Query 032971
Match_columns 130
No_of_seqs 125 out of 188
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 13:14:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032971.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032971hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l55_A SILB,silver efflux prot 9.5 75 0.0026 21.0 0.3 10 46-55 26-36 (82)
2 2a65_A Leutaa, Na(+):neurotran 9.0 2.7E+02 0.0094 24.0 3.7 40 13-52 336-375 (519)
3 3u02_A Putative transcription- 8.7 85 0.0029 25.2 0.4 12 114-125 46-58 (252)
4 4acf_A Glutamine synthetase 1; 8.1 90 0.0031 26.5 0.3 46 71-118 336-385 (486)
5 2qcp_X Cation efflux system pr 8.0 96 0.0033 20.3 0.3 10 46-55 32-42 (80)
6 1ans_A Neurotoxin III; NMR {An 6.5 4.2E+02 0.014 14.8 2.5 17 105-124 8-24 (27)
7 3arc_L Photosystem II reaction 6.3 4E+02 0.014 15.9 2.5 16 11-26 17-32 (37)
8 2vb2_X Copper protein, cation 6.0 1.4E+02 0.0047 19.9 0.3 10 46-55 40-50 (88)
9 3au7_A TIAS, putative uncharac 5.2 1.6E+02 0.0053 25.2 0.3 12 114-125 67-79 (402)
10 1lqv_A Endothelial protein C r 4.8 1.2E+02 0.0042 22.2 -0.6 18 80-103 174-191 (193)
No 1
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=9.48 E-value=75 Score=21.03 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=7.5
Q ss_pred ccccCc-cccc
Q 032971 46 DALEWP-MLSM 55 (130)
Q Consensus 46 ~~~~~~-~~~~ 55 (130)
.+|+|| |||.
T Consensus 26 ~~l~wPaMTM~ 36 (82)
T 2l55_A 26 PSAQWGAMTME 36 (82)
T ss_dssp TTTTCCCEEEE
T ss_pred cccCCCceEEE
Confidence 368999 6884
No 2
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=9.02 E-value=2.7e+02 Score=24.00 Aligned_cols=40 Identities=13% Similarity=0.205 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhHHhhhhccccCcc
Q 032971 13 FGIGLMLMHMISMNLLHVEAQVAVDESRLELMSDALEWPM 52 (130)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~aq~~vd~~~~~~~~~~~~~~~ 52 (130)
+|-+.+.++++.+....+.+++.+=|.-...+.|.+.|+.
T Consensus 336 ~g~~~~~lFF~~l~~agltS~i~~~E~~vt~l~D~~~~