)
119 PF13728 TraF: F plasmid trans 99.1 3.4E-09 7.3E-14 72.1 10.9 87 37-126 112-214 (215)
120 cd02969 PRX_like1 Peroxiredoxi 99.0 5.8E-09 1.3E-13 68.5 10.2 83 46-128 24-150 (171)
121 KOG3414 Component of the U4/U6 99.0 8.8E-09 1.9E-13 63.3 10.0 99 27-127 5-117 (142)
122 TIGR02200 GlrX_actino Glutared 99.0 4.4E-09 9.5E-14 59.9 8.4 68 51-127 2-76 (77)
123 PTZ00256 glutathione peroxidas 99.0 6.6E-09 1.4E-13 69.1 9.4 83 46-128 39-179 (183)
124 KOG0913 Thiol-disulfide isomer 99.0 1.7E-10 3.7E-15 77.8 1.4 95 26-128 25-124 (248)
125 PF13192 Thioredoxin_3: Thiore 99.0 1.1E-08 2.3E-13 58.6 8.7 70 53-127 4-76 (76)
126 cd01659 TRX_superfamily Thiore 99.0 5.1E-09 1.1E-13 56.4 7.1 58 51-108 1-63 (69)
127 PF02966 DIM1: Mitosis protein 98.9 6.2E-08 1.3E-12 60.2 11.5 98 27-127 2-114 (133)
128 cd02991 UAS_ETEA UAS family, E 98.9 6E-08 1.3E-12 59.9 11.2 92 35-128 5-111 (116)
129 cd03017 PRX_BCP Peroxiredoxin 98.9 1.8E-08 3.9E-13 63.7 8.8 81 46-126 22-139 (140)
130 KOG3425 Uncharacterized conser 98.9 3.1E-08 6.7E-13 60.4 9.1 83 32-117 11-112 (128)
131 KOG0911 Glutaredoxin-related p 98.9 1.6E-09 3.4E-14 72.8 3.4 92 26-123 2-95 (227)
132 TIGR02739 TraF type-F conjugat 98.9 5.8E-08 1.3E-12 67.5 11.3 82 46-128 149-246 (256)
133 PRK11200 grxA glutaredoxin 1; 98.9 3.6E-08 7.9E-13 57.5 8.7 72 50-128 2-81 (85)
134 cd02976 NrdH NrdH-redoxin (Nrd 98.8 5.2E-08 1.1E-12 54.6 8.4 66 51-126 2-73 (73)
135 PRK13703 conjugal pilus assemb 98.8 2.1E-07 4.5E-12 64.4 10.5 81 46-127 142-238 (248)
136 KOG3171 Conserved phosducin-li 98.7 6.3E-08 1.4E-12 64.9 7.5 105 23-129 136-250 (273)
137 PF00578 AhpC-TSA: AhpC/TSA fa 98.7 8.9E-08 1.9E-12 59.2 7.7 45 46-90 24-71 (124)
138 cd03014 PRX_Atyp2cys Peroxired 98.7 1.8E-07 3.9E-12 59.5 9.1 81 46-126 25-141 (143)
139 TIGR03143 AhpF_homolog putativ 98.7 3.3E-07 7.1E-12 70.4 10.8 76 47-126 475-554 (555)
140 KOG2501 Thioredoxin, nucleored 98.7 6.3E-08 1.4E-12 62.1 5.8 66 46-111 32-129 (157)
141 PRK00522 tpx lipid hydroperoxi 98.7 5.4E-07 1.2E-11 59.1 10.2 43 46-88 43-86 (167)
142 PF03190 Thioredox_DsbH: Prote 98.7 2E-07 4.3E-12 60.6 7.8 76 38-113 28-118 (163)
143 PRK10877 protein disulfide iso 98.6 2.3E-07 4.9E-12 63.9 8.3 78 46-129 106-230 (232)
144 TIGR02180 GRX_euk Glutaredoxin 98.6 1.7E-07 3.7E-12 54.1 6.2 58 51-111 1-65 (84)
145 PRK09437 bcp thioredoxin-depen 98.6 6.5E-07 1.4E-11 57.7 8.8 79 46-124 29-147 (154)
146 TIGR03137 AhpC peroxiredoxin. 98.6 7.4E-07 1.6E-11 59.4 9.1 83 46-128 30-154 (187)
147 cd03015 PRX_Typ2cys Peroxiredo 98.6 8.2E-07 1.8E-11 58.4 8.9 83 46-128 28-155 (173)
148 TIGR02183 GRXA Glutaredoxin, G 98.6 8E-07 1.7E-11 52.0 7.8 71 51-128 2-80 (86)
149 PRK10606 btuE putative glutath 98.6 6.2E-07 1.3E-11 59.6 8.1 41 46-87 24-66 (183)
150 PF00462 Glutaredoxin: Glutare 98.5 9.7E-07 2.1E-11 48.0 7.1 53 51-110 1-59 (60)
151 PRK15317 alkyl hydroperoxide r 98.5 1.8E-06 3.9E-11 65.8 10.8 78 47-128 116-196 (517)
152 PRK10329 glutaredoxin-like pro 98.5 2.2E-06 4.8E-11 49.6 8.8 68 51-128 3-75 (81)
153 KOG3170 Conserved phosducin-li 98.5 1E-06 2.3E-11 58.5 7.7 106 21-129 87-200 (240)
154 PF13848 Thioredoxin_6: Thiore 98.5 5.8E-06 1.2E-10 54.4 11.3 100 24-128 76-184 (184)
155 cd02971 PRX_family Peroxiredox 98.5 1.1E-06 2.5E-11 55.4 7.4 43 46-88 21-66 (140)
156 cd02968 SCO SCO (an acronym fo 98.4 1.3E-06 2.8E-11 55.3 7.3 43 46-88 21-69 (142)
157 cd03018 PRX_AhpE_like Peroxire 98.4 3.3E-06 7E-11 53.9 9.0 41 48-88 29-72 (149)
158 cd02970 PRX_like2 Peroxiredoxi 98.4 4.5E-07 9.8E-12 57.7 4.3 47 47-93 24-72 (149)
159 cd03020 DsbA_DsbC_DsbG DsbA fa 98.4 1.3E-06 2.8E-11 58.6 6.4 74 46-126 76-197 (197)
160 TIGR02190 GlrX-dom Glutaredoxi 98.4 3.5E-06 7.5E-11 48.4 7.3 59 46-111 5-68 (79)
161 TIGR02194 GlrX_NrdH Glutaredox 98.3 4.2E-06 9.2E-11 47.2 7.0 66 51-125 1-71 (72)
162 TIGR03140 AhpF alkyl hydropero 98.3 1.1E-05 2.4E-10 61.6 10.7 79 46-128 116-197 (515)
163 cd02066 GRX_family Glutaredoxi 98.3 2.1E-06 4.6E-11 47.6 5.0 55 51-112 2-62 (72)
164 PRK11657 dsbG disulfide isomer 98.3 6.8E-06 1.5E-10 57.3 7.8 82 46-128 116-250 (251)
165 PRK10382 alkyl hydroperoxide r 98.2 2.5E-05 5.4E-10 52.2 10.0 83 46-128 30-154 (187)
166 TIGR02189 GlrX-like_plant Glut 98.2 2.5E-06 5.4E-11 51.2 4.8 55 51-112 10-73 (99)
167 cd03419 GRX_GRXh_1_2_like Glut 98.2 7.4E-06 1.6E-10 47.0 6.6 56 51-111 2-64 (82)
168 cd03029 GRX_hybridPRX5 Glutare 98.2 2.1E-05 4.5E-10 44.2 8.2 64 51-126 3-71 (72)
169 PRK15000 peroxidase; Provision 98.2 1.7E-05 3.6E-10 53.5 9.0 82 46-127 33-159 (200)
170 PRK13190 putative peroxiredoxi 98.2 1.2E-05 2.6E-10 54.3 8.1 83 46-128 26-152 (202)
171 cd03418 GRX_GRXb_1_3_like Glut 98.2 2.4E-05 5.2E-10 44.1 7.9 54 51-111 2-62 (75)
172 TIGR00365 monothiol glutaredox 98.2 3.3E-05 7.2E-10 46.2 8.6 59 46-111 10-78 (97)
173 TIGR02181 GRX_bact Glutaredoxi 98.2 8E-06 1.7E-10 46.7 5.7 54 51-111 1-60 (79)
174 PHA03050 glutaredoxin; Provisi 98.1 1.6E-05 3.6E-10 48.4 6.9 58 51-112 15-81 (108)
175 cd03016 PRX_1cys Peroxiredoxin 98.1 2.7E-05 5.9E-10 52.6 8.6 40 49-88 28-69 (203)
176 PF13462 Thioredoxin_4: Thiore 98.1 8.2E-05 1.8E-09 47.9 10.5 41 46-86 11-54 (162)
177 cd02981 PDI_b_family Protein D 98.1 6.5E-05 1.4E-09 44.4 9.3 91 28-129 2-97 (97)
178 cd03027 GRX_DEP Glutaredoxin ( 98.1 2.5E-05 5.3E-10 44.1 6.9 54 51-111 3-62 (73)
179 cd02983 P5_C P5 family, C-term 98.1 0.00014 3E-09 45.8 10.9 101 25-129 2-114 (130)
180 PF01216 Calsequestrin: Calseq 98.1 0.00011 2.3E-09 53.0 10.5 95 26-127 35-141 (383)
181 PTZ00137 2-Cys peroxiredoxin; 98.0 0.00014 3.1E-09 51.0 10.0 82 46-127 97-222 (261)
182 PF05768 DUF836: Glutaredoxin- 98.0 4.2E-05 9.2E-10 44.1 6.2 76 50-127 1-81 (81)
183 PRK10824 glutaredoxin-4; Provi 98.0 6.5E-05 1.4E-09 46.3 7.1 59 47-112 14-82 (115)
184 TIGR03143 AhpF_homolog putativ 97.9 0.00029 6.3E-09 54.4 11.8 99 27-127 348-451 (555)
185 PRK10638 glutaredoxin 3; Provi 97.9 8.8E-05 1.9E-09 42.9 6.8 55 51-112 4-64 (83)
186 cd03028 GRX_PICOT_like Glutare 97.9 0.0001 2.2E-09 43.3 7.2 59 46-111 6-74 (90)
187 PRK13189 peroxiredoxin; Provis 97.9 0.00022 4.9E-09 48.9 9.2 43 46-88 34-79 (222)
188 COG0695 GrxC Glutaredoxin and 97.9 0.00019 4.1E-09 41.3 7.6 64 51-124 3-75 (80)
189 cd03072 PDI_b'_ERp44 PDIb' fam 97.9 0.00021 4.5E-09 43.8 8.1 92 32-129 5-107 (111)
190 cd03023 DsbA_Com1_like DsbA fa 97.8 7E-05 1.5E-09 47.6 5.9 41 46-86 4-44 (154)
191 PF07449 HyaE: Hydrogenase-1 e 97.8 0.00028 6E-09 42.9 7.3 85 28-117 12-101 (107)
192 PTZ00062 glutaredoxin; Provisi 97.6 0.00074 1.6E-08 45.7 8.9 60 45-111 111-179 (204)
193 cd02972 DsbA_family DsbA famil 97.5 0.00064 1.4E-08 39.5 6.2 36 51-86 1-37 (98)
194 PRK13191 putative peroxiredoxi 97.5 0.00019 4.1E-09 49.0 4.4 44 46-89 32-78 (215)
195 PRK12759 bifunctional gluaredo 97.5 0.00031 6.7E-09 52.4 5.6 54 51-111 4-71 (410)
196 PRK13599 putative peroxiredoxi 97.4 0.00026 5.6E-09 48.3 4.2 83 46-128 27-154 (215)
197 PTZ00253 tryparedoxin peroxida 97.3 0.00046 9.9E-09 46.4 4.7 44 46-89 35-81 (199)
198 cd03073 PDI_b'_ERp72_ERp57 PDI 97.3 0.0035 7.6E-08 38.3 8.1 72 58-129 29-110 (111)
199 KOG1752 Glutaredoxin and relat 97.3 0.0021 4.5E-08 38.9 6.9 55 51-111 16-78 (104)
200 KOG2603 Oligosaccharyltransfer 97.3 0.0023 5E-08 45.6 7.6 104 23-128 38-164 (331)
201 PF00837 T4_deiodinase: Iodoth 97.2 0.0041 8.8E-08 42.9 8.2 105 24-130 81-237 (237)
202 cd03066 PDI_b_Calsequestrin_mi 97.1 0.023 5E-07 34.0 9.9 93 27-129 2-100 (102)
203 cd03019 DsbA_DsbA DsbA family, 97.0 0.002 4.3E-08 42.1 5.0 40 46-85 14-54 (178)
204 COG1331 Highly conserved prote 96.9 0.006 1.3E-07 47.8 7.3 72 41-112 37-123 (667)
205 cd03069 PDI_b_ERp57 PDIb famil 96.7 0.053 1.2E-06 32.6 9.2 90 28-129 3-103 (104)
206 cd03067 PDI_b_PDIR_N PDIb fami 96.5 0.055 1.2E-06 32.5 8.2 95 29-128 5-110 (112)
207 cd03031 GRX_GRX_like Glutaredo 96.5 0.015 3.2E-07 37.4 6.1 54 51-111 2-71 (147)
208 PRK10954 periplasmic protein d 96.5 0.0058 1.3E-07 41.4 4.4 40 47-86 37-80 (207)
209 cd02974 AhpF_NTD_N Alkyl hydro 96.4 0.082 1.8E-06 31.4 10.3 83 33-127 7-91 (94)
210 PF01323 DSBA: DSBA-like thior 96.4 0.044 9.4E-07 36.2 8.5 36 50-85 1-38 (193)
211 PF13848 Thioredoxin_6: Thiore 96.3 0.039 8.5E-07 36.0 7.4 62 64-129 7-74 (184)
212 PF07912 ERp29_N: ERp29, N-ter 95.8 0.23 5E-06 30.9 9.8 92 32-129 10-118 (126)
213 PRK15317 alkyl hydroperoxide r 95.7 0.23 4.9E-06 38.3 10.4 83 33-127 7-91 (517)
214 cd03036 ArsC_like Arsenate Red 95.7 0.0058 1.2E-07 37.3 1.4 73 52-129 2-87 (111)
215 COG3634 AhpF Alkyl hydroperoxi 95.7 0.084 1.8E-06 38.9 7.4 89 33-127 104-195 (520)
216 cd02977 ArsC_family Arsenate R 95.6 0.021 4.5E-07 34.4 3.5 36 51-91 1-36 (105)
217 cd02990 UAS_FAF1 UAS family, F 95.3 0.41 8.8E-06 30.4 10.8 92 35-128 5-131 (136)
218 TIGR03140 AhpF alkyl hydropero 95.2 0.43 9.3E-06 36.8 10.4 84 33-127 7-92 (515)
219 PHA03075 glutaredoxin-like pro 95.2 0.049 1.1E-06 33.4 4.2 30 48-77 2-31 (123)
220 cd02978 KaiB_like KaiB-like fa 94.9 0.18 3.9E-06 28.4 5.6 56 50-105 3-62 (72)
221 cd03035 ArsC_Yffb Arsenate Red 94.7 0.061 1.3E-06 32.5 3.7 35 51-90 1-35 (105)
222 PRK01655 spxA transcriptional 94.7 0.075 1.6E-06 33.4 4.2 35 51-90 2-36 (131)
223 TIGR01617 arsC_related transcr 94.6 0.093 2E-06 32.2 4.4 35 52-91 2-36 (117)
224 cd03013 PRX5_like Peroxiredoxi 94.5 0.037 8.1E-07 35.7 2.7 45 46-90 29-77 (155)
225 COG1225 Bcp Peroxiredoxin [Pos 94.3 0.91 2E-05 29.6 8.9 84 46-129 29-155 (157)
226 cd03041 GST_N_2GST_N GST_N fam 94.1 0.45 9.8E-06 26.7 6.3 68 51-128 2-75 (77)
227 PRK12559 transcriptional regul 93.7 0.16 3.4E-06 32.0 4.2 34 51-89 2-35 (131)
228 cd03032 ArsC_Spx Arsenate Redu 93.6 0.19 4.2E-06 30.7 4.5 35 51-90 2-36 (115)
229 cd03060 GST_N_Omega_like GST_N 93.5 0.3 6.5E-06 26.8 4.8 55 52-110 2-59 (71)
230 PF06053 DUF929: Domain of unk 93.4 0.49 1.1E-05 33.2 6.5 58 45-106 56-113 (249)
231 PRK09301 circadian clock prote 92.7 1.1 2.3E-05 27.1 6.5 78 46-124 4-87 (103)
232 TIGR02654 circ_KaiB circadian 92.7 0.55 1.2E-05 27.5 5.1 74 48-122 3-82 (87)
233 PRK13344 spxA transcriptional 92.3 0.36 7.9E-06 30.4 4.4 34 51-89 2-35 (132)
234 cd03040 GST_N_mPGES2 GST_N fam 92.3 0.33 7.2E-06 27.0 3.9 50 51-105 2-54 (77)
235 PF13743 Thioredoxin_5: Thiore 91.9 0.5 1.1E-05 31.2 4.9 32 53-84 2-34 (176)
236 KOG2507 Ubiquitin regulatory p 91.4 3.4 7.4E-05 31.3 9.0 92 36-128 8-109 (506)
237 cd03051 GST_N_GTT2_like GST_N 91.3 0.69 1.5E-05 25.2 4.5 50 52-104 2-57 (74)
238 COG3019 Predicted metal-bindin 91.2 2.7 5.8E-05 26.9 7.5 71 48-128 25-102 (149)
239 COG4545 Glutaredoxin-related p 91.0 0.82 1.8E-05 26.0 4.3 22 52-73 5-26 (85)
240 cd00570 GST_N_family Glutathio 90.7 0.6 1.3E-05 24.6 3.8 50 52-104 2-55 (71)
241 PF04592 SelP_N: Selenoprotein 90.6 0.69 1.5E-05 32.0 4.6 45 44-88 23-72 (238)
242 COG1651 DsbG Protein-disulfide 90.1 0.74 1.6E-05 31.7 4.6 32 48-79 85-116 (244)
243 cd03059 GST_N_SspA GST_N famil 90.1 0.59 1.3E-05 25.5 3.4 49 52-103 2-53 (73)
244 cd03037 GST_N_GRX2 GST_N famil 90.0 1.9 4E-05 23.5 5.5 47 53-104 3-53 (71)
245 PF06764 DUF1223: Protein of u 89.9 4.6 9.9E-05 27.5 8.6 75 50-129 1-97 (202)
246 PF02630 SCO1-SenC: SCO1/SenC; 89.4 1.2 2.6E-05 29.3 5.0 44 46-89 51-99 (174)
247 COG0278 Glutaredoxin-related p 88.5 3.8 8.3E-05 24.6 6.5 64 45-112 13-83 (105)
248 cd03033 ArsC_15kD Arsenate Red 88.1 1.1 2.4E-05 27.4 3.8 33 51-88 2-34 (113)
249 cd03023 DsbA_Com1_like DsbA fa 87.9 0.9 2E-05 28.4 3.6 28 95-127 126-154 (154)
250 KOG2640 Thioredoxin [Function 87.6 0.27 5.9E-06 35.3 1.0 82 46-128 75-160 (319)
251 TIGR00014 arsC arsenate reduct 85.9 1.5 3.2E-05 26.8 3.6 33 52-89 2-34 (114)
252 cd03034 ArsC_ArsC Arsenate Red 85.8 1.5 3.3E-05 26.6 3.6 34 52-90 2-35 (112)
253 cd03045 GST_N_Delta_Epsilon GS 85.3 1.7 3.8E-05 23.7 3.4 50 52-104 2-57 (74)
254 cd03025 DsbA_FrnE_like DsbA fa 85.1 1.5 3.3E-05 28.8 3.7 27 51-77 3-29 (193)
255 PF07689 KaiB: KaiB domain; I 84.9 0.52 1.1E-05 27.2 1.1 50 54-103 3-56 (82)
256 cd03068 PDI_b_ERp72 PDIb famil 84.9 6.4 0.00014 23.7 10.7 93 27-129 2-107 (107)
257 cd03024 DsbA_FrnE DsbA family, 84.6 1.8 4E-05 28.6 3.8 29 95-127 172-201 (201)
258 cd03074 PDI_b'_Calsequestrin_C 84.4 7.3 0.00016 23.9 10.3 83 45-128 18-118 (120)
259 COG5494 Predicted thioredoxin/ 83.2 8.2 0.00018 26.6 6.3 71 51-128 13-86 (265)
260 COG2761 FrnE Predicted dithiol 82.3 2.7 5.9E-05 29.0 3.9 30 95-128 181-211 (225)
261 cd03022 DsbA_HCCA_Iso DsbA fam 81.6 2.3 5E-05 27.9 3.4 27 95-126 164-191 (192)
262 PF06953 ArsD: Arsenical resis 81.6 10 0.00023 23.6 7.4 48 78-127 40-99 (123)
263 cd03055 GST_N_Omega GST_N fami 81.5 7.1 0.00015 22.4 5.1 51 51-104 19-72 (89)
264 COG1999 Uncharacterized protei 80.1 6.7 0.00014 26.7 5.3 45 45-89 65-115 (207)
265 cd03030 GRX_SH3BGR Glutaredoxi 79.7 7.2 0.00016 22.9 4.7 56 55-112 5-72 (92)
266 PF14424 Toxin-deaminase: The 79.6 5.3 0.00012 25.3 4.3 30 52-84 99-130 (133)
267 cd03052 GST_N_GDAP1 GST_N fami 78.9 8.8 0.00019 21.1 5.6 54 52-110 2-61 (73)
268 COG1393 ArsC Arsenate reductas 78.0 4 8.7E-05 25.2 3.4 24 50-73 2-25 (117)
269 PF13417 GST_N_3: Glutathione 76.7 10 0.00022 20.8 7.8 66 53-128 1-69 (75)
270 PF03960 ArsC: ArsC family; I 76.5 6.1 0.00013 23.8 3.9 32 54-90 1-32 (110)
271 PRK10026 arsenate reductase; P 75.2 6.6 0.00014 25.1 3.9 33 50-87 3-35 (141)
272 PF06491 Disulph_isomer: Disul 75.1 18 0.0004 22.9 10.8 98 25-127 16-129 (136)
273 COG1651 DsbG Protein-disulfide 74.8 5.6 0.00012 27.3 3.8 30 95-129 212-242 (244)
274 TIGR01616 nitro_assoc nitrogen 73.4 6.4 0.00014 24.6 3.5 23 50-72 2-24 (126)
275 PRK10853 putative reductase; P 72.4 5.8 0.00013 24.4 3.1 21 51-71 2-22 (118)
276 COG0821 gcpE 1-hydroxy-2-methy 72.3 22 0.00047 26.3 6.2 32 98-129 318-350 (361)
277 PRK00366 ispG 4-hydroxy-3-meth 71.8 18 0.00039 26.9 5.8 98 27-128 246-355 (360)
278 TIGR02742 TrbC_Ftype type-F co 70.7 24 0.00052 22.3 8.6 88 34-128 12-113 (130)
279 PF04908 SH3BGR: SH3-binding, 70.3 7 0.00015 23.4 3.0 43 52-94 3-47 (99)
280 PF09673 TrbC_Ftype: Type-F co 66.6 27 0.00058 21.3 8.4 69 33-107 10-80 (113)
281 TIGR00612 ispG_gcpE 1-hydroxy- 65.7 14 0.0003 27.3 4.2 95 27-125 237-344 (346)
282 PF04551 GcpE: GcpE protein; 65.7 36 0.00077 25.4 6.3 71 59-129 271-358 (359)
283 cd03056 GST_N_4 GST_N family, 65.6 19 0.00041 19.2 5.7 50 52-104 2-57 (73)
284 PF13743 Thioredoxin_5: Thiore 65.6 4.7 0.0001 26.6 1.7 28 95-122 144-174 (176)
285 PF07315 DUF1462: Protein of u 65.6 26 0.00055 20.7 7.2 65 58-126 8-92 (93)
286 KOG4277 Uncharacterized conser 65.6 45 0.00097 24.5 6.6 85 44-128 247-349 (468)
287 PF04134 DUF393: Protein of un 65.3 10 0.00022 22.7 3.1 55 54-109 2-61 (114)
288 PF00255 GSHPx: Glutathione pe 65.3 28 0.00062 21.1 5.1 44 45-89 19-64 (108)
289 PF02702 KdpD: Osmosensitive K 65.1 42 0.00092 23.0 7.9 67 46-112 3-72 (211)
290 COG4097 Predicted ferric reduc 64.5 49 0.0011 25.1 6.8 81 46-130 341-424 (438)
291 PF07700 HNOB: Heme NO binding 63.8 27 0.00058 22.8 5.1 42 46-87 126-169 (171)
292 PF11287 DUF3088: Protein of u 63.8 11 0.00023 23.1 2.9 51 58-108 23-78 (112)
293 COG3531 Predicted protein-disu 63.7 13 0.00028 25.3 3.5 34 95-128 171-207 (212)
294 COG0386 BtuE Glutathione perox 63.0 40 0.00087 22.1 8.0 28 101-128 130-158 (162)
295 PF00352 TBP: Transcription fa 61.8 28 0.00062 19.9 4.8 56 68-128 20-77 (86)
296 PF08806 Sep15_SelM: Sep15/Sel 56.5 16 0.00035 20.8 2.6 32 98-129 41-75 (78)
297 cd03053 GST_N_Phi GST_N family 54.1 34 0.00074 18.4 4.5 50 51-103 2-57 (76)
298 KOG0911 Glutaredoxin-related p 52.9 70 0.0015 22.3 5.6 72 36-112 128-206 (227)
299 PRK09481 sspA stringent starva 52.1 57 0.0012 21.8 5.3 59 46-109 6-67 (211)
300 cd03022 DsbA_HCCA_Iso DsbA fam 50.5 39 0.00084 21.9 4.2 32 53-84 3-35 (192)
301 PF06289 FlbD: Flagellar prote 50.3 26 0.00057 19.0 2.7 37 90-129 16-54 (60)
302 cd03049 GST_N_3 GST_N family, 49.9 40 0.00087 18.0 4.4 55 53-109 3-60 (73)
303 PF09499 RE_ApaLI: ApaLI-like 49.6 64 0.0014 21.6 4.8 45 29-75 127-171 (191)
304 PTZ00151 translationally contr 48.5 38 0.00081 22.5 3.7 40 71-110 124-168 (172)
305 PF01216 Calsequestrin: Calseq 48.5 1.1E+02 0.0025 22.9 8.2 82 46-128 267-366 (383)
306 KOG0912 Thiol-disulfide isomer 48.2 1.1E+02 0.0024 22.6 6.2 91 27-129 110-207 (375)
307 COG3011 Predicted thiol-disulf 46.3 77 0.0017 20.2 6.5 65 45-110 4-72 (137)
308 PF08671 SinI: Anti-repressor 46.3 19 0.0004 16.6 1.5 15 115-129 15-29 (30)
309 COG3411 Ferredoxin [Energy pro 44.9 53 0.0012 18.0 3.6 29 98-129 16-44 (64)
310 PF13778 DUF4174: Domain of un 43.4 77 0.0017 19.4 9.6 83 46-128 9-110 (118)
311 KOG2244 Highly conserved prote 43.2 26 0.00057 27.8 2.7 63 44-106 109-185 (786)
312 TIGR02652 conserved hypothetic 42.2 9.2 0.0002 24.4 0.2 13 58-70 11-23 (163)
313 PF09654 DUF2396: Protein of u 41.8 9 0.0002 24.4 0.1 13 58-70 8-20 (161)
314 cd03024 DsbA_FrnE DsbA family, 40.4 52 0.0011 21.6 3.6 25 53-77 3-27 (201)
315 PRK13669 hypothetical protein; 39.5 75 0.0016 18.2 5.5 53 67-128 18-70 (78)
316 PHA02131 hypothetical protein 39.4 62 0.0014 17.2 3.5 27 97-123 27-53 (70)
317 PF14097 SpoVAE: Stage V sporu 38.6 50 0.0011 22.0 3.1 28 29-58 36-63 (180)
318 cd05863 Ig2_VEGFR-3 Second imm 38.0 28 0.00062 18.9 1.7 14 99-112 12-25 (67)
319 PF00403 HMA: Heavy-metal-asso 37.6 63 0.0014 16.7 4.4 32 54-88 4-35 (62)
320 cd05855 Ig_TrkB_d5 Fifth domai 37.4 24 0.00051 20.0 1.4 14 99-112 12-25 (79)
321 COG1582 FlgEa Uncharacterized 36.6 76 0.0017 17.4 4.2 35 93-129 19-54 (67)
322 PF09936 Methyltrn_RNA_4: SAM- 36.2 53 0.0011 22.1 3.0 26 31-59 119-144 (185)
323 cd06353 PBP1_BmpA_Med_like Per 36.0 1.5E+02 0.0032 20.6 5.6 49 32-87 42-90 (258)
324 cd03058 GST_N_Tau GST_N family 35.0 77 0.0017 17.0 5.0 50 52-104 2-55 (74)
325 PF14421 LmjF365940-deam: A di 34.8 74 0.0016 21.4 3.5 31 59-92 157-187 (193)
326 cd03375 TPP_OGFOR Thiamine pyr 34.5 1.1E+02 0.0023 20.5 4.4 29 29-57 156-184 (193)
327 PF09363 XFP_C: XFP C-terminal 34.4 52 0.0011 22.5 2.8 22 31-56 87-108 (203)
328 PF10281 Ish1: Putative stress 34.1 42 0.00091 16.0 1.8 13 118-130 5-17 (38)
329 KOG3029 Glutathione S-transfer 34.0 1.5E+02 0.0032 21.7 5.0 23 48-70 88-110 (370)
330 PHA02096 hypothetical protein 33.8 84 0.0018 18.1 3.2 45 51-105 28-72 (103)
331 PF11317 DUF3119: Protein of u 33.8 93 0.002 19.3 3.6 33 97-129 81-114 (116)
332 COG4752 Uncharacterized protei 33.7 67 0.0015 21.0 3.1 27 32-61 121-147 (190)
333 TIGR03107 glu_aminopep glutamy 33.5 2E+02 0.0044 21.4 6.3 80 46-127 249-332 (350)
334 PLN00062 TATA-box-binding prot 33.0 1.5E+02 0.0033 19.8 5.4 55 69-128 19-75 (179)
335 cd03061 GST_N_CLIC GST_N famil 32.9 1.1E+02 0.0023 18.0 4.5 44 57-103 20-66 (91)
336 PRK00394 transcription factor; 32.7 1.5E+02 0.0033 19.7 5.4 27 100-128 140-167 (179)
337 cd04518 TBP_archaea archaeal T 31.7 1E+02 0.0023 20.4 3.9 26 101-128 140-166 (174)
338 PF00838 TCTP: Translationally 31.4 95 0.0021 20.4 3.6 41 68-108 117-162 (165)
339 PRK10696 tRNA 2-thiocytidine b 31.0 1.9E+02 0.004 20.2 5.8 73 57-129 110-193 (258)
340 COG5429 Uncharacterized secret 30.8 1.1E+02 0.0024 21.6 3.9 39 48-87 42-80 (261)
341 cd03021 DsbA_GSTK DsbA family, 30.7 1.6E+02 0.0035 19.6 4.9 37 50-86 2-39 (209)
342 COG4312 Uncharacterized protei 30.4 1.5E+02 0.0032 20.8 4.4 33 55-87 87-121 (247)
343 PF03227 GILT: Gamma interfero 30.3 1.3E+02 0.0027 18.0 4.6 21 51-71 3-24 (108)
344 PF05679 CHGN: Chondroitin N-a 30.3 2.7E+02 0.0058 21.8 7.1 38 48-85 282-322 (499)
345 COG3581 Uncharacterized protei 30.2 1.9E+02 0.0041 22.1 5.3 57 28-87 51-113 (420)
346 PF05988 DUF899: Bacterial pro 29.3 1.1E+02 0.0025 21.0 3.8 44 45-88 66-116 (211)
347 cd00652 TBP_TLF TATA box bindi 29.3 1.2E+02 0.0025 20.1 3.8 26 101-128 141-167 (174)
348 PF09547 Spore_IV_A: Stage IV 29.1 1.8E+02 0.0039 22.7 5.1 50 37-88 170-219 (492)
349 PF14307 Glyco_tran_WbsX: Glyc 28.6 1.7E+02 0.0038 21.5 5.0 41 46-86 157-199 (345)
350 cd00307 RuBisCO_small_like Rib 28.2 70 0.0015 18.5 2.3 29 59-87 36-71 (84)
351 cd03044 GST_N_EF1Bgamma GST_N 28.1 1.1E+02 0.0023 16.5 4.2 49 53-104 3-56 (75)
352 cd03039 GST_N_Sigma_like GST_N 27.6 1.1E+02 0.0023 16.3 3.6 49 53-104 3-55 (72)
353 cd04971 Ig_TrKABC_d5 Fifth dom 27.4 46 0.001 18.6 1.5 14 99-112 12-25 (81)
354 PF13120 DUF3974: Domain of un 27.2 47 0.001 19.8 1.5 22 54-75 32-53 (126)
355 cd04516 TBP_eukaryotes eukaryo 27.2 1.9E+02 0.0042 19.1 5.1 26 101-128 140-166 (174)
356 PF02310 B12-binding: B12 bind 27.1 1.4E+02 0.0031 17.6 4.7 48 33-84 40-87 (121)
357 COG2101 SPT15 TATA-box binding 27.0 1.4E+02 0.0031 20.0 3.8 27 100-128 54-81 (185)
358 PHA02151 hypothetical protein 26.9 46 0.001 21.9 1.5 15 46-60 202-216 (217)
359 COG2077 Tpx Peroxiredoxin [Pos 26.9 1.9E+02 0.0041 19.0 5.1 42 46-87 44-85 (158)
360 cd01767 UBX UBX (ubiquitin reg 26.9 1.2E+02 0.0026 16.7 3.8 25 105-129 9-35 (77)
361 cd03376 TPP_PFOR_porB_like Thi 26.1 1.6E+02 0.0034 20.4 4.2 30 29-58 172-201 (235)
362 cd04517 TLF TBP-like factors ( 25.9 1.4E+02 0.0031 19.7 3.8 26 101-128 141-167 (174)
363 KOG4163 Prolyl-tRNA synthetase 25.8 59 0.0013 25.1 2.1 32 22-61 462-493 (551)
364 cd02008 TPP_IOR_alpha Thiamine 25.8 1.5E+02 0.0032 19.3 3.9 32 26-57 143-177 (178)
365 COG1921 SelA Selenocysteine sy 25.7 3.1E+02 0.0067 21.0 6.2 92 31-129 144-246 (395)
366 PF06279 DUF1033: Protein of u 25.5 53 0.0012 20.4 1.6 27 46-72 56-86 (120)
367 cd06105 ScCit1-2_like Saccharo 25.3 2.6E+02 0.0056 21.6 5.4 58 66-126 13-73 (427)
368 cd03050 GST_N_Theta GST_N fami 25.1 1.2E+02 0.0027 16.2 5.2 53 52-109 2-60 (76)
369 KOG2990 C2C2-type Zn-finger pr 24.9 61 0.0013 23.4 2.0 23 46-68 39-64 (317)
370 cd02015 TPP_AHAS Thiamine pyro 24.6 1.8E+02 0.004 19.0 4.2 32 26-57 143-174 (186)
371 cd03062 TRX_Fd_Sucrase TRX-lik 24.5 1.6E+02 0.0034 17.3 3.7 32 95-129 49-82 (97)
372 COG0295 Cdd Cytidine deaminase 24.4 52 0.0011 20.9 1.4 9 58-66 87-95 (134)
373 KOG0868 Glutathione S-transfer 24.4 25 0.00054 23.7 -0.0 58 46-110 3-67 (217)
374 cd05892 Ig_Myotilin_C C-termin 24.2 65 0.0014 17.7 1.7 14 98-111 11-24 (75)
375 COG1519 KdtA 3-deoxy-D-manno-o 24.0 2E+02 0.0044 22.1 4.6 38 50-87 50-87 (419)
376 cd02010 TPP_ALS Thiamine pyrop 23.8 1.8E+02 0.0039 19.0 4.0 32 25-56 138-169 (177)
377 PF02775 TPP_enzyme_C: Thiamin 23.6 1.9E+02 0.0041 18.1 4.0 29 25-53 122-152 (153)
378 TIGR01793 cit_synth_euk citrat 23.3 2.4E+02 0.0053 21.7 5.0 59 66-127 16-77 (427)
379 smart00592 BRK domain in trans 23.2 1E+02 0.0022 15.5 2.1 24 106-129 12-35 (45)
380 PRK11752 putative S-transferas 23.2 2.7E+02 0.0059 19.5 5.7 53 52-104 45-106 (264)
381 PF02591 DUF164: Putative zinc 23.1 67 0.0014 16.7 1.5 37 34-73 3-41 (56)
382 PF06180 CbiK: Cobalt chelatas 22.7 1.5E+02 0.0033 21.0 3.6 36 49-84 3-39 (262)
383 PRK11865 pyruvate ferredoxin o 22.6 2.2E+02 0.0047 20.7 4.4 30 29-58 183-212 (299)
384 cd02980 TRX_Fd_family Thioredo 22.2 1.5E+02 0.0032 16.0 3.6 29 97-129 48-77 (77)
385 TIGR01753 flav_short flavodoxi 21.8 2E+02 0.0042 17.4 3.7 24 51-75 2-25 (140)
386 cd01772 SAKS1_UBX SAKS1-like U 21.8 1.6E+02 0.0035 16.4 3.6 25 105-129 11-37 (79)
387 PRK12411 cytidine deaminase; P 21.7 60 0.0013 20.4 1.3 12 58-69 85-96 (132)
388 PRK09628 oorB 2-oxoglutarate-a 21.7 2E+02 0.0044 20.6 4.1 30 29-58 173-202 (277)
389 cd04976 Ig2_VEGFR Second immun 21.4 78 0.0017 17.0 1.6 13 99-111 12-24 (71)
390 cd05859 Ig4_PDGFR-alpha Fourth 21.4 64 0.0014 19.0 1.4 18 95-112 26-45 (101)
391 COG1744 Med Uncharacterized AB 21.3 3.5E+02 0.0075 20.0 6.1 49 32-87 82-130 (345)
392 KOG3160 Gamma-interferon induc 21.3 84 0.0018 21.8 2.0 21 46-66 38-58 (220)
393 cd03054 GST_N_Metaxin GST_N fa 21.3 1E+02 0.0022 16.4 2.1 57 57-127 14-70 (72)
394 PF15379 DUF4606: Domain of un 21.2 1.1E+02 0.0024 18.5 2.3 16 56-71 31-46 (104)
395 PF07293 DUF1450: Protein of u 21.1 1.8E+02 0.0039 16.6 5.4 54 66-128 17-70 (78)
396 cd01770 p47_UBX p47-like ubiqu 21.1 1.7E+02 0.0037 16.4 3.5 25 105-129 11-37 (79)
397 PRK06163 hypothetical protein; 21.0 2.2E+02 0.0048 19.2 4.0 29 29-57 145-173 (202)
398 KOG1651 Glutathione peroxidase 21.0 1.9E+02 0.0041 19.2 3.5 42 45-86 32-75 (171)
399 cd02009 TPP_SHCHC_synthase Thi 20.9 2.5E+02 0.0054 18.2 4.3 28 27-54 145-172 (175)
400 cd05864 Ig2_VEGFR-2 Second imm 20.8 83 0.0018 17.0 1.7 13 99-111 12-24 (70)
401 cd02004 TPP_BZL_OCoD_HPCL Thia 20.7 2.5E+02 0.0053 18.0 4.3 30 26-55 141-170 (172)
402 COG3531 Predicted protein-disu 20.1 1.2E+02 0.0026 20.8 2.5 28 49-76 2-29 (212)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.2e-27 Score=148.27 Aligned_cols=102 Identities=29% Similarity=0.613 Sum_probs=95.6
Q ss_pred CceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCChhhhc--CCccccE
Q 032967 25 GHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIRYTPT 101 (130)
Q Consensus 25 ~~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~~~~~~--~v~~~Pt 101 (130)
.....+.+..+|++.+. +++.||||.|||+||++|+.+.|.+++++.+|. .++++++|+|++++++. +|..+||
T Consensus 42 ~~~~~~~s~~~~~~~Vi---~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPt 118 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKVI---NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPT 118 (150)
T ss_pred cccccccCHHHHHHHHH---ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeE
Confidence 35667778999999995 899999999999999999999999999999998 69999999999999998 9999999
Q ss_pred EEEEeCCeEEEEeeCC-CHHHHHHHHhhc
Q 032967 102 FHFYRDGERVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 102 ~~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 129 (130)
+++|+||+...++.|. +.+.|+++|+++
T Consensus 119 vlvfknGe~~d~~vG~~~~~~l~~~i~k~ 147 (150)
T KOG0910|consen 119 VLVFKNGEKVDRFVGAVPKEQLRSLIKKF 147 (150)
T ss_pred EEEEECCEEeeeecccCCHHHHHHHHHHH
Confidence 9999999999999999 999999999875
No 2
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.8e-26 Score=138.21 Aligned_cols=98 Identities=33% Similarity=0.691 Sum_probs=86.8
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc--CCccccEEEEEeCCe
Q 032967 32 SDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRDGE 109 (130)
Q Consensus 32 ~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g~ 109 (130)
+..+++.....+..++++++|+|||+||++|+.+.|.+.+|+.+|+++.|+++|+|++.+++. +|...|||++|++|+
T Consensus 6 ~~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~ 85 (106)
T KOG0907|consen 6 TVSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGE 85 (106)
T ss_pred ehhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCE
Confidence 334454444444567899999999999999999999999999999999999999999888877 999999999999999
Q ss_pred EEEEeeCCCHHHHHHHHhhc
Q 032967 110 RVDEMFGAGEERLHDRLWLH 129 (130)
Q Consensus 110 ~~~~~~g~~~~~l~~~l~~~ 129 (130)
.+.++.|.+.+++++.+.++
T Consensus 86 ~~~~~vGa~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 86 EVDEVVGANKAELEKKIAKH 105 (106)
T ss_pred EEEEEecCCHHHHHHHHHhc
Confidence 99999999888999998765
No 3
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.94 E-value=4.6e-25 Score=134.00 Aligned_cols=96 Identities=27% Similarity=0.425 Sum_probs=87.3
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCCh---hhhc--CCccccEEEEEe
Q 032967 32 SDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECP---ETTQ--HIRYTPTFHFYR 106 (130)
Q Consensus 32 ~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~---~~~~--~v~~~Pt~~~~~ 106 (130)
+.++|++.+. ..+++++||.||++||++|+.+.|.+++++++++++.|+.||+++++ .++. +|.++||+++|+
T Consensus 2 ~~~~~~~~i~--~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 2 SVEELDEALK--KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred CHHHHHHHHH--HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 5789999997 44689999999999999999999999999999988999999999875 5555 999999999999
Q ss_pred CCeEEEEeeCCCHHHHHHHHhhc
Q 032967 107 DGERVDEMFGAGEERLHDRLWLH 129 (130)
Q Consensus 107 ~g~~~~~~~g~~~~~l~~~l~~~ 129 (130)
+|+.+.++.|..+++|++.+..+
T Consensus 80 ~G~~v~~~~G~~~~~l~~~~~~~ 102 (103)
T cd02985 80 DGEKIHEEEGIGPDELIGDVLYY 102 (103)
T ss_pred CCeEEEEEeCCCHHHHHHHHHhc
Confidence 99999999999999999988765
No 4
>PHA02278 thioredoxin-like protein
Probab=99.93 E-value=7.2e-25 Score=132.80 Aligned_cols=91 Identities=16% Similarity=0.235 Sum_probs=81.3
Q ss_pred cChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCC----hhhhc--CCccccEEE
Q 032967 31 SSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDEC----PETTQ--HIRYTPTFH 103 (130)
Q Consensus 31 ~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~----~~~~~--~v~~~Pt~~ 103 (130)
.+..+|.+.+. +++++||+|||+||++|+.+.|.++++++++. ++.|+++|++.+ +.++. +|.++|||+
T Consensus 2 ~~~~~~~~~i~----~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i 77 (103)
T PHA02278 2 NSLVDLNTAIR----QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLI 77 (103)
T ss_pred CCHHHHHHHHh----CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEE
Confidence 36788999984 88999999999999999999999999998754 588999999986 56665 999999999
Q ss_pred EEeCCeEEEEeeCC-CHHHHHHH
Q 032967 104 FYRDGERVDEMFGA-GEERLHDR 125 (130)
Q Consensus 104 ~~~~g~~~~~~~g~-~~~~l~~~ 125 (130)
+|++|+.+.++.|. +.++|.++
T Consensus 78 ~fk~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 78 GYKDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEECCEEEEEEeCCCCHHHHHhh
Confidence 99999999999998 88888775
No 5
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.93 E-value=9.4e-25 Score=131.88 Aligned_cols=97 Identities=27% Similarity=0.533 Sum_probs=91.4
Q ss_pred ccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCChhhhc--CCccccEEEEEe
Q 032967 30 ASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIRYTPTFHFYR 106 (130)
Q Consensus 30 i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~ 106 (130)
..+.++|++.+. ++++++||+||++||++|+.+.|.+.++++.++ ++.|+.+|+++++.++. +|.++||+++|+
T Consensus 3 ~lt~~~f~~~i~---~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 79 (103)
T PF00085_consen 3 VLTDENFEKFIN---ESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFK 79 (103)
T ss_dssp EESTTTHHHHHT---TTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEE
T ss_pred ECCHHHHHHHHH---ccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEE
Confidence 347899999995 468999999999999999999999999999998 89999999999999988 999999999999
Q ss_pred CCeEEEEeeCC-CHHHHHHHHhhc
Q 032967 107 DGERVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 107 ~g~~~~~~~g~-~~~~l~~~l~~~ 129 (130)
+|+...++.|. +.+.|.+||++|
T Consensus 80 ~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 80 NGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp TTEEEEEEESSSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCHHHHHHHHHcC
Confidence 99999999999 999999999986
No 6
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.93 E-value=4.2e-25 Score=135.16 Aligned_cols=84 Identities=23% Similarity=0.430 Sum_probs=76.8
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCC-eEEEEEECCCChhhhc--CCccccEEEEEeCC
Q 032967 32 SDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPK-LSFIYADIDECPETTQ--HIRYTPTFHFYRDG 108 (130)
Q Consensus 32 ~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~-v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g 108 (130)
+.++|++.+. .++++++||.|||+||++|+.+.|.+++++.++++ +.|++||++++++++. +|.++|||++|++|
T Consensus 1 ~~~~~~~~i~--~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G 78 (114)
T cd02954 1 SGWAVDQAIL--SEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRN 78 (114)
T ss_pred CHHHHHHHHh--ccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECC
Confidence 3578888886 34789999999999999999999999999999985 7999999999999987 99999999999999
Q ss_pred eEEEEeeCC
Q 032967 109 ERVDEMFGA 117 (130)
Q Consensus 109 ~~~~~~~g~ 117 (130)
+.+.+..|.
T Consensus 79 ~~v~~~~G~ 87 (114)
T cd02954 79 KHMKIDLGT 87 (114)
T ss_pred EEEEEEcCC
Confidence 999988885
No 7
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.92 E-value=9e-24 Score=128.07 Aligned_cols=95 Identities=27% Similarity=0.504 Sum_probs=86.4
Q ss_pred eccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCChhhhc--CCccccEEEE
Q 032967 29 TASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDECPETTQ--HIRYTPTFHF 104 (130)
Q Consensus 29 ~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~~~~~--~v~~~Pt~~~ 104 (130)
.+.+.++|++.+. ++++++|+|||+||++|+.+.|.++++++.++ .+.|+.+|++ +++++. +|.++||+++
T Consensus 3 ~i~~~~~~~~~i~----~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~ 77 (102)
T cd02948 3 EINNQEEWEELLS----NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLF 77 (102)
T ss_pred EccCHHHHHHHHc----cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEE
Confidence 4678999999884 78999999999999999999999999999986 4889999999 666665 9999999999
Q ss_pred EeCCeEEEEeeCCCHHHHHHHHhh
Q 032967 105 YRDGERVDEMFGAGEERLHDRLWL 128 (130)
Q Consensus 105 ~~~g~~~~~~~g~~~~~l~~~l~~ 128 (130)
|++|+.+.+..|.+.+.|.++|.+
T Consensus 78 ~~~g~~~~~~~G~~~~~~~~~i~~ 101 (102)
T cd02948 78 YKNGELVAVIRGANAPLLNKTITE 101 (102)
T ss_pred EECCEEEEEEecCChHHHHHHHhh
Confidence 999999999999999999999875
No 8
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.92 E-value=5.4e-24 Score=128.74 Aligned_cols=94 Identities=12% Similarity=0.253 Sum_probs=85.4
Q ss_pred eeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCChhhhc--CCccccEEE
Q 032967 27 LKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIRYTPTFH 103 (130)
Q Consensus 27 ~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~~~~~~--~v~~~Pt~~ 103 (130)
++.+ +.++|++.+. ++++++|+||++||++|+.+.|.++++++.++ .+.|++||+++++.++. +|.++||++
T Consensus 3 ~~~l-~~~~f~~~v~----~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 77 (101)
T cd03003 3 IVTL-DRGDFDAAVN----SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLY 77 (101)
T ss_pred eEEc-CHhhHHHHhc----CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEE
Confidence 4455 6789999884 56999999999999999999999999999998 68999999999999987 999999999
Q ss_pred EEeCCeEEEEeeCC-CHHHHHHH
Q 032967 104 FYRDGERVDEMFGA-GEERLHDR 125 (130)
Q Consensus 104 ~~~~g~~~~~~~g~-~~~~l~~~ 125 (130)
+|++|+.+.++.|. +.+.|.+|
T Consensus 78 ~~~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 78 VFPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred EEcCCCCcccCCCCCCHHHHHhh
Confidence 99999999999999 99988876
No 9
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.92 E-value=6.6e-24 Score=128.91 Aligned_cols=96 Identities=22% Similarity=0.460 Sum_probs=86.5
Q ss_pred eeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCChhhhc--CCccccEEE
Q 032967 27 LKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIRYTPTFH 103 (130)
Q Consensus 27 ~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~~~~~~--~v~~~Pt~~ 103 (130)
+..+ +.++|++.+. +++++++|.||++||++|+.+.|.+++++++++ .+.|+++|++++++++. +|.++||++
T Consensus 3 v~~l-~~~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 3 VITL-TPEDFPELVL---NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIR 78 (104)
T ss_pred ceEc-CHHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEE
Confidence 3444 6789999985 677899999999999999999999999999986 69999999999999987 999999999
Q ss_pred EEeCC-eEEEEeeCC-C-HHHHHHHH
Q 032967 104 FYRDG-ERVDEMFGA-G-EERLHDRL 126 (130)
Q Consensus 104 ~~~~g-~~~~~~~g~-~-~~~l~~~l 126 (130)
+|++| +.+.++.|. + .++|.+||
T Consensus 79 ~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 79 LYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEcCCCCCceEccCCCCCHHHHHhhC
Confidence 99998 889999998 7 99998875
No 10
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.91 E-value=1.6e-23 Score=128.77 Aligned_cols=101 Identities=12% Similarity=0.141 Sum_probs=87.4
Q ss_pred CCceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCChhhh-c--CCccc
Q 032967 24 HGHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETT-Q--HIRYT 99 (130)
Q Consensus 24 ~~~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~~~~~-~--~v~~~ 99 (130)
...+..+ +..+|++.+.- ..+++++||.||++||++|+.+.|.++++++.++ .+.|++||+++++.++ . +|.++
T Consensus 8 ~~~v~~l-~~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~ 85 (113)
T cd03006 8 RSPVLDF-YKGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYF 85 (113)
T ss_pred CCCeEEe-chhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCccc
Confidence 4456665 67889987311 2588999999999999999999999999999998 5999999999999887 3 89999
Q ss_pred cEEEEEeCCeEEEEeeCC-CHHHHHHHH
Q 032967 100 PTFHFYRDGERVDEMFGA-GEERLHDRL 126 (130)
Q Consensus 100 Pt~~~~~~g~~~~~~~g~-~~~~l~~~l 126 (130)
||+++|++|+...++.|. +.+.|..|+
T Consensus 86 PTl~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 86 PVIHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred CEEEEEECCccceEEeCCCCHHHHHhhC
Confidence 999999999998999999 999998763
No 11
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.91 E-value=1.6e-23 Score=125.43 Aligned_cols=91 Identities=25% Similarity=0.474 Sum_probs=83.1
Q ss_pred HHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCChhhhc--CCccccEEEEEeCCeEE
Q 032967 35 NHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIRYTPTFHFYRDGERV 111 (130)
Q Consensus 35 ~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g~~~ 111 (130)
+|++.+. .+.++++||+||++||++|+.+.|.+.+++..++ .+.++++|+++++.++. +|.++||+++|++|+.+
T Consensus 2 ~f~~~i~--~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 2 NFQQVLQ--ESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred ChHHHHH--hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEe
Confidence 5777885 3457899999999999999999999999999997 68999999999999987 99999999999999999
Q ss_pred EEeeCC-CHHHHHHHHh
Q 032967 112 DEMFGA-GEERLHDRLW 127 (130)
Q Consensus 112 ~~~~g~-~~~~l~~~l~ 127 (130)
.++.|. +.++|..+|+
T Consensus 80 ~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 80 DGFQGAQPEEQLRQMLD 96 (96)
T ss_pred eeecCCCCHHHHHHHhC
Confidence 999999 8999999874
No 12
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.91 E-value=2.2e-23 Score=132.02 Aligned_cols=100 Identities=19% Similarity=0.300 Sum_probs=88.8
Q ss_pred eeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCC-eEEEEEECCCChhhhc--CCccccEEE
Q 032967 27 LKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPK-LSFIYADIDECPETTQ--HIRYTPTFH 103 (130)
Q Consensus 27 ~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~-v~~~~id~~~~~~~~~--~v~~~Pt~~ 103 (130)
+.++.+.++|++.+. .+.++++||.||++||++|+.+.|.++++++++++ +.|++||+|++++++. +|.+.|+++
T Consensus 5 l~~l~s~~e~d~~I~--~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~ 82 (142)
T PLN00410 5 LPHLHSGWAVDQAIL--AEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVM 82 (142)
T ss_pred HhhhCCHHHHHHHHH--hcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEE
Confidence 456789999999997 45789999999999999999999999999999986 8889999999999998 999777655
Q ss_pred -EEeCCe-EEEEeeC--------C-CHHHHHHHHhh
Q 032967 104 -FYRDGE-RVDEMFG--------A-GEERLHDRLWL 128 (130)
Q Consensus 104 -~~~~g~-~~~~~~g--------~-~~~~l~~~l~~ 128 (130)
+|++|+ .+.+..| . +.++|.+.++.
T Consensus 83 ~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~ 118 (142)
T PLN00410 83 FFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
T ss_pred EEEECCeEEEEEecccccccccccCCHHHHHHHHHH
Confidence 999999 8999999 5 78888887764
No 13
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.91 E-value=2.5e-23 Score=128.29 Aligned_cols=90 Identities=20% Similarity=0.348 Sum_probs=83.7
Q ss_pred CCceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc--CCccccE
Q 032967 24 HGHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPT 101 (130)
Q Consensus 24 ~~~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~--~v~~~Pt 101 (130)
.+.+..+.+.++|.+.+. ++++++|+||++||++|+.+.|.+++++++++++.|++||+++++.++. +|.++||
T Consensus 3 ~g~v~~i~~~~~~~~~i~----~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt 78 (113)
T cd02989 3 HGKYREVSDEKEFFEIVK----SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPT 78 (113)
T ss_pred CCCeEEeCCHHHHHHHHh----CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCE
Confidence 578889999899999995 6789999999999999999999999999999999999999999999887 9999999
Q ss_pred EEEEeCCeEEEEeeCC
Q 032967 102 FHFYRDGERVDEMFGA 117 (130)
Q Consensus 102 ~~~~~~g~~~~~~~g~ 117 (130)
+++|++|+.+.++.|.
T Consensus 79 ~l~fk~G~~v~~~~g~ 94 (113)
T cd02989 79 VILFKNGKTVDRIVGF 94 (113)
T ss_pred EEEEECCEEEEEEECc
Confidence 9999999999887654
No 14
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.91 E-value=1.8e-23 Score=126.31 Aligned_cols=90 Identities=18% Similarity=0.249 Sum_probs=81.2
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECC-CChhhhc--CCccccEEEEEeCCeE
Q 032967 34 QNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADID-ECPETTQ--HIRYTPTFHFYRDGER 110 (130)
Q Consensus 34 ~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~-~~~~~~~--~v~~~Pt~~~~~~g~~ 110 (130)
..+.+++. ..++++++|.||++||++|+.+.|.++++++.++++.++.||.+ .++.++. +|.++||+++|++| .
T Consensus 7 ~~~~~~~~--~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~ 83 (100)
T cd02999 7 NIALDLMA--FNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-P 83 (100)
T ss_pred hHHHHHHH--hcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-c
Confidence 34566665 46899999999999999999999999999999999999999999 7888877 99999999999999 8
Q ss_pred EEEeeCC-CHHHHHHHH
Q 032967 111 VDEMFGA-GEERLHDRL 126 (130)
Q Consensus 111 ~~~~~g~-~~~~l~~~l 126 (130)
+.++.|. +.++|.+||
T Consensus 84 ~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 84 RVRYNGTRTLDSLAAFY 100 (100)
T ss_pred eeEecCCCCHHHHHhhC
Confidence 8999999 999999885
No 15
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.91 E-value=3.8e-23 Score=128.09 Aligned_cols=98 Identities=12% Similarity=0.158 Sum_probs=88.4
Q ss_pred ceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHh--HH--hhHHHHHHHHhhC--C-CeEEEEEECCCChhhhc--CC
Q 032967 26 HLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGV--CN--QILPAFCKLSNNF--P-KLSFIYADIDECPETTQ--HI 96 (130)
Q Consensus 26 ~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~--C~--~~~~~~~~l~~~~--~-~v~~~~id~~~~~~~~~--~v 96 (130)
.+..+ +.++|++.+. +++.++|++||++||++ |+ .+.|.+.++++++ . ++.|++||++++++++. +|
T Consensus 10 ~v~~l-t~~nF~~~v~---~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I 85 (120)
T cd03065 10 RVIDL-NEKNYKQVLK---KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGL 85 (120)
T ss_pred ceeeC-ChhhHHHHHH---hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCC
Confidence 44444 6799999995 78899999999999977 99 8899999999887 5 79999999999999998 99
Q ss_pred ccccEEEEEeCCeEEEEeeCC-CHHHHHHHHhh
Q 032967 97 RYTPTFHFYRDGERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 97 ~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
.++||+++|++|+.+. +.|. +.+.|.+||.+
T Consensus 86 ~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~ 117 (120)
T cd03065 86 DEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLD 117 (120)
T ss_pred ccccEEEEEECCEEEE-eeCCCCHHHHHHHHHH
Confidence 9999999999999887 9999 99999999986
No 16
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.90 E-value=4.9e-23 Score=126.62 Aligned_cols=96 Identities=14% Similarity=0.185 Sum_probs=85.7
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCChhhhc--CCccccEEEEEeC
Q 032967 32 SDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDECPETTQ--HIRYTPTFHFYRD 107 (130)
Q Consensus 32 ~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~ 107 (130)
+..+|.+.+.. ...++++||.||++||++|+.+.|.+++++++++ ++.+++||+++++.++. +|.++||+++|++
T Consensus 10 ~~~~~~~~~~~-~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~ 88 (111)
T cd02963 10 TFSQYENEIVP-KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIIN 88 (111)
T ss_pred eHHHHHHhhcc-ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEEC
Confidence 66778765531 2478999999999999999999999999999986 59999999999999887 9999999999999
Q ss_pred CeEEEEeeCC-CHHHHHHHHhh
Q 032967 108 GERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 108 g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
|+.+.++.|. +.+.|.++|++
T Consensus 89 g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 89 GQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred CEEEEEecCCCCHHHHHHHHhc
Confidence 9999999998 99999999986
No 17
>PTZ00051 thioredoxin; Provisional
Probab=99.90 E-value=1.5e-22 Score=121.61 Aligned_cols=94 Identities=29% Similarity=0.653 Sum_probs=86.6
Q ss_pred eeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc--CCccccEEEE
Q 032967 27 LKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHF 104 (130)
Q Consensus 27 ~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~--~v~~~Pt~~~ 104 (130)
+..+.+.++|.+.+. .+++++|+||++||++|+.+.|.++++++.++++.|+.+|++++..++. ++.++||+++
T Consensus 2 v~~i~~~~~~~~~~~----~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 77 (98)
T PTZ00051 2 VHIVTSQAEFESTLS----QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKV 77 (98)
T ss_pred eEEecCHHHHHHHHh----cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEE
Confidence 567888899999885 7899999999999999999999999999999899999999999988887 9999999999
Q ss_pred EeCCeEEEEeeCCCHHHHHH
Q 032967 105 YRDGERVDEMFGAGEERLHD 124 (130)
Q Consensus 105 ~~~g~~~~~~~g~~~~~l~~ 124 (130)
|++|+.+.++.|...++|++
T Consensus 78 ~~~g~~~~~~~G~~~~~~~~ 97 (98)
T PTZ00051 78 FKNGSVVDTLLGANDEALKQ 97 (98)
T ss_pred EeCCeEEEEEeCCCHHHhhc
Confidence 99999999999998888764
No 18
>PRK10996 thioredoxin 2; Provisional
Probab=99.90 E-value=7.7e-22 Score=125.74 Aligned_cols=101 Identities=26% Similarity=0.530 Sum_probs=91.3
Q ss_pred CCceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCChhhhc--CCcccc
Q 032967 24 HGHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIRYTP 100 (130)
Q Consensus 24 ~~~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~~~~~~--~v~~~P 100 (130)
.+.+... +..+|++.+. ++++++|+||++||++|+.+.|.+.++++++. ++.++++|+++++.++. +|.++|
T Consensus 34 ~~~~i~~-~~~~~~~~i~----~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~P 108 (139)
T PRK10996 34 DGEVINA-TGETLDKLLQ----DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIP 108 (139)
T ss_pred CCCCEEc-CHHHHHHHHh----CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccC
Confidence 4455554 7889999884 68999999999999999999999999998887 79999999999999987 999999
Q ss_pred EEEEEeCCeEEEEeeCC-CHHHHHHHHhhc
Q 032967 101 TFHFYRDGERVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 101 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 129 (130)
|+++|++|+.+.++.|. +.+.|.++|+++
T Consensus 109 tlii~~~G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 109 TIMIFKNGQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEEEEECCEEEEEEcCCCCHHHHHHHHHHh
Confidence 99999999999999999 999999999875
No 19
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.90 E-value=2.3e-22 Score=124.01 Aligned_cols=89 Identities=18% Similarity=0.384 Sum_probs=80.1
Q ss_pred CCceeeccChHHHHHHHHHhhcC--CCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc--CCccc
Q 032967 24 HGHLKTASSDQNHKDILLQIKSS--KIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYT 99 (130)
Q Consensus 24 ~~~~~~i~~~~~~~~~i~~~~~~--~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~--~v~~~ 99 (130)
.+.+.++.+ ++|.+.+. +. +++++|+||++||++|+.+.|.+++++++++++.|++||++++ .++. +|.++
T Consensus 3 ~g~v~~i~~-~~f~~~i~---~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~ 77 (113)
T cd02957 3 FGEVREISS-KEFLEEVT---KASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVL 77 (113)
T ss_pred CceEEEEcH-HHHHHHHH---ccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcC
Confidence 567778866 89999996 33 4899999999999999999999999999999999999999988 7776 99999
Q ss_pred cEEEEEeCCeEEEEeeCC
Q 032967 100 PTFHFYRDGERVDEMFGA 117 (130)
Q Consensus 100 Pt~~~~~~g~~~~~~~g~ 117 (130)
||+++|++|+.+.++.|.
T Consensus 78 Pt~~~f~~G~~v~~~~G~ 95 (113)
T cd02957 78 PTLLVYKNGELIDNIVGF 95 (113)
T ss_pred CEEEEEECCEEEEEEecH
Confidence 999999999999999874
No 20
>PRK09381 trxA thioredoxin; Provisional
Probab=99.89 E-value=4.2e-22 Score=121.91 Aligned_cols=100 Identities=25% Similarity=0.507 Sum_probs=89.7
Q ss_pred ceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCChhhhc--CCccccEE
Q 032967 26 HLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIRYTPTF 102 (130)
Q Consensus 26 ~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~~~~~~--~v~~~Pt~ 102 (130)
.++.+ +.++|.+.+. ..+++++|+||++||++|+.+.|.++++++.++ ++.++.+|++..+.++. ++.++||+
T Consensus 4 ~v~~~-~~~~~~~~v~---~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 79 (109)
T PRK09381 4 KIIHL-TDDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 79 (109)
T ss_pred cceee-ChhhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEE
Confidence 45566 5678988774 578999999999999999999999999999997 69999999999999876 99999999
Q ss_pred EEEeCCeEEEEeeCC-CHHHHHHHHhhc
Q 032967 103 HFYRDGERVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 103 ~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 129 (130)
++|++|+.+.++.|. +.++|.++|.++
T Consensus 80 ~~~~~G~~~~~~~G~~~~~~l~~~i~~~ 107 (109)
T PRK09381 80 LLFKNGEVAATKVGALSKGQLKEFLDAN 107 (109)
T ss_pred EEEeCCeEEEEecCCCCHHHHHHHHHHh
Confidence 999999999999999 999999999764
No 21
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.89 E-value=3.2e-22 Score=119.89 Aligned_cols=94 Identities=29% Similarity=0.588 Sum_probs=84.6
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhh-CCCeEEEEEECCCChhhhc--CCccccEEEEEeCC
Q 032967 32 SDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNN-FPKLSFIYADIDECPETTQ--HIRYTPTFHFYRDG 108 (130)
Q Consensus 32 ~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~-~~~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g 108 (130)
|.++|++.+. ...+++++|.||++||++|+.+.|.++++++. ++++.++.+|++++++++. ++.++||+++|++|
T Consensus 1 s~~~~~~~~~--~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 78 (97)
T cd02984 1 SEEEFEELLK--SDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNG 78 (97)
T ss_pred CHHHHHHHHh--hCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECC
Confidence 4678999997 33379999999999999999999999999998 5589999999999998877 99999999999999
Q ss_pred eEEEEeeCCCHHHHHHHHh
Q 032967 109 ERVDEMFGAGEERLHDRLW 127 (130)
Q Consensus 109 ~~~~~~~g~~~~~l~~~l~ 127 (130)
+.+.++.|.+.++|.+.|+
T Consensus 79 ~~~~~~~g~~~~~l~~~~~ 97 (97)
T cd02984 79 TIVDRVSGADPKELAKKVE 97 (97)
T ss_pred EEEEEEeCCCHHHHHHhhC
Confidence 9999999999999988764
No 22
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.89 E-value=2.4e-22 Score=122.87 Aligned_cols=95 Identities=24% Similarity=0.409 Sum_probs=83.2
Q ss_pred eeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-------CeEEEEEECCCChhhhc--CCc
Q 032967 27 LKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-------KLSFIYADIDECPETTQ--HIR 97 (130)
Q Consensus 27 ~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-------~v~~~~id~~~~~~~~~--~v~ 97 (130)
+..+ +.++|++.+. ++++++|.||++||++|+.+.|.++++++.++ ++.++++|+++++.++. +|.
T Consensus 3 v~~l-~~~~f~~~i~----~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~ 77 (108)
T cd02996 3 IVSL-TSGNIDDILQ----SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRIN 77 (108)
T ss_pred eEEc-CHhhHHHHHh----cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCC
Confidence 4445 6789999884 67899999999999999999999999987642 48999999999999887 999
Q ss_pred cccEEEEEeCCe-EEEEeeCC-CHHHHHHHH
Q 032967 98 YTPTFHFYRDGE-RVDEMFGA-GEERLHDRL 126 (130)
Q Consensus 98 ~~Pt~~~~~~g~-~~~~~~g~-~~~~l~~~l 126 (130)
++||+++|++|+ ....+.|. +.++|.+||
T Consensus 78 ~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 78 KYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred cCCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 999999999998 45788899 999999885
No 23
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.89 E-value=4.1e-22 Score=121.29 Aligned_cols=93 Identities=23% Similarity=0.411 Sum_probs=79.9
Q ss_pred hHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCC-eEEEEEECCCChhhhc--CCccccEEEEEeCCe
Q 032967 33 DQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPK-LSFIYADIDECPETTQ--HIRYTPTFHFYRDGE 109 (130)
Q Consensus 33 ~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~-v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g~ 109 (130)
.++|++.+. .++++++||.|+++||++|+.+.|.+++++++|++ +.|++||+++.++++. +|...||+++|++|+
T Consensus 2 ~~~~d~~i~--~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngk 79 (114)
T cd02986 2 KKEVDQAIK--STAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQ 79 (114)
T ss_pred HHHHHHHHH--hcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCc
Confidence 568888887 45799999999999999999999999999999998 9999999999999998 999999999999998
Q ss_pred EEE---------EeeCC--CHHHHHHHHh
Q 032967 110 RVD---------EMFGA--GEERLHDRLW 127 (130)
Q Consensus 110 ~~~---------~~~g~--~~~~l~~~l~ 127 (130)
.+. ++.+. +.+++++.+.
T Consensus 80 h~~~d~gt~~~~k~~~~~~~k~~~idi~e 108 (114)
T cd02986 80 HMKVDYGSPDHTKFVGSFKTKQDFIDLIE 108 (114)
T ss_pred EEEEecCCCCCcEEEEEcCchhHHHHHHH
Confidence 664 33444 4566666553
No 24
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.1e-22 Score=137.00 Aligned_cols=103 Identities=31% Similarity=0.640 Sum_probs=96.8
Q ss_pred CceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc--CCccccEE
Q 032967 25 GHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTF 102 (130)
Q Consensus 25 ~~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~--~v~~~Pt~ 102 (130)
+++..+.++.+|+..+. ....+.++|.|+++||++|+++.|.+..++.+|++..|++||+++++..+. +|...|||
T Consensus 1 m~Vi~v~~d~df~~~ls--~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTF 78 (288)
T KOG0908|consen 1 MPVIVVNSDSDFQRELS--AAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTF 78 (288)
T ss_pred CCeEEecCcHHHHHhhh--ccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceE
Confidence 46788999999999998 667789999999999999999999999999999999999999999998887 99999999
Q ss_pred EEEeCCeEEEEeeCCCHHHHHHHHhhc
Q 032967 103 HFYRDGERVDEMFGAGEERLHDRLWLH 129 (130)
Q Consensus 103 ~~~~~g~~~~~~~g~~~~~l~~~l~~~ 129 (130)
++|.+|..+.++.|.+...|++.+.+|
T Consensus 79 iff~ng~kid~~qGAd~~gLe~kv~~~ 105 (288)
T KOG0908|consen 79 IFFRNGVKIDQIQGADASGLEEKVAKY 105 (288)
T ss_pred EEEecCeEeeeecCCCHHHHHHHHHHH
Confidence 999999999999999999999998876
No 25
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.89 E-value=6.6e-22 Score=119.48 Aligned_cols=94 Identities=20% Similarity=0.333 Sum_probs=82.3
Q ss_pred eeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCChhhhc--CCccccEE
Q 032967 27 LKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDECPETTQ--HIRYTPTF 102 (130)
Q Consensus 27 ~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~~~~~--~v~~~Pt~ 102 (130)
++.+ +.++|++.+. +. +||.||++||++|+.+.|.+++++..++ ++.++.+|+++++.++. +|.++||+
T Consensus 3 v~~l-~~~~f~~~~~-----~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~ 75 (101)
T cd02994 3 VVEL-TDSNWTLVLE-----GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTI 75 (101)
T ss_pred eEEc-ChhhHHHHhC-----CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEE
Confidence 4555 6789998763 23 7999999999999999999999998875 69999999999999886 99999999
Q ss_pred EEEeCCeEEEEeeCC-CHHHHHHHHhh
Q 032967 103 HFYRDGERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 103 ~~~~~g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
+++++|+ +.++.|. +.++|.++|++
T Consensus 76 ~~~~~g~-~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 76 YHAKDGV-FRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EEeCCCC-EEEecCCCCHHHHHHHHhC
Confidence 9999997 4789999 99999999874
No 26
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.5e-22 Score=139.98 Aligned_cols=101 Identities=28% Similarity=0.558 Sum_probs=91.4
Q ss_pred eeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCChhhhc--CCccccEEE
Q 032967 27 LKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIRYTPTFH 103 (130)
Q Consensus 27 ~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~~~~~~--~v~~~Pt~~ 103 (130)
+..+ |..+|.+.+.. .+...||||+||+|||++|+.+.|.+++++..|+ .+++.+||||..+.++. +|.++||++
T Consensus 25 I~dv-T~anfe~~V~~-~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~ 102 (304)
T COG3118 25 IKDV-TEANFEQEVIQ-SSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVY 102 (304)
T ss_pred ceec-hHhHHHHHHHH-HccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEE
Confidence 5566 67899988873 2445699999999999999999999999999998 79999999999999987 999999999
Q ss_pred EEeCCeEEEEeeCC-CHHHHHHHHhhc
Q 032967 104 FYRDGERVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 104 ~~~~g~~~~~~~g~-~~~~l~~~l~~~ 129 (130)
.|++|..+..|.|. ..+.|++||.++
T Consensus 103 af~dGqpVdgF~G~qPesqlr~~ld~~ 129 (304)
T COG3118 103 AFKDGQPVDGFQGAQPESQLRQFLDKV 129 (304)
T ss_pred EeeCCcCccccCCCCcHHHHHHHHHHh
Confidence 99999999999999 888999999874
No 27
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.88 E-value=7.8e-22 Score=119.11 Aligned_cols=93 Identities=23% Similarity=0.502 Sum_probs=82.5
Q ss_pred eeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC----CeEEEEEECCCChhhhc--CCccccE
Q 032967 28 KTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP----KLSFIYADIDECPETTQ--HIRYTPT 101 (130)
Q Consensus 28 ~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~----~v~~~~id~~~~~~~~~--~v~~~Pt 101 (130)
..+ +.++|++.+. + ++++|.||++||++|+.+.|.+.+++++++ ++.++.+|+++++.++. +|.++||
T Consensus 3 ~~l-~~~~f~~~~~----~-~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 76 (102)
T cd03005 3 LEL-TEDNFDHHIA----E-GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPT 76 (102)
T ss_pred eEC-CHHHHHHHhh----c-CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCE
Confidence 344 6788999984 3 359999999999999999999999998875 49999999999998877 9999999
Q ss_pred EEEEeCCeEEEEeeCC-CHHHHHHHH
Q 032967 102 FHFYRDGERVDEMFGA-GEERLHDRL 126 (130)
Q Consensus 102 ~~~~~~g~~~~~~~g~-~~~~l~~~l 126 (130)
+++|++|+.+.++.|. +.++|.+||
T Consensus 77 ~~~~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 77 LLLFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEEEeCCCeeeEeeCCCCHHHHHhhC
Confidence 9999999999999999 999998875
No 28
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.88 E-value=8.2e-22 Score=129.86 Aligned_cols=106 Identities=14% Similarity=0.217 Sum_probs=90.5
Q ss_pred CCCCceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc--CCccc
Q 032967 22 NHHGHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYT 99 (130)
Q Consensus 22 ~~~~~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~--~v~~~ 99 (130)
...+.+..+.+.++|.+.+... .++.++||+||++||++|+.+.|.+.+++.+|+.+.|++||++++ .++. +|.++
T Consensus 59 ~~~g~v~ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~v 136 (175)
T cd02987 59 RRFGKVYELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDAL 136 (175)
T ss_pred CCCCeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCC
Confidence 4588999998779999998611 123599999999999999999999999999999999999999987 5555 99999
Q ss_pred cEEEEEeCCeEEEEeeCC--------CHHHHHHHHhhc
Q 032967 100 PTFHFYRDGERVDEMFGA--------GEERLHDRLWLH 129 (130)
Q Consensus 100 Pt~~~~~~g~~~~~~~g~--------~~~~l~~~l~~~ 129 (130)
||+++|++|+.+.++.|. +.++|..+|.++
T Consensus 137 PTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 137 PALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred CEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 999999999999877644 467888888765
No 29
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.88 E-value=9.6e-22 Score=119.66 Aligned_cols=92 Identities=15% Similarity=0.149 Sum_probs=83.8
Q ss_pred eeccChHHHHHHHHHhhcCCCcEEEEEeCCC--CHhHHhhHHHHHHHHhhCCC-eEEEEEECCCChhhhc--CCccccEE
Q 032967 28 KTASSDQNHKDILLQIKSSKIPAVINYGASW--CGVCNQILPAFCKLSNNFPK-LSFIYADIDECPETTQ--HIRYTPTF 102 (130)
Q Consensus 28 ~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~--C~~C~~~~~~~~~l~~~~~~-v~~~~id~~~~~~~~~--~v~~~Pt~ 102 (130)
..+ +..+|++.++ .+++++|.||++| |++|+.+.|.+++++++|++ +.|+++|+++++.++. +|.++||+
T Consensus 13 ~~~-~~~~~~~~~~----~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTl 87 (111)
T cd02965 13 PRV-DAATLDDWLA----AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPAL 87 (111)
T ss_pred ccc-ccccHHHHHh----CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEE
Confidence 344 6788998884 8899999999997 99999999999999999985 8899999999999987 99999999
Q ss_pred EEEeCCeEEEEeeCC-CHHHHHH
Q 032967 103 HFYRDGERVDEMFGA-GEERLHD 124 (130)
Q Consensus 103 ~~~~~g~~~~~~~g~-~~~~l~~ 124 (130)
++|++|+.+.++.|. +.+++..
T Consensus 88 i~fkdGk~v~~~~G~~~~~e~~~ 110 (111)
T cd02965 88 LFFRDGRYVGVLAGIRDWDEYVA 110 (111)
T ss_pred EEEECCEEEEEEeCccCHHHHhh
Confidence 999999999999999 8888753
No 30
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.88 E-value=9.6e-22 Score=120.16 Aligned_cols=93 Identities=18% Similarity=0.445 Sum_probs=83.4
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCC--Chhhhc--CCccccEEEEEe
Q 032967 32 SDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDE--CPETTQ--HIRYTPTFHFYR 106 (130)
Q Consensus 32 ~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~--~~~~~~--~v~~~Pt~~~~~ 106 (130)
+.++|++.+. +++++++|.||++||++|+.+.|.+.++++.++ .+.++.+|++. ++.++. +|.++||+++|.
T Consensus 6 ~~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~ 82 (109)
T cd03002 6 TPKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFR 82 (109)
T ss_pred chhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEe
Confidence 6789999995 678899999999999999999999999999987 58999999998 777876 999999999999
Q ss_pred CCe-----EEEEeeCC-CHHHHHHHHh
Q 032967 107 DGE-----RVDEMFGA-GEERLHDRLW 127 (130)
Q Consensus 107 ~g~-----~~~~~~g~-~~~~l~~~l~ 127 (130)
+|+ ....+.|. +.++|.+||.
T Consensus 83 ~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 83 PPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred CCCcccccccccccCccCHHHHHHHhC
Confidence 886 46788999 9999999973
No 31
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.88 E-value=3.1e-21 Score=124.19 Aligned_cols=101 Identities=19% Similarity=0.369 Sum_probs=85.7
Q ss_pred CCceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCChhhhc--CCcc-
Q 032967 24 HGHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDECPETTQ--HIRY- 98 (130)
Q Consensus 24 ~~~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~~~~~--~v~~- 98 (130)
+..+..+ +.++|++.+. ...+++++|.||++||++|+.+.|.++++++++. ++.|++||++++++++. +|.+
T Consensus 27 ~~~v~~l-~~~~f~~~l~--~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~ 103 (152)
T cd02962 27 PEHIKYF-TPKTLEEELE--RDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTS 103 (152)
T ss_pred CCccEEc-CHHHHHHHHH--hcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceec
Confidence 3455555 5789999886 3456899999999999999999999999999986 59999999999999987 7777
Q ss_pred -----ccEEEEEeCCeEEEEeeC----------C--CHHHHHHHHh
Q 032967 99 -----TPTFHFYRDGERVDEMFG----------A--GEERLHDRLW 127 (130)
Q Consensus 99 -----~Pt~~~~~~g~~~~~~~g----------~--~~~~l~~~l~ 127 (130)
+||+++|++|+.+.++.| . +.++++..++
T Consensus 104 ~~v~~~PT~ilf~~Gk~v~r~~G~~~~~~~~~~~~~~~~~~~~~~~ 149 (152)
T cd02962 104 PLSKQLPTIILFQGGKEVARRPYYNDSKGRAVPFTFSKENVIRHFD 149 (152)
T ss_pred CCcCCCCEEEEEECCEEEEEEeccccCccccccccccHHHHHHhcc
Confidence 999999999999999997 3 7777766543
No 32
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.87 E-value=4.9e-21 Score=115.07 Aligned_cols=95 Identities=29% Similarity=0.647 Sum_probs=86.5
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCChhhhc--CCccccEEEEEeCC
Q 032967 32 SDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIRYTPTFHFYRDG 108 (130)
Q Consensus 32 ~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g 108 (130)
+.++|.+.+. ..+++++|+||++||++|+.+.|.+.++++.++ ++.|+.+|++.++.++. ++.++|++++|.+|
T Consensus 2 ~~~~~~~~~~---~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 78 (101)
T TIGR01068 2 TDANFDETIA---SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNG 78 (101)
T ss_pred CHHHHHHHHh---hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCC
Confidence 4678888885 567899999999999999999999999998887 69999999999998876 99999999999999
Q ss_pred eEEEEeeCC-CHHHHHHHHhhc
Q 032967 109 ERVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 109 ~~~~~~~g~-~~~~l~~~l~~~ 129 (130)
+...++.|. +.++|.++|+++
T Consensus 79 ~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 79 KEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred cEeeeecCCCCHHHHHHHHHhh
Confidence 999999999 899999999864
No 33
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.86 E-value=5.1e-21 Score=115.32 Aligned_cols=94 Identities=21% Similarity=0.451 Sum_probs=86.0
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC---CeEEEEEECCCChhhhc--CCccccEEEEEe
Q 032967 32 SDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP---KLSFIYADIDECPETTQ--HIRYTPTFHFYR 106 (130)
Q Consensus 32 ~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~---~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~ 106 (130)
+.++|++.+. ++++++|+||++||+.|+.+.+.+++++..++ ++.++.+|+++++.++. ++.++|++++|+
T Consensus 2 ~~~~~~~~~~----~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~ 77 (102)
T TIGR01126 2 TASNFDDIVL----SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFP 77 (102)
T ss_pred chhhHHHHhc----cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEec
Confidence 5678888884 78999999999999999999999999998887 49999999999999986 999999999999
Q ss_pred CCeEEEEeeCC-CHHHHHHHHhhc
Q 032967 107 DGERVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 107 ~g~~~~~~~g~-~~~~l~~~l~~~ 129 (130)
+|+.+.++.|. +.++|..||.++
T Consensus 78 ~~~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 78 KGKKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred CCCcceeecCCCCHHHHHHHHHhc
Confidence 88878899999 999999999875
No 34
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.86 E-value=9.9e-21 Score=114.44 Aligned_cols=92 Identities=21% Similarity=0.386 Sum_probs=83.2
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCChhhhc--CCccccEEEEEeCC
Q 032967 32 SDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIRYTPTFHFYRDG 108 (130)
Q Consensus 32 ~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g 108 (130)
+..+|.+.+. .++++++|+||++||++|+.+.|.+.++++.++ .+.++.+|+++++.++. +|.++|++++|.+|
T Consensus 6 ~~~~~~~~i~---~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 6 TDSNFDKKVL---NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred CHHhHHHHHh---cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCC
Confidence 6789999985 567789999999999999999999999999986 79999999999999877 99999999999988
Q ss_pred -eEEEEeeCC-CHHHHHHHH
Q 032967 109 -ERVDEMFGA-GEERLHDRL 126 (130)
Q Consensus 109 -~~~~~~~g~-~~~~l~~~l 126 (130)
.....+.|. +.++|.+|+
T Consensus 83 ~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 83 KNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CcceeecCCCCCHHHHHHHh
Confidence 566788899 999999986
No 35
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.86 E-value=1.3e-20 Score=113.16 Aligned_cols=89 Identities=27% Similarity=0.461 Sum_probs=81.4
Q ss_pred HHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCChhhhc--CCccccEEEEEeCCeEEE
Q 032967 36 HKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIRYTPTFHFYRDGERVD 112 (130)
Q Consensus 36 ~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g~~~~ 112 (130)
++..+. ..+++++++||++||+.|+.+.|.+++++++++ ++.++.+|+++.+++.. ++.++|+++++++|+.+.
T Consensus 5 ~~~~~~---~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~ 81 (97)
T cd02949 5 LRKLYH---ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVK 81 (97)
T ss_pred HHHHHH---hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEE
Confidence 456664 688999999999999999999999999999987 69999999999998877 999999999999999999
Q ss_pred EeeCC-CHHHHHHHHh
Q 032967 113 EMFGA-GEERLHDRLW 127 (130)
Q Consensus 113 ~~~g~-~~~~l~~~l~ 127 (130)
++.|. +.++|.++|+
T Consensus 82 ~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 82 EISGVKMKSEYREFIE 97 (97)
T ss_pred EEeCCccHHHHHHhhC
Confidence 99999 9999999874
No 36
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.86 E-value=1.1e-20 Score=114.41 Aligned_cols=95 Identities=20% Similarity=0.475 Sum_probs=83.3
Q ss_pred eeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC---CeEEEEEECCC--Chhhhc--CCccc
Q 032967 27 LKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP---KLSFIYADIDE--CPETTQ--HIRYT 99 (130)
Q Consensus 27 ~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~---~v~~~~id~~~--~~~~~~--~v~~~ 99 (130)
+.++ +..+|++.+. ++++++|.||++||++|+.+.|.+.++++.++ .+.++.+|++. ++.++. ++.++
T Consensus 2 ~~~l-~~~~~~~~~~----~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~ 76 (104)
T cd02997 2 VVHL-TDEDFRKFLK----KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGF 76 (104)
T ss_pred eEEe-chHhHHHHHh----hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccc
Confidence 3445 5678999885 56699999999999999999999999998875 48899999998 888776 99999
Q ss_pred cEEEEEeCCeEEEEeeCC-CHHHHHHHH
Q 032967 100 PTFHFYRDGERVDEMFGA-GEERLHDRL 126 (130)
Q Consensus 100 Pt~~~~~~g~~~~~~~g~-~~~~l~~~l 126 (130)
||+++|++|+.+.++.|. +.+.|.+||
T Consensus 77 Pt~~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 77 PTFKYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred cEEEEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 999999999999999999 999998875
No 37
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.86 E-value=7.1e-21 Score=115.15 Aligned_cols=92 Identities=20% Similarity=0.415 Sum_probs=80.6
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC---CeEEEEEECCCChhhhc-CCccccEEEEEeC
Q 032967 32 SDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP---KLSFIYADIDECPETTQ-HIRYTPTFHFYRD 107 (130)
Q Consensus 32 ~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~---~v~~~~id~~~~~~~~~-~v~~~Pt~~~~~~ 107 (130)
+.++|++.+. ..+++++|+||++||++|+.+.|.+.++++.++ ++.++.+|+++++.... ++.++||+++|.+
T Consensus 6 ~~~~f~~~i~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~~~~ 82 (104)
T cd02995 6 VGKNFDEVVL---DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILFFPA 82 (104)
T ss_pred chhhhHHHHh---CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEEEcC
Confidence 6789999985 567999999999999999999999999999876 49999999998754333 8899999999999
Q ss_pred Ce--EEEEeeCC-CHHHHHHHH
Q 032967 108 GE--RVDEMFGA-GEERLHDRL 126 (130)
Q Consensus 108 g~--~~~~~~g~-~~~~l~~~l 126 (130)
|+ ...++.|. +.++|.+||
T Consensus 83 ~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 83 GDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCcCCceEccCCcCHHHHHhhC
Confidence 87 67789999 999998875
No 38
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.86 E-value=1.3e-20 Score=128.05 Aligned_cols=104 Identities=18% Similarity=0.331 Sum_probs=89.5
Q ss_pred CceeeccChHHHHHHHHHhh-cCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCChhhhc--CCcccc
Q 032967 25 GHLKTASSDQNHKDILLQIK-SSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIRYTP 100 (130)
Q Consensus 25 ~~~~~i~~~~~~~~~i~~~~-~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~~~~~~--~v~~~P 100 (130)
..+..+ +.++|++.+.... ..+++++|+||++||++|+.+.|.+++++++++ .+.++.+|+++++.++. +|.++|
T Consensus 30 ~~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~P 108 (224)
T PTZ00443 30 NALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYP 108 (224)
T ss_pred CCcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCC
Confidence 345555 7889999885110 136899999999999999999999999999998 59999999999999987 999999
Q ss_pred EEEEEeCCeEEEEeeCC-CHHHHHHHHhhc
Q 032967 101 TFHFYRDGERVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 101 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 129 (130)
|+++|++|+.+....|. +.++|.+|+.+.
T Consensus 109 Tl~~f~~G~~v~~~~G~~s~e~L~~fi~~~ 138 (224)
T PTZ00443 109 TLLLFDKGKMYQYEGGDRSTEKLAAFALGD 138 (224)
T ss_pred EEEEEECCEEEEeeCCCCCHHHHHHHHHHH
Confidence 99999999988888887 999999998753
No 39
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.85 E-value=3.6e-20 Score=115.53 Aligned_cols=92 Identities=21% Similarity=0.248 Sum_probs=78.4
Q ss_pred cChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCCh-----------hhhc-----
Q 032967 31 SSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECP-----------ETTQ----- 94 (130)
Q Consensus 31 ~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~-----------~~~~----- 94 (130)
.+..+|.+.+. +++.++|+|+++||++|+.+.|.+.+++++. ++.++.+|++.++ ++..
T Consensus 11 it~~~~~~~i~----~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 11 TTVVRALEALD----KKETATFFIGRKTCPYCRKFSGTLSGVVAQT-KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred cCHHHHHHHHH----cCCcEEEEEECCCChhHHHHhHHHHHHHHhc-CCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 36788999995 7889999999999999999999999999884 6889999998654 1111
Q ss_pred -CCccccEEEEEeCCeEEEEeeCC--CHHHHHHHHh
Q 032967 95 -HIRYTPTFHFYRDGERVDEMFGA--GEERLHDRLW 127 (130)
Q Consensus 95 -~v~~~Pt~~~~~~g~~~~~~~g~--~~~~l~~~l~ 127 (130)
++.++|||++|++|+.+.++.|. +.++|.+++.
T Consensus 86 ~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 86 TSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred ccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 46779999999999999999995 7999998874
No 40
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.85 E-value=2.9e-20 Score=118.81 Aligned_cols=93 Identities=22% Similarity=0.474 Sum_probs=79.1
Q ss_pred hHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCC--hhhhc--CCccccEEEEEe-
Q 032967 33 DQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDEC--PETTQ--HIRYTPTFHFYR- 106 (130)
Q Consensus 33 ~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~--~~~~~--~v~~~Pt~~~~~- 106 (130)
..+|++.+ .+++++||+||++||++|+.+.|.+.++++.+. .+.|+.||++.. ..++. +|.++||+++|.
T Consensus 10 ~~~~~~a~----~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~ 85 (142)
T cd02950 10 STPPEVAL----SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDR 85 (142)
T ss_pred cCCHHHHH----hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECC
Confidence 34566666 488999999999999999999999999999987 588888888864 34444 999999999994
Q ss_pred CCeEEEEeeCC-CHHHHHHHHhhc
Q 032967 107 DGERVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 107 ~g~~~~~~~g~-~~~~l~~~l~~~ 129 (130)
+|+.+.++.|. +.++|.++|.+.
T Consensus 86 ~G~~v~~~~G~~~~~~l~~~l~~l 109 (142)
T cd02950 86 EGNEEGQSIGLQPKQVLAQNLDAL 109 (142)
T ss_pred CCCEEEEEeCCCCHHHHHHHHHHH
Confidence 89999999999 889999888753
No 41
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.84 E-value=5.1e-20 Score=122.85 Aligned_cols=104 Identities=19% Similarity=0.274 Sum_probs=87.4
Q ss_pred CCCCceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc-CCcccc
Q 032967 22 NHHGHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ-HIRYTP 100 (130)
Q Consensus 22 ~~~~~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~-~v~~~P 100 (130)
...+.+..+ +..+|.+.+.. .+++.++||+||++||++|+.+.|.|++++.+|+.++|++||++.+ ... ++.++|
T Consensus 79 ~~~G~v~ei-s~~~f~~eV~~-as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~--~~~~~i~~lP 154 (192)
T cd02988 79 SKFGEVYEI-SKPDYVREVTE-ASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC--IPNYPDKNLP 154 (192)
T ss_pred CCCCeEEEe-CHHHHHHHHHh-cCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh--HhhCCCCCCC
Confidence 357888888 57888877751 1234689999999999999999999999999999999999999865 223 999999
Q ss_pred EEEEEeCCeEEEEeeCC--------CHHHHHHHHhhc
Q 032967 101 TFHFYRDGERVDEMFGA--------GEERLHDRLWLH 129 (130)
Q Consensus 101 t~~~~~~g~~~~~~~g~--------~~~~l~~~l~~~ 129 (130)
|+++|++|+.+.++.|. +.++|..+|.++
T Consensus 155 Tlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~ 191 (192)
T cd02988 155 TILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQV 191 (192)
T ss_pred EEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence 99999999999988873 678888888765
No 42
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.84 E-value=1.4e-20 Score=114.25 Aligned_cols=90 Identities=16% Similarity=0.283 Sum_probs=77.3
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHH---HHHHhhCC-CeEEEEEECCCC----hhhhc--CCccccEEE
Q 032967 34 QNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAF---CKLSNNFP-KLSFIYADIDEC----PETTQ--HIRYTPTFH 103 (130)
Q Consensus 34 ~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~---~~l~~~~~-~v~~~~id~~~~----~~~~~--~v~~~Pt~~ 103 (130)
++|.+.+. +++++||+||++||++|+.+.+.+ .++++.+. ++.++.+|++.+ +.++. ++.++||++
T Consensus 2 ~~~~~~~~----~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 2 AALAQALA----QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred HHHHHHHH----cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 46777764 889999999999999999999988 67887777 799999999874 44554 999999999
Q ss_pred EEe--CCeEEEEeeCC-CHHHHHHHHh
Q 032967 104 FYR--DGERVDEMFGA-GEERLHDRLW 127 (130)
Q Consensus 104 ~~~--~g~~~~~~~g~-~~~~l~~~l~ 127 (130)
+|+ +|+.+.++.|. +.++|.++|.
T Consensus 78 ~~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 78 FYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred EECCCCCCCCcccccccCHHHHHHHhC
Confidence 998 78999999999 9999998874
No 43
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.84 E-value=4.4e-20 Score=112.17 Aligned_cols=90 Identities=14% Similarity=0.297 Sum_probs=77.6
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC----CeEEEEEECCCChhhhc--CCccccEEEEEeC
Q 032967 34 QNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP----KLSFIYADIDECPETTQ--HIRYTPTFHFYRD 107 (130)
Q Consensus 34 ~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~----~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~ 107 (130)
++|++.. ++++++|.||++||++|+.+.|.++++++.++ ++.+..+|++.++.++. +|.++||+++|++
T Consensus 7 ~~~~~~~-----~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~ 81 (104)
T cd03000 7 DSFKDVR-----KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKG 81 (104)
T ss_pred hhhhhhc-----cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcC
Confidence 5566532 56799999999999999999999999998873 49999999999999876 9999999999987
Q ss_pred CeEEEEeeCC-CHHHHHHHHhhc
Q 032967 108 GERVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 108 g~~~~~~~g~-~~~~l~~~l~~~ 129 (130)
| ...++.|. +.++|.+++++-
T Consensus 82 ~-~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 82 D-LAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred C-CceeecCCCCHHHHHHHHHhh
Confidence 7 45678898 999999999863
No 44
>PTZ00062 glutaredoxin; Provisional
Probab=99.84 E-value=6.3e-20 Score=123.00 Aligned_cols=90 Identities=16% Similarity=0.235 Sum_probs=82.5
Q ss_pred cChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhcCCccccEEEEEeCCeE
Q 032967 31 SSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQHIRYTPTFHFYRDGER 110 (130)
Q Consensus 31 ~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~~v~~~Pt~~~~~~g~~ 110 (130)
.+.+++.+.+. ++.+.++++|||+||++|+.+.|++.+++++|+++.|+.||.+ .+|.++|||++|++|+.
T Consensus 4 ~~~ee~~~~i~---~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d------~~V~~vPtfv~~~~g~~ 74 (204)
T PTZ00062 4 IKKEEKDKLIE---SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA------DANNEYGVFEFYQNSQL 74 (204)
T ss_pred CCHHHHHHHHh---cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc------cCcccceEEEEEECCEE
Confidence 46788999985 3448899999999999999999999999999999999999987 69999999999999999
Q ss_pred EEEeeCCCHHHHHHHHhhc
Q 032967 111 VDEMFGAGEERLHDRLWLH 129 (130)
Q Consensus 111 ~~~~~g~~~~~l~~~l~~~ 129 (130)
+.|+.|.++.+|..++.++
T Consensus 75 i~r~~G~~~~~~~~~~~~~ 93 (204)
T PTZ00062 75 INSLEGCNTSTLVSFIRGW 93 (204)
T ss_pred EeeeeCCCHHHHHHHHHHH
Confidence 9999999999999988765
No 45
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.1e-20 Score=139.24 Aligned_cols=121 Identities=20% Similarity=0.333 Sum_probs=105.9
Q ss_pred CCCCCCcccCCCCcCCCCCC-CceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC---CeE
Q 032967 5 FDGEKPKKDLEGMMDLNNHH-GHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP---KLS 80 (130)
Q Consensus 5 ~~~~~~~~~l~~~~~~~~~~-~~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~---~v~ 80 (130)
+...+....+.|+.+|.++. .+++.+ -..+|++++. ..++-+||.||||||+||+++.|.|++|++.|+ ++.
T Consensus 345 ~l~Gk~~p~~kSqpiPe~~~~~pVkvv-Vgknfd~iv~---de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vv 420 (493)
T KOG0190|consen 345 FLDGKVKPHLKSQPIPEDNDRSPVKVV-VGKNFDDIVL---DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVV 420 (493)
T ss_pred HhcCccccccccCCCCcccccCCeEEE-eecCHHHHhh---ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcE
Confidence 45678888899999999888 456655 5799999995 899999999999999999999999999999997 699
Q ss_pred EEEEECCCChhhhcCCccccEEEEEeCCe--EEEEeeCC-CHHHHHHHHhhc
Q 032967 81 FIYADIDECPETTQHIRYTPTFHFYRDGE--RVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 81 ~~~id~~~~~~~~~~v~~~Pt~~~~~~g~--~~~~~~g~-~~~~l~~~l~~~ 129 (130)
+.++|.+.|+.-...+.++||+.+++.|. ....|.|. +.++|..++.++
T Consensus 421 iAKmDaTaNd~~~~~~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~ 472 (493)
T KOG0190|consen 421 IAKMDATANDVPSLKVDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKS 472 (493)
T ss_pred EEEeccccccCccccccccceEEEecCCCCCCCcccCCCcchHHHHhhhccC
Confidence 99999998877665888899999999886 46678888 999999999875
No 46
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.84 E-value=5.4e-20 Score=111.36 Aligned_cols=95 Identities=23% Similarity=0.450 Sum_probs=82.8
Q ss_pred eeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC---CeEEEEEECCC-Chhhhc--CCccccE
Q 032967 28 KTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP---KLSFIYADIDE-CPETTQ--HIRYTPT 101 (130)
Q Consensus 28 ~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~---~v~~~~id~~~-~~~~~~--~v~~~Pt 101 (130)
..+ +.++|++.+. +++++++++||++||++|+.+.|.+.++++.++ ++.++.+|++. ++.++. +|.++|+
T Consensus 3 ~~l-~~~~~~~~~~---~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~ 78 (105)
T cd02998 3 VEL-TDSNFDKVVG---DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPT 78 (105)
T ss_pred EEc-chhcHHHHhc---CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCE
Confidence 344 5688988874 567799999999999999999999999998875 59999999999 888887 9999999
Q ss_pred EEEEeCC-eEEEEeeCC-CHHHHHHHH
Q 032967 102 FHFYRDG-ERVDEMFGA-GEERLHDRL 126 (130)
Q Consensus 102 ~~~~~~g-~~~~~~~g~-~~~~l~~~l 126 (130)
+++|.+| +....+.|. +.++|.+||
T Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 79 LKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEEeCCCCCccccCCccCHHHHHhhC
Confidence 9999877 567788898 999998875
No 47
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.83 E-value=1.3e-19 Score=111.03 Aligned_cols=98 Identities=13% Similarity=0.247 Sum_probs=80.8
Q ss_pred eeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCC-Chhhhc---CCcccc
Q 032967 27 LKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDE-CPETTQ---HIRYTP 100 (130)
Q Consensus 27 ~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~-~~~~~~---~v~~~P 100 (130)
++.+ +.++|+.++.. ..++++++|.||++||++|+++.|.+.++++.++ ++.++.||++. ...++. ++.++|
T Consensus 3 v~~~-~~~~~~~~~~~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~P 80 (109)
T cd02993 3 VVTL-SRAEIEALAKG-ERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFP 80 (109)
T ss_pred ceec-cHHHHHHHHhh-hhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCC
Confidence 4445 56799988741 2467999999999999999999999999999987 49999999997 466542 899999
Q ss_pred EEEEEeCCe-EEEEeeC-C-CHHHHHHHH
Q 032967 101 TFHFYRDGE-RVDEMFG-A-GEERLHDRL 126 (130)
Q Consensus 101 t~~~~~~g~-~~~~~~g-~-~~~~l~~~l 126 (130)
|+++|.+|. ....|.| . +.+.|..||
T Consensus 81 ti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 81 TILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999997764 6778888 4 899998875
No 48
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.83 E-value=9.2e-20 Score=112.36 Aligned_cols=84 Identities=20% Similarity=0.252 Sum_probs=74.8
Q ss_pred cCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc--CCccccEEEEEeCCeEEE--EeeCC-CH
Q 032967 45 SSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRDGERVD--EMFGA-GE 119 (130)
Q Consensus 45 ~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g~~~~--~~~g~-~~ 119 (130)
.++..++|+||++||++|+.+.|.+++++..++.+.+..+|++++++++. +|.++||+++|++|+... ++.|. +.
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~ 99 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAG 99 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCch
Confidence 36778999999999999999999999999888889999999999999987 999999999999876544 78899 88
Q ss_pred HHHHHHHhh
Q 032967 120 ERLHDRLWL 128 (130)
Q Consensus 120 ~~l~~~l~~ 128 (130)
.+|.++|..
T Consensus 100 ~el~~~i~~ 108 (113)
T cd02975 100 YEFASLIED 108 (113)
T ss_pred HHHHHHHHH
Confidence 898888763
No 49
>PTZ00102 disulphide isomerase; Provisional
Probab=99.83 E-value=1.8e-19 Score=134.59 Aligned_cols=119 Identities=18% Similarity=0.329 Sum_probs=99.8
Q ss_pred CCCCcccCCCCcCCCCCCCceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC---CeEEEE
Q 032967 7 GEKPKKDLEGMMDLNNHHGHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP---KLSFIY 83 (130)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~---~v~~~~ 83 (130)
.++....+.+...|......+..+ +..+|++.+. .++++++|.|||+||++|+.+.|.++++++.++ .+.++.
T Consensus 339 ~gk~~~~~~se~~p~~~~~~v~~l-~~~~f~~~v~---~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~ 414 (477)
T PTZ00102 339 AGKVEKSIKSEPIPEEQDGPVKVV-VGNTFEEIVF---KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAK 414 (477)
T ss_pred CCCCCcccccCCCCCCCCCCeEEe-cccchHHHHh---cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEE
Confidence 345556666666666666666666 5799999974 688999999999999999999999999998876 489999
Q ss_pred EECCCChhhhc--CCccccEEEEEeCCeEE-EEeeCC-CHHHHHHHHhhc
Q 032967 84 ADIDECPETTQ--HIRYTPTFHFYRDGERV-DEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 84 id~~~~~~~~~--~v~~~Pt~~~~~~g~~~-~~~~g~-~~~~l~~~l~~~ 129 (130)
+|++.++..+. ++.++||+++|++|+.+ .++.|. +.+.|.++|+++
T Consensus 415 id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~ 464 (477)
T PTZ00102 415 MNGTANETPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKH 464 (477)
T ss_pred EECCCCccchhcCCCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHc
Confidence 99999888765 89999999999988754 589999 999999999876
No 50
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.83 E-value=1.3e-19 Score=108.34 Aligned_cols=91 Identities=21% Similarity=0.453 Sum_probs=82.0
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhC---CCeEEEEEECCCChhhhc--CCccccEEEEEe
Q 032967 32 SDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNF---PKLSFIYADIDECPETTQ--HIRYTPTFHFYR 106 (130)
Q Consensus 32 ~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~---~~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~ 106 (130)
+..+|.+.+. ++++++|+||++||++|+.+.|.+.++++.+ .++.++.+|+++++.++. +|.++||++++.
T Consensus 4 ~~~~~~~~i~----~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02961 4 TDDNFDELVK----DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFP 79 (101)
T ss_pred cHHHHHHHHh----CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEc
Confidence 5678999985 5569999999999999999999999999888 379999999999899887 999999999998
Q ss_pred CC-eEEEEeeCC-CHHHHHHHH
Q 032967 107 DG-ERVDEMFGA-GEERLHDRL 126 (130)
Q Consensus 107 ~g-~~~~~~~g~-~~~~l~~~l 126 (130)
+| ....++.|. +.++|.+|+
T Consensus 80 ~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 80 NGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCCcccccCCCCcCHHHHHhhC
Confidence 88 788899998 899998875
No 51
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.82 E-value=7.3e-19 Score=103.36 Aligned_cols=89 Identities=36% Similarity=0.792 Sum_probs=80.5
Q ss_pred HHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc--CCccccEEEEEeCCeEEE
Q 032967 35 NHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRDGERVD 112 (130)
Q Consensus 35 ~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g~~~~ 112 (130)
+|.+.+. .+++++|+||++||+.|+.+.+.+.++++..+++.++.+|++..+.++. ++.++|+++++.+|+.+.
T Consensus 2 ~~~~~~~----~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 2 EFEELIK----SAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVD 77 (93)
T ss_pred chHHHHh----cCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEE
Confidence 5677774 4599999999999999999999999999887799999999999888877 999999999999999999
Q ss_pred EeeCC-CHHHHHHHHh
Q 032967 113 EMFGA-GEERLHDRLW 127 (130)
Q Consensus 113 ~~~g~-~~~~l~~~l~ 127 (130)
.+.|. +.++|.++|+
T Consensus 78 ~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 78 RVVGADPKEELEEFLE 93 (93)
T ss_pred EEecCCCHHHHHHHhC
Confidence 99999 8899998874
No 52
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.79 E-value=2.6e-18 Score=107.50 Aligned_cols=92 Identities=16% Similarity=0.369 Sum_probs=73.9
Q ss_pred HHHHHHHHHhhcCC-CcEEEEEeCCCCHhHHhhHHHHH---HHHhhCC-CeEEEEEECCCC-------------hhhhc-
Q 032967 34 QNHKDILLQIKSSK-IPAVINYGASWCGVCNQILPAFC---KLSNNFP-KLSFIYADIDEC-------------PETTQ- 94 (130)
Q Consensus 34 ~~~~~~i~~~~~~~-~~~lv~f~s~~C~~C~~~~~~~~---~l~~~~~-~v~~~~id~~~~-------------~~~~~- 94 (130)
+++++.+ .++ ++++|.||++||++|+.+.|.+. .+.+.+. ++.++.+|++.. ..++.
T Consensus 4 ~~~~~a~----~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~ 79 (125)
T cd02951 4 EDLAEAA----ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARK 79 (125)
T ss_pred HHHHHHH----HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHH
Confidence 3444444 577 99999999999999999999874 5555554 688999999865 45554
Q ss_pred -CCccccEEEEEeC--CeEEEEeeCC-CHHHHHHHHhhc
Q 032967 95 -HIRYTPTFHFYRD--GERVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 95 -~v~~~Pt~~~~~~--g~~~~~~~g~-~~~~l~~~l~~~ 129 (130)
++.++||++++.+ |+.+.++.|. +.+++.++|++.
T Consensus 80 ~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~ 118 (125)
T cd02951 80 YRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYV 118 (125)
T ss_pred cCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHH
Confidence 8999999999975 5899999999 889999888763
No 53
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.79 E-value=2.9e-18 Score=106.05 Aligned_cols=96 Identities=18% Similarity=0.278 Sum_probs=75.7
Q ss_pred eccChHHHHHHHHHhhcCCCcEEEEEeC-------CCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCC-------hhhh
Q 032967 29 TASSDQNHKDILLQIKSSKIPAVINYGA-------SWCGVCNQILPAFCKLSNNFP-KLSFIYADIDEC-------PETT 93 (130)
Q Consensus 29 ~i~~~~~~~~~i~~~~~~~~~~lv~f~s-------~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~-------~~~~ 93 (130)
.+.+.++|.+.+. ..++++++|.||| +||++|+.+.|.+++++.+++ ++.|++||+++. .++.
T Consensus 5 ~~~~~~~f~~~i~--~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~ 82 (119)
T cd02952 5 AVRGYEEFLKLLK--SHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFR 82 (119)
T ss_pred cccCHHHHHHHHH--hcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhH
Confidence 4668899999996 3457899999999 999999999999999999998 799999999864 3555
Q ss_pred c--CCc-cccEEEEEeCCeEEEEeeCCCHHHHHHHH
Q 032967 94 Q--HIR-YTPTFHFYRDGERVDEMFGAGEERLHDRL 126 (130)
Q Consensus 94 ~--~v~-~~Pt~~~~~~g~~~~~~~g~~~~~l~~~l 126 (130)
. +|. ++||+++|++|+.+....-.+...+..++
T Consensus 83 ~~~~I~~~iPT~~~~~~~~~l~~~~c~~~~~~~~~~ 118 (119)
T cd02952 83 TDPKLTTGVPTLLRWKTPQRLVEDECLQADLVEMFF 118 (119)
T ss_pred hccCcccCCCEEEEEcCCceecchhhcCHHHHHHhh
Confidence 4 888 99999999888654322222455554443
No 54
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=9e-19 Score=129.28 Aligned_cols=101 Identities=18% Similarity=0.410 Sum_probs=91.0
Q ss_pred CCceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC----CeEEEEEECCCChhhhc--CCc
Q 032967 24 HGHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP----KLSFIYADIDECPETTQ--HIR 97 (130)
Q Consensus 24 ~~~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~----~v~~~~id~~~~~~~~~--~v~ 97 (130)
...+..+ +.++|++.|. .+..++|.||||||++|+.+.|.+++.+..+. .+..++||++++.+++. .|+
T Consensus 24 ~~~Vl~L-t~dnf~~~i~----~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~ 98 (493)
T KOG0190|consen 24 EEDVLVL-TKDNFKETIN----GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVR 98 (493)
T ss_pred ccceEEE-ecccHHHHhc----cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCC
Confidence 3444554 7899999995 88999999999999999999999999988875 59999999999999988 999
Q ss_pred cccEEEEEeCCeEEEEeeCC-CHHHHHHHHhhc
Q 032967 98 YTPTFHFYRDGERVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 98 ~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 129 (130)
++||+.+|++|.....|.|. ..+.|..|+.+.
T Consensus 99 gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq 131 (493)
T KOG0190|consen 99 GYPTLKIFRNGRSAQDYNGPREADGIVKWLKKQ 131 (493)
T ss_pred CCCeEEEEecCCcceeccCcccHHHHHHHHHhc
Confidence 99999999999988889999 999999999875
No 55
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.78 E-value=6.1e-18 Score=104.38 Aligned_cols=79 Identities=20% Similarity=0.384 Sum_probs=67.6
Q ss_pred eeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC----CeEEEEEECC--CChhhhc--CCcc
Q 032967 27 LKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP----KLSFIYADID--ECPETTQ--HIRY 98 (130)
Q Consensus 27 ~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~----~v~~~~id~~--~~~~~~~--~v~~ 98 (130)
+.++ +.++|.+.+. +.+++++|.||++||++|+.+.|.|+++++.++ .+.+..+|++ .++.++. ++.+
T Consensus 3 v~~l-~~~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~ 78 (114)
T cd02992 3 VIVL-DAASFNSALL---GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTG 78 (114)
T ss_pred eEEC-CHHhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCC
Confidence 4455 6789999996 566899999999999999999999999998775 3899999986 4566765 9999
Q ss_pred ccEEEEEeCCe
Q 032967 99 TPTFHFYRDGE 109 (130)
Q Consensus 99 ~Pt~~~~~~g~ 109 (130)
+||+++|++|.
T Consensus 79 ~Pt~~lf~~~~ 89 (114)
T cd02992 79 YPTLRYFPPFS 89 (114)
T ss_pred CCEEEEECCCC
Confidence 99999999887
No 56
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.77 E-value=8.5e-18 Score=124.85 Aligned_cols=119 Identities=19% Similarity=0.332 Sum_probs=97.7
Q ss_pred CCCCcccCCCCcCCCCCCCceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC----CeEEE
Q 032967 7 GEKPKKDLEGMMDLNNHHGHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP----KLSFI 82 (130)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~----~v~~~ 82 (130)
+++......+...|....+.+..+ +..+|.+.+. +.++++||+||++||++|+.+.|.++++++.++ ++.|+
T Consensus 328 ~g~~~~~~~se~~p~~~~~~v~~l-~~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~ 403 (462)
T TIGR01130 328 DGKLKPYLKSEPIPEDDEGPVKVL-VGKNFDEIVL---DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIA 403 (462)
T ss_pred cCCCCeeeccCCCCccCCCccEEe-eCcCHHHHhc---cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEE
Confidence 344555566666776655666665 5799999984 688999999999999999999999999999886 48999
Q ss_pred EEECCCChhhhcCCccccEEEEEeCCeE--EEEeeCC-CHHHHHHHHhhc
Q 032967 83 YADIDECPETTQHIRYTPTFHFYRDGER--VDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 83 ~id~~~~~~~~~~v~~~Pt~~~~~~g~~--~~~~~g~-~~~~l~~~l~~~ 129 (130)
.+|++.+.....++.++||+++|++|.. ...+.|. +.+.|.+||.++
T Consensus 404 ~id~~~n~~~~~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 404 KMDATANDVPPFEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKH 453 (462)
T ss_pred EEECCCCccCCCCccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhc
Confidence 9999976543358999999999998875 3678888 999999999875
No 57
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.77 E-value=8.4e-18 Score=124.86 Aligned_cols=98 Identities=20% Similarity=0.447 Sum_probs=87.1
Q ss_pred eeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC----CeEEEEEECCCChhhhc--CCcccc
Q 032967 27 LKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP----KLSFIYADIDECPETTQ--HIRYTP 100 (130)
Q Consensus 27 ~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~----~v~~~~id~~~~~~~~~--~v~~~P 100 (130)
+..+ +.++|++.+. ++++++|.|||+||++|+.+.|.+.++++.+. ++.|+.|||+.++.++. +|.++|
T Consensus 3 v~~l-~~~~~~~~i~----~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 77 (462)
T TIGR01130 3 VLVL-TKDNFDDFIK----SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYP 77 (462)
T ss_pred ceEC-CHHHHHHHHh----cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCcccc
Confidence 3344 6789999985 67899999999999999999999999887764 49999999999999987 999999
Q ss_pred EEEEEeCCeE-EEEeeCC-CHHHHHHHHhhc
Q 032967 101 TFHFYRDGER-VDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 101 t~~~~~~g~~-~~~~~g~-~~~~l~~~l~~~ 129 (130)
|+++|++|+. +.++.|. +.+.|.+|+.+.
T Consensus 78 t~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~ 108 (462)
T TIGR01130 78 TLKIFRNGEDSVSDYNGPRDADGIVKYMKKQ 108 (462)
T ss_pred EEEEEeCCccceeEecCCCCHHHHHHHHHHh
Confidence 9999999987 7899999 999999999764
No 58
>PTZ00102 disulphide isomerase; Provisional
Probab=99.77 E-value=1.3e-17 Score=124.69 Aligned_cols=98 Identities=20% Similarity=0.433 Sum_probs=86.9
Q ss_pred ceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC----CeEEEEEECCCChhhhc--CCccc
Q 032967 26 HLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP----KLSFIYADIDECPETTQ--HIRYT 99 (130)
Q Consensus 26 ~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~----~v~~~~id~~~~~~~~~--~v~~~ 99 (130)
.+..+ +.++|++.+. ++++++|.||++||++|+++.|.+.+++..+. ++.++.+|++.+..++. +|.++
T Consensus 33 ~v~~l-~~~~f~~~i~----~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~ 107 (477)
T PTZ00102 33 HVTVL-TDSTFDKFIT----ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGY 107 (477)
T ss_pred CcEEc-chhhHHHHHh----cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcc
Confidence 44455 6789999985 67899999999999999999999999886653 59999999999999987 99999
Q ss_pred cEEEEEeCCeEEEEeeCC-CHHHHHHHHhhc
Q 032967 100 PTFHFYRDGERVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 100 Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 129 (130)
||+++|++|+.+ ++.|. +.+.|.+|+.+.
T Consensus 108 Pt~~~~~~g~~~-~y~g~~~~~~l~~~l~~~ 137 (477)
T PTZ00102 108 PTIKFFNKGNPV-NYSGGRTADGIVSWIKKL 137 (477)
T ss_pred cEEEEEECCceE-EecCCCCHHHHHHHHHHh
Confidence 999999999877 89999 999999999875
No 59
>PLN02309 5'-adenylylsulfate reductase
Probab=99.76 E-value=2.5e-17 Score=121.83 Aligned_cols=103 Identities=15% Similarity=0.235 Sum_probs=85.9
Q ss_pred CceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECC-CChhhhc---CCcc
Q 032967 25 GHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADID-ECPETTQ---HIRY 98 (130)
Q Consensus 25 ~~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~-~~~~~~~---~v~~ 98 (130)
..++.+ +.++|++.+.. .+.++++||+||++||++|+.+.|.|+++++.+. ++.|+++|++ .+..++. +|.+
T Consensus 345 ~~Vv~L-t~~nfe~ll~~-~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~ 422 (457)
T PLN02309 345 QNVVAL-SRAGIENLLKL-ENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS 422 (457)
T ss_pred CCcEEC-CHHHHHHHHHh-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCce
Confidence 355555 67899998842 2578999999999999999999999999999986 5999999999 7677763 9999
Q ss_pred ccEEEEEeCCe-EEEEeeC-C-CHHHHHHHHhhc
Q 032967 99 TPTFHFYRDGE-RVDEMFG-A-GEERLHDRLWLH 129 (130)
Q Consensus 99 ~Pt~~~~~~g~-~~~~~~g-~-~~~~l~~~l~~~ 129 (130)
+||+++|++|. ....|.| . +.+.|..||+..
T Consensus 423 ~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 423 FPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 99999998886 4456764 5 999999999853
No 60
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.75 E-value=3.3e-17 Score=121.25 Aligned_cols=103 Identities=17% Similarity=0.247 Sum_probs=84.0
Q ss_pred CCceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCCh-hhh-c--CCc
Q 032967 24 HGHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDECP-ETT-Q--HIR 97 (130)
Q Consensus 24 ~~~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~-~~~-~--~v~ 97 (130)
...+.++ +..+|++.+.. ...++++||.||++||++|+.+.|.|++++++++ ++.|+.||++.+. .++ . +|.
T Consensus 350 ~~~Vv~L-~~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~ 427 (463)
T TIGR00424 350 SNNVVSL-SRPGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG 427 (463)
T ss_pred CCCeEEC-CHHHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCC
Confidence 3355555 67899999831 2578999999999999999999999999999987 4899999999764 343 2 999
Q ss_pred cccEEEEEeCCe-EEEEee-CC-CHHHHHHHHhh
Q 032967 98 YTPTFHFYRDGE-RVDEMF-GA-GEERLHDRLWL 128 (130)
Q Consensus 98 ~~Pt~~~~~~g~-~~~~~~-g~-~~~~l~~~l~~ 128 (130)
++||+++|++|. ....|. |. +.+.|..||+-
T Consensus 428 ~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 428 SFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred ccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 999999999986 445676 45 99999999874
No 61
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.74 E-value=4e-17 Score=124.37 Aligned_cols=106 Identities=15% Similarity=0.283 Sum_probs=90.2
Q ss_pred CCceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHH---HHHHhhCCCeEEEEEECCCCh----hhhc--
Q 032967 24 HGHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAF---CKLSNNFPKLSFIYADIDECP----ETTQ-- 94 (130)
Q Consensus 24 ~~~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~---~~l~~~~~~v~~~~id~~~~~----~~~~-- 94 (130)
...+..+.+.+++++.++.+..++++++|+||++||++|+.+.+.. .++.+.++++.++++|+++++ ++..
T Consensus 451 ~~~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~ 530 (571)
T PRK00293 451 HLNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHY 530 (571)
T ss_pred CCCceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHc
Confidence 4467788899999999987767789999999999999999998875 678888888999999998653 3433
Q ss_pred CCccccEEEEEe-CCeE--EEEeeCC-CHHHHHHHHhhc
Q 032967 95 HIRYTPTFHFYR-DGER--VDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 95 ~v~~~Pt~~~~~-~g~~--~~~~~g~-~~~~l~~~l~~~ 129 (130)
++.++||+++|+ +|++ ..++.|. +.+++.++|++.
T Consensus 531 ~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 531 NVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 999999999996 7887 4688999 999999999875
No 62
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.72 E-value=5.5e-17 Score=99.70 Aligned_cols=92 Identities=9% Similarity=0.103 Sum_probs=76.9
Q ss_pred cChHHHHHHHHHhhcCCCcEEEEEeC--CCCH---hHHhhHHHHHHHHhhCCCeEEEEEEC-----CCChhhhc--CCc-
Q 032967 31 SSDQNHKDILLQIKSSKIPAVINYGA--SWCG---VCNQILPAFCKLSNNFPKLSFIYADI-----DECPETTQ--HIR- 97 (130)
Q Consensus 31 ~~~~~~~~~i~~~~~~~~~~lv~f~s--~~C~---~C~~~~~~~~~l~~~~~~v~~~~id~-----~~~~~~~~--~v~- 97 (130)
.+..+|++.+. +.+.+||.||+ |||+ +|..+.|.+.+-+. .|.+.+||| .++.+++. +|.
T Consensus 6 L~~~nF~~~v~----~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~---~v~lakVd~~d~~~~~~~~L~~~y~I~~ 78 (116)
T cd03007 6 LDTVTFYKVIP----KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD---DLLVAEVGIKDYGEKLNMELGERYKLDK 78 (116)
T ss_pred CChhhHHHHHh----cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC---ceEEEEEecccccchhhHHHHHHhCCCc
Confidence 37899999995 78999999999 9999 78777777766554 388999999 45677877 998
Q ss_pred -cccEEEEEeCCe--EEEEeeC-C-CHHHHHHHHhhc
Q 032967 98 -YTPTFHFYRDGE--RVDEMFG-A-GEERLHDRLWLH 129 (130)
Q Consensus 98 -~~Pt~~~~~~g~--~~~~~~g-~-~~~~l~~~l~~~ 129 (130)
++||+.+|++|. ....|.| . +.+.|.+||+++
T Consensus 79 ~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 79 ESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999999995 4567888 3 999999999875
No 63
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.72 E-value=1.8e-17 Score=102.69 Aligned_cols=93 Identities=18% Similarity=0.347 Sum_probs=67.9
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCChh-h-hc-CCcc--ccEEEEEe-
Q 032967 34 QNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPE-T-TQ-HIRY--TPTFHFYR- 106 (130)
Q Consensus 34 ~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~~~-~-~~-~v~~--~Pt~~~~~- 106 (130)
.++++.+..+..+++++||.||++||++|+.+.|.+.+...... +..|+.+|++.++. . .. ++.+ +||++++.
T Consensus 6 ~~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~ 85 (117)
T cd02959 6 VTLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDP 85 (117)
T ss_pred eeHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECC
Confidence 45777777777899999999999999999999999988766443 45677777775542 2 22 6655 99999995
Q ss_pred CCeEEEE---eeCC-CHHHHHHHH
Q 032967 107 DGERVDE---MFGA-GEERLHDRL 126 (130)
Q Consensus 107 ~g~~~~~---~~g~-~~~~l~~~l 126 (130)
+|+.+.+ ..|. +.+.+.+.|
T Consensus 86 ~Gk~~~~~~~~~~~~~~~~f~~~~ 109 (117)
T cd02959 86 SGDVHPEIINKKGNPNYKYFYSSA 109 (117)
T ss_pred CCCCchhhccCCCCccccccCCCH
Confidence 9988764 4454 555444433
No 64
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.71 E-value=2.1e-16 Score=91.72 Aligned_cols=76 Identities=17% Similarity=0.323 Sum_probs=67.3
Q ss_pred EEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCChhhhc--CCccccEEEEEeCCeEEEEeeCC-CHHHHHHH
Q 032967 50 AVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIRYTPTFHFYRDGERVDEMFGA-GEERLHDR 125 (130)
Q Consensus 50 ~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~ 125 (130)
.+..||++||++|+.+.|.++++++.++ ++.+..||+++++++.. ++.++||+++ +|+ .++.|. +.++|.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHHH
Confidence 4678999999999999999999999886 69999999999998877 9999999986 775 378898 99999999
Q ss_pred Hhhc
Q 032967 126 LWLH 129 (130)
Q Consensus 126 l~~~ 129 (130)
|++.
T Consensus 78 l~~~ 81 (82)
T TIGR00411 78 IKKR 81 (82)
T ss_pred HHhh
Confidence 8764
No 65
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.70 E-value=1.5e-16 Score=96.09 Aligned_cols=84 Identities=15% Similarity=0.163 Sum_probs=75.7
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCChhhhc--CCc--cccEEEEEeC--CeEEEEeeCC-
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIR--YTPTFHFYRD--GERVDEMFGA- 117 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~~~~~~--~v~--~~Pt~~~~~~--g~~~~~~~g~- 117 (130)
.++++++.|+++||++|..+.|.+++++++|+ ++.|+.+|+++++.++. ++. ++|+++++++ |+......|.
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~ 90 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEEL 90 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCcccc
Confidence 47899999999999999999999999999997 69999999999988887 888 9999999998 7666666676
Q ss_pred CHHHHHHHHhhc
Q 032967 118 GEERLHDRLWLH 129 (130)
Q Consensus 118 ~~~~l~~~l~~~ 129 (130)
+.+.|.+||++.
T Consensus 91 ~~~~l~~fi~~~ 102 (103)
T cd02982 91 TAESLEEFVEDF 102 (103)
T ss_pred CHHHHHHHHHhh
Confidence 899999999864
No 66
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.69 E-value=6.8e-16 Score=104.93 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=70.8
Q ss_pred CCCcEEEEEeC---CCCHhHHhhHHHHHHHHhhCCCe--EEEEEECCCChhhhc--CCccccEEEEEeCCeEE-EEeeCC
Q 032967 46 SKIPAVINYGA---SWCGVCNQILPAFCKLSNNFPKL--SFIYADIDECPETTQ--HIRYTPTFHFYRDGERV-DEMFGA 117 (130)
Q Consensus 46 ~~~~~lv~f~s---~~C~~C~~~~~~~~~l~~~~~~v--~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g~~~-~~~~g~ 117 (130)
++...++.|++ +||++|+.+.|.++++++.++++ .++.+|.+++++++. +|.++||+++|++|+.+ .++.|.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~ 97 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGI 97 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeec
Confidence 45556777888 99999999999999999999754 466666668898887 99999999999999987 499999
Q ss_pred -CHHHHHHHHhh
Q 032967 118 -GEERLHDRLWL 128 (130)
Q Consensus 118 -~~~~l~~~l~~ 128 (130)
+.+++.++|+.
T Consensus 98 ~~~~~l~~~i~~ 109 (215)
T TIGR02187 98 PAGYEFAALIED 109 (215)
T ss_pred CCHHHHHHHHHH
Confidence 88999888865
No 67
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.65 E-value=2.8e-15 Score=101.94 Aligned_cols=81 Identities=16% Similarity=0.206 Sum_probs=70.9
Q ss_pred CCCc-EEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc--CCccccEEEEEeCCeEEEEeeCC-CHHH
Q 032967 46 SKIP-AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRDGERVDEMFGA-GEER 121 (130)
Q Consensus 46 ~~~~-~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g~~~~~~~g~-~~~~ 121 (130)
.+++ .++.||++||++|+.+.+.+++++..++++.+..+|.+.+++++. +|.++||++++++|.. +.|. +.++
T Consensus 131 ~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~ 207 (215)
T TIGR02187 131 LDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQ 207 (215)
T ss_pred cCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCCHHH
Confidence 3444 555599999999999999999999888889999999999999887 9999999999988863 8899 8999
Q ss_pred HHHHHhhc
Q 032967 122 LHDRLWLH 129 (130)
Q Consensus 122 l~~~l~~~ 129 (130)
|.++|.++
T Consensus 208 l~~~l~~~ 215 (215)
T TIGR02187 208 FLEYILSA 215 (215)
T ss_pred HHHHHHhC
Confidence 99999763
No 68
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.65 E-value=3.1e-16 Score=109.10 Aligned_cols=84 Identities=15% Similarity=0.372 Sum_probs=74.2
Q ss_pred cCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCC----eEEEEEECCCChhhhc--CCccccEEEEEeCCeEEEEeeCC-
Q 032967 45 SSKIPAVINYGASWCGVCNQILPAFCKLSNNFPK----LSFIYADIDECPETTQ--HIRYTPTFHFYRDGERVDEMFGA- 117 (130)
Q Consensus 45 ~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~----v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g~~~~~~~g~- 117 (130)
..+..|+|.||+|||.+|+++.|.|.++...+++ +++.++|++..+.++. +|.|+||+.++++|..+. |.|.
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~d-YRG~R 119 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAID-YRGGR 119 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeee-cCCCc
Confidence 4678999999999999999999999999888773 8999999999999988 999999999999987655 5566
Q ss_pred CHHHHHHHHhhc
Q 032967 118 GEERLHDRLWLH 129 (130)
Q Consensus 118 ~~~~l~~~l~~~ 129 (130)
.++.|+++-.++
T Consensus 120 ~Kd~iieFAhR~ 131 (468)
T KOG4277|consen 120 EKDAIIEFAHRC 131 (468)
T ss_pred cHHHHHHHHHhc
Confidence 999999987654
No 69
>PHA02125 thioredoxin-like protein
Probab=99.65 E-value=2.7e-15 Score=85.98 Aligned_cols=69 Identities=29% Similarity=0.614 Sum_probs=59.4
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc--CCccccEEEEEeCCeEEEEeeCC--CHHHHHHHH
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRDGERVDEMFGA--GEERLHDRL 126 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g~~~~~~~g~--~~~~l~~~l 126 (130)
+++||++||++|+.+.|.++++. +.++.||.+++++++. +|.++||++ +|+.+.++.|. +..+|++.|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~~ 73 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEKL 73 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHHh
Confidence 78999999999999999998763 4678899999998877 999999988 78888899998 568888876
Q ss_pred h
Q 032967 127 W 127 (130)
Q Consensus 127 ~ 127 (130)
.
T Consensus 74 ~ 74 (75)
T PHA02125 74 G 74 (75)
T ss_pred C
Confidence 3
No 70
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.62 E-value=9.8e-16 Score=93.91 Aligned_cols=83 Identities=27% Similarity=0.508 Sum_probs=62.9
Q ss_pred hcCCCcEEEEEeCCCCHhHHhhHHHHHH---HHhhCC-CeEEEEEECCCCh--------------------hhhc--CCc
Q 032967 44 KSSKIPAVINYGASWCGVCNQILPAFCK---LSNNFP-KLSFIYADIDECP--------------------ETTQ--HIR 97 (130)
Q Consensus 44 ~~~~~~~lv~f~s~~C~~C~~~~~~~~~---l~~~~~-~v~~~~id~~~~~--------------------~~~~--~v~ 97 (130)
..++++++++||++||++|+.+.+.+.+ +...+. ++.++.++++... ++.. +|.
T Consensus 2 ~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 2 KGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN 81 (112)
T ss_dssp ETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence 4688999999999999999999998875 444443 5788888887533 2333 899
Q ss_pred cccEEEEEe-CCeEEEEeeCC-CHHHHHHHH
Q 032967 98 YTPTFHFYR-DGERVDEMFGA-GEERLHDRL 126 (130)
Q Consensus 98 ~~Pt~~~~~-~g~~~~~~~g~-~~~~l~~~l 126 (130)
++||++++. +|+.+.++.|. +.++|.++|
T Consensus 82 gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 82 GTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred ccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 999999995 89999999999 999998875
No 71
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.62 E-value=5.8e-15 Score=84.79 Aligned_cols=71 Identities=21% Similarity=0.300 Sum_probs=57.4
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCChhhhc-CCccccEEEEEeCCeEEEEeeCC--CHHHHHHHH
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ-HIRYTPTFHFYRDGERVDEMFGA--GEERLHDRL 126 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~~~~~~-~v~~~Pt~~~~~~g~~~~~~~g~--~~~~l~~~l 126 (130)
.|.||++||++|+.+.|.+++++++++ .+.++.+| ..+.... ++.++|++++ +|+.+ +.|. ..++|.++|
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT--DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEIL 75 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHHh
Confidence 378999999999999999999999997 58887776 3333333 9999999999 88877 6774 568888877
Q ss_pred h
Q 032967 127 W 127 (130)
Q Consensus 127 ~ 127 (130)
+
T Consensus 76 ~ 76 (76)
T TIGR00412 76 K 76 (76)
T ss_pred C
Confidence 4
No 72
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.59 E-value=2e-14 Score=107.88 Aligned_cols=84 Identities=21% Similarity=0.343 Sum_probs=69.5
Q ss_pred cCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEEC----------------------------CCChhhhc
Q 032967 45 SSKIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADI----------------------------DECPETTQ 94 (130)
Q Consensus 45 ~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~----------------------------~~~~~~~~ 94 (130)
.+++++||+|||+||++|+.+.|.++++.++++ ++.++.|.. |.+..+..
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 478999999999999999999999999999886 577766543 23334444
Q ss_pred --CCccccEEEEE-eCCeEEEEeeCC-CHHHHHHHHhh
Q 032967 95 --HIRYTPTFHFY-RDGERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 95 --~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
+|.++||++++ ++|+++.++.|. +.++|.++|+.
T Consensus 134 ~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 134 SLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 89999998555 799999999999 99999999874
No 73
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.58 E-value=6.8e-14 Score=98.03 Aligned_cols=84 Identities=20% Similarity=0.351 Sum_probs=66.9
Q ss_pred hcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCC-----------hhhhc--CCccccEEEEEeC-Ce
Q 032967 44 KSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDEC-----------PETTQ--HIRYTPTFHFYRD-GE 109 (130)
Q Consensus 44 ~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~-----------~~~~~--~v~~~Pt~~~~~~-g~ 109 (130)
.-.++++||+||++||++|+.+.|.+++++++|+ +.++.|+++.. ..+.. +|.++|++++++. |+
T Consensus 163 ~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~ 241 (271)
T TIGR02740 163 DLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPN 241 (271)
T ss_pred HhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCC
Confidence 3467899999999999999999999999999994 66666676642 23444 9999999999975 55
Q ss_pred EEE-EeeCC-CHHHHHHHHhh
Q 032967 110 RVD-EMFGA-GEERLHDRLWL 128 (130)
Q Consensus 110 ~~~-~~~g~-~~~~l~~~l~~ 128 (130)
.+. ...|. +.++|.+.|..
T Consensus 242 ~v~~v~~G~~s~~eL~~~i~~ 262 (271)
T TIGR02740 242 QFTPIGFGVMSADELVDRILL 262 (271)
T ss_pred EEEEEEeCCCCHHHHHHHHHH
Confidence 544 56688 99999888764
No 74
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.57 E-value=4.6e-14 Score=88.06 Aligned_cols=75 Identities=17% Similarity=0.154 Sum_probs=59.1
Q ss_pred hhcCCCcEEEEEeCCCCHhHHhhHHH-H--HHHHhhC-CCeEEEEEECCCChhhhc----------CCccccEEEEE-eC
Q 032967 43 IKSSKIPAVINYGASWCGVCNQILPA-F--CKLSNNF-PKLSFIYADIDECPETTQ----------HIRYTPTFHFY-RD 107 (130)
Q Consensus 43 ~~~~~~~~lv~f~s~~C~~C~~~~~~-~--~~l~~~~-~~v~~~~id~~~~~~~~~----------~v~~~Pt~~~~-~~ 107 (130)
+..++++++|.|+++||+.|+.|.+. + .++++.+ +++.++++|.++.+++.. ++.++|+++++ .+
T Consensus 11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~ 90 (124)
T cd02955 11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPD 90 (124)
T ss_pred HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCC
Confidence 35699999999999999999999863 3 3555554 478999999998887642 67899999999 57
Q ss_pred CeEEEEeeCC
Q 032967 108 GERVDEMFGA 117 (130)
Q Consensus 108 g~~~~~~~g~ 117 (130)
|+.+.+..+.
T Consensus 91 G~~~~~~~~~ 100 (124)
T cd02955 91 LKPFFGGTYF 100 (124)
T ss_pred CCEEeeeeec
Confidence 8888666554
No 75
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.56 E-value=1.8e-13 Score=90.14 Aligned_cols=82 Identities=20% Similarity=0.315 Sum_probs=64.9
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCCh-----------------------hhhc--CCcccc
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECP-----------------------ETTQ--HIRYTP 100 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~-----------------------~~~~--~v~~~P 100 (130)
++++++|+||++||++|+.+.|.++++.+. ++.++.|+.+... .+.. ++.++|
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P 139 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence 689999999999999999999999998764 5777777754221 1122 677899
Q ss_pred E-EEEEeCCeEEEEeeCC-CHHHHHHHHhhc
Q 032967 101 T-FHFYRDGERVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 101 t-~~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 129 (130)
+ +++.++|+.+.++.|. +.+++.++|+++
T Consensus 140 ~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 140 ETFLVDGNGVILYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred eEEEEcCCceEEEEEeccCCHHHHHHHHHHH
Confidence 5 5555799999999999 999999998764
No 76
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.56 E-value=1e-14 Score=101.41 Aligned_cols=94 Identities=28% Similarity=0.465 Sum_probs=82.6
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhh----CC--CeEEEEEECCCChhhhc--CCccccEEE
Q 032967 32 SDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNN----FP--KLSFIYADIDECPETTQ--HIRYTPTFH 103 (130)
Q Consensus 32 ~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~----~~--~v~~~~id~~~~~~~~~--~v~~~Pt~~ 103 (130)
+.++++.+++ ++..++|.|||+||+.++.+.|.+++.++. +| ++.+.+|||+++..++. .|..+||+.
T Consensus 2 t~~N~~~il~----s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlK 77 (375)
T KOG0912|consen 2 TSENIDSILD----SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLK 77 (375)
T ss_pred ccccHHHhhc----cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceee
Confidence 3467788885 799999999999999999999999887655 45 59999999999999988 999999999
Q ss_pred EEeCCeEEE-EeeCC-CHHHHHHHHhhc
Q 032967 104 FYRDGERVD-EMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 104 ~~~~g~~~~-~~~g~-~~~~l~~~l~~~ 129 (130)
+|.+|.... .|-|. +.+.|.++|++.
T Consensus 78 vfrnG~~~~rEYRg~RsVeaL~efi~kq 105 (375)
T KOG0912|consen 78 VFRNGEMMKREYRGQRSVEALIEFIEKQ 105 (375)
T ss_pred eeeccchhhhhhccchhHHHHHHHHHHH
Confidence 999999776 77788 999999999864
No 77
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.55 E-value=1e-13 Score=89.47 Aligned_cols=82 Identities=23% Similarity=0.319 Sum_probs=62.8
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCC------------hhhh---c---CCccccEEEEEe-
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDEC------------PETT---Q---HIRYTPTFHFYR- 106 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~------------~~~~---~---~v~~~Pt~~~~~- 106 (130)
.++..+|+||++||++|+...|.++++++++ ++.++.|+++.. .... . ++.++||.+++.
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 5577799999999999999999999999998 456666666542 1111 1 467899877774
Q ss_pred CCeE-EEEeeCC-CHHHHHHHHhh
Q 032967 107 DGER-VDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 107 ~g~~-~~~~~g~-~~~~l~~~l~~ 128 (130)
+|+. ..++.|. +.+++.+.|.+
T Consensus 128 ~G~~i~~~~~G~~s~~~l~~~I~~ 151 (153)
T TIGR02738 128 NTRKAYPVLQGAVDEAELANRMDE 151 (153)
T ss_pred CCCEEEEEeecccCHHHHHHHHHH
Confidence 5564 5578999 99999988865
No 78
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.55 E-value=1.2e-13 Score=91.99 Aligned_cols=81 Identities=15% Similarity=0.229 Sum_probs=65.1
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhh-----------------------h-c-CCcccc
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPET-----------------------T-Q-HIRYTP 100 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~-----------------------~-~-~v~~~P 100 (130)
++++++|+||++||++|+...|.+.++.+. ++.++.|+.+..+.. . . ++.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 689999999999999999999999999754 688888887544321 1 1 678899
Q ss_pred E-EEEEeCCeEEEEeeCC-CHHHHHHHHhh
Q 032967 101 T-FHFYRDGERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 101 t-~~~~~~g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
+ |++-++|++..++.|. +.+++.+.|+.
T Consensus 145 ~t~vid~~G~i~~~~~G~~~~~~l~~~i~~ 174 (185)
T PRK15412 145 ETFLIDGNGIIRYRHAGDLNPRVWESEIKP 174 (185)
T ss_pred eEEEECCCceEEEEEecCCCHHHHHHHHHH
Confidence 5 5555799999999999 88888887764
No 79
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.54 E-value=9.3e-14 Score=86.95 Aligned_cols=77 Identities=19% Similarity=0.255 Sum_probs=60.4
Q ss_pred cCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECC-----------------------CChhhhc--CCccc
Q 032967 45 SSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADID-----------------------ECPETTQ--HIRYT 99 (130)
Q Consensus 45 ~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~-----------------------~~~~~~~--~v~~~ 99 (130)
-++++++|+||++||++|+...|.+.++.+.+ ++.++.|+.+ ....++. ++.++
T Consensus 23 ~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 23 LKGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred cCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 36789999999999999999999999998887 4777777643 2223333 78899
Q ss_pred cE-EEEEeCCeEEEEeeCC-CHHHH
Q 032967 100 PT-FHFYRDGERVDEMFGA-GEERL 122 (130)
Q Consensus 100 Pt-~~~~~~g~~~~~~~g~-~~~~l 122 (130)
|+ +++.++|+++.++.|. +.+.|
T Consensus 102 P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 PETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CeEEEECCCceEEEEEeccCChHhc
Confidence 95 5555799999999999 76654
No 80
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.54 E-value=1.3e-13 Score=84.91 Aligned_cols=96 Identities=17% Similarity=0.105 Sum_probs=76.5
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHH-H--HHHHhhCC-CeEEEEEECCCC--hhhhc--CCccccEEEEE
Q 032967 34 QNHKDILLQIKSSKIPAVINYGASWCGVCNQILPA-F--CKLSNNFP-KLSFIYADIDEC--PETTQ--HIRYTPTFHFY 105 (130)
Q Consensus 34 ~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~-~--~~l~~~~~-~v~~~~id~~~~--~~~~~--~v~~~Pt~~~~ 105 (130)
.+|.+.+..+..++++++|+||++||+.|+.+... | ..+.+.+. +..++.+|++.. ..++. ++.++|+++++
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i 83 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAII 83 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEE
Confidence 45788888888899999999999999999999763 3 34444443 577888888742 23333 89999999998
Q ss_pred e--CCeEEEEeeCC-CHHHHHHHHhhc
Q 032967 106 R--DGERVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 106 ~--~g~~~~~~~g~-~~~~l~~~l~~~ 129 (130)
. +|+.+.++.|. +++++.+.|+++
T Consensus 84 ~~~~g~~l~~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 84 DPRTGEVLKVWSGNITPEDLLSQLIEF 110 (114)
T ss_pred eCccCcEeEEEcCCCCHHHHHHHHHHH
Confidence 5 68999999999 999999988764
No 81
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.53 E-value=9.8e-14 Score=77.63 Aligned_cols=60 Identities=17% Similarity=0.302 Sum_probs=52.9
Q ss_pred EEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc--CCccccEEEEEeCCeEE
Q 032967 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRDGERV 111 (130)
Q Consensus 50 ~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g~~~ 111 (130)
-+..|+++||++|+.+.+.+++++..++++.+..+|+++++++.. ++.++|++++ +|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEE
Confidence 478899999999999999999999888889999999999998776 9999999876 66533
No 82
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.52 E-value=2.7e-13 Score=80.04 Aligned_cols=74 Identities=18% Similarity=0.250 Sum_probs=64.6
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc--CCccccEEEEEeCCeEEEEeeCC-CHHHH
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRDGERVDEMFGA-GEERL 122 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l 122 (130)
.+..-+..|+++||++|....+.+.++++.++++.+..+|.+..++++. +|.++|++++ +|+.+. .|. +.+++
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~--~G~~~~~e~ 86 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFG--FGRMTLEEI 86 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEE--eCCCCHHHH
Confidence 5566899999999999999999999999999999999999999998776 9999999975 887665 477 77776
Q ss_pred H
Q 032967 123 H 123 (130)
Q Consensus 123 ~ 123 (130)
.
T Consensus 87 ~ 87 (89)
T cd03026 87 L 87 (89)
T ss_pred h
Confidence 4
No 83
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.51 E-value=6.1e-13 Score=83.36 Aligned_cols=94 Identities=14% Similarity=0.116 Sum_probs=81.9
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEEeCC--CCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCChhhhc--CCccccEEEEE
Q 032967 32 SDQNHKDILLQIKSSKIPAVINYGAS--WCGVCNQILPAFCKLSNNFP--KLSFIYADIDECPETTQ--HIRYTPTFHFY 105 (130)
Q Consensus 32 ~~~~~~~~i~~~~~~~~~~lv~f~s~--~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~~~~~--~v~~~Pt~~~~ 105 (130)
+..++++.+. .....+++|-++ .++.+....-++.+++++|+ ++.+++||++.++.++. +|.++||+++|
T Consensus 23 ~~~~~~~~~~----~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~F 98 (132)
T PRK11509 23 SESRLDDWLT----QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVF 98 (132)
T ss_pred ccccHHHHHh----CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEE
Confidence 3477888885 556666666665 58899999999999999998 39999999999999998 99999999999
Q ss_pred eCCeEEEEeeCC-CHHHHHHHHhhc
Q 032967 106 RDGERVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 106 ~~g~~~~~~~g~-~~~~l~~~l~~~ 129 (130)
++|+.+.++.|. +.+++.++|+++
T Consensus 99 kdGk~v~~i~G~~~k~~l~~~I~~~ 123 (132)
T PRK11509 99 TGGNYRGVLNGIHPWAELINLMRGL 123 (132)
T ss_pred ECCEEEEEEeCcCCHHHHHHHHHHH
Confidence 999999999999 999999999864
No 84
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.50 E-value=2.7e-13 Score=84.83 Aligned_cols=85 Identities=14% Similarity=0.148 Sum_probs=61.5
Q ss_pred hHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHH---HHHHhhCC-CeEEEEEECCCCh-hhhcCCccccEEEEE-e
Q 032967 33 DQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAF---CKLSNNFP-KLSFIYADIDECP-ETTQHIRYTPTFHFY-R 106 (130)
Q Consensus 33 ~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~---~~l~~~~~-~v~~~~id~~~~~-~~~~~v~~~Pt~~~~-~ 106 (130)
..+|++.++.+..++++++|+||++||++|+.+...+ .++.+... +...+.++.+... .......++||++|+ .
T Consensus 9 ~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g~~vPtivFld~ 88 (130)
T cd02960 9 VQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDGQYVPRIMFVDP 88 (130)
T ss_pred hhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccCcccCeEEEECC
Confidence 3478999998899999999999999999999998754 33333332 4566667765322 222222689999999 5
Q ss_pred CCeEEEEeeCC
Q 032967 107 DGERVDEMFGA 117 (130)
Q Consensus 107 ~g~~~~~~~g~ 117 (130)
+|+.+.++.|.
T Consensus 89 ~g~vi~~i~Gy 99 (130)
T cd02960 89 SLTVRADITGR 99 (130)
T ss_pred CCCCccccccc
Confidence 77777777776
No 85
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.5e-13 Score=100.70 Aligned_cols=93 Identities=27% Similarity=0.494 Sum_probs=81.2
Q ss_pred hHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCChhhhc--CCccccEEEEEeCCe
Q 032967 33 DQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIRYTPTFHFYRDGE 109 (130)
Q Consensus 33 ~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g~ 109 (130)
..++...+. ..+++++|.||++||++|+.+.|.+.+++..+. .+.+..||++.+..++. +|.++||+.+|..|.
T Consensus 36 ~~~~~~~~~---~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~ 112 (383)
T KOG0191|consen 36 LDSFFDFLL---KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGK 112 (383)
T ss_pred ccccHHHhh---ccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCC
Confidence 344555553 689999999999999999999999999999998 49999999999999998 999999999999996
Q ss_pred EEEEeeCC-CHHHHHHHHhh
Q 032967 110 RVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 110 ~~~~~~g~-~~~~l~~~l~~ 128 (130)
....+.|. +.+.+.+++.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~ 132 (383)
T KOG0191|consen 113 KPIDYSGPRNAESLAEFLIK 132 (383)
T ss_pred ceeeccCcccHHHHHHHHHH
Confidence 67778888 88888888764
No 86
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.49 E-value=2.5e-13 Score=101.76 Aligned_cols=101 Identities=16% Similarity=0.311 Sum_probs=83.8
Q ss_pred eeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHH---HHHHhhCCCeEEEEEECCCChh-hh----c-CCc
Q 032967 27 LKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAF---CKLSNNFPKLSFIYADIDECPE-TT----Q-HIR 97 (130)
Q Consensus 27 ~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~---~~l~~~~~~v~~~~id~~~~~~-~~----~-~v~ 97 (130)
...+++..++++.++ .+.+++++++|||+||..|+.+.+.. .+...+.+++...++|++++.. .. + ++-
T Consensus 456 ~q~~s~~~~L~~~la--~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~ 533 (569)
T COG4232 456 WQPISPLAELDQALA--EAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVF 533 (569)
T ss_pred hhccCCHHHHHHHHH--hCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCC
Confidence 367777779999998 45667999999999999999998865 4456667799999999997653 22 2 889
Q ss_pred cccEEEEEe-CCeEEEEeeCC-CHHHHHHHHhhc
Q 032967 98 YTPTFHFYR-DGERVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 98 ~~Pt~~~~~-~g~~~~~~~g~-~~~~l~~~l~~~ 129 (130)
++|++++|. +|++.....|. +.+.+.+++++.
T Consensus 534 G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 534 GVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 999999997 78777779999 999999999875
No 87
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.49 E-value=6e-13 Score=82.71 Aligned_cols=80 Identities=25% Similarity=0.385 Sum_probs=61.8
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEEC---------------------CCChhhhc--CCccccEE
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADI---------------------DECPETTQ--HIRYTPTF 102 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~---------------------~~~~~~~~--~v~~~Pt~ 102 (130)
.+++++|.||++||++|+.+.|.+.++.+++. +..+.+|- +.+..++. ++.++|++
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~ 97 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAI 97 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEE
Confidence 56999999999999999999999999987753 22222221 22334444 88999999
Q ss_pred EEEeCCeEEEEeeCC-CHHHHHHHH
Q 032967 103 HFYRDGERVDEMFGA-GEERLHDRL 126 (130)
Q Consensus 103 ~~~~~g~~~~~~~g~-~~~~l~~~l 126 (130)
+++.+|++..++.|. +.++|.+.+
T Consensus 98 ~vid~~gi~~~~~g~~~~~~~~~~~ 122 (123)
T cd03011 98 VIVDPGGIVFVTTGVTSEWGLRLRL 122 (123)
T ss_pred EEEcCCCeEEEEeccCCHHHHHhhc
Confidence 999766688899999 999998765
No 88
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.49 E-value=4.8e-13 Score=108.13 Aligned_cols=83 Identities=16% Similarity=0.263 Sum_probs=68.9
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEEC---CC------------------------Chhhhc--
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADI---DE------------------------CPETTQ-- 94 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~---~~------------------------~~~~~~-- 94 (130)
+++++||+||++||++|+...|.++++.++|+ ++.++.|.. +. ...+..
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 68999999999999999999999999999997 477777753 21 112222
Q ss_pred CCccccEEEEE-eCCeEEEEeeCC-CHHHHHHHHhh
Q 032967 95 HIRYTPTFHFY-RDGERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 95 ~v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
++.++|+++++ ++|+++.++.|. ..++|.++|+.
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~ 534 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEA 534 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHH
Confidence 78899999999 699999999999 88999888875
No 89
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.49 E-value=8.6e-13 Score=86.53 Aligned_cols=84 Identities=23% Similarity=0.434 Sum_probs=70.2
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCCh----------------------hhhc--CCccc
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDECP----------------------ETTQ--HIRYT 99 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~----------------------~~~~--~v~~~ 99 (130)
.+++++|+||++||+.|+...+.+.++.++++ ++.++.|+++..+ .+.. ++.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 67899999999999999999999999999987 4889999886442 2333 78899
Q ss_pred cEEEEE-eCCeEEEEeeCC-CHHHHHHHHhhc
Q 032967 100 PTFHFY-RDGERVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 100 Pt~~~~-~~g~~~~~~~g~-~~~~l~~~l~~~ 129 (130)
|+++++ .+|+.+..+.|. +.+++.++++..
T Consensus 140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 987777 588888888998 999999998764
No 90
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.45 E-value=1.4e-12 Score=90.96 Aligned_cols=107 Identities=18% Similarity=0.310 Sum_probs=81.1
Q ss_pred CCCceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc-CCccccE
Q 032967 23 HHGHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ-HIRYTPT 101 (130)
Q Consensus 23 ~~~~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~-~v~~~Pt 101 (130)
..+.+..+.+.++|.+.+.. ..++..+||+||.+.++.|..+...|..||.+|+.++|++|.....+.... ...++||
T Consensus 123 ~fG~v~ei~~~e~~l~~ie~-~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~~~~~f~~~~LPt 201 (265)
T PF02114_consen 123 RFGEVYEIDSGEEFLDAIEK-ESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCPASENFPDKNLPT 201 (265)
T ss_dssp ---SEEE--SHHHHHHHCCT-SSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCCTTTTS-TTC-SE
T ss_pred cCceEEEccChhhHHHHHhc-cCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccCcccCCcccCCCE
Confidence 46788899888999999852 123467999999999999999999999999999999999999987763333 7889999
Q ss_pred EEEEeCCeEEEEeeCC--------CHHHHHHHHhhcC
Q 032967 102 FHFYRDGERVDEMFGA--------GEERLHDRLWLHS 130 (130)
Q Consensus 102 ~~~~~~g~~~~~~~g~--------~~~~l~~~l~~~~ 130 (130)
+++|++|..+..++|. +.++|..+|.++.
T Consensus 202 llvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 202 LLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYG 238 (265)
T ss_dssp EEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred EEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence 9999999999888764 3558888887763
No 91
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.43 E-value=1.1e-12 Score=82.52 Aligned_cols=67 Identities=21% Similarity=0.461 Sum_probs=53.1
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC----CeEEEEEECCCCh------------------------hhhc--C
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFP----KLSFIYADIDECP------------------------ETTQ--H 95 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~----~v~~~~id~~~~~------------------------~~~~--~ 95 (130)
+++++||+||++||++|+...|.+.++.+++. ++.++.|+++... .+.. +
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 67899999999999999999999998877763 5777777776542 2222 8
Q ss_pred CccccEEEEEe-CCeEEE
Q 032967 96 IRYTPTFHFYR-DGERVD 112 (130)
Q Consensus 96 v~~~Pt~~~~~-~g~~~~ 112 (130)
+.++|+++++. +|+++.
T Consensus 97 v~~~P~~~lid~~G~i~~ 114 (131)
T cd03009 97 IEGIPTLIILDADGEVVT 114 (131)
T ss_pred CCCCCEEEEECCCCCEEc
Confidence 89999999996 777654
No 92
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.42 E-value=1.4e-12 Score=82.24 Aligned_cols=67 Identities=18% Similarity=0.463 Sum_probs=53.2
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC----CeEEEEEECCCCh-------------------------hhhc--
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFP----KLSFIYADIDECP-------------------------ETTQ-- 94 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~----~v~~~~id~~~~~-------------------------~~~~-- 94 (130)
+++++||+||++||++|+...|.++++.++++ ++.++.|+++..+ .+..
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 67999999999999999999999999887765 4777777777543 2222
Q ss_pred CCccccEEEEEe-CCeEEE
Q 032967 95 HIRYTPTFHFYR-DGERVD 112 (130)
Q Consensus 95 ~v~~~Pt~~~~~-~g~~~~ 112 (130)
++.++|+++++. +|+++.
T Consensus 96 ~v~~iPt~~lid~~G~iv~ 114 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVT 114 (132)
T ss_pred CCCCCCEEEEECCCCCEEc
Confidence 789999988885 676554
No 93
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.42 E-value=1.7e-12 Score=77.21 Aligned_cols=63 Identities=29% Similarity=0.628 Sum_probs=49.6
Q ss_pred CCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC---CeEEEEEECCCChhh-------------------------hc--CC
Q 032967 47 KIPAVINYGASWCGVCNQILPAFCKLSNNFP---KLSFIYADIDECPET-------------------------TQ--HI 96 (130)
Q Consensus 47 ~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~---~v~~~~id~~~~~~~-------------------------~~--~v 96 (130)
+++++|+|||+||++|+...|.+.++.++|+ ++.++.|++++..+- .. ++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5899999999999999999999999999998 799999999865321 11 67
Q ss_pred ccccEEEEEe-CCe
Q 032967 97 RYTPTFHFYR-DGE 109 (130)
Q Consensus 97 ~~~Pt~~~~~-~g~ 109 (130)
.++|+++++. +|+
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 8899988885 443
No 94
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.41 E-value=2.4e-12 Score=82.38 Aligned_cols=68 Identities=16% Similarity=0.353 Sum_probs=52.6
Q ss_pred cCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC---------CeEEEEEECCCChh------------------------
Q 032967 45 SSKIPAVINYGASWCGVCNQILPAFCKLSNNFP---------KLSFIYADIDECPE------------------------ 91 (130)
Q Consensus 45 ~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~---------~v~~~~id~~~~~~------------------------ 91 (130)
-++++++|+|||+||++|+...|.+.++.+++. ++.++.|+.+...+
T Consensus 23 ~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~ 102 (146)
T cd03008 23 LENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRR 102 (146)
T ss_pred hCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHH
Confidence 378999999999999999999999999765432 58888888876432
Q ss_pred -hhc--CCccccEEEEEe-CCeEEE
Q 032967 92 -TTQ--HIRYTPTFHFYR-DGERVD 112 (130)
Q Consensus 92 -~~~--~v~~~Pt~~~~~-~g~~~~ 112 (130)
+.. ++.++|+.+++. +|+++.
T Consensus 103 ~l~~~y~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 103 ELEAQFSVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred HHHHHcCCCCCCEEEEECCCCcEEe
Confidence 111 678999988885 776664
No 95
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.41 E-value=3.6e-12 Score=77.31 Aligned_cols=71 Identities=23% Similarity=0.453 Sum_probs=60.5
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhC--CCeEEEEEECCCC-----------------------hhhhc--CCcc
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNF--PKLSFIYADIDEC-----------------------PETTQ--HIRY 98 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~--~~v~~~~id~~~~-----------------------~~~~~--~v~~ 98 (130)
.+++++++||++||+.|+...+.+.++.+++ +++.++.|+++.. ..+.. ++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 4789999999999999999999999999998 4799999999875 44444 7889
Q ss_pred ccEEEEEe-CCeEEEEeeC
Q 032967 99 TPTFHFYR-DGERVDEMFG 116 (130)
Q Consensus 99 ~Pt~~~~~-~g~~~~~~~g 116 (130)
+|+++++. +|+.+.++.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 99988884 7888887765
No 96
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.39 E-value=9.7e-13 Score=76.53 Aligned_cols=73 Identities=21% Similarity=0.508 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHH---HHHHhhC-CCeEEEEEECCCChhhhc-CCccccEEEEEe
Q 032967 34 QNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAF---CKLSNNF-PKLSFIYADIDECPETTQ-HIRYTPTFHFYR 106 (130)
Q Consensus 34 ~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~---~~l~~~~-~~v~~~~id~~~~~~~~~-~v~~~Pt~~~~~ 106 (130)
.++++.+..+..++++++|+|+++||+.|+.+...+ .++.+.+ +++.++.+|.+....... ...++|+++++.
T Consensus 4 ~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 4 SDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDRQGYPTFFFLD 81 (82)
T ss_dssp SSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHHCSSSEEEEEE
T ss_pred hhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCCccCCEEEEeC
Confidence 357788888889999999999999999999998766 3444422 379999999987665443 336799999875
No 97
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.4e-12 Score=94.34 Aligned_cols=99 Identities=17% Similarity=0.340 Sum_probs=85.3
Q ss_pred eeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC---CeEEEEEECCCChhhhc--CCccccE
Q 032967 27 LKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP---KLSFIYADIDECPETTQ--HIRYTPT 101 (130)
Q Consensus 27 ~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~---~v~~~~id~~~~~~~~~--~v~~~Pt 101 (130)
+... +..+|...+. ..+..++|.||+|||++|+.+.|.+.+++..+. .+.+..+|++....++. +|.++||
T Consensus 146 v~~l-~~~~~~~~~~---~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt 221 (383)
T KOG0191|consen 146 VFEL-TKDNFDETVK---DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPT 221 (383)
T ss_pred eEEc-cccchhhhhh---ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCce
Confidence 4444 5677888774 788999999999999999999999999998874 69999999997777776 9999999
Q ss_pred EEEEeCCeE-EEEeeCC-CHHHHHHHHhhc
Q 032967 102 FHFYRDGER-VDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 102 ~~~~~~g~~-~~~~~g~-~~~~l~~~l~~~ 129 (130)
+.+|.+|.. ...+.|. +.+.+.+|++..
T Consensus 222 ~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~ 251 (383)
T KOG0191|consen 222 LKLFPPGEEDIYYYSGLRDSDSIVSFVEKK 251 (383)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHhh
Confidence 999999988 7777788 999999998764
No 98
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=4.5e-13 Score=99.85 Aligned_cols=100 Identities=16% Similarity=0.381 Sum_probs=77.9
Q ss_pred CCCceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC----CeEEEEEECC--CChhhhc--
Q 032967 23 HHGHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP----KLSFIYADID--ECPETTQ-- 94 (130)
Q Consensus 23 ~~~~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~----~v~~~~id~~--~~~~~~~-- 94 (130)
.+.++.++ +.++|+..+. .+.+-.+|.||++||++|+.+.|.|+++++... -+.++.|||. .|..+|+
T Consensus 37 ~~D~ii~L-d~~tf~~~v~---~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef 112 (606)
T KOG1731|consen 37 PDDPIIEL-DVDTFNAAVF---GSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREF 112 (606)
T ss_pred CCCCeEEe-ehhhhHHHhc---ccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhc
Confidence 44566666 6899999995 666799999999999999999999999999875 3899999996 5677787
Q ss_pred CCccccEEEEEeCCeEE----EEeeCC-CHHHHHHHH
Q 032967 95 HIRYTPTFHFYRDGERV----DEMFGA-GEERLHDRL 126 (130)
Q Consensus 95 ~v~~~Pt~~~~~~g~~~----~~~~g~-~~~~l~~~l 126 (130)
+|+++|++.+|..+-.- ..+.|. ...++++.+
T Consensus 113 ~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l 149 (606)
T KOG1731|consen 113 SVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQL 149 (606)
T ss_pred CCCCCceeeecCCccccCcCCCcccCCcchhhHHHHH
Confidence 99999999999755222 233444 455555554
No 99
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.37 E-value=1.3e-11 Score=81.35 Aligned_cols=77 Identities=18% Similarity=0.222 Sum_probs=60.0
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCCh-------------hhhc--CC--ccccEEEEE-eCCeEE-
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECP-------------ETTQ--HI--RYTPTFHFY-RDGERV- 111 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~-------------~~~~--~v--~~~Pt~~~~-~~g~~~- 111 (130)
||.||++||++|++..|.+.+++++| ++.++.|+++... .+.. ++ .++|+.+++ ++|+.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 77899999999999999999999999 5777777766431 1111 42 599976666 788775
Q ss_pred EEeeCC-CHHHHHHHHhh
Q 032967 112 DEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 112 ~~~~g~-~~~~l~~~l~~ 128 (130)
..+.|. +.++|.+.|.+
T Consensus 152 ~~~~G~~~~~~L~~~I~~ 169 (181)
T PRK13728 152 PLLQGATDAAGFMARMDT 169 (181)
T ss_pred EEEECCCCHHHHHHHHHH
Confidence 579999 99999888764
No 100
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.36 E-value=8.1e-12 Score=81.91 Aligned_cols=93 Identities=17% Similarity=0.292 Sum_probs=86.8
Q ss_pred CCCCCceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc--CCcc
Q 032967 21 NNHHGHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRY 98 (130)
Q Consensus 21 ~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~--~v~~ 98 (130)
...++.+..+.+..+|-+... +...+|++||-+.-..|+.|...++.|++.+....|++||+...|=++. +|..
T Consensus 62 ~~GhG~y~ev~~Ekdf~~~~~----kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkV 137 (211)
T KOG1672|consen 62 SKGHGEYEEVASEKDFFEEVK----KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKV 137 (211)
T ss_pred HcCCceEEEeccHHHHHHHhh----cCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeE
Confidence 456889999999999999985 7788999999999999999999999999999999999999999999988 9999
Q ss_pred ccEEEEEeCCeEEEEeeCC
Q 032967 99 TPTFHFYRDGERVDEMFGA 117 (130)
Q Consensus 99 ~Pt~~~~~~g~~~~~~~g~ 117 (130)
+|++++|++|....++.|.
T Consensus 138 LP~v~l~k~g~~~D~iVGF 156 (211)
T KOG1672|consen 138 LPTVALFKNGKTVDYVVGF 156 (211)
T ss_pred eeeEEEEEcCEEEEEEeeH
Confidence 9999999999999988876
No 101
>smart00594 UAS UAS domain.
Probab=99.33 E-value=3.3e-11 Score=75.14 Aligned_cols=95 Identities=12% Similarity=0.031 Sum_probs=71.9
Q ss_pred hHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHH---HHHHhhCC-CeEEEEEECCCChh--hhc--CCccccEEEE
Q 032967 33 DQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAF---CKLSNNFP-KLSFIYADIDECPE--TTQ--HIRYTPTFHF 104 (130)
Q Consensus 33 ~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~---~~l~~~~~-~v~~~~id~~~~~~--~~~--~v~~~Pt~~~ 104 (130)
...|++.+..+...+|+++|+||++||+.|+.+...+ .++.+.+. ++.+..+|++..+. ++. ++.++|++++
T Consensus 13 ~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~ 92 (122)
T smart00594 13 QGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAI 92 (122)
T ss_pred eCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEE
Confidence 3467788777778899999999999999999987643 33433333 57888888875543 333 8999999888
Q ss_pred Ee-CC-----eEEEEeeCC-CHHHHHHHHh
Q 032967 105 YR-DG-----ERVDEMFGA-GEERLHDRLW 127 (130)
Q Consensus 105 ~~-~g-----~~~~~~~g~-~~~~l~~~l~ 127 (130)
+. +| +.+.++.|. +.++|.+.|.
T Consensus 93 l~~~~g~~~~~~~~~~~G~~~~~~l~~~l~ 122 (122)
T smart00594 93 VDPRTGQRVIEWVGVVEGEISPEELMTFLE 122 (122)
T ss_pred EecCCCceeEEEeccccCCCCHHHHHHhhC
Confidence 84 44 357789999 9999998763
No 102
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.33 E-value=1.7e-11 Score=76.71 Aligned_cols=72 Identities=19% Similarity=0.274 Sum_probs=57.0
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCC-----Chh----------------------hhc--
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDE-----CPE----------------------TTQ-- 94 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~-----~~~----------------------~~~-- 94 (130)
+++++||+||++||++|+...|.+.++.++|+ ++.++.|+.+. .++ +..
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 67999999999999999999999999999997 58888876521 111 111
Q ss_pred CCccccEEEEE-eCCeEEEEeeCC
Q 032967 95 HIRYTPTFHFY-RDGERVDEMFGA 117 (130)
Q Consensus 95 ~v~~~Pt~~~~-~~g~~~~~~~g~ 117 (130)
++.++|+++++ ++|+.+.++.|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 56789988888 588888888773
No 103
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3.1e-12 Score=85.32 Aligned_cols=95 Identities=22% Similarity=0.355 Sum_probs=80.7
Q ss_pred CCCCCceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCChhhhc----
Q 032967 21 NNHHGHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDECPETTQ---- 94 (130)
Q Consensus 21 ~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~~~~~---- 94 (130)
...++.+....+...+++.++ .++.+.|+|.|++.|.+.|+...|.+.+++.+|. .++|.+||+...++.+.
T Consensus 120 y~gpe~ikyf~~~q~~deel~--rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfri 197 (265)
T KOG0914|consen 120 YSGPETIKYFTNMQLEDEELD--RNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRI 197 (265)
T ss_pred cCCchheeeecchhhHHHHhc--cCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheee
Confidence 345566777778888888887 7888999999999999999999999999999997 69999999999888765
Q ss_pred ----CCccccEEEEEeCCeEEEEeeCC
Q 032967 95 ----HIRYTPTFHFYRDGERVDEMFGA 117 (130)
Q Consensus 95 ----~v~~~Pt~~~~~~g~~~~~~~g~ 117 (130)
+.+.+||+++|++|+++.|....
T Consensus 198 s~s~~srQLPT~ilFq~gkE~~RrP~v 224 (265)
T KOG0914|consen 198 SLSPGSRQLPTYILFQKGKEVSRRPDV 224 (265)
T ss_pred ccCcccccCCeEEEEccchhhhcCccc
Confidence 34578999999999988765543
No 104
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.27 E-value=5.1e-11 Score=80.17 Aligned_cols=83 Identities=16% Similarity=0.202 Sum_probs=63.2
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCC-------Chh-hhc-----CC--------------
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDE-------CPE-TTQ-----HI-------------- 96 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~-------~~~-~~~-----~v-------------- 96 (130)
+++++||.||++||++|+...|.+.++.++|. ++.++.|+++. .++ +.. ++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~ 117 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGEN 117 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCc
Confidence 67899999999999999999999999999987 58999888642 111 110 11
Q ss_pred ----------------------cccc----EEEEEeCCeEEEEeeCC-CHHHHHHHHhh
Q 032967 97 ----------------------RYTP----TFHFYRDGERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 97 ----------------------~~~P----t~~~~~~g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
.++| +|++-++|+++.++.|. +.+++.+.|.+
T Consensus 118 ~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ 176 (199)
T PTZ00056 118 THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAE 176 (199)
T ss_pred cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHH
Confidence 1122 56666899999999998 88888777764
No 105
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.27 E-value=6.1e-11 Score=66.84 Aligned_cols=67 Identities=19% Similarity=0.333 Sum_probs=53.4
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhh----c--CCccccEEEEEeCCeEEEEeeCCCHHHHHH
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETT----Q--HIRYTPTFHFYRDGERVDEMFGAGEERLHD 124 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~----~--~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~ 124 (130)
+..|+++||++|+.+.+.+.+ .++.+..+|++.++... . ++.++|++++. |+. +.|.+.+.|.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~~~~i~~ 71 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFDPEKLDQ 71 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCCHHHHHH
Confidence 568999999999999888765 26888899998876532 2 88899999874 543 66778899998
Q ss_pred HHh
Q 032967 125 RLW 127 (130)
Q Consensus 125 ~l~ 127 (130)
+|+
T Consensus 72 ~i~ 74 (74)
T TIGR02196 72 LLE 74 (74)
T ss_pred HhC
Confidence 875
No 106
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.26 E-value=7.2e-11 Score=75.44 Aligned_cols=79 Identities=27% Similarity=0.491 Sum_probs=62.0
Q ss_pred CCCcEEEEEeCC-CCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCChhh---------------------hc--CCc--
Q 032967 46 SKIPAVINYGAS-WCGVCNQILPAFCKLSNNFP--KLSFIYADIDECPET---------------------TQ--HIR-- 97 (130)
Q Consensus 46 ~~~~~lv~f~s~-~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~~~---------------------~~--~v~-- 97 (130)
++++++|.||++ ||++|+...|.+.++.+.|+ ++.++.|..+..+.. .. ++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 789999999999 99999999999999988865 588888877765432 11 556
Q ss_pred -------cccEEE-EEeCCeEEEEeeCC-C--HHHHHH
Q 032967 98 -------YTPTFH-FYRDGERVDEMFGA-G--EERLHD 124 (130)
Q Consensus 98 -------~~Pt~~-~~~~g~~~~~~~g~-~--~~~l~~ 124 (130)
++|+++ +-++|+++.+..|. . ..++.+
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~~~~~~~~~~~ 144 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKVVYRHVGPDPDEESDLEA 144 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBEEEEEESSBTTSHHSHHH
T ss_pred cccccCCeecEEEEEECCCEEEEEEeCCCCCCCCChhh
Confidence 899754 45899999999999 5 445444
No 107
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.22 E-value=1.8e-10 Score=76.98 Aligned_cols=81 Identities=16% Similarity=0.260 Sum_probs=55.5
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCC--------------------Chhhhc--CCccccEEE
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDE--------------------CPETTQ--HIRYTPTFH 103 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~--------------------~~~~~~--~v~~~Pt~~ 103 (130)
++++++|+||++||++|+...|.+.++.+++. +.++-|..+. ..++.. ++.++|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~-~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE-TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 67899999999999999999999999987763 3333333221 112222 778899765
Q ss_pred EE-eCCeEEEEeeCCCHHHHHHHHh
Q 032967 104 FY-RDGERVDEMFGAGEERLHDRLW 127 (130)
Q Consensus 104 ~~-~~g~~~~~~~g~~~~~l~~~l~ 127 (130)
++ ++|+...+....+.+++.+.++
T Consensus 152 lID~~G~I~~~g~~~~~~~le~ll~ 176 (189)
T TIGR02661 152 LLDQDGKIRAKGLTNTREHLESLLE 176 (189)
T ss_pred EECCCCeEEEccCCCCHHHHHHHHH
Confidence 55 6887766532226677777765
No 108
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.22 E-value=1.9e-10 Score=79.11 Aligned_cols=83 Identities=14% Similarity=0.235 Sum_probs=64.1
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCC-------C-hh---hh--c-----------C----
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDE-------C-PE---TT--Q-----------H---- 95 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~-------~-~~---~~--~-----------~---- 95 (130)
.++++||.||++||++|+...|.+.++.++|+ ++.++.|+++. . ++ .. . +
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 57999999999999999999999999999997 58898888641 1 11 00 0 0
Q ss_pred --------------------CccccE-EEEEeCCeEEEEeeCC-CHHHHHHHHhh
Q 032967 96 --------------------IRYTPT-FHFYRDGERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 96 --------------------v~~~Pt-~~~~~~g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
+.+.|+ |++-++|+++.++.|. +.++|.+.|++
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~ 232 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQK 232 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHH
Confidence 112475 5555899999999999 88999888875
No 109
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.21 E-value=1.7e-10 Score=76.46 Aligned_cols=80 Identities=9% Similarity=0.036 Sum_probs=60.0
Q ss_pred cCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEE------EEEECCCCh----------------------------
Q 032967 45 SSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSF------IYADIDECP---------------------------- 90 (130)
Q Consensus 45 ~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~------~~id~~~~~---------------------------- 90 (130)
-.+++.||+|||+||++|+...|.+.+++++ ++.+ +.||.++..
T Consensus 57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~ 134 (184)
T TIGR01626 57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK 134 (184)
T ss_pred cCCCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence 3689999999999999999999999999754 2344 556665421
Q ss_pred -hhhc--CCcccc-E-EEEEeCCeEEEEeeCC-CHHHHHHHH
Q 032967 91 -ETTQ--HIRYTP-T-FHFYRDGERVDEMFGA-GEERLHDRL 126 (130)
Q Consensus 91 -~~~~--~v~~~P-t-~~~~~~g~~~~~~~g~-~~~~l~~~l 126 (130)
.+.. ++.++| | |++-++|+++.++.|. +.+++.+.+
T Consensus 135 g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 135 GAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred chHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 0111 677887 4 4555899999999999 888776644
No 110
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=99.15 E-value=1.3e-09 Score=65.70 Aligned_cols=93 Identities=20% Similarity=0.320 Sum_probs=69.7
Q ss_pred eeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCC-eEEEEEECCCChhhhc------CCc-cc
Q 032967 28 KTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPK-LSFIYADIDECPETTQ------HIR-YT 99 (130)
Q Consensus 28 ~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~-v~~~~id~~~~~~~~~------~v~-~~ 99 (130)
..+.+.+++++++. .+.+++++|+=+++.|+........|++.....++ +.++.+|+-+.+++.. +|. .-
T Consensus 2 ~~L~t~eql~~i~~--~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeS 79 (105)
T PF11009_consen 2 KPLTTEEQLEEILE--ESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHES 79 (105)
T ss_dssp -E--SHHHHHHHHH--H---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----S
T ss_pred CccCCHHHHHHHHH--hcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCC
Confidence 46789999999998 56799999999999999999999999999888774 9999999999988865 543 57
Q ss_pred cEEEEEeCCeEEEEeeCC--CHHHH
Q 032967 100 PTFHFYRDGERVDEMFGA--GEERL 122 (130)
Q Consensus 100 Pt~~~~~~g~~~~~~~g~--~~~~l 122 (130)
|.++++++|+.+...... +.+.|
T Consensus 80 PQ~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 80 PQVILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp SEEEEEETTEEEEEEEGGG-SHHHH
T ss_pred CcEEEEECCEEEEECccccCCHHhc
Confidence 999999999998766655 66665
No 111
>PLN02412 probable glutathione peroxidase
Probab=99.15 E-value=5.2e-10 Score=73.33 Aligned_cols=83 Identities=13% Similarity=0.177 Sum_probs=63.8
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCC-------C-hhh---------------h----cC-
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDE-------C-PET---------------T----QH- 95 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~-------~-~~~---------------~----~~- 95 (130)
.++++||.||++||+.|+...|.+.++.++|+ ++.++.|+++. . .++ . .+
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~ 107 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGK 107 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCC
Confidence 56999999999999999999999999999997 58888887642 1 111 0 00
Q ss_pred --------------------CccccEEEEE-eCCeEEEEeeCC-CHHHHHHHHhh
Q 032967 96 --------------------IRYTPTFHFY-RDGERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 96 --------------------v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
+.+.|+.+++ ++|+.+.++.|. +.+++...|+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~ 162 (167)
T PLN02412 108 NTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQN 162 (167)
T ss_pred CCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHH
Confidence 2335764444 899999999999 88888887764
No 112
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=99.14 E-value=5e-10 Score=70.39 Aligned_cols=90 Identities=21% Similarity=0.349 Sum_probs=55.9
Q ss_pred HHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc-----CCccccEEEEEe-CC
Q 032967 35 NHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ-----HIRYTPTFHFYR-DG 108 (130)
Q Consensus 35 ~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~-----~v~~~Pt~~~~~-~g 108 (130)
+..+.+. .......++.|..+||+.|+...|.+.++++..+++.+-.+..++++++.. +...+|+|+++. +|
T Consensus 31 ~~~~~l~--~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~ 108 (129)
T PF14595_consen 31 EQIEKLK--SIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDG 108 (129)
T ss_dssp HHHHHHH--T--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT-
T ss_pred HHHHHHH--hcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCC
Confidence 3344444 345667899999999999999999999999998888888888888877655 678999999995 56
Q ss_pred eEEEEeeCCCHHHHHHHHh
Q 032967 109 ERVDEMFGAGEERLHDRLW 127 (130)
Q Consensus 109 ~~~~~~~g~~~~~l~~~l~ 127 (130)
+.+.++... ++.+.+.+.
T Consensus 109 ~~lg~wger-P~~~~~~~~ 126 (129)
T PF14595_consen 109 KELGRWGER-PKEVQELVD 126 (129)
T ss_dssp -EEEEEESS--HHHH----
T ss_pred CEeEEEcCC-CHHHhhccc
Confidence 666665554 344444443
No 113
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.13 E-value=9.2e-10 Score=71.06 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=64.9
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECC--------CChhh---h---c---------------
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADID--------ECPET---T---Q--------------- 94 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~--------~~~~~---~---~--------------- 94 (130)
+++++||.||++||++|+...|.+.++.++|+ ++.++.|++. ....+ . .
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 67889999999999999999999999999987 6889888851 11111 0 0
Q ss_pred -----------CCcccc-----EEEEEeCCeEEEEeeCC-CHHHHHHHHhh
Q 032967 95 -----------HIRYTP-----TFHFYRDGERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 95 -----------~v~~~P-----t~~~~~~g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
...+.| +|++-++|+.+.++.|. +.++|...|++
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~ 151 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITA 151 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHH
Confidence 011367 57777999999999999 89999888865
No 114
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.13 E-value=9.8e-11 Score=71.74 Aligned_cols=39 Identities=21% Similarity=0.451 Sum_probs=33.7
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEE
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYA 84 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~i 84 (130)
++++++|+||++||++|+...|.++++.+.+. ++.++.+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v 59 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLA 59 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEE
Confidence 37899999999999999999999999988875 5666655
No 115
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.11 E-value=5.5e-10 Score=67.37 Aligned_cols=79 Identities=27% Similarity=0.636 Sum_probs=64.9
Q ss_pred CCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECC-CChhhhc--C--CccccEEEEEeCCeEEEEeeC--C-
Q 032967 47 KIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADID-ECPETTQ--H--IRYTPTFHFYRDGERVDEMFG--A- 117 (130)
Q Consensus 47 ~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~-~~~~~~~--~--v~~~Pt~~~~~~g~~~~~~~g--~- 117 (130)
++++++.||++||++|+.+.|.+.++++.+. .+.+..+|.. ..+.... + +..+|+++++.+|.......+ .
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 7899999999999999999999999999998 5999999997 6666665 6 889999999988876655655 4
Q ss_pred CHHHHHHH
Q 032967 118 GEERLHDR 125 (130)
Q Consensus 118 ~~~~l~~~ 125 (130)
....+...
T Consensus 112 ~~~~~~~~ 119 (127)
T COG0526 112 PKEALIDA 119 (127)
T ss_pred CHHHHHHH
Confidence 55555443
No 116
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.11 E-value=5.5e-10 Score=72.06 Aligned_cols=79 Identities=22% Similarity=0.238 Sum_probs=60.0
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCC-------Chh-h---------------h----c--
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDE-------CPE-T---------------T----Q-- 94 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~-------~~~-~---------------~----~-- 94 (130)
.++++||+||++||+ |+...|.++++.++|. ++.++.|+++. .++ + . .
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 579999999999999 9999999999999996 58888887642 111 0 0 0
Q ss_pred ------C--Ccccc------------EEEEEeCCeEEEEeeCC-CHHHHHHH
Q 032967 95 ------H--IRYTP------------TFHFYRDGERVDEMFGA-GEERLHDR 125 (130)
Q Consensus 95 ------~--v~~~P------------t~~~~~~g~~~~~~~g~-~~~~l~~~ 125 (130)
+ +.++| +|++-++|+++.++.|. +.++|.+.
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 0 13456 45555899999999999 88888764
No 117
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=4e-09 Score=67.26 Aligned_cols=85 Identities=24% Similarity=0.407 Sum_probs=67.3
Q ss_pred hhcCCCcEEEEEeCCCCHhHHhhHHHH---HHHHhhCC-CeEEEEEECCCC----------------hhhhc--CCcccc
Q 032967 43 IKSSKIPAVINYGASWCGVCNQILPAF---CKLSNNFP-KLSFIYADIDEC----------------PETTQ--HIRYTP 100 (130)
Q Consensus 43 ~~~~~~~~lv~f~s~~C~~C~~~~~~~---~~l~~~~~-~v~~~~id~~~~----------------~~~~~--~v~~~P 100 (130)
+...++..+++|.++.|+.|.++...+ .++.+.+. .+.++++++... .++++ +++++|
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstP 117 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTP 117 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCc
Confidence 346889999999999999999998776 44555555 588888887533 24555 899999
Q ss_pred EEEEE-eCCeEEEEeeCC-CHHHHHHHHh
Q 032967 101 TFHFY-RDGERVDEMFGA-GEERLHDRLW 127 (130)
Q Consensus 101 t~~~~-~~g~~~~~~~g~-~~~~l~~~l~ 127 (130)
+|++| ++|+.+..+.|+ +++++..-++
T Consensus 118 tfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 118 TFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred eEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 99999 577999999999 8988876553
No 118
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=99.09 E-value=1.9e-09 Score=66.59 Aligned_cols=93 Identities=16% Similarity=0.385 Sum_probs=60.4
Q ss_pred cChHHHHHHHHHhhcCCCcEEEEEeCC-------CCHhHHhhHHHHHHHHhhCC-CeEEEEEECCC-----Chh--hh--
Q 032967 31 SSDQNHKDILLQIKSSKIPAVINYGAS-------WCGVCNQILPAFCKLSNNFP-KLSFIYADIDE-----CPE--TT-- 93 (130)
Q Consensus 31 ~~~~~~~~~i~~~~~~~~~~lv~f~s~-------~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~-----~~~--~~-- 93 (130)
...++|.+.+.....++++++|+|+++ ||+.|+...|.+.+.....+ +..++.+.+.. ++. ..
T Consensus 3 ~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~ 82 (119)
T PF06110_consen 3 RGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTD 82 (119)
T ss_dssp ECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH-
T ss_pred cCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEc
Confidence 456788888875456779999999974 99999999999999877766 78888888752 222 11
Q ss_pred -c-CCccccEEEEEeCCeEEEEeeCC---CHHHHHHHH
Q 032967 94 -Q-HIRYTPTFHFYRDGERVDEMFGA---GEERLHDRL 126 (130)
Q Consensus 94 -~-~v~~~Pt~~~~~~g~~~~~~~g~---~~~~l~~~l 126 (130)
. ++.++||++-+..+ .++.+. +.+.|..++
T Consensus 83 p~~~l~~IPTLi~~~~~---~rL~e~e~~~~~lv~~~~ 117 (119)
T PF06110_consen 83 PDLKLKGIPTLIRWETG---ERLVEEECLNEDLVEMFF 117 (119)
T ss_dssp -CC---SSSEEEECTSS----EEEHHHHH-HHHHHHHH
T ss_pred ceeeeeecceEEEECCC---CccchhhhccHHHHHHHh
Confidence 1 78999999999887 445555 444444443
No 119
>PF13728 TraF: F plasmid transfer operon protein
Probab=99.08 E-value=3.4e-09 Score=72.12 Aligned_cols=87 Identities=18% Similarity=0.316 Sum_probs=66.8
Q ss_pred HHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCC-----------Chhhhc--CCccccEEE
Q 032967 37 KDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDE-----------CPETTQ--HIRYTPTFH 103 (130)
Q Consensus 37 ~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~-----------~~~~~~--~v~~~Pt~~ 103 (130)
++.|. ...++..|++||.+.|+.|+.+.|.+..++++| ++.++.|++|. +..++. +|..+|+++
T Consensus 112 ~~~l~--~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~ 188 (215)
T PF13728_consen 112 DKALK--QLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALF 188 (215)
T ss_pred HHHHH--HHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEE
Confidence 44444 346788999999999999999999999999999 67777777763 244444 899999987
Q ss_pred EEeC-C-eEEEEeeCC-CHHHHHHHH
Q 032967 104 FYRD-G-ERVDEMFGA-GEERLHDRL 126 (130)
Q Consensus 104 ~~~~-g-~~~~~~~g~-~~~~l~~~l 126 (130)
++.. + +...-..|. +.++|.+.|
T Consensus 189 Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 189 LVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEECCCCeEEEEeeecCCHHHHHHhh
Confidence 7754 3 355566788 999998765
No 120
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.03 E-value=5.8e-09 Score=68.45 Aligned_cols=83 Identities=16% Similarity=0.256 Sum_probs=61.6
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCC-------h-hh---------------------hc
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDEC-------P-ET---------------------TQ 94 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~-------~-~~---------------------~~ 94 (130)
+++++|++||++||+.|....+.+.++.++|+ ++.++.|.++.. + .+ ..
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 67899999999999999999999999999987 699999987642 1 11 11
Q ss_pred --CCccccEEEEE-eCCeEEEEee---------CC-CHHHHHHHHhh
Q 032967 95 --HIRYTPTFHFY-RDGERVDEMF---------GA-GEERLHDRLWL 128 (130)
Q Consensus 95 --~v~~~Pt~~~~-~~g~~~~~~~---------g~-~~~~l~~~l~~ 128 (130)
++..+|+++++ ++|+++.+.. +. +..++++.|+.
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 150 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDA 150 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHH
Confidence 57788988777 4777664421 22 45677776653
No 121
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=8.8e-09 Score=63.27 Aligned_cols=99 Identities=19% Similarity=0.356 Sum_probs=82.1
Q ss_pred eeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCC-eEEEEEECCCChhhhc--CCccccEEE
Q 032967 27 LKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPK-LSFIYADIDECPETTQ--HIRYTPTFH 103 (130)
Q Consensus 27 ~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~-v~~~~id~~~~~~~~~--~v~~~Pt~~ 103 (130)
+.++.|.++.++.+. ...++.++|-|.-+|-+.|..+...+.++++...+ ..++-+|+++.+++.+ ++...|+++
T Consensus 5 Lp~L~s~~~VdqaI~--~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvm 82 (142)
T KOG3414|consen 5 LPTLHSGWEVDQAIL--STEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVM 82 (142)
T ss_pred ccccccHHHHHHHHh--cccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEE
Confidence 456788999999998 67889999999999999999999999999999875 7788899999999888 999999999
Q ss_pred EEeCCeEEE---------EeeCC--CHHHHHHHHh
Q 032967 104 FYRDGERVD---------EMFGA--GEERLHDRLW 127 (130)
Q Consensus 104 ~~~~g~~~~---------~~~g~--~~~~l~~~l~ 127 (130)
+|-+++... ++.+. +++++++.+.
T Consensus 83 fFfn~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie 117 (142)
T KOG3414|consen 83 FFFNNKHMKIDLGTGDNNKINFAFEDKQEFIDIIE 117 (142)
T ss_pred EEEcCceEEEeeCCCCCceEEEEeccHHHHHHHHH
Confidence 998887543 33344 5666666554
No 122
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.02 E-value=4.4e-09 Score=59.87 Aligned_cols=68 Identities=25% Similarity=0.554 Sum_probs=49.8
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc-------CCccccEEEEEeCCeEEEEeeCCCHHHHH
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ-------HIRYTPTFHFYRDGERVDEMFGAGEERLH 123 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~-------~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~ 123 (130)
++.||++||++|+.+.+.+.++. +.+-.+|+++.+.... ++.++|++ ++.+|..+ ...+.+++.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~-----~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l---~~~~~~~~~ 72 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG-----AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFL---TNPSAAQVK 72 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-----CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEe---cCCCHHHHH
Confidence 67899999999999999887663 4455688887665432 67799997 46777543 345777887
Q ss_pred HHHh
Q 032967 124 DRLW 127 (130)
Q Consensus 124 ~~l~ 127 (130)
+.|+
T Consensus 73 ~~l~ 76 (77)
T TIGR02200 73 AKLQ 76 (77)
T ss_pred HHhh
Confidence 7765
No 123
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.99 E-value=6.6e-09 Score=69.07 Aligned_cols=83 Identities=14% Similarity=0.178 Sum_probs=61.6
Q ss_pred CCCcE-EEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCC----C-------------------hhhh----c-
Q 032967 46 SKIPA-VINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDE----C-------------------PETT----Q- 94 (130)
Q Consensus 46 ~~~~~-lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~----~-------------------~~~~----~- 94 (130)
.++++ |+.+|++||++|+...|.+.++.++|+ ++.++.|+++. . +.+. .
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g 118 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG 118 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence 56654 556799999999999999999999987 58888887631 0 0000 0
Q ss_pred ----------------------CCccccE----EEEEeCCeEEEEeeCC-CHHHHHHHHhh
Q 032967 95 ----------------------HIRYTPT----FHFYRDGERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 95 ----------------------~v~~~Pt----~~~~~~g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
++.++|+ |++-++|+++.++.|. +.+++.+.|.+
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ 179 (183)
T PTZ00256 119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEK 179 (183)
T ss_pred CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHH
Confidence 1225683 7777899999999999 88888777764
No 124
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.97 E-value=1.7e-10 Score=77.83 Aligned_cols=95 Identities=21% Similarity=0.385 Sum_probs=80.4
Q ss_pred ceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCChhhhc--CCccccE
Q 032967 26 HLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDECPETTQ--HIRYTPT 101 (130)
Q Consensus 26 ~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~~~~~--~v~~~Pt 101 (130)
.+..+ +.+++...+. .-+++.|+++||+.|....|.+..++.--. +|.+.+||++.++.+.. -+...||
T Consensus 25 ~~~~~-~eenw~~~l~------gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLpt 97 (248)
T KOG0913|consen 25 KLTRI-DEENWKELLT------GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPT 97 (248)
T ss_pred eeEEe-cccchhhhhc------hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecce
Confidence 44444 6788988875 668999999999999999999999875433 69999999999999987 6789999
Q ss_pred EEEEeCCeEEEEeeCC-CHHHHHHHHhh
Q 032967 102 FHFYRDGERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 102 ~~~~~~g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
+...++|+ ..+|.|. +..++++++..
T Consensus 98 IYHvkDGe-FrrysgaRdk~dfisf~~~ 124 (248)
T KOG0913|consen 98 IYHVKDGE-FRRYSGARDKNDFISFEEH 124 (248)
T ss_pred EEEeeccc-cccccCcccchhHHHHHHh
Confidence 99999995 6789999 99999998764
No 125
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.97 E-value=1.1e-08 Score=58.58 Aligned_cols=70 Identities=16% Similarity=0.317 Sum_probs=56.1
Q ss_pred EEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc-CCccccEEEEEeCCeEEEEeeC-C-CHHHHHHHHh
Q 032967 53 NYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ-HIRYTPTFHFYRDGERVDEMFG-A-GEERLHDRLW 127 (130)
Q Consensus 53 ~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~-~v~~~Pt~~~~~~g~~~~~~~g-~-~~~~l~~~l~ 127 (130)
.+++++|++|..+...++++...++ +.+-.+|....+.+.. ++.++|++++ ||+ .++.| . +.++|+++|+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~~~ygv~~vPalvI--ng~--~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEIEKYGVMSVPALVI--NGK--VVFVGRVPSKEELKELLE 76 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHHHHTT-SSSSEEEE--TTE--EEEESS--HHHHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHHHHcCCCCCCEEEE--CCE--EEEEecCCCHHHHHHHhC
Confidence 4478889999999999999999994 7777778877777755 9999999966 786 44788 5 8999999884
No 126
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.97 E-value=5.1e-09 Score=56.43 Aligned_cols=58 Identities=24% Similarity=0.517 Sum_probs=49.1
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhh----c-CCccccEEEEEeCC
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETT----Q-HIRYTPTFHFYRDG 108 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~----~-~v~~~Pt~~~~~~g 108 (130)
++.||++||+.|+.+.+.+.++....+++.+..++++...... . ++.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998444458999999999877643 2 88899999999877
No 127
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.93 E-value=6.2e-08 Score=60.18 Aligned_cols=98 Identities=22% Similarity=0.362 Sum_probs=75.3
Q ss_pred eeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCC-eEEEEEECCCChhhhc--CCcccc-EE
Q 032967 27 LKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPK-LSFIYADIDECPETTQ--HIRYTP-TF 102 (130)
Q Consensus 27 ~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~-v~~~~id~~~~~~~~~--~v~~~P-t~ 102 (130)
+.++.+..+.++.|. .+.++.++|.|..+|-+.|.++...+.+++++.++ ..++.+|+++.+++.. .+. .| |+
T Consensus 2 L~~L~s~~~VDqAI~--~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tv 78 (133)
T PF02966_consen 2 LPHLHSGWHVDQAIL--SEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTV 78 (133)
T ss_dssp SEEE-SHHHHHHHHH--H-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEE
T ss_pred CcccCccchHHHHHh--ccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEE
Confidence 457889999999998 67899999999999999999999999999998875 8888999999999876 776 88 57
Q ss_pred EEEeCCeEEE---------EeeCC--CHHHHHHHHh
Q 032967 103 HFYRDGERVD---------EMFGA--GEERLHDRLW 127 (130)
Q Consensus 103 ~~~~~g~~~~---------~~~g~--~~~~l~~~l~ 127 (130)
++|.+|+.+. +..+. +.+++.+.+.
T Consensus 79 mFF~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie 114 (133)
T PF02966_consen 79 MFFFRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIE 114 (133)
T ss_dssp EEEETTEEEEEESSSSSSSSBCS--SCHHHHHHHHH
T ss_pred EEEecCeEEEEEecCCCccEEEEEcCcHHHHHHHHH
Confidence 7776777553 23333 4666665543
No 128
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.92 E-value=6e-08 Score=59.92 Aligned_cols=92 Identities=18% Similarity=0.202 Sum_probs=71.1
Q ss_pred HHHHHHHHhhcCCCcEEEEEeCC----CCHhHHhhH--HHHHHHHhhCCCeEEEEEECCCChh--hhc--CCccccEEEE
Q 032967 35 NHKDILLQIKSSKIPAVINYGAS----WCGVCNQIL--PAFCKLSNNFPKLSFIYADIDECPE--TTQ--HIRYTPTFHF 104 (130)
Q Consensus 35 ~~~~~i~~~~~~~~~~lv~f~s~----~C~~C~~~~--~~~~~l~~~~~~v~~~~id~~~~~~--~~~--~v~~~Pt~~~ 104 (130)
.|.+.+..++.+.|+++|++|++ ||..|+... |.+.++-+. +..+...|++.... ++. ++.++|++.+
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~ 82 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAM 82 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEE
Confidence 46777777788999999999999 889998653 555555543 58888899986543 343 8899999888
Q ss_pred Ee--CC--eEEEEeeCC-CHHHHHHHHhh
Q 032967 105 YR--DG--ERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 105 ~~--~g--~~~~~~~g~-~~~~l~~~l~~ 128 (130)
+. ++ +.+.++.|. ++++|...|+.
T Consensus 83 l~~~~~~~~vv~~i~G~~~~~~ll~~L~~ 111 (116)
T cd02991 83 IMLKDNRMTIVGRLEGLIQPEDLINRLTF 111 (116)
T ss_pred EEecCCceEEEEEEeCCCCHHHHHHHHHH
Confidence 72 33 468899999 99999988875
No 129
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.90 E-value=1.8e-08 Score=63.74 Aligned_cols=81 Identities=15% Similarity=0.118 Sum_probs=61.5
Q ss_pred CCCcEEEEEe-CCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCChhh---------------------hc--CCccc
Q 032967 46 SKIPAVINYG-ASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDECPET---------------------TQ--HIRYT 99 (130)
Q Consensus 46 ~~~~~lv~f~-s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~~~---------------------~~--~v~~~ 99 (130)
.+++++|.|| +.||+.|....+.+.++.+.+. ++.++.|..+....+ .. ++...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 5789999999 6899999999999999988775 688888877644322 11 44555
Q ss_pred ---------cEEEEEe-CCeEEEEeeCC-CHHHHHHHH
Q 032967 100 ---------PTFHFYR-DGERVDEMFGA-GEERLHDRL 126 (130)
Q Consensus 100 ---------Pt~~~~~-~g~~~~~~~g~-~~~~l~~~l 126 (130)
|+.+++. +|+++..+.|. ..+.+.+.+
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 8777774 79999999999 777766654
No 130
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=3.1e-08 Score=60.40 Aligned_cols=83 Identities=16% Similarity=0.313 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEEeC--------CCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCChhh-------hc-
Q 032967 32 SDQNHKDILLQIKSSKIPAVINYGA--------SWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPET-------TQ- 94 (130)
Q Consensus 32 ~~~~~~~~i~~~~~~~~~~lv~f~s--------~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~~~~-------~~- 94 (130)
-.++|.+.++... +++.++|+|++ +|||.|.++.|.+.+.-+..+ ++.|+.+++..-+.- ..
T Consensus 11 g~e~~~~~~~~~~-n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d 89 (128)
T KOG3425|consen 11 GYESFEETLKNVE-NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKD 89 (128)
T ss_pred hHHHHHHHHHHHh-CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccC
Confidence 4567777777543 45559999988 599999999999998888777 899999998754321 11
Q ss_pred -CC-ccccEEEEEeCCeEEEEeeCC
Q 032967 95 -HI-RYTPTFHFYRDGERVDEMFGA 117 (130)
Q Consensus 95 -~v-~~~Pt~~~~~~g~~~~~~~g~ 117 (130)
++ .++||++-++++ ..++.|.
T Consensus 90 ~~~lt~vPTLlrw~~~--~~rL~~~ 112 (128)
T KOG3425|consen 90 PGILTAVPTLLRWKRQ--PQRLDGL 112 (128)
T ss_pred CCceeecceeeEEcCc--cccchHh
Confidence 44 899999998863 3444444
No 131
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.6e-09 Score=72.83 Aligned_cols=92 Identities=25% Similarity=0.373 Sum_probs=79.5
Q ss_pred ceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc--CCccccEEE
Q 032967 26 HLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFH 103 (130)
Q Consensus 26 ~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~--~v~~~Pt~~ 103 (130)
.+..+...++| +. .+++..+++||++||..|.++...+..+++..+++.+++++.+..++++. .+..+|.+.
T Consensus 2 ~v~~i~~~~~f---~~---~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~ 75 (227)
T KOG0911|consen 2 TVQFIVFQEQF---LD---QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFV 75 (227)
T ss_pred CceeehhHHHH---HH---hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceee
Confidence 34556667777 43 38899999999999999999999999999999999999999999999998 899999999
Q ss_pred EEeCCeEEEEeeCCCHHHHH
Q 032967 104 FYRDGERVDEMFGAGEERLH 123 (130)
Q Consensus 104 ~~~~g~~~~~~~g~~~~~l~ 123 (130)
++..|+.+.++.|..+..+.
T Consensus 76 ~~~~~~~v~~l~~~~~~~~~ 95 (227)
T KOG0911|consen 76 FFFLGEKVDRLSGADPPFLV 95 (227)
T ss_pred eeecchhhhhhhccCcHHHH
Confidence 99999999999998433333
No 132
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.88 E-value=5.8e-08 Score=67.46 Aligned_cols=82 Identities=15% Similarity=0.316 Sum_probs=62.9
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCC--hh---------hhc--CCccccEEEEEe-C-CeE
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDEC--PE---------TTQ--HIRYTPTFHFYR-D-GER 110 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~--~~---------~~~--~v~~~Pt~~~~~-~-g~~ 110 (130)
.++..|++||.+.|++|+.+.|.++.++++| ++.++.|++|.. +. .+. ++..+|+++++. + ++.
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~y-gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEY-GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 5568999999999999999999999999999 566666666644 22 222 789999877774 3 344
Q ss_pred EEEeeCC-CHHHHHHHHhh
Q 032967 111 VDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 111 ~~~~~g~-~~~~l~~~l~~ 128 (130)
.--..|. +.++|.+.|..
T Consensus 228 ~pv~~G~iS~deL~~Ri~~ 246 (256)
T TIGR02739 228 SPLAYGFISQDELKERILN 246 (256)
T ss_pred EEEeeccCCHHHHHHHHHH
Confidence 4566788 99999887753
No 133
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.87 E-value=3.6e-08 Score=57.50 Aligned_cols=72 Identities=18% Similarity=0.296 Sum_probs=54.2
Q ss_pred EEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCCh----hhhc----CCccccEEEEEeCCeEEEEeeCCCHHH
Q 032967 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECP----ETTQ----HIRYTPTFHFYRDGERVDEMFGAGEER 121 (130)
Q Consensus 50 ~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~----~~~~----~v~~~Pt~~~~~~g~~~~~~~g~~~~~ 121 (130)
-|+.|+.+||+.|+.+.+.++++..++.++.+..+|++.++ ++.. ++.++|++++ +|+.+. ..++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~ig-----g~~~ 74 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHIG-----GCTD 74 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEEc-----CHHH
Confidence 47889999999999999999999987778899999998753 3332 3578999764 776542 3455
Q ss_pred HHHHHhh
Q 032967 122 LHDRLWL 128 (130)
Q Consensus 122 l~~~l~~ 128 (130)
|.++++.
T Consensus 75 ~~~~~~~ 81 (85)
T PRK11200 75 FEAYVKE 81 (85)
T ss_pred HHHHHHH
Confidence 6655554
No 134
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.84 E-value=5.2e-08 Score=54.56 Aligned_cols=66 Identities=23% Similarity=0.349 Sum_probs=49.0
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc------CCccccEEEEEeCCeEEEEeeCCCHHHHHH
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ------HIRYTPTFHFYRDGERVDEMFGAGEERLHD 124 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~------~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~ 124 (130)
++.|+++||++|+.+...+.+. ++.+..+|++..+.... ++.++|++++ +| ..+.|.+.++|++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~---~~i~g~~~~~l~~ 71 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD---EHLSGFRPDKLRA 71 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC---EEEecCCHHHHHh
Confidence 5789999999999988877663 56777788876654332 5789999876 44 3456778888887
Q ss_pred HH
Q 032967 125 RL 126 (130)
Q Consensus 125 ~l 126 (130)
+|
T Consensus 72 ~~ 73 (73)
T cd02976 72 LL 73 (73)
T ss_pred hC
Confidence 64
No 135
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.75 E-value=2.1e-07 Score=64.44 Aligned_cols=81 Identities=15% Similarity=0.258 Sum_probs=61.0
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCC--Chhh---------h-c-CCccccEEEEEeC--CeE
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDE--CPET---------T-Q-HIRYTPTFHFYRD--GER 110 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~--~~~~---------~-~-~v~~~Pt~~~~~~--g~~ 110 (130)
.++..|++||.+.|++|+.+.|.++.++++| ++.++-|++|. .+.+ + . +|..+|+++++.. ++.
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTY-GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 4568999999999999999999999999999 44554444443 3322 2 2 7889999887753 345
Q ss_pred EEEeeCC-CHHHHHHHHh
Q 032967 111 VDEMFGA-GEERLHDRLW 127 (130)
Q Consensus 111 ~~~~~g~-~~~~l~~~l~ 127 (130)
.--..|. +.++|.+.|.
T Consensus 221 ~pv~~G~iS~deL~~Ri~ 238 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFL 238 (248)
T ss_pred EEEeeccCCHHHHHHHHH
Confidence 5567788 9999988775
No 136
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.74 E-value=6.3e-08 Score=64.86 Aligned_cols=105 Identities=14% Similarity=0.212 Sum_probs=84.8
Q ss_pred CCCceeeccChHHHHHHHHHhhc-CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc-CCcccc
Q 032967 23 HHGHLKTASSDQNHKDILLQIKS-SKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ-HIRYTP 100 (130)
Q Consensus 23 ~~~~~~~i~~~~~~~~~i~~~~~-~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~-~v~~~P 100 (130)
..+.+.++.+..+|.+.|+ .+ +-..++|+.|-+....|..+...+.=|+.+||.++|+++-.+.-..-.. ...++|
T Consensus 136 ~~~~V~El~~gkqfld~id--ke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~gas~~F~~n~lP 213 (273)
T KOG3171|consen 136 RYGFVYELETGKQFLDTID--KELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTGASDRFSLNVLP 213 (273)
T ss_pred ccceEEEeccchhHHHHHh--cccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccccchhhhcccCCc
Confidence 3568899999999999997 33 4466889999999999999999999999999999999998775443333 778999
Q ss_pred EEEEEeCCeEEEEeeCC--------CHHHHHHHHhhc
Q 032967 101 TFHFYRDGERVDEMFGA--------GEERLHDRLWLH 129 (130)
Q Consensus 101 t~~~~~~g~~~~~~~g~--------~~~~l~~~l~~~ 129 (130)
|+++|++|+.+..++.. -..+|..||+.+
T Consensus 214 ~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 214 TLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred eEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 99999999987655432 345677777765
No 137
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.73 E-value=8.9e-08 Score=59.20 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=40.2
Q ss_pred CCCcEEEEEeCC-CCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCCh
Q 032967 46 SKIPAVINYGAS-WCGVCNQILPAFCKLSNNFP--KLSFIYADIDECP 90 (130)
Q Consensus 46 ~~~~~lv~f~s~-~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~ 90 (130)
.++++||.||+. ||+.|....+.+.++..+|+ ++.++.|..+...
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~ 71 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPE 71 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccccccc
Confidence 569999999999 99999999999999998876 7999999887654
No 138
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.73 E-value=1.8e-07 Score=59.50 Aligned_cols=81 Identities=14% Similarity=0.066 Sum_probs=58.5
Q ss_pred CCCcEEEEEeCCC-CHhHHhhHHHHHHHHhhCCCeEEEEEECCCCh-----------------------hhhc--CCcc-
Q 032967 46 SKIPAVINYGASW-CGVCNQILPAFCKLSNNFPKLSFIYADIDECP-----------------------ETTQ--HIRY- 98 (130)
Q Consensus 46 ~~~~~lv~f~s~~-C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~-----------------------~~~~--~v~~- 98 (130)
.++++||+||+.| |++|+...|.+.++.++++++.++.|+.+... .+.. ++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~ 104 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIK 104 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeec
Confidence 5689999999998 69999999999999999988999988886321 0111 3321
Q ss_pred -----ccEEEEE-eCCeEEEEeeCC---CHHHHHHHH
Q 032967 99 -----TPTFHFY-RDGERVDEMFGA---GEERLHDRL 126 (130)
Q Consensus 99 -----~Pt~~~~-~~g~~~~~~~g~---~~~~l~~~l 126 (130)
.|+.+++ ++|+++....|. ...++.+.|
T Consensus 105 ~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~ 141 (143)
T cd03014 105 DLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAAL 141 (143)
T ss_pred cCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHh
Confidence 5765555 689988888765 344555444
No 139
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.68 E-value=3.3e-07 Score=70.41 Aligned_cols=76 Identities=18% Similarity=0.331 Sum_probs=66.1
Q ss_pred CCcE-EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc--CCccccEEEEEeCCeEEEEeeCC-CHHHH
Q 032967 47 KIPA-VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRDGERVDEMFGA-GEERL 122 (130)
Q Consensus 47 ~~~~-lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l 122 (130)
++++ +-.|.+++|++|..+...+.+++...++|..-.+|...+++++. +|.++|++++ ||+.+ +.|. +.++|
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~--~~G~~~~~~~ 550 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQV--YFGKKTIEEM 550 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCEEE--EeeCCCHHHH
Confidence 3554 55678999999999999999999999899999999999999995 9999999887 77644 5688 99999
Q ss_pred HHHH
Q 032967 123 HDRL 126 (130)
Q Consensus 123 ~~~l 126 (130)
.++|
T Consensus 551 ~~~~ 554 (555)
T TIGR03143 551 LELI 554 (555)
T ss_pred HHhh
Confidence 9987
No 140
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.68 E-value=6.3e-08 Score=62.13 Aligned_cols=66 Identities=17% Similarity=0.456 Sum_probs=47.0
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC----CeEEEEEECCCChhh-------------------------hc--
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFP----KLSFIYADIDECPET-------------------------TQ-- 94 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~----~v~~~~id~~~~~~~-------------------------~~-- 94 (130)
.++.+.++|.+.||++||.+.|.+.++.++.. .+.++-|+.|...+- ..
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 67999999999999999999999888765543 245555555543211 11
Q ss_pred CCccccEEEEEe-CCeEE
Q 032967 95 HIRYTPTFHFYR-DGERV 111 (130)
Q Consensus 95 ~v~~~Pt~~~~~-~g~~~ 111 (130)
.|.++|++.+.+ +|..+
T Consensus 112 ~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVV 129 (157)
T ss_pred ccCcCceeEEecCCCCEe
Confidence 688999987775 55444
No 141
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.67 E-value=5.4e-07 Score=59.05 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=38.3
Q ss_pred CCCcEEEEEeCCC-CHhHHhhHHHHHHHHhhCCCeEEEEEECCC
Q 032967 46 SKIPAVINYGASW-CGVCNQILPAFCKLSNNFPKLSFIYADIDE 88 (130)
Q Consensus 46 ~~~~~lv~f~s~~-C~~C~~~~~~~~~l~~~~~~v~~~~id~~~ 88 (130)
.++++||.||++| |++|....|.+.++.+++.++.++.|+.+.
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~ 86 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADL 86 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 5789999999999 999999999999999998788888887764
No 142
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.66 E-value=2e-07 Score=60.55 Aligned_cols=76 Identities=21% Similarity=0.364 Sum_probs=47.2
Q ss_pred HHHHHhhcCCCcEEEEEeCCCCHhHHhhHH-HH--HHHHhhCC-CeEEEEEECCCChhhhc----------CCccccEEE
Q 032967 38 DILLQIKSSKIPAVINYGASWCGVCNQILP-AF--CKLSNNFP-KLSFIYADIDECPETTQ----------HIRYTPTFH 103 (130)
Q Consensus 38 ~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~-~~--~~l~~~~~-~v~~~~id~~~~~~~~~----------~v~~~Pt~~ 103 (130)
+.++.+...+++++|.++++||.-|+.|.. .| .++++.+. +..-+++|.++.|++.. +..|+|+.+
T Consensus 28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~v 107 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTV 107 (163)
T ss_dssp HHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEE
T ss_pred HHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceE
Confidence 445555679999999999999999998874 33 33444443 46777899999988743 567999866
Q ss_pred EE-eCCeEEEE
Q 032967 104 FY-RDGERVDE 113 (130)
Q Consensus 104 ~~-~~g~~~~~ 113 (130)
++ .+|+.+..
T Consensus 108 fltPdg~p~~~ 118 (163)
T PF03190_consen 108 FLTPDGKPFFG 118 (163)
T ss_dssp EE-TTS-EEEE
T ss_pred EECCCCCeeee
Confidence 66 57776654
No 143
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.65 E-value=2.3e-07 Score=63.92 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=56.2
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECC--------------------------------------
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADID-------------------------------------- 87 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~-------------------------------------- 87 (130)
+++..|+.|..+.|++|+++.+.+.++.+. ++.+..+..-
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~ 183 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS 183 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence 457789999999999999999999887542 3444332111
Q ss_pred ------CChhhhc--CCccccEEEEEeCCeEEEEeeCC-CHHHHHHHHhhc
Q 032967 88 ------ECPETTQ--HIRYTPTFHFYRDGERVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 88 ------~~~~~~~--~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 129 (130)
++..++. +|.++|+++ +.+|+.+ .|. +.++|.++|+.+
T Consensus 184 c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 184 CDVDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccchHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 0011122 789999998 6788654 798 999999999875
No 144
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.62 E-value=1.7e-07 Score=54.15 Aligned_cols=58 Identities=19% Similarity=0.378 Sum_probs=42.6
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChh-----hhc--CCccccEEEEEeCCeEE
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPE-----TTQ--HIRYTPTFHFYRDGERV 111 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~-----~~~--~v~~~Pt~~~~~~g~~~ 111 (130)
|+.|+++||++|+.+.+.+.++.-. +.+.++.+|.+.+.. +.. ++.++|++++ +|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 5789999999999999999998622 147788788765543 222 7789999854 67543
No 145
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.59 E-value=6.5e-07 Score=57.68 Aligned_cols=79 Identities=5% Similarity=-0.034 Sum_probs=56.0
Q ss_pred CCCcEEEEEeCC-CCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCChhh---------------------hc--CCccc
Q 032967 46 SKIPAVINYGAS-WCGVCNQILPAFCKLSNNFP--KLSFIYADIDECPET---------------------TQ--HIRYT 99 (130)
Q Consensus 46 ~~~~~lv~f~s~-~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~~~---------------------~~--~v~~~ 99 (130)
+++++||.||+. ||+.|....+.+.++.+++. ++.++.|+.+....+ .. ++.+.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGE 108 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcc
Confidence 668999999976 68889999999998888875 688888877643322 11 33222
Q ss_pred ------------cEEEEE-eCCeEEEEeeCC-CHHHHHH
Q 032967 100 ------------PTFHFY-RDGERVDEMFGA-GEERLHD 124 (130)
Q Consensus 100 ------------Pt~~~~-~~g~~~~~~~g~-~~~~l~~ 124 (130)
|+.+++ ++|+++..+.|. ..+.+.+
T Consensus 109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~ 147 (154)
T PRK09437 109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDV 147 (154)
T ss_pred cccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHH
Confidence 554455 699999999988 5554333
No 146
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.58 E-value=7.4e-07 Score=59.43 Aligned_cols=83 Identities=11% Similarity=0.019 Sum_probs=58.2
Q ss_pred CCCcEEEEEe-CCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCCh-------------------------hhhc--C
Q 032967 46 SKIPAVINYG-ASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDECP-------------------------ETTQ--H 95 (130)
Q Consensus 46 ~~~~~lv~f~-s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~-------------------------~~~~--~ 95 (130)
.++++||+|| ++||+.|....+.+.++.+++. ++.++.|.++... .++. +
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 5789999999 9999999999999999888875 6777777766421 1111 3
Q ss_pred Cc------cccEEEEE-eCCeEEEEeeCC-----CHHHHHHHHhh
Q 032967 96 IR------YTPTFHFY-RDGERVDEMFGA-----GEERLHDRLWL 128 (130)
Q Consensus 96 v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~l~~ 128 (130)
+. ..|+.+++ ++|.+...+.+. ..+++.+.|+.
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 43 34855555 688877765332 56777777654
No 147
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.57 E-value=8.2e-07 Score=58.40 Aligned_cols=83 Identities=11% Similarity=0.020 Sum_probs=59.4
Q ss_pred CCCcEEEEEe-CCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCChh----------------h------------hc
Q 032967 46 SKIPAVINYG-ASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDECPE----------------T------------TQ 94 (130)
Q Consensus 46 ~~~~~lv~f~-s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~~----------------~------------~~ 94 (130)
.++++||.|| ++||+.|....+.+.++.++|. ++.++.|..+.... + ..
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 5689999999 8999999999999999998886 68888887764211 1 01
Q ss_pred --CCc------cccEEEEE-eCCeEEEEeeCC-----CHHHHHHHHhh
Q 032967 95 --HIR------YTPTFHFY-RDGERVDEMFGA-----GEERLHDRLWL 128 (130)
Q Consensus 95 --~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~l~~ 128 (130)
++. ..|+.+++ ++|++...+.+. +.+++.+.|+.
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~ 155 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDA 155 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 333 35666655 588887777543 45677777754
No 148
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.56 E-value=8e-07 Score=51.98 Aligned_cols=71 Identities=21% Similarity=0.333 Sum_probs=51.0
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCCh----hhhc--C--CccccEEEEEeCCeEEEEeeCCCHHHH
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECP----ETTQ--H--IRYTPTFHFYRDGERVDEMFGAGEERL 122 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~----~~~~--~--v~~~Pt~~~~~~g~~~~~~~g~~~~~l 122 (130)
++.|+.+||++|.++...+.++...++++.+..+|++... ++.. + ..++|++++ +|+.+ | ..++|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i----g-G~~dl 74 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV----G-GCTDF 74 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe----c-CHHHH
Confidence 6789999999999999999998777667788888887543 2332 3 378999864 66543 2 34566
Q ss_pred HHHHhh
Q 032967 123 HDRLWL 128 (130)
Q Consensus 123 ~~~l~~ 128 (130)
.+++++
T Consensus 75 ~~~~~~ 80 (86)
T TIGR02183 75 EQLVKE 80 (86)
T ss_pred HHHHHh
Confidence 666554
No 149
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.56 E-value=6.2e-07 Score=59.64 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=36.2
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECC
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADID 87 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~ 87 (130)
.++++||.|||+||+.|.+ .+.++++.++|+ ++.++.+.++
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 6799999999999999975 889999999987 6889888874
No 150
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.52 E-value=9.7e-07 Score=47.99 Aligned_cols=53 Identities=23% Similarity=0.405 Sum_probs=42.0
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc------CCccccEEEEEeCCeE
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ------HIRYTPTFHFYRDGER 110 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~------~v~~~Pt~~~~~~g~~ 110 (130)
++.|+.+||+.|+.+...|++. ++.+-.+|++..++... +..++|++++ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 5789999999999999887443 68888899998765433 7889999886 6654
No 151
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.52 E-value=1.8e-06 Score=65.85 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=67.4
Q ss_pred CCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc--CCccccEEEEEeCCeEEEEeeCC-CHHHHH
Q 032967 47 KIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRDGERVDEMFGA-GEERLH 123 (130)
Q Consensus 47 ~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~ 123 (130)
+..-+-.|++++|++|..+...+.+++...++|.+-.+|...+++++. ++.++|++++ +|+.+ +.|. +.++|.
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~~ 191 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEF--GQGRMTLEEIL 191 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEE--EecCCCHHHHH
Confidence 344589999999999999999999999998899999999999999988 9999999876 66543 5688 888888
Q ss_pred HHHhh
Q 032967 124 DRLWL 128 (130)
Q Consensus 124 ~~l~~ 128 (130)
+.+.+
T Consensus 192 ~~~~~ 196 (517)
T PRK15317 192 AKLDT 196 (517)
T ss_pred HHHhc
Confidence 88764
No 152
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.52 E-value=2.2e-06 Score=49.60 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=52.6
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc-----CCccccEEEEEeCCeEEEEeeCCCHHHHHHH
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ-----HIRYTPTFHFYRDGERVDEMFGAGEERLHDR 125 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~-----~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~ 125 (130)
+..|..+||+.|+.+...|.+ .++.|-.+|++..++... +...+|++++ ++. ...|+..++|.++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf~~~~l~~~ 72 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGFRPDMINRL 72 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecCCHHHHHHH
Confidence 667999999999999888854 278888999998776432 6679999875 443 3558899999887
Q ss_pred Hhh
Q 032967 126 LWL 128 (130)
Q Consensus 126 l~~ 128 (130)
+..
T Consensus 73 ~~~ 75 (81)
T PRK10329 73 HPA 75 (81)
T ss_pred HHh
Confidence 754
No 153
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=98.49 E-value=1e-06 Score=58.51 Aligned_cols=106 Identities=18% Similarity=0.252 Sum_probs=81.1
Q ss_pred CCCCCceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhcCCcccc
Q 032967 21 NNHHGHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQHIRYTP 100 (130)
Q Consensus 21 ~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~~v~~~P 100 (130)
...-+.|..|+ ..+|.+.+..+ +.+--|||+.|...-+-|+-+...++.++.+||.++|+++-.+.+-... .-...|
T Consensus 87 k~kfG~V~~IS-g~dyv~EVT~A-s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cIpNY-Pe~nlP 163 (240)
T KOG3170|consen 87 KAKFGEVFPIS-GPDYVKEVTKA-SEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCIPNY-PESNLP 163 (240)
T ss_pred Hhcccceeecc-chHHHHHHHhc-cCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccccCCC-cccCCC
Confidence 34678899995 56666666633 4556688999999999999999999999999999999998776544322 335789
Q ss_pred EEEEEeCCeEEEEee------CC--CHHHHHHHHhhc
Q 032967 101 TFHFYRDGERVDEMF------GA--GEERLHDRLWLH 129 (130)
Q Consensus 101 t~~~~~~g~~~~~~~------g~--~~~~l~~~l~~~ 129 (130)
|+++|..|.....+. |. +.+++..++-+.
T Consensus 164 Tl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 164 TLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred eEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 999999997655444 34 677888777653
No 154
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.48 E-value=5.8e-06 Score=54.39 Aligned_cols=100 Identities=17% Similarity=0.258 Sum_probs=77.2
Q ss_pred CCceeeccChHHHHHHHHHhhcCCCc-EEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCChhhhc--CCc--
Q 032967 24 HGHLKTASSDQNHKDILLQIKSSKIP-AVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIR-- 97 (130)
Q Consensus 24 ~~~~~~i~~~~~~~~~i~~~~~~~~~-~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~~~~~~--~v~-- 97 (130)
.+.+..+ +.+++..+.. ++.+ +++.|..........+...+..++++++ .+.|+.+|++..+.+.. ++.
T Consensus 76 ~P~v~~~-t~~n~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~ 150 (184)
T PF13848_consen 76 FPLVPEL-TPENFEKLFS----SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDED 150 (184)
T ss_dssp STSCEEE-STTHHHHHHS----TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTS
T ss_pred ccccccc-chhhHHHHhc----CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCc
Confidence 4445555 5678888873 6655 7888887788888999999999999998 59999999998887776 776
Q ss_pred cccEEEEEe--CCeEEEEeeCC-CHHHHHHHHhh
Q 032967 98 YTPTFHFYR--DGERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 98 ~~Pt~~~~~--~g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
.+|+++++. .++......|. +.+.|.+||+.
T Consensus 151 ~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 151 DLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp SSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred cCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 899999997 44332333677 99999999873
No 155
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.47 E-value=1.1e-06 Score=55.36 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=37.2
Q ss_pred CCCcEEEEEe-CCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCC
Q 032967 46 SKIPAVINYG-ASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDE 88 (130)
Q Consensus 46 ~~~~~lv~f~-s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~ 88 (130)
.+++++|.|| +.||+.|....+.+.++.+++. ++.++.|..+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~ 66 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS 66 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 6789999999 7899999999999999988874 68888887764
No 156
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.45 E-value=1.3e-06 Score=55.26 Aligned_cols=43 Identities=14% Similarity=0.464 Sum_probs=37.7
Q ss_pred CCCcEEEEEeCCCCHh-HHhhHHHHHHHHhhCC-----CeEEEEEECCC
Q 032967 46 SKIPAVINYGASWCGV-CNQILPAFCKLSNNFP-----KLSFIYADIDE 88 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~-C~~~~~~~~~l~~~~~-----~v~~~~id~~~ 88 (130)
.++++||.||++||++ |....+.+.++.++++ ++.++.|..+.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 6789999999999998 9999999999988886 28888888764
No 157
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.44 E-value=3.3e-06 Score=53.91 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=34.9
Q ss_pred CcEEEEEe-CCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCC
Q 032967 48 IPAVINYG-ASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDE 88 (130)
Q Consensus 48 ~~~lv~f~-s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~ 88 (130)
++++|.|| ++||+.|....|.+.++.++++ ++.++.|+.+.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 72 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDS 72 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 78888887 9999999999999999988886 68888877654
No 158
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.40 E-value=4.5e-07 Score=57.72 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=37.4
Q ss_pred CCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCChhhh
Q 032967 47 KIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDECPETT 93 (130)
Q Consensus 47 ~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~~~~ 93 (130)
+..+|++|+++||+.|+...|.+.++.+++. ++.++.|..+......
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~ 72 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLE 72 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHH
Confidence 3445555569999999999999999998884 6999999988665543
No 159
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=98.38 E-value=1.3e-06 Score=58.63 Aligned_cols=74 Identities=18% Similarity=0.173 Sum_probs=51.0
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEEC--CC-----------------------------------
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADI--DE----------------------------------- 88 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~--~~----------------------------------- 88 (130)
+++..++.|..+.|++|+++.+.+.+ ...++.+..+.. ..
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~ 152 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAA 152 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcc
Confidence 45789999999999999999998876 122343333221 11
Q ss_pred --------Chhhhc--CCccccEEEEEeCCeEEEEeeCC-CHHHHHHHH
Q 032967 89 --------CPETTQ--HIRYTPTFHFYRDGERVDEMFGA-GEERLHDRL 126 (130)
Q Consensus 89 --------~~~~~~--~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l 126 (130)
+..++. +|.++|+++ +.+|.. +.|. +.++|.++|
T Consensus 153 ~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 153 SCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred ccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 011122 789999997 788865 4688 888888765
No 160
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.38 E-value=3.5e-06 Score=48.43 Aligned_cols=59 Identities=12% Similarity=0.209 Sum_probs=43.0
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhh---hc--CCccccEEEEEeCCeEE
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPET---TQ--HIRYTPTFHFYRDGERV 111 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~---~~--~v~~~Pt~~~~~~g~~~ 111 (130)
+++.-|+.|+.+||+.|++....|.+. ++.+-.+|+++.... .. +..++|++++ +|+.+
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 68 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI 68 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE
Confidence 445567789999999999999888643 566777888766332 22 6789999864 77543
No 161
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.34 E-value=4.2e-06 Score=47.16 Aligned_cols=66 Identities=24% Similarity=0.375 Sum_probs=48.6
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc-----CCccccEEEEEeCCeEEEEeeCCCHHHHHHH
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ-----HIRYTPTFHFYRDGERVDEMFGAGEERLHDR 125 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~-----~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~ 125 (130)
+..|..++|+.|+.....|.+. ++.+-.+|+++++.... +..++|++++ +|+. ...|.+++.|.+.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~--~~~G~~~~~~~~~ 71 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL--SWSGFRPDKLKAL 71 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc--EEeccCHHHHHhc
Confidence 3578899999999999888653 67888899998776543 6678999765 4532 3456688887653
No 162
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.32 E-value=1.1e-05 Score=61.59 Aligned_cols=79 Identities=18% Similarity=0.231 Sum_probs=67.0
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc--CCccccEEEEEeCCeEEEEeeCC-CHHHH
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRDGERVDEMFGA-GEERL 122 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l 122 (130)
.+..-+-.|+++.|++|......+.+++...++|..-.+|...++++.. ++.++|++++ +|+.+ +.|. +.+++
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~ 191 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF--HNGRMDLAEL 191 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE--EecCCCHHHH
Confidence 3445689999999999999999999999999999999999999999988 9999999876 66543 5688 88888
Q ss_pred HHHHhh
Q 032967 123 HDRLWL 128 (130)
Q Consensus 123 ~~~l~~ 128 (130)
.+.+..
T Consensus 192 ~~~l~~ 197 (515)
T TIGR03140 192 LEKLEE 197 (515)
T ss_pred HHHHhh
Confidence 777653
No 163
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.30 E-value=2.1e-06 Score=47.60 Aligned_cols=55 Identities=24% Similarity=0.321 Sum_probs=41.1
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc------CCccccEEEEEeCCeEEE
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ------HIRYTPTFHFYRDGERVD 112 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~------~v~~~Pt~~~~~~g~~~~ 112 (130)
++.|+++||+.|+.+...+.+.. +.+..+|++.++.... +...+|+++ .+|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQIF--INGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEEe
Confidence 56899999999999998887763 6777889988775432 556778764 4776554
No 164
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=98.25 E-value=6.8e-06 Score=57.30 Aligned_cols=82 Identities=11% Similarity=0.139 Sum_probs=57.0
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECC----------------CC--------------------
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADID----------------EC-------------------- 89 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~----------------~~-------------------- 89 (130)
+.+.+|+.|..+.|++|+++.+.+.++.+.- +|.+..+... ++
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g-~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~ 194 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDSG-KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP 194 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhcC-ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence 3467899999999999999999988776542 3444333210 00
Q ss_pred ----hh----------hhc--CCccccEEEEEeCCeEEEEeeCC-CHHHHHHHHhh
Q 032967 90 ----PE----------TTQ--HIRYTPTFHFYRDGERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 90 ----~~----------~~~--~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
.+ +.. +++++|++++-.....+....|. +.++|.+.|..
T Consensus 195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~~ 250 (251)
T PRK11657 195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMGP 250 (251)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhCC
Confidence 00 111 78999999987643456678899 89999998764
No 165
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.25 E-value=2.5e-05 Score=52.18 Aligned_cols=83 Identities=11% Similarity=-0.013 Sum_probs=58.7
Q ss_pred CCCcEEEEEe-CCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCChh-------------------------hhc--C
Q 032967 46 SKIPAVINYG-ASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDECPE-------------------------TTQ--H 95 (130)
Q Consensus 46 ~~~~~lv~f~-s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~~-------------------------~~~--~ 95 (130)
.++++|++|| ++||+.|....+.+.++.++|. ++.++.|+.+.... ++. +
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 5678999999 9999999999999999998885 67888787764211 111 3
Q ss_pred C----ccc--cEEEEE-eCCeEEEEeeC-----CCHHHHHHHHhh
Q 032967 96 I----RYT--PTFHFY-RDGERVDEMFG-----AGEERLHDRLWL 128 (130)
Q Consensus 96 v----~~~--Pt~~~~-~~g~~~~~~~g-----~~~~~l~~~l~~ 128 (130)
+ .++ |+.+++ .+|++...+.. .+.+++.+.|+.
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~a 154 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 154 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence 3 245 865555 58876655432 267787777753
No 166
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.25 E-value=2.5e-06 Score=51.24 Aligned_cols=55 Identities=20% Similarity=0.345 Sum_probs=38.4
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhh-------hc--CCccccEEEEEeCCeEEE
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPET-------TQ--HIRYTPTFHFYRDGERVD 112 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~-------~~--~v~~~Pt~~~~~~g~~~~ 112 (130)
++.|..+||+.|+++...|.+. ++.+..+|++..+.. .. +..++|+++ -+|+.+.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf--i~g~~iG 73 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF--VGGKLVG 73 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE--ECCEEEc
Confidence 5669999999999999877665 455556777765431 21 567899974 4776553
No 167
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.24 E-value=7.4e-06 Score=47.02 Aligned_cols=56 Identities=21% Similarity=0.374 Sum_probs=40.3
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCCh-h----hhc--CCccccEEEEEeCCeEE
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECP-E----TTQ--HIRYTPTFHFYRDGERV 111 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~-~----~~~--~v~~~Pt~~~~~~g~~~ 111 (130)
++.|+++||+.|+.+.+.+.++.. .+.++.++.+.+. . +.. +..++|++ |-+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 578999999999999999988765 3566677776552 2 222 67788986 4467543
No 168
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.23 E-value=2.1e-05 Score=44.21 Aligned_cols=64 Identities=19% Similarity=0.282 Sum_probs=44.9
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhh---c--CCccccEEEEEeCCeEEEEeeCCCHHHHHHH
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETT---Q--HIRYTPTFHFYRDGERVDEMFGAGEERLHDR 125 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~---~--~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~ 125 (130)
++.|..+||+.|......+.+. ++.+-.+|++.++... . +..++|.++ -+|+.+ | ..++|.++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~i----g-g~~~l~~~ 70 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGELI----G-GSDDLEKY 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEEE----e-CHHHHHHH
Confidence 6789999999999998877753 5777778887665321 1 677899975 467543 2 35666665
Q ss_pred H
Q 032967 126 L 126 (130)
Q Consensus 126 l 126 (130)
|
T Consensus 71 l 71 (72)
T cd03029 71 F 71 (72)
T ss_pred h
Confidence 4
No 169
>PRK15000 peroxidase; Provisional
Probab=98.23 E-value=1.7e-05 Score=53.53 Aligned_cols=82 Identities=13% Similarity=0.099 Sum_probs=59.1
Q ss_pred CCCcEEEEEeCC-CCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCChh---------------------hh-------c
Q 032967 46 SKIPAVINYGAS-WCGVCNQILPAFCKLSNNFP--KLSFIYADIDECPE---------------------TT-------Q 94 (130)
Q Consensus 46 ~~~~~lv~f~s~-~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~~---------------------~~-------~ 94 (130)
+++.+|++||.. ||+.|....+.+.++.++|. ++.++.|.++.... ++ .
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 678999999995 99999999999999998886 68888888773211 01 1
Q ss_pred --CCc------cccEEEEE-eCCeEEEEeeCC-----CHHHHHHHHh
Q 032967 95 --HIR------YTPTFHFY-RDGERVDEMFGA-----GEERLHDRLW 127 (130)
Q Consensus 95 --~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~l~ 127 (130)
++. +.|+.+++ ++|++...+.|. +.+++.+.|+
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~ 159 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVD 159 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence 333 57865555 588877766653 5667766664
No 170
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.22 E-value=1.2e-05 Score=54.31 Aligned_cols=83 Identities=10% Similarity=0.058 Sum_probs=56.0
Q ss_pred CCCcEE-EEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCChh---------------------------hhc-
Q 032967 46 SKIPAV-INYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDECPE---------------------------TTQ- 94 (130)
Q Consensus 46 ~~~~~l-v~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~~---------------------------~~~- 94 (130)
.++.++ +.||++||+.|....+.+.++.++|+ ++.++.|+++.... ++.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 445554 46899999999999999999988886 67888777763211 111
Q ss_pred -CCc------cccEEEEE-eCCeEEEEe----e-CCCHHHHHHHHhh
Q 032967 95 -HIR------YTPTFHFY-RDGERVDEM----F-GAGEERLHDRLWL 128 (130)
Q Consensus 95 -~v~------~~Pt~~~~-~~g~~~~~~----~-g~~~~~l~~~l~~ 128 (130)
++. .+|+.+++ .+|++.... . |.+.+++...|+.
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~ 152 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKA 152 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 332 47876666 477665444 2 3388888777754
No 171
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.19 E-value=2.4e-05 Score=44.13 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=39.9
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc------CCc-cccEEEEEeCCeEE
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ------HIR-YTPTFHFYRDGERV 111 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~------~v~-~~Pt~~~~~~g~~~ 111 (130)
++.|+.+||+.|..+...|.+. ++.+-.+|++.+++... +.. ++|++++ +|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCEEE
Confidence 5679999999999999888763 67777888887755432 434 8998754 67544
No 172
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.18 E-value=3.3e-05 Score=46.17 Aligned_cols=59 Identities=24% Similarity=0.392 Sum_probs=40.7
Q ss_pred CCCcEEEEEeC----CCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc------CCccccEEEEEeCCeEE
Q 032967 46 SKIPAVINYGA----SWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ------HIRYTPTFHFYRDGERV 111 (130)
Q Consensus 46 ~~~~~lv~f~s----~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~------~v~~~Pt~~~~~~g~~~ 111 (130)
++.+++|+-.+ +||++|.++...|.+. ++.+..+|++.++.... +..++|++++ +|+.+
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~~i 78 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGEFV 78 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCEEE
Confidence 33455544332 8999999999888765 46677889887776543 5678898764 67544
No 173
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.17 E-value=8e-06 Score=46.73 Aligned_cols=54 Identities=19% Similarity=0.346 Sum_probs=40.2
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc------CCccccEEEEEeCCeEE
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ------HIRYTPTFHFYRDGERV 111 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~------~v~~~Pt~~~~~~g~~~ 111 (130)
|..|+.+||+.|..+...+.+. ++.+-.+|++.++.... +..++|++++ +|+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 4678999999999999888764 56677778887765432 5678999754 66544
No 174
>PHA03050 glutaredoxin; Provisional
Probab=98.15 E-value=1.6e-05 Score=48.43 Aligned_cols=58 Identities=24% Similarity=0.279 Sum_probs=39.3
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCC---Chh----hhc--CCccccEEEEEeCCeEEE
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDE---CPE----TTQ--HIRYTPTFHFYRDGERVD 112 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~---~~~----~~~--~v~~~Pt~~~~~~g~~~~ 112 (130)
|+.|..+|||+|+++...|.+..-.++. +-.+|+++ ..+ +.. +..++|++++ +|+.+.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~--~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~iG 81 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGA--YEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSIG 81 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCC--cEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEEe
Confidence 6679999999999999888777543333 44456654 222 222 6678999855 676554
No 175
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.14 E-value=2.7e-05 Score=52.58 Aligned_cols=40 Identities=28% Similarity=0.448 Sum_probs=34.4
Q ss_pred cEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCC
Q 032967 49 PAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDE 88 (130)
Q Consensus 49 ~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~ 88 (130)
.+|+.|+++||+.|....+.+.++.++|. ++.++.|+++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 45668999999999999999999998886 68888888774
No 176
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.13 E-value=8.2e-05 Score=47.90 Aligned_cols=41 Identities=20% Similarity=0.432 Sum_probs=34.2
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhC--C-CeEEEEEEC
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNF--P-KLSFIYADI 86 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~--~-~v~~~~id~ 86 (130)
..+++|+.|++..|++|+.+.+.+.++.+++ + ++.+...++
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 5578899999999999999999999998887 4 688877766
No 177
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.13 E-value=6.5e-05 Score=44.44 Aligned_cols=91 Identities=15% Similarity=0.123 Sum_probs=67.7
Q ss_pred eeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCChhhhc--CCccccEEEE
Q 032967 28 KTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIRYTPTFHF 104 (130)
Q Consensus 28 ~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~~~~~~--~v~~~Pt~~~ 104 (130)
..+.+.+++.+.+. .+.+++|-|+.+++. .....+.++|..++ ++.|+.+. +..+.. .+ ..|++++
T Consensus 2 ~~i~s~~~l~~~~~----~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~-~~~~i~l 70 (97)
T cd02981 2 KELTSKEELEKFLD----KDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKV-KPGSVVL 70 (97)
T ss_pred eecCCHHHHHHHhc----cCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCC-CCCceEE
Confidence 35667778888764 788999999999887 46678888998886 78887665 334443 44 4588999
Q ss_pred EeCC-eEEEEeeCC-CHHHHHHHHhhc
Q 032967 105 YRDG-ERVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 105 ~~~g-~~~~~~~g~-~~~~l~~~l~~~ 129 (130)
|+.. +....|.|. +.+.|.+||..+
T Consensus 71 ~~~~~~~~~~y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 71 FKPFEEEPVEYDGEFTEESLVEFIKDN 97 (97)
T ss_pred eCCcccCCccCCCCCCHHHHHHHHHhC
Confidence 9764 445568888 889999999753
No 178
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.12 E-value=2.5e-05 Score=44.06 Aligned_cols=54 Identities=22% Similarity=0.356 Sum_probs=40.7
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc------CCccccEEEEEeCCeEE
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ------HIRYTPTFHFYRDGERV 111 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~------~v~~~Pt~~~~~~g~~~ 111 (130)
++.|+.+||+.|+.+...|++. ++.+-.+|+++.+.... +-..+|++++ +|+.+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~i 62 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLV 62 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 5679999999999999887763 67778889988775332 5568899855 66544
No 179
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.12 E-value=0.00014 Score=45.79 Aligned_cols=101 Identities=14% Similarity=0.213 Sum_probs=73.4
Q ss_pred CceeeccChHHHHHHHHHhhcCCCcEEEEEeCC--CC-HhH-HhhHHHHHHHHhhCC-C-eEEEEEECCCChhhhc--CC
Q 032967 25 GHLKTASSDQNHKDILLQIKSSKIPAVINYGAS--WC-GVC-NQILPAFCKLSNNFP-K-LSFIYADIDECPETTQ--HI 96 (130)
Q Consensus 25 ~~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~--~C-~~C-~~~~~~~~~l~~~~~-~-v~~~~id~~~~~~~~~--~v 96 (130)
..++++++.+.++..-. +++.-+|.|.-+ .| ..+ ......+.+++++|+ + +.|+.+|.+..+.+.. ++
T Consensus 2 ~~~~~l~~~~~~~~~C~----~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl 77 (130)
T cd02983 2 PEIIELTSEDVFEETCE----EKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNI 77 (130)
T ss_pred CceEEecCHHHHHhhcc----CCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCC
Confidence 35678877777777774 345666666543 12 334 366889999999998 6 9999999999887666 77
Q ss_pred c--cccEEEEEeCCeEEEE-eeCC-CHHHHHHHHhhc
Q 032967 97 R--YTPTFHFYRDGERVDE-MFGA-GEERLHDRLWLH 129 (130)
Q Consensus 97 ~--~~Pt~~~~~~g~~~~~-~~g~-~~~~l~~~l~~~ 129 (130)
. ++|+++++...+.... +.|. +.+.|.+|++.+
T Consensus 78 ~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~ 114 (130)
T cd02983 78 GGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLREL 114 (130)
T ss_pred CccCCCEEEEEecccCccccccCccCHHHHHHHHHHH
Confidence 4 5999999876442333 5677 999999999764
No 180
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.06 E-value=0.00011 Score=52.99 Aligned_cols=95 Identities=15% Similarity=0.172 Sum_probs=66.4
Q ss_pred ceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhh------HHHHHHHHhh-C--CCeEEEEEECCCChhhhc--
Q 032967 26 HLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQI------LPAFCKLSNN-F--PKLSFIYADIDECPETTQ-- 94 (130)
Q Consensus 26 ~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~------~~~~~~l~~~-~--~~v~~~~id~~~~~~~~~-- 94 (130)
.++.+ +..+|.+.+. +-...+|+||.+-- .-+.. ...+-+|+++ + ++|.|+.||..+...+++
T Consensus 35 RVi~L-neKNfk~~lK----kyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKL 108 (383)
T PF01216_consen 35 RVIDL-NEKNFKRALK----KYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKL 108 (383)
T ss_dssp -CEEE--TTTHHHHHH----H-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHH
T ss_pred ceEEc-chhHHHHHHH----hhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhc
Confidence 55555 6899999986 66888888888863 22322 2333344433 3 379999999999999998
Q ss_pred CCccccEEEEEeCCeEEEEeeCC-CHHHHHHHHh
Q 032967 95 HIRYTPTFHFYRDGERVDEMFGA-GEERLHDRLW 127 (130)
Q Consensus 95 ~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~ 127 (130)
++...+++.+|++|+.+. |.|. +++.|.+||-
T Consensus 109 gv~E~~SiyVfkd~~~IE-ydG~~saDtLVeFl~ 141 (383)
T PF01216_consen 109 GVEEEGSIYVFKDGEVIE-YDGERSADTLVEFLL 141 (383)
T ss_dssp T--STTEEEEEETTEEEE-E-S--SHHHHHHHHH
T ss_pred CccccCcEEEEECCcEEE-ecCccCHHHHHHHHH
Confidence 999999999999998776 5598 9999999985
No 181
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.98 E-value=0.00014 Score=50.95 Aligned_cols=82 Identities=11% Similarity=0.098 Sum_probs=56.4
Q ss_pred CCCcEEEEEe-CCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCCh----------------------------hhhc
Q 032967 46 SKIPAVINYG-ASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDECP----------------------------ETTQ 94 (130)
Q Consensus 46 ~~~~~lv~f~-s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~----------------------------~~~~ 94 (130)
+++++|++|| ++||+.|....+.+.++.++|. ++.++.|.+|... .++.
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 5567777777 8999999999999999988885 6778877776421 1111
Q ss_pred --CCc-----cccEEEEE-eCCeEEEEee-----CCCHHHHHHHHh
Q 032967 95 --HIR-----YTPTFHFY-RDGERVDEMF-----GAGEERLHDRLW 127 (130)
Q Consensus 95 --~v~-----~~Pt~~~~-~~g~~~~~~~-----g~~~~~l~~~l~ 127 (130)
++. ..|+.+++ ++|++...+. |.+.+++.+.|+
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~ 222 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFD 222 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 332 46876666 5888766552 226777777664
No 182
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.98 E-value=4.2e-05 Score=44.13 Aligned_cols=76 Identities=22% Similarity=0.318 Sum_probs=56.0
Q ss_pred EEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc--CCccccEEEEEeCCe--EEEEeeCC-CHHHHHH
Q 032967 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRDGE--RVDEMFGA-GEERLHD 124 (130)
Q Consensus 50 ~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g~--~~~~~~g~-~~~~l~~ 124 (130)
.|++|..+.|.-|..+...+.++.... .+.+-.||++.++.+.. + ..+|.+.+-..+. ......+. +.++|.+
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~-~~~l~~vDI~~d~~l~~~Y~-~~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~ 78 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEF-PFELEEVDIDEDPELFEKYG-YRIPVLHIDGIRQFKEQEELKWRFDEEQLRA 78 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTS-TCEEEEEETTTTHHHHHHSC-TSTSEEEETT-GGGCTSEEEESSB-HHHHHH
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHhc-CCCCEEEEcCcccccccceeCCCCCHHHHHH
Confidence 378899999999999999999987666 58888999999998766 6 4799977643211 12334566 9999999
Q ss_pred HHh
Q 032967 125 RLW 127 (130)
Q Consensus 125 ~l~ 127 (130)
+|+
T Consensus 79 ~L~ 81 (81)
T PF05768_consen 79 WLE 81 (81)
T ss_dssp HHH
T ss_pred HhC
Confidence 985
No 183
>PRK10824 glutaredoxin-4; Provisional
Probab=97.96 E-value=6.5e-05 Score=46.27 Aligned_cols=59 Identities=25% Similarity=0.417 Sum_probs=39.1
Q ss_pred CCcEEEEEeC----CCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc------CCccccEEEEEeCCeEEE
Q 032967 47 KIPAVINYGA----SWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ------HIRYTPTFHFYRDGERVD 112 (130)
Q Consensus 47 ~~~~lv~f~s----~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~------~v~~~Pt~~~~~~g~~~~ 112 (130)
..+++|+--+ |||++|+++...|..+. +.+..+|++.++++.. +-.++|.+++ +|+.+.
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~-----i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~IG 82 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACG-----ERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGELVG 82 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcC-----CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEEEc
Confidence 3444444333 69999999998887763 4455567776665543 5667888765 776664
No 184
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.93 E-value=0.00029 Score=54.37 Aligned_cols=99 Identities=16% Similarity=0.142 Sum_probs=75.4
Q ss_pred eeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc--CCccccEEEE
Q 032967 27 LKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHF 104 (130)
Q Consensus 27 ~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~--~v~~~Pt~~~ 104 (130)
+..-....++.+.+. .-.+.+.|+.|+.+.|..|..+...+++++..-+++.+...|...+..... ++...|+|.+
T Consensus 348 ~l~~~~~~~l~~~~~--~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i 425 (555)
T TIGR03143 348 LLDDSLRQQLVGIFG--RLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVAL 425 (555)
T ss_pred ccCHHHHHHHHHHHH--hcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEE
Confidence 334444566777776 334455788898999999999999999999766678888888877777665 8889999999
Q ss_pred Ee-CCeEE-EEeeCC-CHHHHHHHHh
Q 032967 105 YR-DGERV-DEMFGA-GEERLHDRLW 127 (130)
Q Consensus 105 ~~-~g~~~-~~~~g~-~~~~l~~~l~ 127 (130)
+. +|+.. -+|.|. .-.++..+|.
T Consensus 426 ~~~~~~~~~i~f~g~P~G~Ef~s~i~ 451 (555)
T TIGR03143 426 LDDDGNYTGLKFHGVPSGHELNSFIL 451 (555)
T ss_pred EeCCCcccceEEEecCccHhHHHHHH
Confidence 95 65433 688999 7778877764
No 185
>PRK10638 glutaredoxin 3; Provisional
Probab=97.92 E-value=8.8e-05 Score=42.88 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=40.4
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc------CCccccEEEEEeCCeEEE
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ------HIRYTPTFHFYRDGERVD 112 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~------~v~~~Pt~~~~~~g~~~~ 112 (130)
++.|..+||+.|+.+...+.+. ++.+-.+|++.+++... +...+|++++ +|+.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 5678899999999999887764 56677788887764332 6678998754 675553
No 186
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.91 E-value=0.0001 Score=43.34 Aligned_cols=59 Identities=25% Similarity=0.356 Sum_probs=40.5
Q ss_pred CCCcEEEEEeC----CCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc------CCccccEEEEEeCCeEE
Q 032967 46 SKIPAVINYGA----SWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ------HIRYTPTFHFYRDGERV 111 (130)
Q Consensus 46 ~~~~~lv~f~s----~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~------~v~~~Pt~~~~~~g~~~ 111 (130)
++.+++|+-.+ +||+.|+.+...|.+. ++.+-.+|++.++++.. +-.++|++++ +|+.+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-----~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~~i 74 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL-----GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGELV 74 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-----CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCEEE
Confidence 34555555443 7999999999888765 46677778877766543 6678999744 67543
No 187
>PRK13189 peroxiredoxin; Provisional
Probab=97.87 E-value=0.00022 Score=48.85 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=35.1
Q ss_pred CCC-cEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCC
Q 032967 46 SKI-PAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDE 88 (130)
Q Consensus 46 ~~~-~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~ 88 (130)
.++ .+|+.|+++||+.|....+.+.++..+|. ++.++.|.++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~ 79 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQ 79 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 455 45568899999999999999999988885 68888887764
No 188
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00019 Score=41.35 Aligned_cols=64 Identities=20% Similarity=0.331 Sum_probs=44.3
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCCh--hhhc------CCccccEEEEEeCCeEEEEeeCC-CHHH
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECP--ETTQ------HIRYTPTFHFYRDGERVDEMFGA-GEER 121 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~--~~~~------~v~~~Pt~~~~~~g~~~~~~~g~-~~~~ 121 (130)
++.|.-++||+|......|.+. ++.+..++++..+ +... +..++|++++ +|+.+ -|. ..++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~i---gg~~d~~~ 72 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKHV---GGCDDLDA 72 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEEE---eCcccHHH
Confidence 6779999999999999877733 6777777887666 3321 5689999876 65433 233 5666
Q ss_pred HHH
Q 032967 122 LHD 124 (130)
Q Consensus 122 l~~ 124 (130)
+..
T Consensus 73 ~~~ 75 (80)
T COG0695 73 LEA 75 (80)
T ss_pred HHh
Confidence 544
No 189
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.86 E-value=0.00021 Score=43.77 Aligned_cols=92 Identities=10% Similarity=0.011 Sum_probs=66.7
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhh---CC-CeEEEEEECCCChhhhc--CCcc--ccEEE
Q 032967 32 SDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNN---FP-KLSFIYADIDECPETTQ--HIRY--TPTFH 103 (130)
Q Consensus 32 ~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~---~~-~v~~~~id~~~~~~~~~--~v~~--~Pt~~ 103 (130)
+.+++..+.. ++.+..+.|+++ ..-..+.+.+.+++++ ++ ++.|+.+|.+....... ++.. +|.+.
T Consensus 5 t~e~~~~~~~----~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~ 78 (111)
T cd03072 5 TFENAEELTE----EGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIA 78 (111)
T ss_pred ccccHHHHhc----CCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEE
Confidence 5666776663 777776667722 3346788899999999 87 69999999998765544 7776 89988
Q ss_pred EEeCCe-EEEE-eeCC-CHHHHHHHHhhc
Q 032967 104 FYRDGE-RVDE-MFGA-GEERLHDRLWLH 129 (130)
Q Consensus 104 ~~~~g~-~~~~-~~g~-~~~~l~~~l~~~ 129 (130)
+..... .... +.+. +.+.|.+|++.+
T Consensus 79 i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~ 107 (111)
T cd03072 79 IDSFRHMYLFPDFEDVYVPGKLKQFVLDL 107 (111)
T ss_pred EEcchhcCcCCCCccccCHHHHHHHHHHH
Confidence 886533 2222 4466 899999999864
No 190
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.83 E-value=7e-05 Score=47.64 Aligned_cols=41 Identities=17% Similarity=0.477 Sum_probs=33.8
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEEC
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADI 86 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~ 86 (130)
..++.|+.|+.++|++|+.+.|.+.++..+++++.+...+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~ 44 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEF 44 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence 56789999999999999999999999888887665554443
No 191
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.76 E-value=0.00028 Score=42.86 Aligned_cols=85 Identities=15% Similarity=0.186 Sum_probs=62.1
Q ss_pred eeccChHHHHHHHHHhhcCCCcEEEEEeCCC--CHhHHhhHHHHHHHHhhCCC-eEEEEEECCCChhhhc--CCccccEE
Q 032967 28 KTASSDQNHKDILLQIKSSKIPAVINYGASW--CGVCNQILPAFCKLSNNFPK-LSFIYADIDECPETTQ--HIRYTPTF 102 (130)
Q Consensus 28 ~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~--C~~C~~~~~~~~~l~~~~~~-v~~~~id~~~~~~~~~--~v~~~Pt~ 102 (130)
..+ +.+++++.+. .....+++|.++. ++.+....-++.++.+.|++ +....+.-.....+.. ++..+|++
T Consensus 12 ~~v-d~~~ld~~l~----~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaL 86 (107)
T PF07449_consen 12 PRV-DADTLDAFLA----APGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPAL 86 (107)
T ss_dssp EEE--CCCHHHHHH----CCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEE
T ss_pred eee-chhhHHHHHh----CCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeE
Confidence 344 4677888885 5566666666543 56666777788999999984 6666666555566665 99999999
Q ss_pred EEEeCCeEEEEeeCC
Q 032967 103 HFYRDGERVDEMFGA 117 (130)
Q Consensus 103 ~~~~~g~~~~~~~g~ 117 (130)
+++++|+.+..+.|.
T Consensus 87 vf~R~g~~lG~i~gi 101 (107)
T PF07449_consen 87 VFFRDGRYLGAIEGI 101 (107)
T ss_dssp EEEETTEEEEEEESS
T ss_pred EEEECCEEEEEecCe
Confidence 999999999999887
No 192
>PTZ00062 glutaredoxin; Provisional
Probab=97.65 E-value=0.00074 Score=45.72 Aligned_cols=60 Identities=13% Similarity=0.210 Sum_probs=40.9
Q ss_pred cCCCcEEEEE---eCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc------CCccccEEEEEeCCeEE
Q 032967 45 SSKIPAVINY---GASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ------HIRYTPTFHFYRDGERV 111 (130)
Q Consensus 45 ~~~~~~lv~f---~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~------~v~~~Pt~~~~~~g~~~ 111 (130)
++++++|..= +.|+|+.|+++...|.+. ++.+..+|++..++... +-.++|++.+ +|+.+
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~~I 179 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGELI 179 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 4545554444 337999999998777754 57777889987776543 4567787665 67655
No 193
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.49 E-value=0.00064 Score=39.49 Aligned_cols=36 Identities=17% Similarity=0.352 Sum_probs=28.2
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEEC
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADI 86 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~ 86 (130)
|..|+++.|++|..+.+.+.++....+ ++.+....+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~ 37 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPF 37 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEecc
Confidence 468999999999999999999975554 566655544
No 194
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.49 E-value=0.00019 Score=48.98 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=36.2
Q ss_pred CCCcEE-EEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCC
Q 032967 46 SKIPAV-INYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDEC 89 (130)
Q Consensus 46 ~~~~~l-v~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~ 89 (130)
.++.++ +.|+++||+.|....+.+.++..+|. ++.++.+++|..
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~ 78 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSN 78 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 455544 58999999999999999999999985 788888888743
No 195
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.47 E-value=0.00031 Score=52.35 Aligned_cols=54 Identities=20% Similarity=0.372 Sum_probs=40.5
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc--------------CCccccEEEEEeCCeEE
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--------------HIRYTPTFHFYRDGERV 111 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~--------------~v~~~Pt~~~~~~g~~~ 111 (130)
|+.|..+||++|+.+...+.+. ++.+-.+|+++.+.... +..++|++++ +|+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~i 71 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHI 71 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEE
Confidence 7789999999999998777764 68888899987663211 3568899876 66544
No 196
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.41 E-value=0.00026 Score=48.34 Aligned_cols=83 Identities=14% Similarity=0.210 Sum_probs=57.7
Q ss_pred CCCc-EEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCChh---------------------------hhc-
Q 032967 46 SKIP-AVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDECPE---------------------------TTQ- 94 (130)
Q Consensus 46 ~~~~-~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~~---------------------------~~~- 94 (130)
.++. +|+.|+++||+.|....+.+.++..+|. ++.++.|+++.... ++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 3455 5789999999999999999999999885 68888888775311 111
Q ss_pred -CC-------ccccEEEEE-eCCeEEEEee-----CCCHHHHHHHHhh
Q 032967 95 -HI-------RYTPTFHFY-RDGERVDEMF-----GAGEERLHDRLWL 128 (130)
Q Consensus 95 -~v-------~~~Pt~~~~-~~g~~~~~~~-----g~~~~~l~~~l~~ 128 (130)
++ ...|+.+++ .+|++...+. |.+.+++.+.|+.
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 33 246876666 5787665543 2367777777653
No 197
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.33 E-value=0.00046 Score=46.45 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=36.4
Q ss_pred CCCcEEEEEeC-CCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCC
Q 032967 46 SKIPAVINYGA-SWCGVCNQILPAFCKLSNNFP--KLSFIYADIDEC 89 (130)
Q Consensus 46 ~~~~~lv~f~s-~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~ 89 (130)
.++.++|+||. +||+.|....+.+.++.++|. ++.++.|+++..
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~ 81 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSE 81 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence 56788999995 789999988889999988887 788888887743
No 198
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.31 E-value=0.0035 Score=38.35 Aligned_cols=72 Identities=18% Similarity=0.120 Sum_probs=51.6
Q ss_pred CCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCChhhhc--CCc--c--ccEEEEEeCCeEEEEee-CC-CHHHHHHHHh
Q 032967 58 WCGVCNQILPAFCKLSNNFP--KLSFIYADIDECPETTQ--HIR--Y--TPTFHFYRDGERVDEMF-GA-GEERLHDRLW 127 (130)
Q Consensus 58 ~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~~~~~--~v~--~--~Pt~~~~~~g~~~~~~~-g~-~~~~l~~~l~ 127 (130)
.-..-..+...+.++|+.|+ ++.|+.+|.+....... ++. . +|.+.+.........+. .. +.+.|.+|++
T Consensus 29 ~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~ 108 (111)
T cd03073 29 NPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLE 108 (111)
T ss_pred ChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHH
Confidence 33555678899999999998 69999999997765444 776 3 99999886432111122 23 6789999987
Q ss_pred hc
Q 032967 128 LH 129 (130)
Q Consensus 128 ~~ 129 (130)
.+
T Consensus 109 ~f 110 (111)
T cd03073 109 DF 110 (111)
T ss_pred Hh
Confidence 64
No 199
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0021 Score=38.90 Aligned_cols=55 Identities=20% Similarity=0.325 Sum_probs=38.1
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCCh-hhhc------CCccccEEEEEeCCeEE
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECP-ETTQ------HIRYTPTFHFYRDGERV 111 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~~-~~~~------~v~~~Pt~~~~~~g~~~ 111 (130)
+|.|.-+||+.|..+...|.. +. ...++.+|-..+. ++.. +-+++|.+++ +|+.+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~i 78 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFI 78 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEE
Confidence 445899999999998877777 33 5667777766444 3322 4558898776 77655
No 200
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0023 Score=45.58 Aligned_cols=104 Identities=18% Similarity=0.329 Sum_probs=74.7
Q ss_pred CCCceeeccChHHHHHHHHHhhcCCCcEEEEEeCC----CCHhHHhhHHHHHHHHhhCC---------CeEEEEEECCCC
Q 032967 23 HHGHLKTASSDQNHKDILLQIKSSKIPAVINYGAS----WCGVCNQILPAFCKLSNNFP---------KLSFIYADIDEC 89 (130)
Q Consensus 23 ~~~~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~----~C~~C~~~~~~~~~l~~~~~---------~v~~~~id~~~~ 89 (130)
....+.+. +.+.|...+.. ...+--++++|.|. .|.-|+.+...+.-+++.+. ++=|+.||.++.
T Consensus 38 s~~~VI~~-n~d~~~~~v~~-~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~ 115 (331)
T KOG2603|consen 38 SESGVIRM-NDDKFSKFVRP-PPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES 115 (331)
T ss_pred CCCCeEEe-cCcchhhhccC-CCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc
Confidence 34566666 56889988862 23334477778774 69999999999999987753 377899999999
Q ss_pred hhhhc--CCccccEEEEEeCCe--EE--E----EeeCCCHHHHHHHHhh
Q 032967 90 PETTQ--HIRYTPTFHFYRDGE--RV--D----EMFGAGEERLHDRLWL 128 (130)
Q Consensus 90 ~~~~~--~v~~~Pt~~~~~~g~--~~--~----~~~g~~~~~l~~~l~~ 128 (130)
+++-+ +++++|++++|...+ .. . .-.|...|.+.+|+.+
T Consensus 116 p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~ 164 (331)
T KOG2603|consen 116 PQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVAD 164 (331)
T ss_pred HHHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHH
Confidence 98877 999999999995322 11 1 1123357788888765
No 201
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.21 E-value=0.0041 Score=42.87 Aligned_cols=105 Identities=24% Similarity=0.302 Sum_probs=69.7
Q ss_pred CCceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCC-eEEEEEECCCC-------------
Q 032967 24 HGHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPK-LSFIYADIDEC------------- 89 (130)
Q Consensus 24 ~~~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~-v~~~~id~~~~------------- 89 (130)
+.+++++.. .....+++ ....++|.|+.|.|-.||+-+.-...+++++++|.+ +.|+.|=+.+.
T Consensus 81 ns~vv~l~g-~~~~~ild-f~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~~~ 158 (237)
T PF00837_consen 81 NSPVVTLDG-QRSCRILD-FAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNNPY 158 (237)
T ss_pred CCceEeeCC-CcceeHHH-hccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCCce
Confidence 556666643 33233332 125899999999999999999999999999999985 44554433211
Q ss_pred -----hhhhc----------------------------CCcccc-EEEEEeCCeEEE-EeeCC---CHHHHHHHHhhcC
Q 032967 90 -----PETTQ----------------------------HIRYTP-TFHFYRDGERVD-EMFGA---GEERLHDRLWLHS 130 (130)
Q Consensus 90 -----~~~~~----------------------------~v~~~P-t~~~~~~g~~~~-~~~g~---~~~~l~~~l~~~~ 130 (130)
..+.. ....+| .+.++++|+.+. .-.|. +.+++++||+++.
T Consensus 159 ~i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~YgA~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~L~~~~ 237 (237)
T PF00837_consen 159 EIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYGALPERLYIIQDGKVVYKGGPGPFGYSPEELREWLEKYK 237 (237)
T ss_pred eecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhCCCcceEEEEECCEEEEeCCCCCCcCCHHHHHHHHHhcC
Confidence 11100 113568 577888998664 22333 7999999999874
No 202
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.08 E-value=0.023 Score=34.01 Aligned_cols=93 Identities=17% Similarity=0.141 Sum_probs=60.5
Q ss_pred eeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCChhhhc--CCccccEEE
Q 032967 27 LKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIRYTPTFH 103 (130)
Q Consensus 27 ~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~~~~~~--~v~~~Pt~~ 103 (130)
+..+.+.+++++++ ..++..++|-|+..--. .....+.+++..++ +..|+... ...+.. ++ ..|+++
T Consensus 2 v~~i~~~~~~e~~~---~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~-~~~~i~ 71 (102)
T cd03066 2 VEIINSERELQAFE---NIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGL-KMNEVD 71 (102)
T ss_pred ceEcCCHHHHHHHh---cccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCC-CCCcEE
Confidence 45677888898888 21455555555554333 34567888888885 78885433 223333 44 578888
Q ss_pred EEeC-CeEEEEe-eCC-CHHHHHHHHhhc
Q 032967 104 FYRD-GERVDEM-FGA-GEERLHDRLWLH 129 (130)
Q Consensus 104 ~~~~-g~~~~~~-~g~-~~~~l~~~l~~~ 129 (130)
++++ .+....| .|. +.+.|.+||..+
T Consensus 72 l~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 72 FYEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred EeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 8875 4444456 666 899999999865
No 203
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.99 E-value=0.002 Score=42.08 Aligned_cols=40 Identities=23% Similarity=0.383 Sum_probs=33.6
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEE
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYAD 85 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id 85 (130)
.+++.|+.|+...|++|+.+.+.+.++.++++ ++.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcC
Confidence 56889999999999999999999999988887 55554433
No 204
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.006 Score=47.76 Aligned_cols=72 Identities=19% Similarity=0.297 Sum_probs=52.6
Q ss_pred HHhhcCCCcEEEEEeCCCCHhHHhhHH-HH--HHHHhhCC-CeEEEEEECCCChhhhc----------CCcccc-EEEEE
Q 032967 41 LQIKSSKIPAVINYGASWCGVCNQILP-AF--CKLSNNFP-KLSFIYADIDECPETTQ----------HIRYTP-TFHFY 105 (130)
Q Consensus 41 ~~~~~~~~~~lv~f~s~~C~~C~~~~~-~~--~~l~~~~~-~v~~~~id~~~~~~~~~----------~v~~~P-t~~~~ 105 (130)
..+...++|+++-...+||.=|+.|.. .| .++++.+. +..-++||-++-|++-. +-.|+| |+++.
T Consensus 37 ~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLtVfLT 116 (667)
T COG1331 37 AKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPLTVFLT 116 (667)
T ss_pred HHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCceeEEEC
Confidence 333569999999999999999998864 22 34444443 57778889988887632 456899 66666
Q ss_pred eCCeEEE
Q 032967 106 RDGERVD 112 (130)
Q Consensus 106 ~~g~~~~ 112 (130)
.+|+.+.
T Consensus 117 Pd~kPFf 123 (667)
T COG1331 117 PDGKPFF 123 (667)
T ss_pred CCCceee
Confidence 7887764
No 205
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.67 E-value=0.053 Score=32.56 Aligned_cols=90 Identities=9% Similarity=0.149 Sum_probs=59.4
Q ss_pred eeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCChhhhc--CCccccEEEE
Q 032967 28 KTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIRYTPTFHF 104 (130)
Q Consensus 28 ~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~~~~~~--~v~~~Pt~~~ 104 (130)
..+.+.+++++.+. .+++++|-|+..--. .....+.+++..++ +..|+...- ..+.. ++ .|++++
T Consensus 3 ~~i~s~~~l~~f~~----~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~---~~~~~~~~~--~~~ivl 70 (104)
T cd03069 3 VELRTEAEFEKFLS----DDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSD---KQLLEKYGY--GEGVVL 70 (104)
T ss_pred cccCCHHHHHHHhc----cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEECh---HHHHHhcCC--CCceEE
Confidence 45667888888884 566666666655333 35667788888885 788864432 23333 55 677888
Q ss_pred EeC-------CeEEEEeeCC-CHHHHHHHHhhc
Q 032967 105 YRD-------GERVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 105 ~~~-------g~~~~~~~g~-~~~~l~~~l~~~ 129 (130)
|+. ......|.|. +.+.|.+||..+
T Consensus 71 ~~p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 71 FRPPRLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred EechhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 832 1223357887 899999999865
No 206
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.53 E-value=0.055 Score=32.50 Aligned_cols=95 Identities=14% Similarity=0.216 Sum_probs=66.0
Q ss_pred eccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCC--Chhhhc--CCc----cc
Q 032967 29 TASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDE--CPETTQ--HIR----YT 99 (130)
Q Consensus 29 ~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~--~~~~~~--~v~----~~ 99 (130)
.|.+..+|..++. ...-+++.|..+--.. ......+.++++..+ .-++..|||.. ...+|. .+. --
T Consensus 5 ~i~d~KdfKKLLR----Tr~NVLvLy~ks~k~a-~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~ 79 (112)
T cd03067 5 DISDHKDFKKLLR----TRNNVLVLYSKSAKSA-EALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPK 79 (112)
T ss_pred cccchHHHHHHHh----hcCcEEEEEecchhhH-HHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCC
Confidence 5778889999995 4455666666554333 333457788887776 57778899985 566777 333 33
Q ss_pred c-EEEEEeCCeEEEEeeCC-CHHHHHHHHhh
Q 032967 100 P-TFHFYRDGERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 100 P-t~~~~~~g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
| .+..|++|.--..|... +...+..|++.
T Consensus 80 ~~~LkHYKdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 80 PVELKHYKDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred cchhhcccCCCccccccchhhHHHHHHHhhC
Confidence 4 48888999877777777 88888888763
No 207
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=96.47 E-value=0.015 Score=37.43 Aligned_cols=54 Identities=19% Similarity=0.253 Sum_probs=38.6
Q ss_pred EEEEeCC------CCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc------CC----ccccEEEEEeCCeEE
Q 032967 51 VINYGAS------WCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ------HI----RYTPTFHFYRDGERV 111 (130)
Q Consensus 51 lv~f~s~------~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~------~v----~~~Pt~~~~~~g~~~ 111 (130)
|+.|.++ +|+.|..+...|+.+ +|.+-.+|++.+++... +- .++|.+++ +|+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~I 71 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRYL 71 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEEE
Confidence 4566777 899999999777765 57888899987765433 22 57888765 56544
No 208
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=96.46 E-value=0.0058 Score=41.36 Aligned_cols=40 Identities=15% Similarity=0.378 Sum_probs=33.1
Q ss_pred CCcEEEEEeCCCCHhHHhhHHHH---HHHHhhCC-CeEEEEEEC
Q 032967 47 KIPAVINYGASWCGVCNQILPAF---CKLSNNFP-KLSFIYADI 86 (130)
Q Consensus 47 ~~~~lv~f~s~~C~~C~~~~~~~---~~l~~~~~-~v~~~~id~ 86 (130)
+++.|+.|++-.|++|..+.+.+ ..+.+.++ ++.+..+.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 46789999999999999999876 78888887 667666554
No 209
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=96.44 E-value=0.082 Score=31.36 Aligned_cols=83 Identities=16% Similarity=0.141 Sum_probs=57.4
Q ss_pred hHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhcCCccccEEEEEeCCeE-E
Q 032967 33 DQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQHIRYTPTFHFYRDGER-V 111 (130)
Q Consensus 33 ~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~~v~~~Pt~~~~~~g~~-~ 111 (130)
..++...++ .-.+.+.++.|..+. ..|..+...+++++..-+++.+-..+... ..|++.+..+|+. -
T Consensus 7 ~~qL~~~f~--~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~---------~~P~~~i~~~~~~~g 74 (94)
T cd02974 7 KQQLKAYLE--RLENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDE---------RKPSFSINRPGEDTG 74 (94)
T ss_pred HHHHHHHHH--hCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCC---------CCCEEEEecCCCccc
Confidence 355666665 234445555666655 99999999999998877667665443321 4799999887743 2
Q ss_pred EEeeCC-CHHHHHHHHh
Q 032967 112 DEMFGA-GEERLHDRLW 127 (130)
Q Consensus 112 ~~~~g~-~~~~l~~~l~ 127 (130)
-+|.|. .-.++..+|.
T Consensus 75 IrF~GiP~GhEf~Slil 91 (94)
T cd02974 75 IRFAGIPMGHEFTSLVL 91 (94)
T ss_pred EEEEecCCchhHHHHHH
Confidence 688999 7888887764
No 210
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=96.43 E-value=0.044 Score=36.17 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=29.0
Q ss_pred EEEEEeCCCCHhHHhhHHHHHHHHhhCCC--eEEEEEE
Q 032967 50 AVINYGASWCGVCNQILPAFCKLSNNFPK--LSFIYAD 85 (130)
Q Consensus 50 ~lv~f~s~~C~~C~~~~~~~~~l~~~~~~--v~~~~id 85 (130)
.|.+|+..-||.|-...+.+.++.+.+++ +.+.-+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 47889999999999999999999988854 4444443
No 211
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.26 E-value=0.039 Score=36.01 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=48.6
Q ss_pred hhHHHHHHHHhhCC-CeEEEEEECCCChhhhc--CCccccEEEEEeCC-eEEEEeeCC--CHHHHHHHHhhc
Q 032967 64 QILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIRYTPTFHFYRDG-ERVDEMFGA--GEERLHDRLWLH 129 (130)
Q Consensus 64 ~~~~~~~~l~~~~~-~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g-~~~~~~~g~--~~~~l~~~l~~~ 129 (130)
.....+.++++.+. ++.|+.+. +++++. ++.. |++++|+++ +....+.|. +.++|.+||..+
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~ 74 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKN 74 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHh
Confidence 34567888999987 79998887 555665 7777 999999884 456778884 999999999875
No 212
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=95.82 E-value=0.23 Score=30.92 Aligned_cols=92 Identities=14% Similarity=0.159 Sum_probs=62.1
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHH-hhC---CCeEEEEEECC-----CChhhhc--CC--cc
Q 032967 32 SDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLS-NNF---PKLSFIYADID-----ECPETTQ--HI--RY 98 (130)
Q Consensus 32 ~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~-~~~---~~v~~~~id~~-----~~~~~~~--~v--~~ 98 (130)
+.-+|++.+. +-+.+||.|=... +--.-+..+.+++ +.. +++-+..|-+. +|.+++. ++ ..
T Consensus 10 D~~tFdKvi~----kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~ 83 (126)
T PF07912_consen 10 DELTFDKVIP----KFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKED 83 (126)
T ss_dssp STTHHHHHGG----GSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC
T ss_pred cceehhheec----cCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCccc
Confidence 4578999994 7799999997653 2222345566666 332 37999998885 4556665 55 57
Q ss_pred ccEEEEEeCC-eEEEEe--eCC-CHHHHHHHHhhc
Q 032967 99 TPTFHFYRDG-ERVDEM--FGA-GEERLHDRLWLH 129 (130)
Q Consensus 99 ~Pt~~~~~~g-~~~~~~--~g~-~~~~l~~~l~~~ 129 (130)
+|.+.+|..| +...++ .|. +.+.|+.|+..+
T Consensus 84 fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 84 FPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp -SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred CCEEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 8999999744 466667 776 999999999876
No 213
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.73 E-value=0.23 Score=38.27 Aligned_cols=83 Identities=13% Similarity=0.115 Sum_probs=58.5
Q ss_pred hHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhcCCccccEEEEEeCCeEE-
Q 032967 33 DQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQHIRYTPTFHFYRDGERV- 111 (130)
Q Consensus 33 ~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~~v~~~Pt~~~~~~g~~~- 111 (130)
..++.+.++ .=.+++-+.++.+.|+.|..+...++++++.-+++.+-..+.. ...|+|.+..+|+..
T Consensus 7 ~~~l~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~---------~~~p~~~~~~~~~~~~ 74 (517)
T PRK15317 7 KTQLKQYLE---LLERPIELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD---------VRKPSFSITRPGEDTG 74 (517)
T ss_pred HHHHHHHHH---hCCCCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC---------CCCCEEEEEcCCccce
Confidence 355666665 3445555555555899999999999999988777776443211 247999998877543
Q ss_pred EEeeCC-CHHHHHHHHh
Q 032967 112 DEMFGA-GEERLHDRLW 127 (130)
Q Consensus 112 ~~~~g~-~~~~l~~~l~ 127 (130)
-+|.|. .-.++..+|.
T Consensus 75 i~f~g~P~g~Ef~s~i~ 91 (517)
T PRK15317 75 VRFAGIPMGHEFTSLVL 91 (517)
T ss_pred EEEEecCccHHHHHHHH
Confidence 588899 7888887764
No 214
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=95.70 E-value=0.0058 Score=37.34 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=42.6
Q ss_pred EEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhh----c--CCccccEEEEE-eCCeEE------EEeeCCC
Q 032967 52 INYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETT----Q--HIRYTPTFHFY-RDGERV------DEMFGAG 118 (130)
Q Consensus 52 v~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~----~--~v~~~Pt~~~~-~~g~~~------~~~~g~~ 118 (130)
..|+.++|+.|+.....+++. ++.|-.+|+.+.+... . +..+.|.--++ +.|... ....+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~s 76 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKLPSLS 76 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcccccccCC
Confidence 469999999999988666653 5777778877655332 2 33344432222 222211 1122346
Q ss_pred HHHHHHHHhhc
Q 032967 119 EERLHDRLWLH 129 (130)
Q Consensus 119 ~~~l~~~l~~~ 129 (130)
.+++.+++.++
T Consensus 77 ~~e~~~~l~~~ 87 (111)
T cd03036 77 EEEALELLSSD 87 (111)
T ss_pred HHHHHHHHHhC
Confidence 67777777654
No 215
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.084 Score=38.94 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=67.7
Q ss_pred hHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc--CCccccEEEEEeCCeE
Q 032967 33 DQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRDGER 110 (130)
Q Consensus 33 ~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g~~ 110 (130)
..++.+.+. .-.+..-+=-|+|-.|..|-.....+.-++-..|++.-..||-.-+.+-.. +|.++||+++ ||+.
T Consensus 104 ~q~vieqik--~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe~ 179 (520)
T COG3634 104 DQDVIEQIK--AIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVFL--NGEE 179 (520)
T ss_pred hHHHHHHHH--hcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEEE--cchh
Confidence 345555554 346677888899999999999888888888778899999998875544333 9999999765 8876
Q ss_pred EEEeeCC-CHHHHHHHHh
Q 032967 111 VDEMFGA-GEERLHDRLW 127 (130)
Q Consensus 111 ~~~~~g~-~~~~l~~~l~ 127 (130)
.. .|. +.++|.+.|.
T Consensus 180 fg--~GRmtleeilaki~ 195 (520)
T COG3634 180 FG--QGRMTLEEILAKID 195 (520)
T ss_pred hc--ccceeHHHHHHHhc
Confidence 53 577 8888887765
No 216
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=95.57 E-value=0.021 Score=34.38 Aligned_cols=36 Identities=17% Similarity=0.339 Sum_probs=26.5
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChh
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPE 91 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~ 91 (130)
+..|+.++|+.|+.....+++. ++.+-.+|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~ 36 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLKEPP 36 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc-----CCCcEEEeeccCCC
Confidence 3579999999999988666653 56666777765443
No 217
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=95.31 E-value=0.41 Score=30.42 Aligned_cols=92 Identities=12% Similarity=0.114 Sum_probs=61.5
Q ss_pred HHHHHHHHh----hcCCCcEEEEEeCCCCH----hHHhh--HHHHHHHHhhCCCeEEEEEECCCChhh------------
Q 032967 35 NHKDILLQI----KSSKIPAVINYGASWCG----VCNQI--LPAFCKLSNNFPKLSFIYADIDECPET------------ 92 (130)
Q Consensus 35 ~~~~~i~~~----~~~~~~~lv~f~s~~C~----~C~~~--~~~~~~l~~~~~~v~~~~id~~~~~~~------------ 92 (130)
.|.+.+..+ ....|+.+|+.+++.-. -|+.. .+.+.++-+. ++.+..-|++.....
T Consensus 5 s~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~--nfv~Wg~dvt~~~~~~~fl~~~~~~~g 82 (136)
T cd02990 5 SLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQ--NFITWGWDMTKESNKARFLSSCTRHFG 82 (136)
T ss_pred cHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHc--CEEEEeeeccchhhhhHHHHhhhhhhh
Confidence 456666655 56789999999999764 45543 2333444332 577777888754311
Q ss_pred ------hc--CCccccEEEEEe--CC--eEEEEeeCC-CHHHHHHHHhh
Q 032967 93 ------TQ--HIRYTPTFHFYR--DG--ERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 93 ------~~--~v~~~Pt~~~~~--~g--~~~~~~~g~-~~~~l~~~l~~ 128 (130)
.. +...+|.+.+.- .+ +.+.+..|. +++++.+.|..
T Consensus 83 ~~a~~~~~~~~~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~ 131 (136)
T cd02990 83 SVAAQTIRNIKTDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIE 131 (136)
T ss_pred HHHHHHHHhcCcCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHH
Confidence 11 578899876663 22 577899999 99999988764
No 218
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.24 E-value=0.43 Score=36.79 Aligned_cols=84 Identities=19% Similarity=0.222 Sum_probs=58.4
Q ss_pred hHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhcCCccccEEEEEeCCeE-E
Q 032967 33 DQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQHIRYTPTFHFYRDGER-V 111 (130)
Q Consensus 33 ~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~~v~~~Pt~~~~~~g~~-~ 111 (130)
..++.+.++ .=.+++-+.++.+.|+.|..+...++++++.-+++.+...+.+. ...|+|.+..+|+. -
T Consensus 7 ~~~l~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~--------~~~p~~~~~~~~~~~~ 75 (515)
T TIGR03140 7 LAQLKSYLA---SLENPVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTADT--------LRKPSFTILRDGADTG 75 (515)
T ss_pred HHHHHHHHH---hcCCCEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecCCc--------CCCCeEEEecCCcccc
Confidence 456666665 34455545444447999999999999998877777775444221 34699988887763 3
Q ss_pred EEeeCC-CHHHHHHHHh
Q 032967 112 DEMFGA-GEERLHDRLW 127 (130)
Q Consensus 112 ~~~~g~-~~~~l~~~l~ 127 (130)
-+|.|. .-.++..+|.
T Consensus 76 i~f~g~P~g~Ef~s~i~ 92 (515)
T TIGR03140 76 IRFAGIPGGHEFTSLVL 92 (515)
T ss_pred eEEEecCCcHHHHHHHH
Confidence 688898 7788877764
No 219
>PHA03075 glutaredoxin-like protein; Provisional
Probab=95.22 E-value=0.049 Score=33.39 Aligned_cols=30 Identities=27% Similarity=0.617 Sum_probs=27.5
Q ss_pred CcEEEEEeCCCCHhHHhhHHHHHHHHhhCC
Q 032967 48 IPAVINYGASWCGVCNQILPAFCKLSNNFP 77 (130)
Q Consensus 48 ~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~ 77 (130)
+.++|.|.-|.|+-|......+.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568999999999999999999999998885
No 220
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=94.89 E-value=0.18 Score=28.40 Aligned_cols=56 Identities=16% Similarity=0.158 Sum_probs=45.5
Q ss_pred EEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCChhhhc--CCccccEEEEE
Q 032967 50 AVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDECPETTQ--HIRYTPTFHFY 105 (130)
Q Consensus 50 ~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~~~~~--~v~~~Pt~~~~ 105 (130)
.+..|-+...+..+.....+.++.+++. .+.+-.||+.++|.++. +|-.+||++-.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 4566777777999999999988877764 57777899999999998 89999997643
No 221
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=94.69 E-value=0.061 Score=32.53 Aligned_cols=35 Identities=11% Similarity=0.225 Sum_probs=25.7
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCCh
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECP 90 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~ 90 (130)
+..|+.++|+.|+.+...+.+- ++.+-.+|+.+.+
T Consensus 1 i~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~~p 35 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRKDG 35 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccCC
Confidence 3579999999999988666544 5666667776554
No 222
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=94.66 E-value=0.075 Score=33.44 Aligned_cols=35 Identities=17% Similarity=0.318 Sum_probs=25.3
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCCh
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECP 90 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~ 90 (130)
+..|+.++|+.|+.+...+.+. ++.+-.+|+.+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeeccCCh
Confidence 5679999999999988666544 5566666765544
No 223
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=94.57 E-value=0.093 Score=32.23 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=26.6
Q ss_pred EEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChh
Q 032967 52 INYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPE 91 (130)
Q Consensus 52 v~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~ 91 (130)
..|+.++|+.|+.+...+++- ++.+-.+|+.+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~ 36 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN-----GIEYQFIDIGEDGP 36 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCceEEEecCCChh
Confidence 468999999999988766663 56677788776554
No 224
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=94.54 E-value=0.037 Score=35.75 Aligned_cols=45 Identities=11% Similarity=0.314 Sum_probs=33.9
Q ss_pred CCCcEEEEEeCCCCHhHHhh-HHHHHHHHhhCC--Ce-EEEEEECCCCh
Q 032967 46 SKIPAVINYGASWCGVCNQI-LPAFCKLSNNFP--KL-SFIYADIDECP 90 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~-~~~~~~l~~~~~--~v-~~~~id~~~~~ 90 (130)
++..+|+.|.+.||+.|... .+.+.+...+|. ++ .++.|..+...
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~ 77 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPF 77 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHH
Confidence 44567777778899999998 888988888875 56 57777776433
No 225
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=0.91 Score=29.57 Aligned_cols=84 Identities=14% Similarity=0.098 Sum_probs=55.8
Q ss_pred CCCcEEEEEeC-CCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCChhh---------------------hc--CCc--
Q 032967 46 SKIPAVINYGA-SWCGVCNQILPAFCKLSNNFP--KLSFIYADIDECPET---------------------TQ--HIR-- 97 (130)
Q Consensus 46 ~~~~~lv~f~s-~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~~~---------------------~~--~v~-- 97 (130)
.++++|++||- .+++.|-...-.|+....+|. ++.++.|..|....+ +. ++.
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~ 108 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGE 108 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccc
Confidence 55688888875 588999988888888877776 688888877654332 21 221
Q ss_pred ----------ccc-EEEEEeCCeEEEEeeCC----CHHHHHHHHhhc
Q 032967 98 ----------YTP-TFHFYRDGERVDEMFGA----GEERLHDRLWLH 129 (130)
Q Consensus 98 ----------~~P-t~~~~~~g~~~~~~~g~----~~~~l~~~l~~~ 129 (130)
..+ ||++-++|.+....... ..+++.+.|++.
T Consensus 109 k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 109 KKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred cccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 224 56776788877665444 356777777653
No 226
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=94.06 E-value=0.45 Score=26.65 Aligned_cols=68 Identities=12% Similarity=0.090 Sum_probs=38.7
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCCh----hhhc--CCccccEEEEEeCCeEEEEeeCCCHHHHHH
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECP----ETTQ--HIRYTPTFHFYRDGERVDEMFGAGEERLHD 124 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~----~~~~--~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~ 124 (130)
+..|+.++|+.|++..-.+.+. ++.+-.++++... ++.. +...+|+++.-.+|..+ .....|.+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l-----~es~~I~~ 71 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQM-----FESADIVK 71 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc-----CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEE-----EcHHHHHH
Confidence 3567888999999887666554 3444445554322 2222 55689998642234221 14556666
Q ss_pred HHhh
Q 032967 125 RLWL 128 (130)
Q Consensus 125 ~l~~ 128 (130)
+|.+
T Consensus 72 yL~~ 75 (77)
T cd03041 72 YLFK 75 (77)
T ss_pred HHHH
Confidence 6554
No 227
>PRK12559 transcriptional regulator Spx; Provisional
Probab=93.73 E-value=0.16 Score=32.03 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=23.9
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCC
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDEC 89 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~ 89 (130)
+..|+.++|+.|+.....+++- ++.+-.+|+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEeeCC
Confidence 5689999999999988665543 455555565543
No 228
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=93.63 E-value=0.19 Score=30.73 Aligned_cols=35 Identities=14% Similarity=0.299 Sum_probs=25.3
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCCh
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECP 90 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~ 90 (130)
+..|+.++|+.|+.....+++. ++.+-.+|+.+.+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~~~ 36 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFKQP 36 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCCCc
Confidence 4578999999999988766653 4556666765543
No 229
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=93.54 E-value=0.3 Score=26.84 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=33.9
Q ss_pred EEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCC-Chhhhc--CCccccEEEEEeCCeE
Q 032967 52 INYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDE-CPETTQ--HIRYTPTFHFYRDGER 110 (130)
Q Consensus 52 v~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~-~~~~~~--~v~~~Pt~~~~~~g~~ 110 (130)
+.|+.+||+.|++..-.+.+..- .+.+..+|... .+++.. ....+|++.. .+|..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl---~~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~ 59 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI---TVELREVELKNKPAEMLAASPKGTVPVLVL-GNGTV 59 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC---CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcE
Confidence 45889999999998766555432 34455555542 234433 6678999864 23543
No 230
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=93.40 E-value=0.49 Score=33.15 Aligned_cols=58 Identities=22% Similarity=0.237 Sum_probs=38.5
Q ss_pred cCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhcCCccccEEEEEe
Q 032967 45 SSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQHIRYTPTFHFYR 106 (130)
Q Consensus 45 ~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~~v~~~Pt~~~~~ 106 (130)
..+|+.+++..+.||+.|...+=.+--.-.+|.++... .+.... .+.-..+|++++..
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~-~~~S~~---~d~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLE-YHYSDP---YDNYPNTPTLIFNN 113 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeE-EeecCc---ccCCCCCCeEEEec
Confidence 58899999999999999998775554445567766333 222221 11335778877653
No 231
>PRK09301 circadian clock protein KaiB; Provisional
Probab=92.73 E-value=1.1 Score=27.08 Aligned_cols=78 Identities=17% Similarity=0.110 Sum_probs=59.3
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCChhhhc--CCccccEEEEEeCCeEEEEeeCC--CH
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDECPETTQ--HIRYTPTFHFYRDGERVDEMFGA--GE 119 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g~~~~~~~g~--~~ 119 (130)
+...++=.|.+..-+..++....+.++.+.+- .+.+-.||+.+.|.++. +|-.+||++=... ....|+.|- +.
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P-~P~rriiGDlsd~ 82 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILP-PPVRKIIGDLSDR 82 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCC-CCcceeecccccH
Confidence 45677888889999999999999999866543 46777799999999998 9999999764433 245677777 45
Q ss_pred HHHHH
Q 032967 120 ERLHD 124 (130)
Q Consensus 120 ~~l~~ 124 (130)
+.+..
T Consensus 83 ~kVL~ 87 (103)
T PRK09301 83 EKVLI 87 (103)
T ss_pred HHHHH
Confidence 55543
No 232
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=92.71 E-value=0.55 Score=27.45 Aligned_cols=74 Identities=18% Similarity=0.139 Sum_probs=55.4
Q ss_pred CcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCChhhhc--CCccccEEEEEeCCeEEEEeeCC--CHHH
Q 032967 48 IPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDECPETTQ--HIRYTPTFHFYRDGERVDEMFGA--GEER 121 (130)
Q Consensus 48 ~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g~~~~~~~g~--~~~~ 121 (130)
..++=.|.+..-+.+++....+.++.+.+- .+.+-.||+.++|.++. ++-.+||++=...+ ...++.|- +.+.
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~-P~rriiGdls~~~~ 81 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPP-PVRKIIGDLSDRER 81 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCC-CcceeeccccchHH
Confidence 456667888888999999999988866543 46777799999999998 89999997754332 45677777 4444
Q ss_pred H
Q 032967 122 L 122 (130)
Q Consensus 122 l 122 (130)
+
T Consensus 82 v 82 (87)
T TIGR02654 82 V 82 (87)
T ss_pred H
Confidence 3
No 233
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=92.33 E-value=0.36 Score=30.40 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=23.8
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCC
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDEC 89 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~ 89 (130)
+..|+.++|+.|+.+...+++- ++.+-.+|+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-----QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEECCCC
Confidence 4578999999999987555443 455666666544
No 234
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=92.32 E-value=0.33 Score=27.03 Aligned_cols=50 Identities=10% Similarity=0.208 Sum_probs=30.9
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCC--Chhhhc-CCccccEEEEE
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDE--CPETTQ-HIRYTPTFHFY 105 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~--~~~~~~-~v~~~Pt~~~~ 105 (130)
+..|+.+.|+.|+...-.+... ++.+-.++++. .+++.. +...+|++..-
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-----gi~y~~~~~~~~~~~~~~~~~~~~vP~l~~~ 54 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-----GIPYEVVEVNPVSRKEIKWSSYKKVPILRVE 54 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-----CCceEEEECCchhHHHHHHhCCCccCEEEEC
Confidence 4568889999999988655554 33333334432 223333 56789998764
No 235
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=91.86 E-value=0.5 Score=31.18 Aligned_cols=32 Identities=22% Similarity=0.498 Sum_probs=24.6
Q ss_pred EEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEE
Q 032967 53 NYGASWCGVCNQILPAFCKLSNNFP-KLSFIYA 84 (130)
Q Consensus 53 ~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~i 84 (130)
+|+.|.|+.|-...|.+.++..+|+ .+.+-.|
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 6999999999999999999999998 4555443
No 236
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=91.44 E-value=3.4 Score=31.26 Aligned_cols=92 Identities=11% Similarity=0.099 Sum_probs=56.5
Q ss_pred HHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHH-HH-HHH-HhhCC-CeEEEEEECCCChhhhc----CCccccEEEEE-e
Q 032967 36 HKDILLQIKSSKIPAVINYGASWCGVCNQILP-AF-CKL-SNNFP-KLSFIYADIDECPETTQ----HIRYTPTFHFY-R 106 (130)
Q Consensus 36 ~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~-~~-~~l-~~~~~-~v~~~~id~~~~~~~~~----~v~~~Pt~~~~-~ 106 (130)
+-..|..+ ..++.++|.|-+..-.....+.. .| ... ++.+. .+.-++|+........+ .+..+|++++. .
T Consensus 8 ipeAIa~a-K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~ 86 (506)
T KOG2507|consen 8 IPEAIAEA-KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGF 86 (506)
T ss_pred hHHHHHHh-hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecC
Confidence 34445433 35566777777777777777662 33 222 22222 35555555543322222 56678875544 7
Q ss_pred CCeEEEEeeCC-CHHHHHHHHhh
Q 032967 107 DGERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 107 ~g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
.|..+....|. +.++|...|.+
T Consensus 87 sGtpLevitg~v~adeL~~~i~K 109 (506)
T KOG2507|consen 87 SGTPLEVITGFVTADELASSIEK 109 (506)
T ss_pred CCceeEEeeccccHHHHHHHHHH
Confidence 99999999999 99999888865
No 237
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=91.32 E-value=0.69 Score=25.17 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=31.1
Q ss_pred EEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCC----Chhhhc--CCccccEEEE
Q 032967 52 INYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDE----CPETTQ--HIRYTPTFHF 104 (130)
Q Consensus 52 v~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~----~~~~~~--~v~~~Pt~~~ 104 (130)
..|+.++|+.|++..-.+....-. .....++... .+++.. ....+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGID---VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCC---ceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 468889999999988776665333 3333444422 233333 5568899875
No 238
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=91.22 E-value=2.7 Score=26.88 Aligned_cols=71 Identities=17% Similarity=0.239 Sum_probs=46.0
Q ss_pred CcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc--CC----ccccEEEEEeCCeEEEEeeCC-CHH
Q 032967 48 IPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HI----RYTPTFHFYRDGERVDEMFGA-GEE 120 (130)
Q Consensus 48 ~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~--~v----~~~Pt~~~~~~g~~~~~~~g~-~~~ 120 (130)
..-++.|++|.|+=|......++.. ++.+-.+..+....+.+ +| .+.=|.++ +|..+. |. ..+
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~~-----Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy~vE---GHVPa~ 94 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKAN-----GFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGYYVE---GHVPAE 94 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHhC-----CcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCEEEe---ccCCHH
Confidence 4467889999999999988776621 45665566666555554 32 23334333 665543 66 888
Q ss_pred HHHHHHhh
Q 032967 121 RLHDRLWL 128 (130)
Q Consensus 121 ~l~~~l~~ 128 (130)
.+..+|..
T Consensus 95 aI~~ll~~ 102 (149)
T COG3019 95 AIARLLAE 102 (149)
T ss_pred HHHHHHhC
Confidence 88887764
No 239
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.97 E-value=0.82 Score=25.95 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=18.3
Q ss_pred EEEeCCCCHhHHhhHHHHHHHH
Q 032967 52 INYGASWCGVCNQILPAFCKLS 73 (130)
Q Consensus 52 v~f~s~~C~~C~~~~~~~~~l~ 73 (130)
+.|+|..||.|..+...++++.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~ 26 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN 26 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC
Confidence 5699999999998887777663
No 240
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=90.66 E-value=0.6 Score=24.62 Aligned_cols=50 Identities=10% Similarity=-0.020 Sum_probs=30.0
Q ss_pred EEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChh--hhc--CCccccEEEE
Q 032967 52 INYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPE--TTQ--HIRYTPTFHF 104 (130)
Q Consensus 52 v~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~--~~~--~v~~~Pt~~~ 104 (130)
..|+.++|+.|+...-.+....-. +....++...... +.. +...+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 357889999999887666655322 3333444332222 222 5678898765
No 241
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=90.61 E-value=0.69 Score=32.04 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=37.2
Q ss_pred hcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhh-----CCCeEEEEEECCC
Q 032967 44 KSSKIPAVINYGASWCGVCNQILPAFCKLSNN-----FPKLSFIYADIDE 88 (130)
Q Consensus 44 ~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~-----~~~v~~~~id~~~ 88 (130)
...+.++||.+-..+|..|..-...++.|..+ +++|.|+.||--.
T Consensus 23 ~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~ 72 (238)
T PF04592_consen 23 NSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQG 72 (238)
T ss_pred hcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCC
Confidence 46789999999999999999988888887644 4489999998653
No 242
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.11 E-value=0.74 Score=31.70 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=26.6
Q ss_pred CcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCe
Q 032967 48 IPAVINYGASWCGVCNQILPAFCKLSNNFPKL 79 (130)
Q Consensus 48 ~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v 79 (130)
...++.|....|++|++..|.+.+.....+++
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~ 116 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYIDDGKV 116 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhhcCCC
Confidence 77899999999999999999888866666544
No 243
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=90.06 E-value=0.59 Score=25.53 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=29.8
Q ss_pred EEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCC-hhhhc--CCccccEEE
Q 032967 52 INYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDEC-PETTQ--HIRYTPTFH 103 (130)
Q Consensus 52 v~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~-~~~~~--~v~~~Pt~~ 103 (130)
..|+.++|+.|++..-.+....-. .....+|.... +++.. ....+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS---VEIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc---cEEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 467889999999987666554322 33333444322 33333 567899774
No 244
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=90.05 E-value=1.9 Score=23.50 Aligned_cols=47 Identities=9% Similarity=0.046 Sum_probs=26.9
Q ss_pred EEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCC--hhhhc--CCccccEEEE
Q 032967 53 NYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDEC--PETTQ--HIRYTPTFHF 104 (130)
Q Consensus 53 ~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~--~~~~~--~v~~~Pt~~~ 104 (130)
.|+.++|++|++.+-.+... ++.+-.+.++.. ..... +-..+|++..
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~-----gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~~ 53 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK-----NIPVEQIILQNDDEATPIRMIGAKQVPILEK 53 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc-----CCCeEEEECCCCchHHHHHhcCCCccCEEEe
Confidence 57889999999877655544 333333333322 11111 4457898753
No 245
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=89.92 E-value=4.6 Score=27.46 Aligned_cols=75 Identities=17% Similarity=0.273 Sum_probs=47.8
Q ss_pred EEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCCh-----------hhh-------c----CCccccEEEEEeC
Q 032967 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECP-----------ETT-------Q----HIRYTPTFHFYRD 107 (130)
Q Consensus 50 ~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~-----------~~~-------~----~v~~~Pt~~~~~~ 107 (130)
+|=.|.|..|..|=.....+.+++.+ ++|..+...+|-=+ +.. . +--.+|.+++ |
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~-~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV--n 77 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAAR-PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV--N 77 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHH-TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE--T
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcC-CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE--C
Confidence 35578999999999999999999988 48888888776321 111 0 2236899887 8
Q ss_pred CeEEEEeeCCCHHHHHHHHhhc
Q 032967 108 GERVDEMFGAGEERLHDRLWLH 129 (130)
Q Consensus 108 g~~~~~~~g~~~~~l~~~l~~~ 129 (130)
|..- ..|.+.+.+...|.++
T Consensus 78 G~~~--~~g~~~~~~~~ai~~~ 97 (202)
T PF06764_consen 78 GREH--RVGSDRAAVEAAIQAA 97 (202)
T ss_dssp TTEE--EETT-HHHHHHHHHHH
T ss_pred Ceee--eeccCHHHHHHHHHHh
Confidence 8543 4676777777777653
No 246
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=89.44 E-value=1.2 Score=29.26 Aligned_cols=44 Identities=18% Similarity=0.490 Sum_probs=31.7
Q ss_pred CCCcEEEEEeCCCC-HhHHhhHHHHHHHHhhC----CCeEEEEEECCCC
Q 032967 46 SKIPAVINYGASWC-GVCNQILPAFCKLSNNF----PKLSFIYADIDEC 89 (130)
Q Consensus 46 ~~~~~lv~f~s~~C-~~C~~~~~~~~~l~~~~----~~v~~~~id~~~~ 89 (130)
.++++||.|.-+.| ..|-.....+.++.+.+ .++.++.|.+|-.
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~ 99 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPE 99 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTT
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCC
Confidence 78999999999999 56877666665554433 2688888888743
No 247
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.46 E-value=3.8 Score=24.64 Aligned_cols=64 Identities=27% Similarity=0.433 Sum_probs=41.7
Q ss_pred cCCCcEEEEEeCC---CCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc---CCccccEE-EEEeCCeEEE
Q 032967 45 SSKIPAVINYGAS---WCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ---HIRYTPTF-HFYRDGERVD 112 (130)
Q Consensus 45 ~~~~~~lv~f~s~---~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~---~v~~~Pt~-~~~~~g~~~~ 112 (130)
..+.++|.+=.+| -|+...++...+... .-+.|..+|+-.++++.. ....+||| .+|-+|+.+.
T Consensus 13 ~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~----g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvG 83 (105)
T COG0278 13 KENPVVLFMKGTPEFPQCGFSAQAVQILSAC----GVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVG 83 (105)
T ss_pred hcCceEEEecCCCCCCCCCccHHHHHHHHHc----CCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEec
Confidence 3666666666665 466666655444333 228899999999999987 44567763 5566887653
No 248
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=88.06 E-value=1.1 Score=27.41 Aligned_cols=33 Identities=12% Similarity=0.053 Sum_probs=22.2
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCC
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDE 88 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~ 88 (130)
+..|+.+.|..|+.....+++- ++.+-.+|+-+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~~ 34 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA-----GHEVEVRDLLT 34 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEeehhc
Confidence 4579999999999988666543 34444455443
No 249
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=87.95 E-value=0.9 Score=28.43 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=22.6
Q ss_pred CCccccEEEEEeCCeEEEEeeCC-CHHHHHHHHh
Q 032967 95 HIRYTPTFHFYRDGERVDEMFGA-GEERLHDRLW 127 (130)
Q Consensus 95 ~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~ 127 (130)
+|.++||+++ +|+ .+.|. +.+.|.+.|.
T Consensus 126 gi~gtPt~~v--~g~---~~~G~~~~~~l~~~i~ 154 (154)
T cd03023 126 GITGTPAFII--GDT---VIPGAVPADTLKEAID 154 (154)
T ss_pred CCCcCCeEEE--CCE---EecCCCCHHHHHHHhC
Confidence 8999999887 564 56788 8999988763
No 250
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=87.57 E-value=0.27 Score=35.30 Aligned_cols=82 Identities=16% Similarity=0.183 Sum_probs=55.3
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECC-CChhhhc--CCccccEEEEEeCCeEEEEeeCC-CHHH
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADID-ECPETTQ--HIRYTPTFHFYRDGERVDEMFGA-GEER 121 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~-~~~~~~~--~v~~~Pt~~~~~~g~~~~~~~g~-~~~~ 121 (130)
+..++=+.||+.||+..+...|.+.-....|+.+....++=. .-+.... ++.+.|+..+... .-..++.|. +...
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~-t~~~~~~~~r~l~s 153 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQ-TCPASYRGERDLAS 153 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeecc-ccchhhcccccHHH
Confidence 367888999999999999999999888888865555443211 1122222 7888898776533 344566677 7777
Q ss_pred HHHHHhh
Q 032967 122 LHDRLWL 128 (130)
Q Consensus 122 l~~~l~~ 128 (130)
|.++..+
T Consensus 154 Lv~fy~~ 160 (319)
T KOG2640|consen 154 LVNFYTE 160 (319)
T ss_pred HHHHHHh
Confidence 7776543
No 251
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=85.91 E-value=1.5 Score=26.79 Aligned_cols=33 Identities=9% Similarity=0.026 Sum_probs=23.1
Q ss_pred EEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCC
Q 032967 52 INYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDEC 89 (130)
Q Consensus 52 v~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~ 89 (130)
..|+.+.|..|++....+++- ++.+-.+|+.+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccCC
Confidence 479999999999988666553 444445665544
No 252
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=85.81 E-value=1.5 Score=26.62 Aligned_cols=34 Identities=12% Similarity=0.151 Sum_probs=23.1
Q ss_pred EEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCCh
Q 032967 52 INYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECP 90 (130)
Q Consensus 52 v~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~ 90 (130)
..|+.+.|..|+.+...+++- ++.+-.+|+-+.+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~~ 35 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEYLKTP 35 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEecccCC
Confidence 579999999999987555443 4555556665443
No 253
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=85.30 E-value=1.7 Score=23.69 Aligned_cols=50 Identities=18% Similarity=0.107 Sum_probs=31.1
Q ss_pred EEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCC----Chhhhc--CCccccEEEE
Q 032967 52 INYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDE----CPETTQ--HIRYTPTFHF 104 (130)
Q Consensus 52 v~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~----~~~~~~--~v~~~Pt~~~ 104 (130)
..|+.++|+.|++..-.+....-. +....+|..+ .+++.. ....+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~---~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLE---LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD 57 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCC---CEEEEecCccCCcCCHHHHhhCcCCCCCEEEE
Confidence 468899999999877666655333 3444455432 234333 5568899863
No 254
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=85.14 E-value=1.5 Score=28.76 Aligned_cols=27 Identities=22% Similarity=0.501 Sum_probs=24.9
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCC
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFP 77 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~ 77 (130)
|.+|+.+.|+.|-...+.++++.++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 678999999999999999999999984
No 255
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=84.92 E-value=0.52 Score=27.24 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=39.8
Q ss_pred EeCCCCHhHHhhHHHHHHHHhhC-C-CeEEEEEECCCChhhhc--CCccccEEE
Q 032967 54 YGASWCGVCNQILPAFCKLSNNF-P-KLSFIYADIDECPETTQ--HIRYTPTFH 103 (130)
Q Consensus 54 f~s~~C~~C~~~~~~~~~l~~~~-~-~v~~~~id~~~~~~~~~--~v~~~Pt~~ 103 (130)
|-+..-+....+...+..+.+.+ + .+.+-.||+.+.|.++. +|-.+||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 55556677788888888887664 3 68888899999999998 888999865
No 256
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=84.89 E-value=6.4 Score=23.67 Aligned_cols=93 Identities=11% Similarity=0.068 Sum_probs=55.3
Q ss_pred eeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCChhhhc--CCccccEEE
Q 032967 27 LKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPETTQ--HIRYTPTFH 103 (130)
Q Consensus 27 ~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~~~~~~--~v~~~Pt~~ 103 (130)
+..+.+.++++..+. ..+..++|-|+..--. .....+.++|..+. +..|+...- ..+.. ++ ..|.++
T Consensus 2 v~~i~s~~ele~f~~---~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~---~~~~~~~~~-~~~~vv 71 (107)
T cd03068 2 SKQLQTLKQVQEFLR---DGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFD---SEIFKSLKV-SPGQLV 71 (107)
T ss_pred ceEcCCHHHHHHHHh---cCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEECh---HHHHHhcCC-CCCceE
Confidence 456778888999885 3425666656555333 35667888998885 788854432 23322 44 346667
Q ss_pred EEeCC-------eEEEEeeCC---CHHHHHHHHhhc
Q 032967 104 FYRDG-------ERVDEMFGA---GEERLHDRLWLH 129 (130)
Q Consensus 104 ~~~~g-------~~~~~~~g~---~~~~l~~~l~~~ 129 (130)
+|+.- .....|.|. +.++|..||+.+
T Consensus 72 l~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 72 VFQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred EECcHHHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 76322 122344543 344599999864
No 257
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=84.57 E-value=1.8 Score=28.64 Aligned_cols=29 Identities=31% Similarity=0.382 Sum_probs=22.9
Q ss_pred CCccccEEEEEeCCeEEEEeeCC-CHHHHHHHHh
Q 032967 95 HIRYTPTFHFYRDGERVDEMFGA-GEERLHDRLW 127 (130)
Q Consensus 95 ~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~ 127 (130)
+|.++|||++ +|+ ....|. +.+.+.+.|+
T Consensus 172 gv~G~Pt~vv--~g~--~~~~G~~~~~~~~~~i~ 201 (201)
T cd03024 172 GISGVPFFVF--NGK--YAVSGAQPPEVFLQALR 201 (201)
T ss_pred CCCcCCEEEE--CCe--EeecCCCCHHHHHHHhC
Confidence 8999999998 664 236788 8999888763
No 258
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=84.36 E-value=7.3 Score=23.85 Aligned_cols=83 Identities=18% Similarity=0.179 Sum_probs=62.4
Q ss_pred cCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC---CeEEEEEECCCChhhhc--------CCccccEEEEEe--CCeEE
Q 032967 45 SSKIPAVINYGASWCGVCNQILPAFCKLSNNFP---KLSFIYADIDECPETTQ--------HIRYTPTFHFYR--DGERV 111 (130)
Q Consensus 45 ~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~---~v~~~~id~~~~~~~~~--------~v~~~Pt~~~~~--~g~~~ 111 (130)
.-++..++.|--+--+...++.+.+.++|+.+. ++.|+-||=+..|-+.. .+. -|.+=+.. +...+
T Consensus 18 d~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~-~PqIGVV~vtdadSv 96 (120)
T cd03074 18 DLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLF-RPQIGVVNVTDADSV 96 (120)
T ss_pred ccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccC-CCceeeEecccccce
Confidence 455889999999999999999999999999986 69999999999987753 333 47765553 33322
Q ss_pred -EEee---CC-CHHHHHHHHhh
Q 032967 112 -DEMF---GA-GEERLHDRLWL 128 (130)
Q Consensus 112 -~~~~---g~-~~~~l~~~l~~ 128 (130)
.... .. +.++|..||..
T Consensus 97 W~~m~~~~d~~t~~~Le~Wied 118 (120)
T cd03074 97 WMEMDDDEDLPTAEELEDWIED 118 (120)
T ss_pred eEecccccccCcHHHHHHHHHh
Confidence 2332 33 78999999864
No 259
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=83.17 E-value=8.2 Score=26.58 Aligned_cols=71 Identities=17% Similarity=0.126 Sum_probs=47.4
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc--CCccccEEEEEeCCeEEEEeeCC-CHHHHHHHHh
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRDGERVDEMFGA-GEERLHDRLW 127 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~ 127 (130)
+=.|....|..|-.+...+++=. -.++++| +++...+-++. +|-++|.++ .+|+.+ +-+. ++++|...+.
T Consensus 13 VkI~~HktC~ssy~Lf~~L~nkg-ll~~Vki--i~a~~p~f~~~~~~V~SvP~Vf--~DGel~--~~dpVdp~~ies~~~ 85 (265)
T COG5494 13 VKIFTHKTCVSSYMLFEYLENKG-LLGKVKI--IDAELPPFLAFEKGVISVPSVF--IDGELV--YADPVDPEEIESILS 85 (265)
T ss_pred EEEEEecchHHHHHHHHHHHhcC-CCCCceE--EEcCCChHHHhhcceeecceEE--EcCeEE--EcCCCCHHHHHHHHc
Confidence 34466778999988766554411 1346777 56665555554 888999865 488755 4566 8888888775
Q ss_pred h
Q 032967 128 L 128 (130)
Q Consensus 128 ~ 128 (130)
.
T Consensus 86 G 86 (265)
T COG5494 86 G 86 (265)
T ss_pred C
Confidence 3
No 260
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=82.25 E-value=2.7 Score=29.03 Aligned_cols=30 Identities=43% Similarity=0.541 Sum_probs=23.5
Q ss_pred CCccccEEEEEeCCeEEEEeeCC-CHHHHHHHHhh
Q 032967 95 HIRYTPTFHFYRDGERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 95 ~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
+|+++|+|++ +|+ ....|. +.+.+.+.|++
T Consensus 181 gI~gVP~fv~--d~~--~~V~Gaq~~~v~~~al~~ 211 (225)
T COG2761 181 GIRGVPTFVF--DGK--YAVSGAQPYDVLEDALRQ 211 (225)
T ss_pred CCccCceEEE--cCc--EeecCCCCHHHHHHHHHH
Confidence 8999999998 443 445788 88888888765
No 261
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=81.57 E-value=2.3 Score=27.85 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=21.7
Q ss_pred CCccccEEEEEeCCeEEEEeeCC-CHHHHHHHH
Q 032967 95 HIRYTPTFHFYRDGERVDEMFGA-GEERLHDRL 126 (130)
Q Consensus 95 ~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l 126 (130)
+|.++|+|++ +|+ .+.|. ..+.+.+.|
T Consensus 164 gi~gvPtfvv--~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 164 GVFGVPTFVV--DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred CCCcCCeEEE--CCe---eecccccHHHHHHHh
Confidence 8999999998 675 45688 788887765
No 262
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=81.55 E-value=10 Score=23.63 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=30.6
Q ss_pred CeEEEEEECCCChhh-------hc-----CCccccEEEEEeCCeEEEEeeCCCHHHHHHHHh
Q 032967 78 KLSFIYADIDECPET-------TQ-----HIRYTPTFHFYRDGERVDEMFGAGEERLHDRLW 127 (130)
Q Consensus 78 ~v~~~~id~~~~~~~-------~~-----~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~l~ 127 (130)
++.+.+.|...+|.. .. +...+|-+++ +|+++..-.-.+.++|.+|+.
T Consensus 40 gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dGeiv~~G~YPt~eEl~~~~~ 99 (123)
T PF06953_consen 40 GVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DGEIVKTGRYPTNEELAEWLG 99 (123)
T ss_dssp T-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TTEEEEESS---HHHHHHHHT
T ss_pred CceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CCEEEEecCCCCHHHHHHHhC
Confidence 799999999977643 11 7789997776 887665322228999999975
No 263
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=81.52 E-value=7.1 Score=22.38 Aligned_cols=51 Identities=8% Similarity=0.111 Sum_probs=31.2
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCC-hhhhc--CCccccEEEE
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDEC-PETTQ--HIRYTPTFHF 104 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~-~~~~~--~v~~~Pt~~~ 104 (130)
+..|+.+.|+.|++..-.+....- .+.+..++.... +++.. ....+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl---~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI---PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC---CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 455778889999987755555432 244445555432 22333 5668899874
No 264
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=80.09 E-value=6.7 Score=26.67 Aligned_cols=45 Identities=18% Similarity=0.446 Sum_probs=31.7
Q ss_pred cCCCcEEEEEeCCCCH-hHHhhHHHHHHHHhhCC-----CeEEEEEECCCC
Q 032967 45 SSKIPAVINYGASWCG-VCNQILPAFCKLSNNFP-----KLSFIYADIDEC 89 (130)
Q Consensus 45 ~~~~~~lv~f~s~~C~-~C~~~~~~~~~l~~~~~-----~v~~~~id~~~~ 89 (130)
-.+++++|+|.-+.|+ .|-.....+.++.++.. ++.++-|.+|..
T Consensus 65 l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPe 115 (207)
T COG1999 65 LKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPE 115 (207)
T ss_pred cCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCC
Confidence 3889999999988884 68877777766655543 466666665543
No 265
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=79.74 E-value=7.2 Score=22.94 Aligned_cols=56 Identities=16% Similarity=0.067 Sum_probs=30.8
Q ss_pred eCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCChhhhc------C----CccccEEEEEeCCeEEE
Q 032967 55 GASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDECPETTQ------H----IRYTPTFHFYRDGERVD 112 (130)
Q Consensus 55 ~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~~~~~------~----v~~~Pt~~~~~~g~~~~ 112 (130)
|.+.+...+.....-+.+..-+. +|.|-.+|++.+++... + -..+|.+++ +|..+.
T Consensus 5 Y~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi--~~~~iG 72 (92)
T cd03030 5 YIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFN--GDEYCG 72 (92)
T ss_pred EEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEE--CCEEee
Confidence 33333334444444434333332 79999999998776543 1 145677654 554443
No 266
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=79.59 E-value=5.3 Score=25.25 Aligned_cols=30 Identities=17% Similarity=0.435 Sum_probs=21.7
Q ss_pred EEEeC--CCCHhHHhhHHHHHHHHhhCCCeEEEEE
Q 032967 52 INYGA--SWCGVCNQILPAFCKLSNNFPKLSFIYA 84 (130)
Q Consensus 52 v~f~s--~~C~~C~~~~~~~~~l~~~~~~v~~~~i 84 (130)
|..|+ +-|..|.. +++++.++||++.+..+
T Consensus 99 i~l~te~~pC~SC~~---vi~qF~~~~pni~~~v~ 130 (133)
T PF14424_consen 99 IDLFTELPPCESCSN---VIEQFKKDFPNIKVNVV 130 (133)
T ss_pred EEEEecCCcChhHHH---HHHHHHHHCCCcEEEEe
Confidence 44555 45999986 77788888998777554
No 267
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=78.90 E-value=8.8 Score=21.15 Aligned_cols=54 Identities=6% Similarity=-0.066 Sum_probs=32.7
Q ss_pred EEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCC----Chhhhc--CCccccEEEEEeCCeE
Q 032967 52 INYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDE----CPETTQ--HIRYTPTFHFYRDGER 110 (130)
Q Consensus 52 v~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~----~~~~~~--~v~~~Pt~~~~~~g~~ 110 (130)
..|+.+.|+.|++..-.+.+..- .+.+..+|... .+++.. ....+|++. .+|..
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~ 61 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL---RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNI 61 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC---CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEE
Confidence 46888899999887755544432 34455555532 233444 556889986 36643
No 268
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=77.97 E-value=4 Score=25.18 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=18.9
Q ss_pred EEEEEeCCCCHhHHhhHHHHHHHH
Q 032967 50 AVINYGASWCGVCNQILPAFCKLS 73 (130)
Q Consensus 50 ~lv~f~s~~C~~C~~~~~~~~~l~ 73 (130)
.+-.|+.+.|..|+.....+++..
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~g 25 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHG 25 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcC
Confidence 356799999999999887666543
No 269
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=76.74 E-value=10 Score=20.80 Aligned_cols=66 Identities=18% Similarity=0.165 Sum_probs=39.1
Q ss_pred EEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCC-hhhhc--CCccccEEEEEeCCeEEEEeeCCCHHHHHHHHhh
Q 032967 53 NYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDEC-PETTQ--HIRYTPTFHFYRDGERVDEMFGAGEERLHDRLWL 128 (130)
Q Consensus 53 ~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~-~~~~~--~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~l~~ 128 (130)
.|+.++|+.|+++.=.++...- .+.+..++.... +.+.. .-..+|++. .+|..+. ....|.++|.+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~-----dS~~I~~yL~~ 69 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT-----DSAAIIEYLEE 69 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE-----SHHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhhcccccceEEE--ECCEEEe-----CHHHHHHHHHH
Confidence 4788999999998755544321 244445554432 33333 566899987 5565332 45555555554
No 270
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=76.55 E-value=6.1 Score=23.76 Aligned_cols=32 Identities=22% Similarity=0.534 Sum_probs=20.6
Q ss_pred EeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCCh
Q 032967 54 YGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECP 90 (130)
Q Consensus 54 f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~ 90 (130)
|+.+.|..|+.+...+++- ++.+-.+|..+.+
T Consensus 1 Y~~~~C~t~rka~~~L~~~-----gi~~~~~d~~k~p 32 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN-----GIEYEFIDYKKEP 32 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT-----T--EEEEETTTS-
T ss_pred CcCCCCHHHHHHHHHHHHc-----CCCeEeehhhhCC
Confidence 6889999999988666642 5666678887654
No 271
>PRK10026 arsenate reductase; Provisional
Probab=75.18 E-value=6.6 Score=25.11 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=22.7
Q ss_pred EEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECC
Q 032967 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADID 87 (130)
Q Consensus 50 ~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~ 87 (130)
.+..|+.+.|..|+.....+++. ++.+-.+|.-
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~-----gi~~~~~d~~ 35 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNS-----GTEPTIIHYL 35 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeee
Confidence 35679999999999988666554 3444445543
No 272
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=75.09 E-value=18 Score=22.87 Aligned_cols=98 Identities=18% Similarity=0.267 Sum_probs=49.2
Q ss_pred CceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHH-hhHHHHHHHHhh-C-CCeEEEEEECCCChhhhc-------
Q 032967 25 GHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCN-QILPAFCKLSNN-F-PKLSFIYADIDECPETTQ------- 94 (130)
Q Consensus 25 ~~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~-~~~~~~~~l~~~-~-~~v~~~~id~~~~~~~~~------- 94 (130)
....++.|.++.++.+. +.++.+||.. .+-|+=-. ..+|........ . |+ .++.|=.....+-..
T Consensus 16 ~Gf~eL~T~e~Vd~~~~---~~~GTtlVvV-NSVCGCAag~ARPa~~~al~~~kkPD-~lvTVFAGqDkEAt~~aR~yf~ 90 (136)
T PF06491_consen 16 AGFEELTTAEEVDEALK---NKEGTTLVVV-NSVCGCAAGNARPAAAMALQNDKKPD-HLVTVFAGQDKEATAKAREYFE 90 (136)
T ss_dssp TT-EE--SHHHHHHHHH---H--SEEEEEE-E-SSHHHHHTHHHHHHHHHHHSS--S-EEEEEETTTSHHHHHHHHHTST
T ss_pred cCccccCCHHHHHHHHh---CCCCcEEEEE-eccccccccccCHHHHHHHhCCCCCC-ceEEeccCCCHHHHHHHHHhcC
Confidence 34567889999999995 4555555544 55666333 445655443322 2 23 222333333333221
Q ss_pred -CCccccEEEEEeCCeEEEEe-----eCCCHHHHHHHHh
Q 032967 95 -HIRYTPTFHFYRDGERVDEM-----FGAGEERLHDRLW 127 (130)
Q Consensus 95 -~v~~~Pt~~~~~~g~~~~~~-----~g~~~~~l~~~l~ 127 (130)
--.+-|++.+|++|+.+.-+ -|.+.+.|.+-|.
T Consensus 91 ~~pPSSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~ 129 (136)
T PF06491_consen 91 PYPPSSPSIALFKDGELVHFIERHHIEGRPAEEIAENLQ 129 (136)
T ss_dssp TS---SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHH
T ss_pred CCCCCCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHH
Confidence 12466899999999977533 3556666665554
No 273
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=74.77 E-value=5.6 Score=27.34 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=23.6
Q ss_pred CCccccEEEEEeCCeEEEEeeCC-CHHHHHHHHhhc
Q 032967 95 HIRYTPTFHFYRDGERVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 95 ~v~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 129 (130)
++.++|||++ +|+ .+.|. +.++|.+.|...
T Consensus 212 gv~gTPt~~v--~~~---~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 212 GVNGTPTFIV--NGK---LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred CCCcCCeEEE--CCe---eecCCCCHHHHHHHHHHh
Confidence 7899999987 444 56788 788998888754
No 274
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=73.44 E-value=6.4 Score=24.59 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=18.4
Q ss_pred EEEEEeCCCCHhHHhhHHHHHHH
Q 032967 50 AVINYGASWCGVCNQILPAFCKL 72 (130)
Q Consensus 50 ~lv~f~s~~C~~C~~~~~~~~~l 72 (130)
.+..|+.+.|..|+.....+++-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~ 24 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKAS 24 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHC
Confidence 35679999999999988766654
No 275
>PRK10853 putative reductase; Provisional
Probab=72.36 E-value=5.8 Score=24.42 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=17.3
Q ss_pred EEEEeCCCCHhHHhhHHHHHH
Q 032967 51 VINYGASWCGVCNQILPAFCK 71 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~ 71 (130)
+..|+.+.|..|+.+...+++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~ 22 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEA 22 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHH
Confidence 457899999999998876664
No 276
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=72.28 E-value=22 Score=26.31 Aligned_cols=32 Identities=13% Similarity=-0.010 Sum_probs=27.1
Q ss_pred cccEEEEEeCCeEEEEeeCC-CHHHHHHHHhhc
Q 032967 98 YTPTFHFYRDGERVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 98 ~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 129 (130)
+.|.-.+|.+|+.+.++.+. -.|+|...++.+
T Consensus 318 ~~~~~~~f~~g~~~~~~~~~~~~eel~~~i~~~ 350 (361)
T COG0821 318 GKGSGPVFVKGEIIKKLPEEDIVEELEALIEAY 350 (361)
T ss_pred CCCeeEEEECCeEEEecChhhHHHHHHHHHHHH
Confidence 36899999999999999988 788888877653
No 277
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=71.84 E-value=18 Score=26.87 Aligned_cols=98 Identities=15% Similarity=0.188 Sum_probs=55.3
Q ss_pred eeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHH-hhHHHHHHHHhhCCC----eEEEEEECC-CC---hhhhc-CC
Q 032967 27 LKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCN-QILPAFCKLSNNFPK----LSFIYADID-EC---PETTQ-HI 96 (130)
Q Consensus 27 ~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~-~~~~~~~~l~~~~~~----v~~~~id~~-~~---~~~~~-~v 96 (130)
+.++.-..+.-+.+. ..+..+.++. =|.|+.|. .......++.+.|.+ +++...-|. .. ...++ ++
T Consensus 246 ~~EV~va~~IL~slg--lr~~g~~Iis--CPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGI 321 (360)
T PRK00366 246 VEEVKVGQEILQSLG--LRSRGPEVIS--CPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGI 321 (360)
T ss_pred HHHHHHHHHHHHHcC--CccCCCeEEE--CCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeE
Confidence 444544555555554 2344555543 23366655 333444556666542 555555552 11 22233 66
Q ss_pred cccc-EEEEEeCCeEEEEeeCC-CHHHHHHHHhh
Q 032967 97 RYTP-TFHFYRDGERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 97 ~~~P-t~~~~~~g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
.+-+ ..++|.+|+.+.++.+. -.++|.+.|.+
T Consensus 322 aG~~~~~~vf~~Gk~v~kv~~~~~~~~l~~~i~~ 355 (360)
T PRK00366 322 AGGNPKGPVFVDGEKIKTLPEENIVEELEAEIEA 355 (360)
T ss_pred ecCCCceEEEECCEEeeeeChHhHHHHHHHHHHH
Confidence 6554 69999999999988877 66677666654
No 278
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=70.66 E-value=24 Score=22.26 Aligned_cols=88 Identities=19% Similarity=0.140 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc--CCccccEEEEEeCCe--
Q 032967 34 QNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRDGE-- 109 (130)
Q Consensus 34 ~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~g~-- 109 (130)
..+.+.+.++..-+.++++.=.-.. .-++....+.++...-.. ..+.+ +|.+-. +|+.+|+|++.+++.
T Consensus 12 ~~Lk~l~~~a~~~g~~~VlRG~~~~--~~~~T~~~i~~L~~~~~~---~~v~I--dP~lF~~f~I~~VPa~V~~~~~~~c 84 (130)
T TIGR02742 12 PLLKQLLDQAEALGAPLVIRGLLDN--GFKATATRIQSLIKDGGK---SGVQI--DPQWFKQFDITAVPAFVVVKDGLAC 84 (130)
T ss_pred HHHHHHHHHHHHhCCeEEEeCCCCC--CHHHHHHHHHHHHhcCCC---CcEEE--ChHHHhhcCceEcCEEEEECCCCcc
Confidence 4455555554455555555444443 223444444444433322 12222 466544 999999999998874
Q ss_pred ---------EEEEeeCC-CHHHHHHHHhh
Q 032967 110 ---------RVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 110 ---------~~~~~~g~-~~~~l~~~l~~ 128 (130)
...+..|. +.+.-.+.+.+
T Consensus 85 ~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~ 113 (130)
T TIGR02742 85 LPEQPCPESDYDVVYGNVSLKGALEKMAQ 113 (130)
T ss_pred cccCCCCCCCeeEEEecccHHHHHHHHHH
Confidence 46678888 87776666653
No 279
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=70.30 E-value=7 Score=23.39 Aligned_cols=43 Identities=21% Similarity=0.064 Sum_probs=25.0
Q ss_pred EEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCChhhhc
Q 032967 52 INYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDECPETTQ 94 (130)
Q Consensus 52 v~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~~~~~ 94 (130)
|.+|.+.+.....+...-+++..-+. +|.|-.+|+..+++...
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~ 47 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQ 47 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHH
Confidence 44555556666667666666654443 79999999998766543
No 280
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=66.62 E-value=27 Score=21.29 Aligned_cols=69 Identities=17% Similarity=0.135 Sum_probs=37.4
Q ss_pred hHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc--CCccccEEEEEeC
Q 032967 33 DQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYTPTFHFYRD 107 (130)
Q Consensus 33 ~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~--~v~~~Pt~~~~~~ 107 (130)
...+.+.+..+...+.++++.=..+. .-+.....+.++..+-+.. ..+.+ +|.+-. +|+.+|++++.++
T Consensus 10 ~~~L~~l~~~a~~~~~~~V~RG~~~g--~~~~t~~~~~~l~~~~~~~--~~v~I--dP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 10 DASLRNLLKQAERAGVVVVFRGFPDG--SFKPTAKAIQELLRKDDPC--PGVQI--DPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHHHhCCcEEEEECCCCC--CHHHHHHHHHHHhhccCCC--cceeE--ChhHHhhCCceEcCEEEEEcC
Confidence 34566666654444444444333333 4444444555554444322 12222 465544 9999999999887
No 281
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=65.71 E-value=14 Score=27.27 Aligned_cols=95 Identities=8% Similarity=0.013 Sum_probs=49.6
Q ss_pred eeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHH-hhHHHHHHHHhhCC----CeEEEEEECC--CChh--hhc-CC
Q 032967 27 LKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCN-QILPAFCKLSNNFP----KLSFIYADID--ECPE--TTQ-HI 96 (130)
Q Consensus 27 ~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~-~~~~~~~~l~~~~~----~v~~~~id~~--~~~~--~~~-~v 96 (130)
+.++....+.-+.+. ..+..+-+ ..=|.|+.|. .+.....++.+.+. .+++..+-|. ...+ -++ +|
T Consensus 237 ~~EV~va~~IL~slg--lr~~g~~i--iSCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGI 312 (346)
T TIGR00612 237 THEVPVAFEILQSLG--LRARGVEI--VACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGI 312 (346)
T ss_pred HHHHHHHHHHHHHcC--CCcCCCeE--EECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeee
Confidence 344444455555554 23334444 4456677666 33444455544443 3555544443 2222 233 55
Q ss_pred ccc--cEEEEEeCCeEEEEeeCC-CHHHHHHH
Q 032967 97 RYT--PTFHFYRDGERVDEMFGA-GEERLHDR 125 (130)
Q Consensus 97 ~~~--Pt~~~~~~g~~~~~~~g~-~~~~l~~~ 125 (130)
.+- -..++|++|+.+.+..+. -.++|.+.
T Consensus 313 aggg~g~~~lF~~G~~~~kv~~~~~~~~l~~~ 344 (346)
T TIGR00612 313 SGGGTGSAILFKRGKPKAKQPETDMADELIRL 344 (346)
T ss_pred ecCCCCceEEEECCEEeEecCHHHHHHHHHHh
Confidence 443 368889999988776655 44444443
No 282
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=65.69 E-value=36 Score=25.38 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=42.1
Q ss_pred CHhHHhh----HHHHHHHHhhCC----CeEEEEEECCCCh--hhhc---CCc-ccc-EEEEEeCCeEEEEe-eCC-CHHH
Q 032967 59 CGVCNQI----LPAFCKLSNNFP----KLSFIYADIDECP--ETTQ---HIR-YTP-TFHFYRDGERVDEM-FGA-GEER 121 (130)
Q Consensus 59 C~~C~~~----~~~~~~l~~~~~----~v~~~~id~~~~~--~~~~---~v~-~~P-t~~~~~~g~~~~~~-~g~-~~~~ 121 (130)
||.|-+. .....++.+... .+++..+-|.=|. +... ++- +-| ...+|+.|+.+.+. ..- -.++
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd~ 350 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVDE 350 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHHH
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHHH
Confidence 5555543 334445555554 4777777775432 2222 444 334 58999999999998 666 7889
Q ss_pred HHHHHhhc
Q 032967 122 LHDRLWLH 129 (130)
Q Consensus 122 l~~~l~~~ 129 (130)
|.+.|+++
T Consensus 351 L~~~I~~~ 358 (359)
T PF04551_consen 351 LIELIEEH 358 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99988876
No 283
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=65.62 E-value=19 Score=19.19 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=29.9
Q ss_pred EEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCC----Chhhhc--CCccccEEEE
Q 032967 52 INYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDE----CPETTQ--HIRYTPTFHF 104 (130)
Q Consensus 52 v~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~----~~~~~~--~v~~~Pt~~~ 104 (130)
..|+.+.|+.|++..-.+....-. .....+|... .+++.. ....+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIP---YEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC---cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 358889999999887666554322 3444455422 223322 4567899874
No 284
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=65.61 E-value=4.7 Score=26.58 Aligned_cols=28 Identities=21% Similarity=0.101 Sum_probs=9.6
Q ss_pred CCccccEEEEEe--CCeEEEEeeCC-CHHHH
Q 032967 95 HIRYTPTFHFYR--DGERVDEMFGA-GEERL 122 (130)
Q Consensus 95 ~v~~~Pt~~~~~--~g~~~~~~~g~-~~~~l 122 (130)
+|+++||++++. +++.-..+.|. +.+.+
T Consensus 144 ~I~~~Ptlvi~~~~~~~~g~~i~g~~~~~~~ 174 (176)
T PF13743_consen 144 GITGFPTLVIFNENNEEYGILIEGYYSYEVY 174 (176)
T ss_dssp T-SSSSEEEEE--------------------
T ss_pred CCCCCCEEEEEeccccccccccccccccccc
Confidence 899999999997 22233345555 44443
No 285
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=65.59 E-value=26 Score=20.69 Aligned_cols=65 Identities=22% Similarity=0.451 Sum_probs=36.1
Q ss_pred CCHhHHhhHH------HH-HHHHhhCC--CeEEEEEECCCChhh------hc----CCccccEEEEEeCCeEEEEeeCC-
Q 032967 58 WCGVCNQILP------AF-CKLSNNFP--KLSFIYADIDECPET------TQ----HIRYTPTFHFYRDGERVDEMFGA- 117 (130)
Q Consensus 58 ~C~~C~~~~~------~~-~~l~~~~~--~v~~~~id~~~~~~~------~~----~v~~~Pt~~~~~~g~~~~~~~g~- 117 (130)
-|..|..+-. -+ ..+.++|+ .+.|-+||+.+.++. +. .-..+|-+++ +|+.+. -|.
T Consensus 8 ~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i--~~eiV~--EGnp 83 (93)
T PF07315_consen 8 ICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVI--NDEIVA--EGNP 83 (93)
T ss_dssp --GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEE--TTEEEE--ESS-
T ss_pred cchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEE--CCEEEe--cCCc
Confidence 4888876522 22 23578898 489999999865543 11 3357897776 888775 466
Q ss_pred CHHHHHHHH
Q 032967 118 GEERLHDRL 126 (130)
Q Consensus 118 ~~~~l~~~l 126 (130)
...++.+++
T Consensus 84 ~LK~I~~~~ 92 (93)
T PF07315_consen 84 QLKDIYEEM 92 (93)
T ss_dssp -HHHHHHHH
T ss_pred cHHHHHHhh
Confidence 666766655
No 286
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=65.56 E-value=45 Score=24.51 Aligned_cols=85 Identities=6% Similarity=-0.025 Sum_probs=53.6
Q ss_pred hcCCCcEEEEEeCCC-----CHhHHhhHHHHHHHHhhCC-------CeEEEEEECCCChhhhc-CCccccEEEEEeCCeE
Q 032967 44 KSSKIPAVINYGASW-----CGVCNQILPAFCKLSNNFP-------KLSFIYADIDECPETTQ-HIRYTPTFHFYRDGER 110 (130)
Q Consensus 44 ~~~~~~~lv~f~s~~-----C~~C~~~~~~~~~l~~~~~-------~v~~~~id~~~~~~~~~-~v~~~Pt~~~~~~g~~ 110 (130)
..+++.+.+...+.- ..+-++++...++.++++. +.+|..+|....-.... .--+.|+++++.....
T Consensus 247 G~sGKLVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~~nqilM~als~P~l~i~Ntsnq 326 (468)
T KOG4277|consen 247 GASGKLVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGNDLANQILMAALSEPHLFIFNTSNQ 326 (468)
T ss_pred CcCCceEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhHHHHHHHHHhhcCCeEEEEecCch
Confidence 457777777776643 4567788888888887764 47887776543222111 3347899888864433
Q ss_pred EEEe--eCC---CHHHHHHHHhh
Q 032967 111 VDEM--FGA---GEERLHDRLWL 128 (130)
Q Consensus 111 ~~~~--~g~---~~~~l~~~l~~ 128 (130)
-..+ ... +.+++.++|++
T Consensus 327 eYfLse~d~qikniedilqFien 349 (468)
T KOG4277|consen 327 EYFLSEDDPQIKNIEDILQFIEN 349 (468)
T ss_pred heeeccCChhhhhHHHHHHHHhc
Confidence 2222 222 67788888875
No 287
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=65.30 E-value=10 Score=22.68 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=33.6
Q ss_pred EeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChh-hhc-CC--ccccEEEE-EeCCe
Q 032967 54 YGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPE-TTQ-HI--RYTPTFHF-YRDGE 109 (130)
Q Consensus 54 f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~-~~~-~v--~~~Pt~~~-~~~g~ 109 (130)
||..+|+-|......+.+... ...+.|+.+.-....+ +.. ++ ....+.++ ..+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR-GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC-CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 799999999999988888732 3368886553333333 222 33 23444444 46776
No 288
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=65.29 E-value=28 Score=21.12 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=37.0
Q ss_pred cCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCC
Q 032967 45 SSKIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDEC 89 (130)
Q Consensus 45 ~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~ 89 (130)
-+++++||.=.|+.|+.-. ....+++|.++|+ ++.++..-|...
T Consensus 19 y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqF 64 (108)
T PF00255_consen 19 YKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQF 64 (108)
T ss_dssp GTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTT
T ss_pred cCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHh
Confidence 4789999999999999888 6678889988887 688988888754
No 289
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=65.11 E-value=42 Score=23.04 Aligned_cols=67 Identities=15% Similarity=0.140 Sum_probs=42.7
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc---CCccccEEEEEeCCeEEE
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ---HIRYTPTFHFYRDGERVD 112 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~---~v~~~Pt~~~~~~g~~~~ 112 (130)
.++..+..=|+++.+.--.|...-..+.+.-.+|.+..+.....++... ++..+|.-.+...|....
T Consensus 3 rGrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~vethgR~et~~l~~gLe~iP~~~i~y~g~~~~ 72 (211)
T PF02702_consen 3 RGRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETHGRPETEALLEGLEVIPRKKIEYRGRTLE 72 (211)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---TT-HHHHHHHCTS-B---EEEEETTEEEE
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCCCcHHHHHHHcCCCcCCCeeEeeCCEecc
Confidence 5677777788999988888877777777666689999999887777665 899999988888886554
No 290
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=64.54 E-value=49 Score=25.05 Aligned_cols=81 Identities=16% Similarity=0.085 Sum_probs=49.9
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc-CCccccEEEEEeCCeEEEEeeCC--CHHHH
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ-HIRYTPTFHFYRDGERVDEMFGA--GEERL 122 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~-~v~~~Pt~~~~~~g~~~~~~~g~--~~~~l 122 (130)
+..+.|-.||+.....-......++.++++.+++.+-.+|..+++-+.+ ++...|- ++-..-.-+.|. ..+.+
T Consensus 341 ~s~~~V~L~Y~~~n~e~~~y~~eLr~~~qkl~~~~lHiiDSs~~g~l~~e~ler~~~----~~~~~sv~fCGP~~m~dsL 416 (438)
T COG4097 341 KSDPPVHLFYCSRNWEEALYAEELRALAQKLPNVVLHIIDSSKDGYLDQEDLERYPD----RPRTRSVFFCGPIKMMDSL 416 (438)
T ss_pred ccCCceEEEEEecCCchhHHHHHHHHHHhcCCCeEEEEecCCCCCccCHHHhhcccc----ccCcceEEEEcCHHHHHHH
Confidence 3455566666655555455566788899989988888899988877665 3322221 011112335666 56777
Q ss_pred HHHHhhcC
Q 032967 123 HDRLWLHS 130 (130)
Q Consensus 123 ~~~l~~~~ 130 (130)
+..+++++
T Consensus 417 ~r~l~~~~ 424 (438)
T COG4097 417 RRDLKKQN 424 (438)
T ss_pred HHHHHHcC
Confidence 77776653
No 291
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=63.79 E-value=27 Score=22.80 Aligned_cols=42 Identities=10% Similarity=0.203 Sum_probs=33.8
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCC--eEEEEEECC
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFPK--LSFIYADID 87 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~--v~~~~id~~ 87 (130)
.++-+.+.|+|+..+-|.-+...++.+++.|.+ |.+-.+++.
T Consensus 126 ~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~ 169 (171)
T PF07700_consen 126 DDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECM 169 (171)
T ss_dssp ETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred CCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 446688999999999999999999999999874 555555543
No 292
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=63.78 E-value=11 Score=23.15 Aligned_cols=51 Identities=12% Similarity=0.193 Sum_probs=32.4
Q ss_pred CCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc-----CCccccEEEEEeCC
Q 032967 58 WCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ-----HIRYTPTFHFYRDG 108 (130)
Q Consensus 58 ~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~-----~v~~~Pt~~~~~~g 108 (130)
.|++|..+.-.+.-.-..-..+.+.+|+..+-+...- .=.+.|++++-.+.
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~ 78 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGA 78 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCC
Confidence 3999988775554332222258888899886554321 44689998886533
No 293
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=63.66 E-value=13 Score=25.29 Aligned_cols=34 Identities=21% Similarity=0.078 Sum_probs=27.1
Q ss_pred CCccccEEEEEeCCeEEEEeeC--C-CHHHHHHHHhh
Q 032967 95 HIRYTPTFHFYRDGERVDEMFG--A-GEERLHDRLWL 128 (130)
Q Consensus 95 ~v~~~Pt~~~~~~g~~~~~~~g--~-~~~~l~~~l~~ 128 (130)
++.++|||++-.||+...--.| . +.+.+..++.+
T Consensus 171 g~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~ 207 (212)
T COG3531 171 GAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQ 207 (212)
T ss_pred ccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHH
Confidence 7899999999999987665566 3 77888877764
No 294
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=62.95 E-value=40 Score=22.07 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=23.2
Q ss_pred EEEEEeCCeEEEEeeCC-CHHHHHHHHhh
Q 032967 101 TFHFYRDGERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 101 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
-|++-++|+.+.|+.-. .++++...|+.
T Consensus 130 KFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~ 158 (162)
T COG0386 130 KFLVDRDGNVVKRFSPKTKPEDIELAIEK 158 (162)
T ss_pred EEEEcCCCcEEEeeCCCCChhhHHHHHHH
Confidence 47777899999999988 88888877764
No 295
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=61.75 E-value=28 Score=19.91 Aligned_cols=56 Identities=16% Similarity=0.272 Sum_probs=32.0
Q ss_pred HHHHHHhhCCCeEEEEEECCCChhhhcCC-ccccEEEEEeCCeEEEEeeCC-CHHHHHHHHhh
Q 032967 68 AFCKLSNNFPKLSFIYADIDECPETTQHI-RYTPTFHFYRDGERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 68 ~~~~l~~~~~~v~~~~id~~~~~~~~~~v-~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
.+.+++..+++... +-+..+.+..++ ..-.++.+|..|+.+- .|. +.+++.+.+++
T Consensus 20 dL~~la~~~~~~~Y---ePe~fpgl~~r~~~p~~t~~IF~sGki~i--tGaks~~~~~~a~~~ 77 (86)
T PF00352_consen 20 DLEELAEELENVEY---EPERFPGLIYRLRNPKATVLIFSSGKIVI--TGAKSEEEAKKAIEK 77 (86)
T ss_dssp -HHHHHHHSTTEEE---ETTTESSEEEEETTTTEEEEEETTSEEEE--EEESSHHHHHHHHHH
T ss_pred CHHHHHhhccCcEE---eeccCCeEEEeecCCcEEEEEEcCCEEEE--EecCCHHHHHHHHHH
Confidence 35566666544422 433333333322 2346899999998763 676 77777766553
No 296
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=56.45 E-value=16 Score=20.81 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=19.3
Q ss_pred cccEEEEEe-CCeEE--EEeeCCCHHHHHHHHhhc
Q 032967 98 YTPTFHFYR-DGERV--DEMFGAGEERLHDRLWLH 129 (130)
Q Consensus 98 ~~Pt~~~~~-~g~~~--~~~~g~~~~~l~~~l~~~ 129 (130)
.-|+++++. +|+.+ ..+.+++.+++.++|.+.
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~k 75 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEK 75 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHh
Confidence 447888885 66644 455566999999999864
No 297
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=54.05 E-value=34 Score=18.44 Aligned_cols=50 Identities=16% Similarity=0.307 Sum_probs=29.3
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCC----Chhhhc--CCccccEEE
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDE----CPETTQ--HIRYTPTFH 103 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~----~~~~~~--~v~~~Pt~~ 103 (130)
+-.|+.+.|+.|++..-.+....-. +....++... .+++.. ....+|++.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~ 57 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVD---YELVPVDLTKGEHKSPEHLARNPFGQIPALE 57 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCC---cEEEEeCccccccCCHHHHhhCCCCCCCEEE
Confidence 4456677799999887666554322 3444444421 233333 567899875
No 298
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=52.90 E-value=70 Score=22.27 Aligned_cols=72 Identities=21% Similarity=0.311 Sum_probs=42.8
Q ss_pred HHHHHHHhhcCCCcEEEEEeC---CCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc---CCccccEE-EEEeCC
Q 032967 36 HKDILLQIKSSKIPAVINYGA---SWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ---HIRYTPTF-HFYRDG 108 (130)
Q Consensus 36 ~~~~i~~~~~~~~~~lv~f~s---~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~---~v~~~Pt~-~~~~~g 108 (130)
.+..+...-+.+.+++.+=.+ |.|+..+++...++.. ++.+...|+-.+.++.+ ....+||| .+|-+|
T Consensus 128 ~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~-----nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~G 202 (227)
T KOG0911|consen 128 LDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSH-----NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKG 202 (227)
T ss_pred HHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHc-----CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECC
Confidence 444444322233334433344 4577666666555443 67788899999999887 45566763 455688
Q ss_pred eEEE
Q 032967 109 ERVD 112 (130)
Q Consensus 109 ~~~~ 112 (130)
+.+.
T Consensus 203 EFiG 206 (227)
T KOG0911|consen 203 EFIG 206 (227)
T ss_pred Eecc
Confidence 7553
No 299
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=52.08 E-value=57 Score=21.78 Aligned_cols=59 Identities=8% Similarity=0.032 Sum_probs=35.5
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCC-hhhhc--CCccccEEEEEeCCe
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDEC-PETTQ--HIRYTPTFHFYRDGE 109 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~-~~~~~--~v~~~Pt~~~~~~g~ 109 (130)
++...+-.|+.+.|+.|++..=.+.+..- .+....+|.... ++... ....+|++. .+|.
T Consensus 6 ~~~~~~~Ly~~~~s~~~~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~nP~g~VPvL~--~~g~ 67 (211)
T PRK09481 6 NKRSVMTLFSGPTDIYSHQVRIVLAEKGV---SVEIEQVEKDNLPQDLIDLNPYQSVPTLV--DREL 67 (211)
T ss_pred CCCCeeEEeCCCCChhHHHHHHHHHHCCC---CCEEEeCCcccCCHHHHHhCCCCCCCEEE--ECCE
Confidence 44455666777889999998765555432 344455555432 23333 456889986 3553
No 300
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=50.52 E-value=39 Score=21.95 Aligned_cols=32 Identities=6% Similarity=-0.141 Sum_probs=25.5
Q ss_pred EEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEE
Q 032967 53 NYGASWCGVCNQILPAFCKLSNNFP-KLSFIYA 84 (130)
Q Consensus 53 ~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~i 84 (130)
+|+..-||.|-...+.++++...++ .+.+.-+
T Consensus 3 ~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 3 FYFDFSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 5778899999999999999998886 4554433
No 301
>PF06289 FlbD: Flagellar protein (FlbD); InterPro: IPR009384 This family consists of several bacterial FlbD flagellar proteins. The exact function of this family is unknown [].
Probab=50.27 E-value=26 Score=18.95 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=25.1
Q ss_pred hhhhcCCcccc-EEEEEeCCeEEEEeeCC-CHHHHHHHHhhc
Q 032967 90 PETTQHIRYTP-TFHFYRDGERVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 90 ~~~~~~v~~~P-t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 129 (130)
+.+-..+...| |.+..-+|+.. .-. +.+++.+.+..+
T Consensus 16 ~d~IE~ie~~PDTvItL~~G~k~---vV~Es~~eVi~ki~~y 54 (60)
T PF06289_consen 16 PDLIETIEETPDTVITLTNGKKY---VVKESVEEVIEKIIEY 54 (60)
T ss_pred hHHEEEEEEcCCeEEEEeCCCEE---EEECCHHHHHHHHHHH
Confidence 33344677889 88888899644 334 788887777654
No 302
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=49.89 E-value=40 Score=18.04 Aligned_cols=55 Identities=9% Similarity=0.003 Sum_probs=29.8
Q ss_pred EEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCC-Chhhhc--CCccccEEEEEeCCe
Q 032967 53 NYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDE-CPETTQ--HIRYTPTFHFYRDGE 109 (130)
Q Consensus 53 ~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~-~~~~~~--~v~~~Pt~~~~~~g~ 109 (130)
.|+.+.|+.|.+..-.+....... .+....+|... .+++.. ....+|++.. .+|.
T Consensus 3 Ly~~~~s~~~~~~~~~l~~~~~~i-~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~-~~g~ 60 (73)
T cd03049 3 LLYSPTSPYVRKVRVAAHETGLGD-DVELVLVNPWSDDESLLAVNPLGKIPALVL-DDGE 60 (73)
T ss_pred EecCCCCcHHHHHHHHHHHhCCCC-CcEEEEcCcccCChHHHHhCCCCCCCEEEE-CCCC
Confidence 577888999998765554421111 24444454322 233333 5667898764 2443
No 303
>PF09499 RE_ApaLI: ApaLI-like restriction endonuclease; InterPro: IPR019036 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes R.ApaLI and R.XbaI restriction endonucleases. ApaLI recognises and cleaves the sequence GTGCAC.
Probab=49.57 E-value=64 Score=21.62 Aligned_cols=45 Identities=11% Similarity=0.082 Sum_probs=32.3
Q ss_pred eccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhh
Q 032967 29 TASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNN 75 (130)
Q Consensus 29 ~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~ 75 (130)
++.....+.+.+. .++-+|+.|+||-|.=..-.+....++.+-..
T Consensus 127 hi~kEhtrikvi~--~aGy~PIrimf~~P~r~~~~~iq~~L~tlY~g 171 (191)
T PF09499_consen 127 HITKEHTRIKVIK--SAGYKPIRIMFYYPNREQAIRIQTTLKTLYNG 171 (191)
T ss_pred hhhhHHHHHHHHH--HCCCcceEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 4445567788887 56779999999999876666666666666443
No 304
>PTZ00151 translationally controlled tumor-like protein; Provisional
Probab=48.54 E-value=38 Score=22.53 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=24.7
Q ss_pred HHHhhCCCeEEEEE---ECCCChhhhc--CCccccEEEEEeCCeE
Q 032967 71 KLSNNFPKLSFIYA---DIDECPETTQ--HIRYTPTFHFYRDGER 110 (130)
Q Consensus 71 ~l~~~~~~v~~~~i---d~~~~~~~~~--~v~~~Pt~~~~~~g~~ 110 (130)
.+...|++..|+.- |.+.--.+.. .=..+|.+++|++|-.
T Consensus 124 ~il~~Fkd~qFf~GeSmd~dgmv~l~~Yredg~tP~~~f~KdGL~ 168 (172)
T PTZ00151 124 HILENFDDFEFYLGESLDCEAGLIYGYYKGEELAPRFVYIKDGLK 168 (172)
T ss_pred HHHHhcCCceEeecCCCCCCccEEEEeecCCCcceEEEEEcccce
Confidence 44556778888853 3333333333 2236899999999943
No 305
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=48.50 E-value=1.1e+02 Score=22.88 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=52.9
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC---CeEEEEEECCCChhhhc--------CCccccEEEEEe--CCeEEE
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFP---KLSFIYADIDECPETTQ--------HIRYTPTFHFYR--DGERVD 112 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~---~v~~~~id~~~~~~~~~--------~v~~~Pt~~~~~--~g~~~~ 112 (130)
-++..+|.|-...-+...++...+.++|+... ++.++-||=+..|-+.. .+. -|.+=+.. +...++
T Consensus 267 ~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl~-~PqIGvVnvtdadsvW 345 (383)
T PF01216_consen 267 IDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDLS-RPQIGVVNVTDADSVW 345 (383)
T ss_dssp SSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-TT-S-EEEEEETTTSEEEE
T ss_pred CCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCcccc-CCceeEEeccccccch
Confidence 34567888999999999999999999998865 69999999999987753 343 48877763 333333
Q ss_pred -EeeC---C-CHHHHHHHHhh
Q 032967 113 -EMFG---A-GEERLHDRLWL 128 (130)
Q Consensus 113 -~~~g---~-~~~~l~~~l~~ 128 (130)
...+ . +.++|..||..
T Consensus 346 ~dm~d~~d~pt~~~LedWieD 366 (383)
T PF01216_consen 346 MDMDDDDDLPTAEELEDWIED 366 (383)
T ss_dssp C-STTTSS---HHHHHHHHHH
T ss_pred hccCCcccCCcHHHHHHHHHH
Confidence 3332 2 78899999864
No 306
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=48.24 E-value=1.1e+02 Score=22.65 Aligned_cols=91 Identities=10% Similarity=0.108 Sum_probs=51.0
Q ss_pred eeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEE--ECCCChhhhcCCccccEEE
Q 032967 27 LKTASSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYA--DIDECPETTQHIRYTPTFH 103 (130)
Q Consensus 27 ~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~i--d~~~~~~~~~~v~~~Pt~~ 103 (130)
+.+..+..++..... .+.+.++.+|.+..-+.-..+. +++..+. +..|..- |... .. .-.+.+ ++
T Consensus 110 i~Ef~sl~~l~n~~~---p~K~~vIgyF~~kdspey~~~~----kva~~lr~dc~f~V~~gD~~~--~~--~~~~~~-~~ 177 (375)
T KOG0912|consen 110 INEFESLDQLQNLDI---PSKRTVIGYFPSKDSPEYDNLR----KVASLLRDDCVFLVGFGDLLK--PH--EPPGKN-IL 177 (375)
T ss_pred HHHHHhHHHHHhhhc---cccceEEEEeccCCCchHHHHH----HHHHHHhhccEEEeecccccc--CC--CCCCCc-eE
Confidence 445556666666653 4667788888877777755544 5554444 3333321 2211 10 112333 44
Q ss_pred EEeCCeEEE--EeeCC--CHHHHHHHHhhc
Q 032967 104 FYRDGERVD--EMFGA--GEERLHDRLWLH 129 (130)
Q Consensus 104 ~~~~g~~~~--~~~g~--~~~~l~~~l~~~ 129 (130)
++..+.... .|.|. +.+++.+||.+-
T Consensus 178 ~f~pd~~~~~~~f~G~~~nf~el~~Wi~dK 207 (375)
T KOG0912|consen 178 VFDPDHSEPNHEFLGSMTNFDELKQWIQDK 207 (375)
T ss_pred EeCCCcCCcCcccccccccHHHHHHHHHhc
Confidence 444443222 58888 899999999864
No 307
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=46.32 E-value=77 Score=20.25 Aligned_cols=65 Identities=9% Similarity=0.182 Sum_probs=41.4
Q ss_pred cCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhc--CCccc-c-EEEEEeCCeE
Q 032967 45 SSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQ--HIRYT-P-TFHFYRDGER 110 (130)
Q Consensus 45 ~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~--~v~~~-P-t~~~~~~g~~ 110 (130)
.-+++-.|.+|.-.|+-|-.....+.+.... ..+.|..+..+.-..+.. ++... + ++++.++|..
T Consensus 4 ~~~~p~~vvlyDG~C~lC~~~vrfLi~~D~~-~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~ 72 (137)
T COG3011 4 QMKKPDLVVLYDGVCPLCDGWVRFLIRRDQG-GRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQL 72 (137)
T ss_pred CCCCCCEEEEECCcchhHHHHHHHHHHhccC-CcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCce
Confidence 3567788889999999999976666555322 168888777665444433 32221 3 5666677744
No 308
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=46.29 E-value=19 Score=16.58 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=9.9
Q ss_pred eCCCHHHHHHHHhhc
Q 032967 115 FGAGEERLHDRLWLH 129 (130)
Q Consensus 115 ~g~~~~~l~~~l~~~ 129 (130)
.|.+.+++++||..+
T Consensus 15 ~Gls~eeir~FL~~~ 29 (30)
T PF08671_consen 15 SGLSKEEIREFLEFN 29 (30)
T ss_dssp TT--HHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhC
Confidence 466889999988753
No 309
>COG3411 Ferredoxin [Energy production and conversion]
Probab=44.94 E-value=53 Score=18.02 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=18.9
Q ss_pred cccEEEEEeCCeEEEEeeCCCHHHHHHHHhhc
Q 032967 98 YTPTFHFYRDGERVDEMFGAGEERLHDRLWLH 129 (130)
Q Consensus 98 ~~Pt~~~~~~g~~~~~~~g~~~~~l~~~l~~~ 129 (130)
.=|++++|.+| .=|.+.++++..+.++.|
T Consensus 16 ~gPvl~vYpeg---vWY~~V~p~~a~rIv~~h 44 (64)
T COG3411 16 DGPVLVVYPEG---VWYTRVDPEDARRIVQSH 44 (64)
T ss_pred cCCEEEEecCC---eeEeccCHHHHHHHHHHH
Confidence 34999999999 223344666666666543
No 310
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=43.37 E-value=77 Score=19.39 Aligned_cols=83 Identities=12% Similarity=-0.057 Sum_probs=49.9
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCCCh------------hhhc--C--CccccEEEEEeC
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDECP------------ETTQ--H--IRYTPTFHFYRD 107 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~~~------------~~~~--~--v~~~Pt~~~~~~ 107 (130)
+.+++||.==++.-+.-+.....+.+-...+. ++.++.+--+... .+.. + -.+.-.+++-++
T Consensus 9 ~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKD 88 (118)
T PF13778_consen 9 KNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKD 88 (118)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCC
Confidence 44444433224555666666666666433443 6777766333222 2222 3 234456777799
Q ss_pred CeEEEEeeCC-CHHHHHHHHhh
Q 032967 108 GERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 108 g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
|.+..++.+. +.++|-+.|..
T Consensus 89 G~vK~r~~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 89 GGVKLRWPEPIDPEELFDTIDA 110 (118)
T ss_pred CcEEEecCCCCCHHHHHHHHhC
Confidence 9998898888 99999988764
No 311
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=43.24 E-value=26 Score=27.80 Aligned_cols=63 Identities=19% Similarity=0.271 Sum_probs=41.6
Q ss_pred hcCCCcEEEEEeCCCCHhHHhhHH-HH--HHHHhhCC-CeEEEEEECCCChhhhc----------CCccccEEEEEe
Q 032967 44 KSSKIPAVINYGASWCGVCNQILP-AF--CKLSNNFP-KLSFIYADIDECPETTQ----------HIRYTPTFHFYR 106 (130)
Q Consensus 44 ~~~~~~~lv~f~s~~C~~C~~~~~-~~--~~l~~~~~-~v~~~~id~~~~~~~~~----------~v~~~Pt~~~~~ 106 (130)
...++|+++...-+.|.-|..|.. .| +++++.+. +..-++||-++.|++-+ +-.|+|.-+++.
T Consensus 109 r~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWPmsV~LT 185 (786)
T KOG2244|consen 109 RAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWPMSVFLT 185 (786)
T ss_pred HhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCceeEEeC
Confidence 469999999999999999997753 33 22444442 34444566666665422 556888766664
No 312
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=42.23 E-value=9.2 Score=24.45 Aligned_cols=13 Identities=38% Similarity=0.828 Sum_probs=11.1
Q ss_pred CCHhHHhhHHHHH
Q 032967 58 WCGVCNQILPAFC 70 (130)
Q Consensus 58 ~C~~C~~~~~~~~ 70 (130)
.|++|++..|.+-
T Consensus 11 ~CPhCRQ~ipALt 23 (163)
T TIGR02652 11 RCPHCRQNIPALT 23 (163)
T ss_pred cCchhhcccchhe
Confidence 6999999988774
No 313
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=41.81 E-value=9 Score=24.43 Aligned_cols=13 Identities=38% Similarity=0.856 Sum_probs=11.1
Q ss_pred CCHhHHhhHHHHH
Q 032967 58 WCGVCNQILPAFC 70 (130)
Q Consensus 58 ~C~~C~~~~~~~~ 70 (130)
.|++|++..|.+-
T Consensus 8 ~CPhCRq~ipALt 20 (161)
T PF09654_consen 8 QCPHCRQTIPALT 20 (161)
T ss_pred cCchhhcccchhe
Confidence 6999999988774
No 314
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=40.45 E-value=52 Score=21.59 Aligned_cols=25 Identities=12% Similarity=0.070 Sum_probs=22.1
Q ss_pred EEeCCCCHhHHhhHHHHHHHHhhCC
Q 032967 53 NYGASWCGVCNQILPAFCKLSNNFP 77 (130)
Q Consensus 53 ~f~s~~C~~C~~~~~~~~~l~~~~~ 77 (130)
.|+..-||.|-...+.+.++.+.++
T Consensus 3 ~~~D~~cP~cyl~~~~l~~~~~~~~ 27 (201)
T cd03024 3 IWSDVVCPWCYIGKRRLEKALAELG 27 (201)
T ss_pred EEecCcCccHHHHHHHHHHHHHhCC
Confidence 5777889999999999999999984
No 315
>PRK13669 hypothetical protein; Provisional
Probab=39.47 E-value=75 Score=18.18 Aligned_cols=53 Identities=23% Similarity=0.184 Sum_probs=31.2
Q ss_pred HHHHHHHhhCCCeEEEEEECCCChhhhcCCccccEEEEEeCCeEEEEeeCCCHHHHHHHHhh
Q 032967 67 PAFCKLSNNFPKLSFIYADIDECPETTQHIRYTPTFHFYRDGERVDEMFGAGEERLHDRLWL 128 (130)
Q Consensus 67 ~~~~~l~~~~~~v~~~~id~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~l~~ 128 (130)
..++.+ +++|++.+...+|-.+=..+ ..-|- . +=||+.+ .|.++|+|.+.|.+
T Consensus 18 ~~~~~L-e~dP~~dVie~gCls~CG~C---~~~~F-A-lVng~~V---~a~t~eeL~~kI~~ 70 (78)
T PRK13669 18 AAFEKL-EKDPNLDVLEYGCLGYCGIC---SEGLF-A-LVNGEVV---EGETPEELVENIYA 70 (78)
T ss_pred HHHHHH-HhCCCceEEEcchhhhCcCc---ccCce-E-EECCeEe---ecCCHHHHHHHHHH
Confidence 345555 56789988888765322212 22232 2 2377655 46688888887765
No 316
>PHA02131 hypothetical protein
Probab=39.36 E-value=62 Score=17.21 Aligned_cols=27 Identities=7% Similarity=0.234 Sum_probs=19.7
Q ss_pred ccccEEEEEeCCeEEEEeeCCCHHHHH
Q 032967 97 RYTPTFHFYRDGERVDEMFGAGEERLH 123 (130)
Q Consensus 97 ~~~Pt~~~~~~g~~~~~~~g~~~~~l~ 123 (130)
.++.+.++|++|+.+.-.+..+..+++
T Consensus 27 ~g~~c~imfk~~~v~dctfk~dtaqfr 53 (70)
T PHA02131 27 FGISCWIMFKNDQVIDCTFKNDTAQFR 53 (70)
T ss_pred cceEEEEEEcCCCEEEeeecCcHHHHh
Confidence 577899999999988765555444444
No 317
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=38.60 E-value=50 Score=21.96 Aligned_cols=28 Identities=11% Similarity=0.233 Sum_probs=22.6
Q ss_pred eccChHHHHHHHHHhhcCCCcEEEEEeCCC
Q 032967 29 TASSDQNHKDILLQIKSSKIPAVINYGASW 58 (130)
Q Consensus 29 ~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~ 58 (130)
+..+.+++-++|. .....|+||+|=...
T Consensus 36 T~lsG~elV~lIk--~a~~DPV~VMfDD~G 63 (180)
T PF14097_consen 36 TPLSGEELVELIK--QAPHDPVLVMFDDKG 63 (180)
T ss_pred CcCCHHHHHHHHH--hCCCCCEEEEEeCCC
Confidence 3447899999998 568899999997654
No 318
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=37.97 E-value=28 Score=18.86 Aligned_cols=14 Identities=36% Similarity=1.042 Sum_probs=11.3
Q ss_pred ccEEEEEeCCeEEE
Q 032967 99 TPTFHFYRDGERVD 112 (130)
Q Consensus 99 ~Pt~~~~~~g~~~~ 112 (130)
.|++.+|++|+.+.
T Consensus 12 ~P~v~W~kdg~~l~ 25 (67)
T cd05863 12 PPEFQWYKDGKLIS 25 (67)
T ss_pred CCEEEEEECCEECc
Confidence 46899999998764
No 319
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=37.60 E-value=63 Score=16.73 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=21.4
Q ss_pred EeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCC
Q 032967 54 YGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDE 88 (130)
Q Consensus 54 f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~ 88 (130)
...=.|+.|.. .+++.....+++.-+.+|...
T Consensus 4 v~~m~C~~C~~---~v~~~l~~~~GV~~v~vd~~~ 35 (62)
T PF00403_consen 4 VPGMTCEGCAK---KVEKALSKLPGVKSVKVDLET 35 (62)
T ss_dssp EESTTSHHHHH---HHHHHHHTSTTEEEEEEETTT
T ss_pred ECCcccHHHHH---HHHHHHhcCCCCcEEEEECCC
Confidence 34457888876 444555556788888887764
No 320
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=37.43 E-value=24 Score=19.98 Aligned_cols=14 Identities=21% Similarity=0.800 Sum_probs=11.3
Q ss_pred ccEEEEEeCCeEEE
Q 032967 99 TPTFHFYRDGERVD 112 (130)
Q Consensus 99 ~Pt~~~~~~g~~~~ 112 (130)
.|++.+|++|+.+.
T Consensus 12 ~Pti~W~kng~~l~ 25 (79)
T cd05855 12 KPTLQWFHEGAILN 25 (79)
T ss_pred CCceEEEECCEECC
Confidence 46899999998663
No 321
>COG1582 FlgEa Uncharacterized protein, possibly involved in motility [Cell motility and secretion]
Probab=36.58 E-value=76 Score=17.42 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=23.2
Q ss_pred hcCCcccc-EEEEEeCCeEEEEeeCCCHHHHHHHHhhc
Q 032967 93 TQHIRYTP-TFHFYRDGERVDEMFGAGEERLHDRLWLH 129 (130)
Q Consensus 93 ~~~v~~~P-t~~~~~~g~~~~~~~g~~~~~l~~~l~~~ 129 (130)
...+..+| |.+..-+|+... +.-+.+++.+.+..+
T Consensus 19 IE~ie~~PDttItLinGkkyv--VkEsveEVi~kI~~y 54 (67)
T COG1582 19 IETIEAFPDTTITLINGKKYV--VKESVEEVINKIIEY 54 (67)
T ss_pred hhhhhccCCcEEEEEcCcEEE--EcccHHHHHHHHHHH
Confidence 33788899 777778886432 233777777776543
No 322
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=36.22 E-value=53 Score=22.09 Aligned_cols=26 Identities=19% Similarity=0.452 Sum_probs=15.8
Q ss_pred cChHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 032967 31 SSDQNHKDILLQIKSSKIPAVINYGASWC 59 (130)
Q Consensus 31 ~~~~~~~~~i~~~~~~~~~~lv~f~s~~C 59 (130)
.+..++.+.+. ..++|+|+.|.+-|-
T Consensus 119 is~~~lr~~l~---~~~~P~LllFGTGwG 144 (185)
T PF09936_consen 119 ISYAELRRMLE---EEDRPVLLLFGTGWG 144 (185)
T ss_dssp B-HHHHHHHHH---H--S-EEEEE--TT-
T ss_pred cCHHHHHHHHh---ccCCeEEEEecCCCC
Confidence 46778888884 689999999999994
No 323
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=36.00 E-value=1.5e+02 Score=20.63 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECC
Q 032967 32 SDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADID 87 (130)
Q Consensus 32 ~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~ 87 (130)
+..++.+.+..+.+++ +-+|.. .-..+.+.+.+++++||++.|+.+|..
T Consensus 42 ~~~~~~~~i~~~~~~g-~dlIi~------~g~~~~~~~~~vA~~~p~~~F~~~d~~ 90 (258)
T cd06353 42 EGADAERVLRELAAQG-YDLIFG------TSFGFMDAALKVAKEYPDVKFEHCSGY 90 (258)
T ss_pred chHhHHHHHHHHHHcC-CCEEEE------CchhhhHHHHHHHHHCCCCEEEECCCC
Confidence 4566666666544444 333333 445677888999999999999988764
No 324
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=35.01 E-value=77 Score=16.97 Aligned_cols=50 Identities=10% Similarity=0.022 Sum_probs=29.0
Q ss_pred EEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCC-Chhhhc--C-CccccEEEE
Q 032967 52 INYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDE-CPETTQ--H-IRYTPTFHF 104 (130)
Q Consensus 52 v~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~-~~~~~~--~-v~~~Pt~~~ 104 (130)
..|+.+.|+.|++..-.+....-. .....++... .++... . ...+|++..
T Consensus 2 ~Ly~~~~sp~~~~v~~~l~~~gl~---~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~ 55 (74)
T cd03058 2 KLLGAWASPFVLRVRIALALKGVP---YEYVEEDLGNKSELLLASNPVHKKIPVLLH 55 (74)
T ss_pred EEEECCCCchHHHHHHHHHHcCCC---CEEEEeCcccCCHHHHHhCCCCCCCCEEEE
Confidence 356778899999987666554333 3333444432 233323 3 368998863
No 325
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=34.75 E-value=74 Score=21.42 Aligned_cols=31 Identities=23% Similarity=0.585 Sum_probs=21.8
Q ss_pred CHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhh
Q 032967 59 CGVCNQILPAFCKLSNNFPKLSFIYADIDECPET 92 (130)
Q Consensus 59 C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~ 92 (130)
|+.|..+ |.++++.-+++.++..|-..+..+
T Consensus 157 CGaC~ew---L~KIAe~np~f~v~mFd~t~c~~v 187 (193)
T PF14421_consen 157 CGACKEW---LRKIAEANPDFRVYMFDDTRCRNV 187 (193)
T ss_pred chHHHHH---HHHHHHhCCCeEEEEecCCCcceE
Confidence 8888775 456666677888888877655443
No 326
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=34.54 E-value=1.1e+02 Score=20.45 Aligned_cols=29 Identities=10% Similarity=0.021 Sum_probs=21.7
Q ss_pred eccChHHHHHHHHHhhcCCCcEEEEEeCC
Q 032967 29 TASSDQNHKDILLQIKSSKIPAVINYGAS 57 (130)
Q Consensus 29 ~i~~~~~~~~~i~~~~~~~~~~lv~f~s~ 57 (130)
.+.+.+++.+.+..+...++|.||.+..+
T Consensus 156 ~v~~~~el~~al~~al~~~gp~vIev~~~ 184 (193)
T cd03375 156 FSGDIKQLKEIIKKAIQHKGFSFVEVLSP 184 (193)
T ss_pred ecCCHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 46677888877777777788888888754
No 327
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=34.39 E-value=52 Score=22.49 Aligned_cols=22 Identities=14% Similarity=0.383 Sum_probs=16.8
Q ss_pred cChHHHHHHHHHhhcCCCcEEEEEeC
Q 032967 31 SSDQNHKDILLQIKSSKIPAVINYGA 56 (130)
Q Consensus 31 ~~~~~~~~~i~~~~~~~~~~lv~f~s 56 (130)
.+.++|+++.. .++|++..|++
T Consensus 87 lsd~~Fd~lFT----~DkPViFafHG 108 (203)
T PF09363_consen 87 LSDEEFDALFT----KDKPVIFAFHG 108 (203)
T ss_dssp --HHHHHHHH-----SSS-EEEEESS
T ss_pred CCHHHHHHhcC----CCCCEEEEcCC
Confidence 47899999995 99999999986
No 328
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=34.10 E-value=42 Score=15.96 Aligned_cols=13 Identities=23% Similarity=0.292 Sum_probs=9.3
Q ss_pred CHHHHHHHHhhcC
Q 032967 118 GEERLHDRLWLHS 130 (130)
Q Consensus 118 ~~~~l~~~l~~~~ 130 (130)
+.++|++||..++
T Consensus 5 s~~~L~~wL~~~g 17 (38)
T PF10281_consen 5 SDSDLKSWLKSHG 17 (38)
T ss_pred CHHHHHHHHHHcC
Confidence 6677888877653
No 329
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=34.04 E-value=1.5e+02 Score=21.73 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=17.9
Q ss_pred CcEEEEEeCCCCHhHHhhHHHHH
Q 032967 48 IPAVINYGASWCGVCNQILPAFC 70 (130)
Q Consensus 48 ~~~lv~f~s~~C~~C~~~~~~~~ 70 (130)
..-|+.|--..||.|-..+..+.
T Consensus 88 ~L~l~LyQyetCPFCcKVrAFLD 110 (370)
T KOG3029|consen 88 PLDLVLYQYETCPFCCKVRAFLD 110 (370)
T ss_pred CceEEEEeeccCchHHHHHHHHh
Confidence 34688888899999998876553
No 330
>PHA02096 hypothetical protein
Probab=33.81 E-value=84 Score=18.09 Aligned_cols=45 Identities=13% Similarity=0.112 Sum_probs=27.7
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhcCCccccEEEEE
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQHIRYTPTFHFY 105 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~~v~~~Pt~~~~ 105 (130)
=|.|+.+|-..=..+...=+.+++-+++.+++ ..++.+.||++-.
T Consensus 28 gv~fh~swe~a~~~~~~ak~~i~eylkgt~vi----------kkrlfg~ptiv~i 72 (103)
T PHA02096 28 GVMFHDSWEEADVSLKNAKKSIEEYLKGTTVI----------KKRLFGPPTIVSV 72 (103)
T ss_pred ceEEeccHHHhhhHHHHHHHHHHHHhcccchh----------hhhhcCCCeEEEe
Confidence 36799999766556655555566555543332 2266777887654
No 331
>PF11317 DUF3119: Protein of unknown function (DUF3119); InterPro: IPR021467 This family of proteins has no known function.
Probab=33.80 E-value=93 Score=19.29 Aligned_cols=33 Identities=9% Similarity=0.201 Sum_probs=27.8
Q ss_pred ccccEEEEEeCCeEEEEeeCC-CHHHHHHHHhhc
Q 032967 97 RYTPTFHFYRDGERVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 97 ~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 129 (130)
.++|.++.|+..+.++-+.=. +..+|++.+.+.
T Consensus 81 p~~PiL~YFkE~qsiHFlPiiFd~~~L~~~l~~r 114 (116)
T PF11317_consen 81 PGFPILFYFKETQSIHFLPIIFDPKQLREQLEER 114 (116)
T ss_pred CCCCEEEEEecCCcceeeeeecCHHHHHHHHHHh
Confidence 478999999999888888777 999999888764
No 332
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.69 E-value=67 Score=20.97 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=21.4
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEEeCCCCHh
Q 032967 32 SDQNHKDILLQIKSSKIPAVINYGASWCGV 61 (130)
Q Consensus 32 ~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~ 61 (130)
+..++...+. +.++|+++.|.+-|--+
T Consensus 121 sy~~lr~~I~---e~dkp~LilfGTGwGlp 147 (190)
T COG4752 121 SYSWLRNEIQ---ERDKPWLILFGTGWGLP 147 (190)
T ss_pred cHHHHHHHHh---hcCCcEEEEecCCCCCC
Confidence 5566777774 79999999999999644
No 333
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=33.54 E-value=2e+02 Score=21.36 Aligned_cols=80 Identities=4% Similarity=-0.095 Sum_probs=49.7
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEECCCChhh--hcCCccccEEEEEeCCeEEEEeeCC-CHHH
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADIDECPET--TQHIRYTPTFHFYRDGERVDEMFGA-GEER 121 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~~~~~~~--~~~v~~~Pt~~~~~~g~~~~~~~g~-~~~~ 121 (130)
.+.|+| .++......-..+...+.+++++.. .++. .+.-...+.- ...-.++||..+--.-+-.+...+. +.++
T Consensus 249 g~Gp~i-~~~D~~~i~~~~l~~~l~~~A~~~~I~~Q~-~~~~gGtDa~~~~~~~~Gvpt~~i~ip~Ry~Hs~~e~i~~~D 326 (350)
T TIGR03107 249 GEGTLL-RFFDPGHIMLPRMKDFLLTTAEEAGIKYQY-YVAKGGTDAGAAHLKNSGVPSTTIGVCARYIHSHQTLYSIDD 326 (350)
T ss_pred CCCceE-EEecCCCCCCHHHHHHHHHHHHHcCCCcEE-ecCCCCchHHHHHHhCCCCcEEEEccCcccccChhheeeHHH
Confidence 556666 4666777888899999999999985 4444 2211112211 1244699998876555555555566 6666
Q ss_pred HHHHHh
Q 032967 122 LHDRLW 127 (130)
Q Consensus 122 l~~~l~ 127 (130)
+.+.++
T Consensus 327 ~~~~~~ 332 (350)
T TIGR03107 327 FLAAQA 332 (350)
T ss_pred HHHHHH
Confidence 665543
No 334
>PLN00062 TATA-box-binding protein; Provisional
Probab=33.05 E-value=1.5e+02 Score=19.77 Aligned_cols=55 Identities=16% Similarity=0.084 Sum_probs=31.4
Q ss_pred HHHHHhhCCCeEEEEEECCCChhhhcCCc-cccEEEEEeCCeEEEEeeCC-CHHHHHHHHhh
Q 032967 69 FCKLSNNFPKLSFIYADIDECPETTQHIR-YTPTFHFYRDGERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 69 ~~~l~~~~~~v~~~~id~~~~~~~~~~v~-~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
+++++..+++ ...+=+.+|.+..++. --.++.+|..|+.+ ..|. +.++++..+++
T Consensus 19 L~~la~~~~n---~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiv--iTGaks~e~a~~a~~~ 75 (179)
T PLN00062 19 LKKIALQARN---AEYNPKRFAAVIMRIREPKTTALIFASGKMV--CTGAKSEHDSKLAARK 75 (179)
T ss_pred HHHHHhhCCC---CEECCccCcEEEEEeCCCcEEEEEECCCeEE--EEecCCHHHHHHHHHH
Confidence 4555544433 2333333444433322 23479999999876 4677 88877766543
No 335
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=32.90 E-value=1.1e+02 Score=17.96 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=25.7
Q ss_pred CCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChh-hhc--CCccccEEE
Q 032967 57 SWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPE-TTQ--HIRYTPTFH 103 (130)
Q Consensus 57 ~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~-~~~--~v~~~Pt~~ 103 (130)
.+|+.|++.+=.+....- ...+..+|....++ +.. ....+|++.
T Consensus 20 g~cpf~~rvrl~L~eKgi---~ye~~~vd~~~~p~~~~~~nP~g~vPvL~ 66 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGV---VFNVTTVDMKRKPEDLKDLAPGTQPPFLL 66 (91)
T ss_pred CCChhHHHHHHHHHHCCC---ceEEEEeCCCCCCHHHHHhCCCCCCCEEE
Confidence 578899887654443311 34555666655443 333 556899765
No 336
>PRK00394 transcription factor; Reviewed
Probab=32.74 E-value=1.5e+02 Score=19.71 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=20.4
Q ss_pred cEEEEEeCCeEEEEeeCC-CHHHHHHHHhh
Q 032967 100 PTFHFYRDGERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 100 Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
.++++|..|+.+ ..|. +.+++...+++
T Consensus 140 ~~~lIF~SGKvv--itGaks~~~~~~a~~~ 167 (179)
T PRK00394 140 VVVLLFGSGKLV--ITGAKSEEDAEKAVEK 167 (179)
T ss_pred EEEEEEcCCEEE--EEecCCHHHHHHHHHH
Confidence 378889999876 4788 88888776653
No 337
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=31.74 E-value=1e+02 Score=20.38 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=20.2
Q ss_pred EEEEEeCCeEEEEeeCC-CHHHHHHHHhh
Q 032967 101 TFHFYRDGERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 101 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
++++|..|+.+ ..|. +.++++..+++
T Consensus 140 ~~lIF~SGKvv--itGaks~~~~~~a~~~ 166 (174)
T cd04518 140 VLLLFSSGKMV--ITGAKSEEDAKRAVEK 166 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHH
Confidence 68889999876 4788 88888877654
No 338
>PF00838 TCTP: Translationally controlled tumour protein; InterPro: IPR018105 Mammalian translationally controlled tumour protein (TCTP) (or P23) is a protein which has been found to be preferentially synthesised in cells during the early growth phase of some types of tumour [, ], but which is also expressed in normal cells. The physiological function of TCTP is still not known. It was first identified as a histamine-releasing factor, acting in IgE +-dependent allergic reactions. In addition, TCTP has been shown to bind to tubulin in the cytoskeleton, has a high affinity for calcium, is the binding target for the antimalarial compound artemisinin, and is induced in vitamin D-dependent apoptosis. TCTP production is thought to be controlled at the translational as well as the transcriptional level []. TCTP is a hydrophilic protein of 18 to 20 kD. TCTPs do not share significant sequence similarity with any other class of proteins. Recently, the structure of TCTP was determined and exhibited significant structural similarity to the human protein Mss4, which is a guanine nucleotide-free chaperone of the Rab protein []. Close homologues have been found in plants [], earthworm [], Caenorhabditis elegans (F52H2.11), Hydra, Saccharomyces cerevisiae (YKL056c) [] and Schizosaccharomyces pombe (SpAC1F12.02c).; PDB: 2KWB_A 2LOY_A 1TXJ_A 1H6Q_A 1H7Y_A 3P3K_A 1YZ1_C 3EBM_D 2HR9_A.
Probab=31.36 E-value=95 Score=20.44 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=24.9
Q ss_pred HHHHHHhhCCCeEEEEEECCCC---hhhhc--CCccccEEEEEeCC
Q 032967 68 AFCKLSNNFPKLSFIYADIDEC---PETTQ--HIRYTPTFHFYRDG 108 (130)
Q Consensus 68 ~~~~l~~~~~~v~~~~id~~~~---~~~~~--~v~~~Pt~~~~~~g 108 (130)
.+..+...|+++.|+.-..-.. -.+.. .=..+|.++++++|
T Consensus 117 ~vK~il~nfkd~qFf~Gesm~~dgmv~l~~yredg~tP~~~f~KdG 162 (165)
T PF00838_consen 117 FVKKILANFKDYQFFTGESMDPDGMVALLNYREDGVTPYFIFFKDG 162 (165)
T ss_dssp HHHHHHHTGGGCEEEEETTCCTTS-EEEEEEETTSSSEEEEEEGGG
T ss_pred HHHHHHhhccccccccccccCCCCcEEEEEecCCCccEEEEEEccc
Confidence 4455566677899886432211 12222 23478999999988
No 339
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=31.04 E-value=1.9e+02 Score=20.23 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=43.3
Q ss_pred CCCHhHHhhHH-HHHHHHhhCC-CeEEEEEECCCChhh-----hc--CCccccEEEEEeCCe--EEEEeeCCCHHHHHHH
Q 032967 57 SWCGVCNQILP-AFCKLSNNFP-KLSFIYADIDECPET-----TQ--HIRYTPTFHFYRDGE--RVDEMFGAGEERLHDR 125 (130)
Q Consensus 57 ~~C~~C~~~~~-~~~~l~~~~~-~v~~~~id~~~~~~~-----~~--~v~~~Pt~~~~~~g~--~~~~~~g~~~~~l~~~ 125 (130)
+.|..|+.++. .+.+++.++. +..+...+.+..-+. .. ++.+.+.......|. .+.-+...+.++|.++
T Consensus 110 ~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~Et~l~nl~rg~~l~~m~~~~~~~~~~i~iiRPLl~~~k~eI~~y 189 (258)
T PRK10696 110 TTCSLCSRLRRGILYRTARELGATKIALGHHRDDILETLFLNMFYGGKLKAMPPKLLSDDGKHIVIRPLAYVAEKDIIKF 189 (258)
T ss_pred ChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHHHHHHHHHHhCCcccccCCeeecCCCceeEEecCccCCHHHHHHH
Confidence 46889998875 5567777765 555554555433221 11 345555443333442 4555666689999988
Q ss_pred Hhhc
Q 032967 126 LWLH 129 (130)
Q Consensus 126 l~~~ 129 (130)
..++
T Consensus 190 ~~~~ 193 (258)
T PRK10696 190 AEAK 193 (258)
T ss_pred HHHc
Confidence 8764
No 340
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=30.84 E-value=1.1e+02 Score=21.62 Aligned_cols=39 Identities=15% Similarity=0.270 Sum_probs=29.8
Q ss_pred CcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECC
Q 032967 48 IPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADID 87 (130)
Q Consensus 48 ~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~ 87 (130)
.-+|=.|.|-.|..|=-....+.+++.+- ++.-+..++|
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~~-~vlALsyhVd 80 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADDP-GVLALSYHVD 80 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccCC-CEEEEEEeec
Confidence 34677788889999999999999998775 5555555554
No 341
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=30.71 E-value=1.6e+02 Score=19.64 Aligned_cols=37 Identities=5% Similarity=0.180 Sum_probs=27.1
Q ss_pred EEEEEeCCCCHhHHhhHHHHHHHHhhCC-CeEEEEEEC
Q 032967 50 AVINYGASWCGVCNQILPAFCKLSNNFP-KLSFIYADI 86 (130)
Q Consensus 50 ~lv~f~s~~C~~C~~~~~~~~~l~~~~~-~v~~~~id~ 86 (130)
.|-+|+..-||.|---...++++...++ .|.+.-+.+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 3456777789999999999988887665 556555544
No 342
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.45 E-value=1.5e+02 Score=20.80 Aligned_cols=33 Identities=6% Similarity=0.124 Sum_probs=21.7
Q ss_pred eCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECC
Q 032967 55 GASWCGVCNQILPAFCKLSNNFP--KLSFIYADID 87 (130)
Q Consensus 55 ~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~ 87 (130)
|..-|+.|..+.-.+.-...++. ++.++.|.-.
T Consensus 87 ~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRA 121 (247)
T COG4312 87 WDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRA 121 (247)
T ss_pred ccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecC
Confidence 34569999999888855444443 6777665433
No 343
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=30.33 E-value=1.3e+02 Score=18.03 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=15.6
Q ss_pred EEEEeCCCCHhHHhh-HHHHHH
Q 032967 51 VINYGASWCGVCNQI-LPAFCK 71 (130)
Q Consensus 51 lv~f~s~~C~~C~~~-~~~~~~ 71 (130)
|-.||-+-||.|+++ ...+..
T Consensus 3 v~vyyESlCPd~~~fi~~~L~p 24 (108)
T PF03227_consen 3 VEVYYESLCPDCRRFITNQLFP 24 (108)
T ss_pred EEEEEEecCHhHHHHHHHHHHH
Confidence 567999999999986 334443
No 344
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=30.29 E-value=2.7e+02 Score=21.81 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=25.0
Q ss_pred CcEEEEEeCC-CCHhHHhhHHHHHHHHhhCC--CeEEEEEE
Q 032967 48 IPAVINYGAS-WCGVCNQILPAFCKLSNNFP--KLSFIYAD 85 (130)
Q Consensus 48 ~~~lv~f~s~-~C~~C~~~~~~~~~l~~~~~--~v~~~~id 85 (130)
..+||.|+.+ ....=......+.++.++++ ++.++.+.
T Consensus 282 ~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~ 322 (499)
T PF05679_consen 282 FLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVK 322 (499)
T ss_pred EEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEec
Confidence 4478888874 33333445667788888887 57776666
No 345
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.19 E-value=1.9e+02 Score=22.11 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=35.1
Q ss_pred eeccChHHHHHHHHHhhcCC--CcEEEEEeCCCCHhHHh--hHHHHHHHHhh--CCCeEEEEEECC
Q 032967 28 KTASSDQNHKDILLQIKSSK--IPAVINYGASWCGVCNQ--ILPAFCKLSNN--FPKLSFIYADID 87 (130)
Q Consensus 28 ~~i~~~~~~~~~i~~~~~~~--~~~lv~f~s~~C~~C~~--~~~~~~~l~~~--~~~v~~~~id~~ 87 (130)
..+.+..++.+.+. +++ --....|-+..|++||. ..+.+++.-++ |++|.+..+|..
T Consensus 51 P~~ltiG~lid~~~---~g~~d~~n~~vlmt~TgGpCRfgnYi~~~rkaLk~aG~~~V~visLn~e 113 (420)
T COG3581 51 PAILTIGQLIDAIE---SGEYDIENDAVLMTQTGGPCRFGNYIELLRKALKDAGFRDVPVISLNSE 113 (420)
T ss_pred hhhhhHHHHHHHHH---hCCccccccEEEEecCCCCcchhhHHHHHHHHHHHcCCCCCcEEEeecc
Confidence 34445667777775 232 22334455559999993 45566665444 458999999843
No 346
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=29.31 E-value=1.1e+02 Score=21.01 Aligned_cols=44 Identities=9% Similarity=0.079 Sum_probs=26.9
Q ss_pred cCCCcEEEEEe-----CCCCHhHHhhHHHHHHHHhhCC--CeEEEEEECCC
Q 032967 45 SSKIPAVINYG-----ASWCGVCNQILPAFCKLSNNFP--KLSFIYADIDE 88 (130)
Q Consensus 45 ~~~~~~lv~f~-----s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~~~ 88 (130)
.....+|.+|- ...|+.|..+...+......+. ++.|+.|.-..
T Consensus 66 Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP 116 (211)
T PF05988_consen 66 GRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAP 116 (211)
T ss_pred CCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCC
Confidence 34444444444 4679999999888843333332 67777765543
No 347
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=29.27 E-value=1.2e+02 Score=20.08 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=19.9
Q ss_pred EEEEEeCCeEEEEeeCC-CHHHHHHHHhh
Q 032967 101 TFHFYRDGERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 101 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
|+++|..|+.+ ..|. +.+++.+.++.
T Consensus 141 t~lIF~sGkvv--itGaks~~~~~~a~~~ 167 (174)
T cd00652 141 VLLIFVSGKIV--ITGAKSREDIYEAVEK 167 (174)
T ss_pred EEEEEcCCEEE--EEecCCHHHHHHHHHH
Confidence 67888999866 4788 88888877654
No 348
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=29.15 E-value=1.8e+02 Score=22.72 Aligned_cols=50 Identities=10% Similarity=0.183 Sum_probs=31.4
Q ss_pred HHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCC
Q 032967 37 KDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDE 88 (130)
Q Consensus 37 ~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~ 88 (130)
++.+.+..+-+||.+|..-+.. |+.......-.++.++| ++.++-+||..
T Consensus 170 ervI~ELk~igKPFvillNs~~-P~s~et~~L~~eL~ekY-~vpVlpvnc~~ 219 (492)
T PF09547_consen 170 ERVIEELKEIGKPFVILLNSTK-PYSEETQELAEELEEKY-DVPVLPVNCEQ 219 (492)
T ss_pred HHHHHHHHHhCCCEEEEEeCCC-CCCHHHHHHHHHHHHHh-CCcEEEeehHH
Confidence 3445555678888777765532 33333333445667778 88888899873
No 349
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=28.63 E-value=1.7e+02 Score=21.46 Aligned_cols=41 Identities=7% Similarity=0.045 Sum_probs=32.2
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEEC
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADI 86 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~ 86 (130)
.++|+|+.|-...-+.++.+...+++.+++.. ++-++.+..
T Consensus 157 dGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~~ 199 (345)
T PF14307_consen 157 DGKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQG 199 (345)
T ss_pred CCEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEec
Confidence 45888888888778889999999999988854 566666554
No 350
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=28.16 E-value=70 Score=18.54 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=18.7
Q ss_pred CHhH--HhhHHHHHHH---HhhCCC--eEEEEEECC
Q 032967 59 CGVC--NQILPAFCKL---SNNFPK--LSFIYADID 87 (130)
Q Consensus 59 C~~C--~~~~~~~~~l---~~~~~~--v~~~~id~~ 87 (130)
|..| .....++.++ .+.|++ |.++.+|-.
T Consensus 36 ~f~~~~~~~~~Vl~el~~c~~~~p~~YVRlig~D~~ 71 (84)
T cd00307 36 CGPIEGRSEAQVLAALEACLAEHPGEYVRLIGIDPK 71 (84)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCC
Confidence 6667 5555555554 577875 888777755
No 351
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=28.11 E-value=1.1e+02 Score=16.52 Aligned_cols=49 Identities=16% Similarity=0.055 Sum_probs=28.8
Q ss_pred EEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECC---CChhhhc--CCccccEEEE
Q 032967 53 NYGASWCGVCNQILPAFCKLSNNFPKLSFIYADID---ECPETTQ--HIRYTPTFHF 104 (130)
Q Consensus 53 ~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~---~~~~~~~--~v~~~Pt~~~ 104 (130)
.|+.+.|+.|....-.+....- .+.+..+|.. ..++... ....+|++..
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~ 56 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNGL---DVEIVDFQPGKENKTPEFLKKFPLGKVPAFEG 56 (75)
T ss_pred EecCCCCccHHHHHHHHHHcCC---ceEEEecccccccCCHHHHHhCCCCCCCEEEc
Confidence 4677788888877655554321 3444555553 2233333 5678999864
No 352
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=27.61 E-value=1.1e+02 Score=16.28 Aligned_cols=49 Identities=8% Similarity=0.002 Sum_probs=26.0
Q ss_pred EEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCC--hhhhc--CCccccEEEE
Q 032967 53 NYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDEC--PETTQ--HIRYTPTFHF 104 (130)
Q Consensus 53 ~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~--~~~~~--~v~~~Pt~~~ 104 (130)
.+|.+.|+.|+..+=.++...-.| ....++..+. +++.. ....+|++..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~gi~~---e~~~~~~~~~~~~~~~~~~p~~~vP~L~~ 55 (72)
T cd03039 3 LTYFNIRGRGEPIRLLLADAGVEY---EDVRITYEEWPELDLKPTLPFGQLPVLEI 55 (72)
T ss_pred EEEEcCcchHHHHHHHHHHCCCCc---EEEEeCHHHhhhhhhccCCcCCCCCEEEE
Confidence 355577888887765555543332 3333343221 11222 5567898863
No 353
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=27.41 E-value=46 Score=18.64 Aligned_cols=14 Identities=29% Similarity=0.826 Sum_probs=11.1
Q ss_pred ccEEEEEeCCeEEE
Q 032967 99 TPTFHFYRDGERVD 112 (130)
Q Consensus 99 ~Pt~~~~~~g~~~~ 112 (130)
.|++.++++|+.+.
T Consensus 12 ~P~v~W~k~g~~i~ 25 (81)
T cd04971 12 KPTLTWYHNGAVLN 25 (81)
T ss_pred CCcEEEEECCEECc
Confidence 46899999997653
No 354
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=27.23 E-value=47 Score=19.80 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=18.9
Q ss_pred EeCCCCHhHHhhHHHHHHHHhh
Q 032967 54 YGASWCGVCNQILPAFCKLSNN 75 (130)
Q Consensus 54 f~s~~C~~C~~~~~~~~~l~~~ 75 (130)
||-+|..+.++....+++++.+
T Consensus 32 ~ylswakpykrahesieklsnk 53 (126)
T PF13120_consen 32 FYLSWAKPYKRAHESIEKLSNK 53 (126)
T ss_pred eeeeecChhhHHHhHHHHhccc
Confidence 5778999999999999998755
No 355
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=27.16 E-value=1.9e+02 Score=19.14 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=19.6
Q ss_pred EEEEEeCCeEEEEeeCC-CHHHHHHHHhh
Q 032967 101 TFHFYRDGERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 101 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
++++|..|+.+ ..|. +.+++.+.++.
T Consensus 140 ~~liF~sGkvv--itGaks~~~~~~a~~~ 166 (174)
T cd04516 140 VLLIFVSGKIV--LTGAKSREEIYQAFEN 166 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHH
Confidence 47888899866 4677 88888877653
No 356
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=27.08 E-value=1.4e+02 Score=17.60 Aligned_cols=48 Identities=10% Similarity=0.129 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEE
Q 032967 33 DQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYA 84 (130)
Q Consensus 33 ~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~i 84 (130)
.+++.+.+. ..++-+|-+...+......+....+.+.+..+++.++-.
T Consensus 40 ~~~l~~~~~----~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~G 87 (121)
T PF02310_consen 40 PEELVEALR----AERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVG 87 (121)
T ss_dssp HHHHHHHHH----HTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred HHHHHHHHh----cCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 366666664 336666667666777777777667776666676555433
No 357
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=27.00 E-value=1.4e+02 Score=20.01 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=21.6
Q ss_pred cEEEEEeCCeEEEEeeCC-CHHHHHHHHhh
Q 032967 100 PTFHFYRDGERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 100 Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
+++++|+.|+.+. .|. +.++++..+.+
T Consensus 54 ~a~LIF~SGK~Vc--TGaKs~ed~~~av~~ 81 (185)
T COG2101 54 TAALIFRSGKVVC--TGAKSVEDVHRAVKK 81 (185)
T ss_pred ceEEEEecCcEEE--eccCcHHHHHHHHHH
Confidence 4799999998774 788 88888887764
No 358
>PHA02151 hypothetical protein
Probab=26.92 E-value=46 Score=21.88 Aligned_cols=15 Identities=13% Similarity=0.572 Sum_probs=11.2
Q ss_pred CCCcEEEEEeCCCCH
Q 032967 46 SKIPAVINYGASWCG 60 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~ 60 (130)
.+.--.|+||..||.
T Consensus 202 r~h~~~v~fy~kwct 216 (217)
T PHA02151 202 RNHDRYVHFYKKWCT 216 (217)
T ss_pred ccCceEEEEehhhcc
Confidence 334458899999994
No 359
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=26.87 E-value=1.9e+02 Score=18.96 Aligned_cols=42 Identities=12% Similarity=0.178 Sum_probs=35.5
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECC
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADID 87 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~ 87 (130)
..+.++..|-|-.-+-|..-...|.+.+.++.++.++.|..|
T Consensus 44 gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~D 85 (158)
T COG2077 44 GKKKVISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISMD 85 (158)
T ss_pred CceEEEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeCC
Confidence 556677788888999999999999999999988888877776
No 360
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=26.86 E-value=1.2e+02 Score=16.69 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=18.2
Q ss_pred EeCCeEE-EEeeCC-CHHHHHHHHhhc
Q 032967 105 YRDGERV-DEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 105 ~~~g~~~-~~~~g~-~~~~l~~~l~~~ 129 (130)
+.+|+.+ .++... +.++|.+||..+
T Consensus 9 lpdG~~~~~~F~~~~tl~~l~~fv~~~ 35 (77)
T cd01767 9 LPDGKRLEQRFNSTHKLSDVRDFVESN 35 (77)
T ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHHc
Confidence 3588755 555555 899999999764
No 361
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=26.14 E-value=1.6e+02 Score=20.40 Aligned_cols=30 Identities=13% Similarity=0.039 Sum_probs=25.0
Q ss_pred eccChHHHHHHHHHhhcCCCcEEEEEeCCC
Q 032967 29 TASSDQNHKDILLQIKSSKIPAVINYGASW 58 (130)
Q Consensus 29 ~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~ 58 (130)
.+.+.+++.+.+..+...++|.||.+..+.
T Consensus 172 ~v~~~~el~~al~~a~~~~gP~lIev~~~C 201 (235)
T cd03376 172 SVAYPEDLYKKVKKALSIEGPAYIHILSPC 201 (235)
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 467888998888887788899999998873
No 362
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=25.94 E-value=1.4e+02 Score=19.68 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=19.9
Q ss_pred EEEEEeCCeEEEEeeCC-CHHHHHHHHhh
Q 032967 101 TFHFYRDGERVDEMFGA-GEERLHDRLWL 128 (130)
Q Consensus 101 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~ 128 (130)
++++|..|+.+ ..|. +.+++.+.++.
T Consensus 141 t~lIF~sGkiv--itGaks~~~~~~a~~~ 167 (174)
T cd04517 141 TLSIFSTGSVT--VTGARSMEDVREAVEK 167 (174)
T ss_pred EEEEeCCCEEE--EEecCCHHHHHHHHHH
Confidence 68888899766 4788 88888887754
No 363
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.81 E-value=59 Score=25.12 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=24.6
Q ss_pred CCCCceeeccChHHHHHHHHHhhcCCCcEEEEEeCCCCHh
Q 032967 22 NHHGHLKTASSDQNHKDILLQIKSSKIPAVINYGASWCGV 61 (130)
Q Consensus 22 ~~~~~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~ 61 (130)
..+.+++.+.+.++|...|+ +++.++ +|||+.
T Consensus 462 ~rds~~~~v~~~~eF~~aL~----~k~iil----aPwcg~ 493 (551)
T KOG4163|consen 462 KRDSHIVKVNTWEEFVKALD----QKKIIL----APWCGE 493 (551)
T ss_pred HhhhheeeeeeHHHHHHHhc----cCCEEE----ccccCc
Confidence 35667888889999999984 666555 899965
No 364
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=25.79 E-value=1.5e+02 Score=19.32 Aligned_cols=32 Identities=13% Similarity=-0.065 Sum_probs=20.6
Q ss_pred ceeeccChHHHH---HHHHHhhcCCCcEEEEEeCC
Q 032967 26 HLKTASSDQNHK---DILLQIKSSKIPAVINYGAS 57 (130)
Q Consensus 26 ~~~~i~~~~~~~---~~i~~~~~~~~~~lv~f~s~ 57 (130)
....+.+.++++ +.+..+...++|.+|...++
T Consensus 143 ~~~~v~~~~~l~~~~~al~~a~~~~gp~lI~v~~~ 177 (178)
T cd02008 143 KRVVVVDPYDLKAIREELKEALAVPGVSVIIAKRP 177 (178)
T ss_pred CEEEecCccCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 345555666666 55565555678888877765
No 365
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=25.67 E-value=3.1e+02 Score=20.97 Aligned_cols=92 Identities=12% Similarity=0.194 Sum_probs=53.1
Q ss_pred cChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHH--HHHHHHhhCCCeEEEEEECCC------ChhhhcCCccccEE
Q 032967 31 SSDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILP--AFCKLSNNFPKLSFIYADIDE------CPETTQHIRYTPTF 102 (130)
Q Consensus 31 ~~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~--~~~~l~~~~~~v~~~~id~~~------~~~~~~~v~~~Pt~ 102 (130)
....++...|. .+...+++.+++.| .-..+.+ .+.+++..+ ++..+ +|... .+.+..-+..=+-+
T Consensus 144 t~~~d~~~AIn----e~ta~llkV~s~~~-~f~~~l~~~~l~~ia~~~-~lpvi-vD~aSg~~v~~e~~l~~~la~GaDL 216 (395)
T COG1921 144 THLKDYELAIN----ENTALLLKVHSSNY-GFTGMLSEEELVEIAHEK-GLPVI-VDLASGALVDKEPDLREALALGADL 216 (395)
T ss_pred CCHHHHHHHhc----cCCeeEEEEeeccc-cccccccHHHHHHHHHHc-CCCEE-EecCCccccccccchhHHHhcCCCE
Confidence 45678888884 88899999999999 3344444 488888887 44433 34432 22222111112446
Q ss_pred EEEeCCeEEEEe-eCC--CHHHHHHHHhhc
Q 032967 103 HFYRDGERVDEM-FGA--GEERLHDRLWLH 129 (130)
Q Consensus 103 ~~~~~g~~~~~~-~g~--~~~~l~~~l~~~ 129 (130)
++|..++....- .|. -..++++.++.+
T Consensus 217 V~~SgdKllgGPqaGii~GkKelI~~lq~~ 246 (395)
T COG1921 217 VSFSGDKLLGGPQAGIIVGKKELIEKLQSH 246 (395)
T ss_pred EEEecchhcCCCccceEechHHHHHHHHhh
Confidence 777766544311 333 456666666543
No 366
>PF06279 DUF1033: Protein of unknown function (DUF1033); InterPro: IPR010434 This family consists of several hypothetical bacterial proteins. Many of the sequences in this family are annotated as putative DNA binding proteins but the function of this family is unknown.
Probab=25.45 E-value=53 Score=20.45 Aligned_cols=27 Identities=26% Similarity=0.583 Sum_probs=20.2
Q ss_pred CCCcEEEEEeCC----CCHhHHhhHHHHHHH
Q 032967 46 SKIPAVINYGAS----WCGVCNQILPAFCKL 72 (130)
Q Consensus 46 ~~~~~lv~f~s~----~C~~C~~~~~~~~~l 72 (130)
+++-.+.-||.+ ||..|-.-...+--|
T Consensus 56 s~~~~~~AFWn~~e~~wCEdCdddLQ~yhsl 86 (120)
T PF06279_consen 56 SKKNLMTAFWNECEQRWCEDCDDDLQQYHSL 86 (120)
T ss_pred eccccEEEeccccchhhhhcchHHHHHHhhe
Confidence 456688899996 899999876555444
No 367
>cd06105 ScCit1-2_like Saccharomyces cerevisiae (Sc) citrate synthases Cit1-2_like. Citrate synthases (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) with oxaloacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). Some CS proteins function as 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-neg
Probab=25.29 E-value=2.6e+02 Score=21.56 Aligned_cols=58 Identities=14% Similarity=-0.048 Sum_probs=38.6
Q ss_pred HHHHHHHHhhCCCeEEEEEECCCChhhhcCCccccE---EEEEeCCeEEEEeeCCCHHHHHHHH
Q 032967 66 LPAFCKLSNNFPKLSFIYADIDECPETTQHIRYTPT---FHFYRDGERVDEMFGAGEERLHDRL 126 (130)
Q Consensus 66 ~~~~~~l~~~~~~v~~~~id~~~~~~~~~~v~~~Pt---~~~~~~g~~~~~~~g~~~~~l~~~l 126 (130)
.+.+.++.++|.++.+..+..+. ...+..++|. =+-+-+|+.--+|-|++.++|.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~t~d~---~~~Gl~g~~~~~t~iS~iDg~~Gl~YRGy~I~dLa~~~ 73 (427)
T cd06105 13 QARIKKFRKEHGKTVVGEVTVDM---VYGGMRGIKGLVWETSVLDPEEGIRFRGLSIPECQKLL 73 (427)
T ss_pred HHHHHHHHHHcCCcceeeeecCc---ccCCCCCceecceeceeEcCCCCeEECCccHHHHHhhC
Confidence 45778888889888887776663 2225555554 5555555543378899999887754
No 368
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=25.10 E-value=1.2e+02 Score=16.21 Aligned_cols=53 Identities=9% Similarity=-0.066 Sum_probs=31.0
Q ss_pred EEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCC----Chhhhc--CCccccEEEEEeCCe
Q 032967 52 INYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDE----CPETTQ--HIRYTPTFHFYRDGE 109 (130)
Q Consensus 52 v~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~----~~~~~~--~v~~~Pt~~~~~~g~ 109 (130)
..|+.+.++.|+.+.-.+....-. .....+|... .+++.. ....+|++.. +|.
T Consensus 2 ~ly~~~~s~~~~~v~~~l~~~g~~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~ 60 (76)
T cd03050 2 KLYYDLMSQPSRAVYIFLKLNKIP---FEECPIDLRKGEQLTPEFKKINPFGKVPAIVD--GDF 60 (76)
T ss_pred EEeeCCCChhHHHHHHHHHHcCCC---cEEEEecCCCCCcCCHHHHHhCcCCCCCEEEE--CCE
Confidence 357778899998876655554333 3444455432 123333 5678898863 553
No 369
>KOG2990 consensus C2C2-type Zn-finger protein [Function unknown]
Probab=24.91 E-value=61 Score=23.41 Aligned_cols=23 Identities=22% Similarity=0.569 Sum_probs=17.6
Q ss_pred CCCcEEEEEeCC---CCHhHHhhHHH
Q 032967 46 SKIPAVINYGAS---WCGVCNQILPA 68 (130)
Q Consensus 46 ~~~~~lv~f~s~---~C~~C~~~~~~ 68 (130)
...+.||-|--| ||..|.....+
T Consensus 39 ~~gilvIRFEMPynIWC~gC~nhIgm 64 (317)
T KOG2990|consen 39 DQGILVIRFEMPYNIWCDGCKNHIGM 64 (317)
T ss_pred ccceEEEEEecccchhhccHHHhhhc
Confidence 567888888555 99999986643
No 370
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=24.56 E-value=1.8e+02 Score=18.96 Aligned_cols=32 Identities=9% Similarity=0.044 Sum_probs=20.1
Q ss_pred ceeeccChHHHHHHHHHhhcCCCcEEEEEeCC
Q 032967 26 HLKTASSDQNHKDILLQIKSSKIPAVINYGAS 57 (130)
Q Consensus 26 ~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s~ 57 (130)
.-..+.+.+++.+.+..+...++++||.+..+
T Consensus 143 ~~~~v~~~~el~~al~~a~~~~~p~liev~~~ 174 (186)
T cd02015 143 KGLRVEKPEELEAALKEALASDGPVLLDVLVD 174 (186)
T ss_pred ceEEeCCHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 34455666777776666656666777766654
No 371
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=24.49 E-value=1.6e+02 Score=17.26 Aligned_cols=32 Identities=13% Similarity=0.033 Sum_probs=20.1
Q ss_pred CCccccEEEEEe--CCeEEEEeeCCCHHHHHHHHhhc
Q 032967 95 HIRYTPTFHFYR--DGERVDEMFGAGEERLHDRLWLH 129 (130)
Q Consensus 95 ~v~~~Pt~~~~~--~g~~~~~~~g~~~~~l~~~l~~~ 129 (130)
+=..-|++++|. +|.- |...+++++...|..+
T Consensus 49 ~c~~gp~vvvyP~~~g~w---y~~v~p~~v~~Iv~~h 82 (97)
T cd03062 49 GHKFAGNVIIYPKGDGIW---YGRVTPEHVPPIVDRL 82 (97)
T ss_pred ccCcCCEEEEEeCCCeeE---EeecCHHHHHHHHHHH
Confidence 445679999998 6622 2233777776666543
No 372
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=24.44 E-value=52 Score=20.91 Aligned_cols=9 Identities=56% Similarity=1.287 Sum_probs=6.9
Q ss_pred CCHhHHhhH
Q 032967 58 WCGVCNQIL 66 (130)
Q Consensus 58 ~C~~C~~~~ 66 (130)
=|+.||++.
T Consensus 87 PCG~CRQ~i 95 (134)
T COG0295 87 PCGACRQVL 95 (134)
T ss_pred CcHHHHHHH
Confidence 499999854
No 373
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.43 E-value=25 Score=23.71 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=32.7
Q ss_pred CCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCC-----hhhhc--CCccccEEEEEeCCeE
Q 032967 46 SKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADIDEC-----PETTQ--HIRYTPTFHFYRDGER 110 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~-----~~~~~--~v~~~Pt~~~~~~g~~ 110 (130)
.++++|--+|.+.|..=.+..=.+..+ +....-||.-+. .++.. ....+|++.+ +|-.
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~i-----DYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~t 67 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGI-----DYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLT 67 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCC-----CcceeehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEE
Confidence 458888888888887755544333333 333334444322 12222 5568899876 5543
No 374
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=24.18 E-value=65 Score=17.73 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=10.9
Q ss_pred cccEEEEEeCCeEE
Q 032967 98 YTPTFHFYRDGERV 111 (130)
Q Consensus 98 ~~Pt~~~~~~g~~~ 111 (130)
-.|++.++++|..+
T Consensus 11 P~P~i~W~k~~~~i 24 (75)
T cd05892 11 PPPKIFWKRNNEMV 24 (75)
T ss_pred CCCeEEEEECCEEC
Confidence 35689999998765
No 375
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=24.00 E-value=2e+02 Score=22.09 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=31.2
Q ss_pred EEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECC
Q 032967 50 AVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADID 87 (130)
Q Consensus 50 ~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~ 87 (130)
-+|-||+..-+.-+.+.|.++++.+.+|++.+...-++
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T 87 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMT 87 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecC
Confidence 57789999999999999999999999997766655543
No 376
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=23.75 E-value=1.8e+02 Score=18.98 Aligned_cols=32 Identities=13% Similarity=0.005 Sum_probs=21.4
Q ss_pred CceeeccChHHHHHHHHHhhcCCCcEEEEEeC
Q 032967 25 GHLKTASSDQNHKDILLQIKSSKIPAVINYGA 56 (130)
Q Consensus 25 ~~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~s 56 (130)
.....+.+.+++.+.+.++.+.++|.||....
T Consensus 138 ~~~~~v~~~~el~~al~~a~~~~~p~liev~~ 169 (177)
T cd02010 138 AKGYRIESADDLLPVLERALAADGVHVIDCPV 169 (177)
T ss_pred CEEEEECCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 34456667777777777666667777776654
No 377
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=23.63 E-value=1.9e+02 Score=18.10 Aligned_cols=29 Identities=21% Similarity=0.152 Sum_probs=22.6
Q ss_pred CceeeccCh--HHHHHHHHHhhcCCCcEEEE
Q 032967 25 GHLKTASSD--QNHKDILLQIKSSKIPAVIN 53 (130)
Q Consensus 25 ~~~~~i~~~--~~~~~~i~~~~~~~~~~lv~ 53 (130)
.....+.+. +++++.+..+...++|.||.
T Consensus 122 ~~~~~v~~~~~~el~~al~~a~~~~gp~vIe 152 (153)
T PF02775_consen 122 IKGARVTTPDPEELEEALREALESGGPAVIE 152 (153)
T ss_dssp SEEEEESCHSHHHHHHHHHHHHHSSSEEEEE
T ss_pred CcEEEEccCCHHHHHHHHHHHHhCCCcEEEE
Confidence 344566677 89999999888888998886
No 378
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic. This model includes both mitochondrial and peroxisomal forms of citrate synthase. Citrate synthase is the entry point to the TCA cycle from acetyl-CoA. Peroxisomal forms, such as SP:P08679 from yeast (recognized by the C-terminal targeting motif SKL) act in the glyoxylate cycle. Eukaryotic homologs excluded by the high trusted cutoff of this model include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans.
Probab=23.30 E-value=2.4e+02 Score=21.70 Aligned_cols=59 Identities=15% Similarity=-0.049 Sum_probs=36.6
Q ss_pred HHHHHHHHhhCCCeEEEEEECCCChhhhcCCccccE---EEEEeCCeEEEEeeCCCHHHHHHHHh
Q 032967 66 LPAFCKLSNNFPKLSFIYADIDECPETTQHIRYTPT---FHFYRDGERVDEMFGAGEERLHDRLW 127 (130)
Q Consensus 66 ~~~~~~l~~~~~~v~~~~id~~~~~~~~~~v~~~Pt---~~~~~~g~~~~~~~g~~~~~l~~~l~ 127 (130)
.+.+.++.++|.+..+..+.++. ...|..+++. =+-+-+|+.--+|-|++.+++.+.+.
T Consensus 16 ~~~~~~l~~~~g~~~~~~~t~~~---~~~Glrgv~~~~t~iS~iD~~~Gl~yRGy~I~dl~~~~~ 77 (427)
T TIGR01793 16 QEKVKKLRAEHGKVVLGNITVDM---VYGGMRGMKGLVWETSVLDPEEGIRFRGLSIPECQKLLP 77 (427)
T ss_pred HHHHHHHHHHcCCceeeeeeHhh---ccCccCCCcccceeceEEcCCCCeEECCeeHHHHHHHhc
Confidence 45667788888888887776664 2226666653 33333444324688998888765443
No 379
>smart00592 BRK domain in transcription and CHROMO domain helicases.
Probab=23.18 E-value=1e+02 Score=15.52 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=15.4
Q ss_pred eCCeEEEEeeCCCHHHHHHHHhhc
Q 032967 106 RDGERVDEMFGAGEERLHDRLWLH 129 (130)
Q Consensus 106 ~~g~~~~~~~g~~~~~l~~~l~~~ 129 (130)
++|+.+..-.-...++|.+||+.+
T Consensus 12 ~tG~~l~g~~aP~~~~l~~WL~~~ 35 (45)
T smart00592 12 ETGKKLTGDDAPKAKDLERWLEEN 35 (45)
T ss_pred CCccEeccccCCcHHHHHHHHhcC
Confidence 456555433333788999999865
No 380
>PRK11752 putative S-transferase; Provisional
Probab=23.17 E-value=2.7e+02 Score=19.47 Aligned_cols=53 Identities=8% Similarity=-0.051 Sum_probs=32.9
Q ss_pred EEEeCCCCHhHHhhHHHHHHH-HhhCC--CeEEEEEECCC----Chhhhc--CCccccEEEE
Q 032967 52 INYGASWCGVCNQILPAFCKL-SNNFP--KLSFIYADIDE----CPETTQ--HIRYTPTFHF 104 (130)
Q Consensus 52 v~f~s~~C~~C~~~~~~~~~l-~~~~~--~v~~~~id~~~----~~~~~~--~v~~~Pt~~~ 104 (130)
+.+|+..++.|++..-.+.++ +...+ .+.+..+|... .+++.. ....+|+++.
T Consensus 45 ~~Ly~~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~ 106 (264)
T PRK11752 45 LQLYSLGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLD 106 (264)
T ss_pred eEEecCCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEe
Confidence 334445689999988878774 33333 35666666643 234433 5568999975
No 381
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=23.05 E-value=67 Score=16.67 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHH--HHHHHH
Q 032967 34 QNHKDILLQIKSSKIPAVINYGASWCGVCNQILP--AFCKLS 73 (130)
Q Consensus 34 ~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~--~~~~l~ 73 (130)
+.|+++.+ ..+.+.++......|..|....| .+.++.
T Consensus 3 ~~Y~rl~~---~~~g~~va~v~~~~C~gC~~~l~~~~~~~i~ 41 (56)
T PF02591_consen 3 AEYERLRK---RKGGVAVARVEGGTCSGCHMELPPQELNEIR 41 (56)
T ss_pred HHHHHHHh---hcCCcEEEEeeCCccCCCCEEcCHHHHHHHH
Confidence 45677764 45899999999999999996544 334443
No 382
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=22.69 E-value=1.5e+02 Score=21.05 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=22.9
Q ss_pred cEEEEEeCCCCHhHH-hhHHHHHHHHhhCCCeEEEEE
Q 032967 49 PAVINYGASWCGVCN-QILPAFCKLSNNFPKLSFIYA 84 (130)
Q Consensus 49 ~~lv~f~s~~C~~C~-~~~~~~~~l~~~~~~v~~~~i 84 (130)
++|+.|.+++-.... .+...-+++.+.||+..+...
T Consensus 3 IllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~A 39 (262)
T PF06180_consen 3 ILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRA 39 (262)
T ss_dssp EEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 567888888877777 666677778888887665543
No 383
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=22.60 E-value=2.2e+02 Score=20.75 Aligned_cols=30 Identities=13% Similarity=0.094 Sum_probs=25.3
Q ss_pred eccChHHHHHHHHHhhcCCCcEEEEEeCCC
Q 032967 29 TASSDQNHKDILLQIKSSKIPAVINYGASW 58 (130)
Q Consensus 29 ~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~ 58 (130)
.+.+..++.+.+..+.+.+.+.+|..++|.
T Consensus 183 ~~~~~~~l~~~i~~A~~~~Gps~I~v~sPC 212 (299)
T PRK11865 183 SIGYPEDFMEKVKKAKEVEGPAYIQVLQPC 212 (299)
T ss_pred eCCCHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 455778888888888888999999999984
No 384
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=22.16 E-value=1.5e+02 Score=16.02 Aligned_cols=29 Identities=21% Similarity=0.333 Sum_probs=20.1
Q ss_pred ccccEEEEEeCCeEEEEeeCC-CHHHHHHHHhhc
Q 032967 97 RYTPTFHFYRDGERVDEMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 97 ~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 129 (130)
..-|.+.+..++. ..+. +++++.+.|+++
T Consensus 48 ~~~P~v~i~~~~~----~y~~v~~~~~~~il~~~ 77 (77)
T cd02980 48 GLAPVVVVYPDGV----WYGRVTPEDVEEIVEEL 77 (77)
T ss_pred cCCCEEEEeCCCe----EEccCCHHHHHHHHHhC
Confidence 4568888886442 3455 888888888764
No 385
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=21.84 E-value=2e+02 Score=17.42 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=15.1
Q ss_pred EEEEeCCCCHhHHhhHHHHHHHHhh
Q 032967 51 VINYGASWCGVCNQILPAFCKLSNN 75 (130)
Q Consensus 51 lv~f~s~~C~~C~~~~~~~~~l~~~ 75 (130)
+|.|+| ..++.+.+...+.+-...
T Consensus 2 ~Iiy~S-~tGnT~~~A~~i~~~~~~ 25 (140)
T TIGR01753 2 LIVYAS-MTGNTEEMANIIAEGLKE 25 (140)
T ss_pred EEEEEC-CCcHHHHHHHHHHHHHHh
Confidence 344444 578888888777665544
No 386
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=21.75 E-value=1.6e+02 Score=16.41 Aligned_cols=25 Identities=12% Similarity=0.039 Sum_probs=17.8
Q ss_pred EeCCeEEE-EeeCC-CHHHHHHHHhhc
Q 032967 105 YRDGERVD-EMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 105 ~~~g~~~~-~~~g~-~~~~l~~~l~~~ 129 (130)
+.+|+.+. ++.-. +.+++.+||..+
T Consensus 11 lp~G~~~~~~F~~~~tl~~v~~fV~~~ 37 (79)
T cd01772 11 LLDGTTLKQTFKAREQLAAVRLFVELN 37 (79)
T ss_pred CCCCCEEEEEeCCCChHHHHHHHHHHc
Confidence 35888665 44444 899999999754
No 387
>PRK12411 cytidine deaminase; Provisional
Probab=21.68 E-value=60 Score=20.43 Aligned_cols=12 Identities=33% Similarity=0.938 Sum_probs=8.6
Q ss_pred CCHhHHhhHHHH
Q 032967 58 WCGVCNQILPAF 69 (130)
Q Consensus 58 ~C~~C~~~~~~~ 69 (130)
=|+.||++.-.|
T Consensus 85 PCG~CRQ~l~Ef 96 (132)
T PRK12411 85 PCGACRQVMVEL 96 (132)
T ss_pred CchhHHHHHHHh
Confidence 499999975433
No 388
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=21.67 E-value=2e+02 Score=20.56 Aligned_cols=30 Identities=13% Similarity=0.016 Sum_probs=26.9
Q ss_pred eccChHHHHHHHHHhhcCCCcEEEEEeCCC
Q 032967 29 TASSDQNHKDILLQIKSSKIPAVINYGASW 58 (130)
Q Consensus 29 ~i~~~~~~~~~i~~~~~~~~~~lv~f~s~~ 58 (130)
.+.+.+++.+.+..+...++++||.+.++.
T Consensus 173 ~v~~~~el~~al~~Al~~~Gp~lIeV~~~c 202 (277)
T PRK09628 173 SVIDPQKLEKLLVKGFSHKGFSFFDVFSNC 202 (277)
T ss_pred ccCCHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 678899999999988889999999999883
No 389
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=21.42 E-value=78 Score=16.97 Aligned_cols=13 Identities=23% Similarity=0.892 Sum_probs=10.2
Q ss_pred ccEEEEEeCCeEE
Q 032967 99 TPTFHFYRDGERV 111 (130)
Q Consensus 99 ~Pt~~~~~~g~~~ 111 (130)
.|++.++++|..+
T Consensus 12 ~p~v~W~k~g~~l 24 (71)
T cd04976 12 PPEIQWYKNGKLI 24 (71)
T ss_pred CCEEEEEECCEEC
Confidence 4679999999765
No 390
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=21.40 E-value=64 Score=18.96 Aligned_cols=18 Identities=11% Similarity=0.346 Sum_probs=12.9
Q ss_pred CCccc--cEEEEEeCCeEEE
Q 032967 95 HIRYT--PTFHFYRDGERVD 112 (130)
Q Consensus 95 ~v~~~--Pt~~~~~~g~~~~ 112 (130)
.+.+. |++.|+++|..+.
T Consensus 26 ~v~g~P~P~v~W~kdg~~l~ 45 (101)
T cd05859 26 EVEAYPPPQIRWLKDNRTLI 45 (101)
T ss_pred EEEEeCCCceEEEECCEECc
Confidence 44555 4799999998653
No 391
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=21.33 E-value=3.5e+02 Score=20.03 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=33.9
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCCCeEEEEEECC
Q 032967 32 SDQNHKDILLQIKSSKIPAVINYGASWCGVCNQILPAFCKLSNNFPKLSFIYADID 87 (130)
Q Consensus 32 ~~~~~~~~i~~~~~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~ 87 (130)
+..++.+.+.....++.-+|+- ..-.+...+++++.+||++.|+.+|..
T Consensus 82 ~~~~~~~~~~~~a~~g~~lI~~-------~gf~~~d~~~~va~~~Pd~~F~iid~~ 130 (345)
T COG1744 82 SEADYERALRALAEDGYDLIFG-------TGFAFSDALEKVAAEYPDVKFVIIDGV 130 (345)
T ss_pred chhHHHHHHHHHHhcCCCEEEE-------eccchhhHHHHHHHHCCCCEEEEecCc
Confidence 4677877777555455533322 223456678899999999999999884
No 392
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=21.27 E-value=84 Score=21.78 Aligned_cols=21 Identities=14% Similarity=0.393 Sum_probs=17.8
Q ss_pred CCCcEEEEEeCCCCHhHHhhH
Q 032967 46 SKIPAVINYGASWCGVCNQIL 66 (130)
Q Consensus 46 ~~~~~lv~f~s~~C~~C~~~~ 66 (130)
.++.-|-.||-+-||.|+.+.
T Consensus 38 ~~~v~ItlyyEaLCPdc~~Fi 58 (220)
T KOG3160|consen 38 APKVNITLYYEALCPDCSKFI 58 (220)
T ss_pred CCeeEEEEEEEecCccHHHHH
Confidence 447888899999999999874
No 393
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=21.26 E-value=1e+02 Score=16.36 Aligned_cols=57 Identities=12% Similarity=0.132 Sum_probs=30.6
Q ss_pred CCCHhHHhhHHHHHHHHhhCCCeEEEEEECCCChhhhcCCccccEEEEEeCCeEEEEeeCCCHHHHHHHHh
Q 032967 57 SWCGVCNQILPAFCKLSNNFPKLSFIYADIDECPETTQHIRYTPTFHFYRDGERVDEMFGAGEERLHDRLW 127 (130)
Q Consensus 57 ~~C~~C~~~~~~~~~l~~~~~~v~~~~id~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~l~ 127 (130)
++|+.|++..-.+... ++.+-.++++... + .....+|++.. +|..+ . ....|.++|.
T Consensus 14 s~sp~~~~v~~~L~~~-----~i~~~~~~~~~~~-~-~p~g~vP~l~~--~g~~l---~--es~~I~~yL~ 70 (72)
T cd03054 14 SLSPECLKVETYLRMA-----GIPYEVVFSSNPW-R-SPTGKLPFLEL--NGEKI---A--DSEKIIEYLK 70 (72)
T ss_pred CCCHHHHHHHHHHHhC-----CCceEEEecCCcc-c-CCCcccCEEEE--CCEEE---c--CHHHHHHHHh
Confidence 5899999877555542 4444444444211 1 13457898864 45332 1 2345555554
No 394
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=21.16 E-value=1.1e+02 Score=18.50 Aligned_cols=16 Identities=25% Similarity=0.548 Sum_probs=11.5
Q ss_pred CCCCHhHHhhHHHHHH
Q 032967 56 ASWCGVCNQILPAFCK 71 (130)
Q Consensus 56 s~~C~~C~~~~~~~~~ 71 (130)
++.|+.|..-...+.+
T Consensus 31 ~s~Cp~C~kkraeLa~ 46 (104)
T PF15379_consen 31 SSQCPSCNKKRAELAQ 46 (104)
T ss_pred cccChHHHHHHHHHHH
Confidence 4569999987665544
No 395
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=21.11 E-value=1.8e+02 Score=16.60 Aligned_cols=54 Identities=19% Similarity=0.146 Sum_probs=31.8
Q ss_pred HHHHHHHHhhCCCeEEEEEECCCChhhhcCCccccEEEEEeCCeEEEEeeCCCHHHHHHHHhh
Q 032967 66 LPAFCKLSNNFPKLSFIYADIDECPETTQHIRYTPTFHFYRDGERVDEMFGAGEERLHDRLWL 128 (130)
Q Consensus 66 ~~~~~~l~~~~~~v~~~~id~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~l~~~l~~ 128 (130)
...++++. +.+++.+...+|-.+ + +.-....|.++ ||+.+ .|.++++|.+.|.+
T Consensus 17 ~~~~~~Le-~~p~~~Vie~gCl~~---C-g~C~~~pFAlV-nG~~V---~A~t~eeL~~kI~~ 70 (78)
T PF07293_consen 17 DQVYEKLE-KDPDIDVIEYGCLSY---C-GPCAKKPFALV-NGEIV---AAETAEELLEKIKE 70 (78)
T ss_pred HHHHHHHh-cCCCccEEEcChhhh---C-cCCCCCccEEE-CCEEE---ecCCHHHHHHHHHH
Confidence 44566665 457888877776532 2 33333333333 67655 46688888887765
No 396
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=21.07 E-value=1.7e+02 Score=16.43 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=17.9
Q ss_pred EeCCeEEE-EeeCC-CHHHHHHHHhhc
Q 032967 105 YRDGERVD-EMFGA-GEERLHDRLWLH 129 (130)
Q Consensus 105 ~~~g~~~~-~~~g~-~~~~l~~~l~~~ 129 (130)
+.+|+.+. ++.-. +..+|.+|+..+
T Consensus 11 lpdG~r~~~rF~~~~tv~~l~~~v~~~ 37 (79)
T cd01770 11 LADGKRLVQKFNSSHRVSDVRDFIVNA 37 (79)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHh
Confidence 36887654 55555 899999999753
No 397
>PRK06163 hypothetical protein; Provisional
Probab=21.01 E-value=2.2e+02 Score=19.24 Aligned_cols=29 Identities=17% Similarity=0.152 Sum_probs=16.0
Q ss_pred eccChHHHHHHHHHhhcCCCcEEEEEeCC
Q 032967 29 TASSDQNHKDILLQIKSSKIPAVINYGAS 57 (130)
Q Consensus 29 ~i~~~~~~~~~i~~~~~~~~~~lv~f~s~ 57 (130)
.+.+.+++...+..+.+.+++.||.+..+
T Consensus 145 ~v~~~~el~~al~~a~~~~~p~lIeV~i~ 173 (202)
T PRK06163 145 WAADEAHFEALVDQALSGPGPSFIAVRID 173 (202)
T ss_pred EeCCHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 34555566555555555556665555543
No 398
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=20.96 E-value=1.9e+02 Score=19.23 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=28.3
Q ss_pred cCCCcEEEEEeCCCCHhHHhhHHHHHHHHhhCC--CeEEEEEEC
Q 032967 45 SSKIPAVINYGASWCGVCNQILPAFCKLSNNFP--KLSFIYADI 86 (130)
Q Consensus 45 ~~~~~~lv~f~s~~C~~C~~~~~~~~~l~~~~~--~v~~~~id~ 86 (130)
-.++++||.=-|+.|+.=..--..+..|.++|+ ++.++..-|
T Consensus 32 yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPC 75 (171)
T KOG1651|consen 32 YRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPC 75 (171)
T ss_pred hCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEecc
Confidence 377888888888888776655556666666664 455554444
No 399
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=20.86 E-value=2.5e+02 Score=18.19 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=17.5
Q ss_pred eeeccChHHHHHHHHHhhcCCCcEEEEE
Q 032967 27 LKTASSDQNHKDILLQIKSSKIPAVINY 54 (130)
Q Consensus 27 ~~~i~~~~~~~~~i~~~~~~~~~~lv~f 54 (130)
...+.+.+++++.+..+...++|.+|..
T Consensus 145 ~~~v~~~~el~~al~~a~~~~~p~lIev 172 (175)
T cd02009 145 YRRVSSLDELEQALESALAQDGPHVIEV 172 (175)
T ss_pred eeeCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 3455566777666666655666666654
No 400
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=20.80 E-value=83 Score=17.04 Aligned_cols=13 Identities=23% Similarity=0.866 Sum_probs=10.4
Q ss_pred ccEEEEEeCCeEE
Q 032967 99 TPTFHFYRDGERV 111 (130)
Q Consensus 99 ~Pt~~~~~~g~~~ 111 (130)
.|++.++++|+.+
T Consensus 12 ~P~v~W~k~g~~l 24 (70)
T cd05864 12 PPEVKWYKNGQLI 24 (70)
T ss_pred CCEEEEEECCEEC
Confidence 4579999999765
No 401
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=20.67 E-value=2.5e+02 Score=18.03 Aligned_cols=30 Identities=23% Similarity=0.174 Sum_probs=20.1
Q ss_pred ceeeccChHHHHHHHHHhhcCCCcEEEEEe
Q 032967 26 HLKTASSDQNHKDILLQIKSSKIPAVINYG 55 (130)
Q Consensus 26 ~~~~i~~~~~~~~~i~~~~~~~~~~lv~f~ 55 (130)
....+.+.+++.+.+..+...++|.+|...
T Consensus 141 ~~~~v~~~~el~~al~~a~~~~~p~liev~ 170 (172)
T cd02004 141 KGELVTTPEELKPALKRALASGKPALINVI 170 (172)
T ss_pred eEEEECCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 345566677777777766666777777654
No 402
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=20.13 E-value=1.2e+02 Score=20.79 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=25.1
Q ss_pred cEEEEEeCCCCHhHHhhHHHHHHHHhhC
Q 032967 49 PAVINYGASWCGVCNQILPAFCKLSNNF 76 (130)
Q Consensus 49 ~~lv~f~s~~C~~C~~~~~~~~~l~~~~ 76 (130)
..|.+.+.|-|+=|-.+.|.++++....
T Consensus 2 ~~lhYifDPmCgWCyGa~Pll~~l~~~~ 29 (212)
T COG3531 2 VTLHYIFDPMCGWCYGAAPLLEALSAQP 29 (212)
T ss_pred ceeEEecCcchhhhhCccHHHHHHHhcC
Confidence 4578999999999999999999998775
Done!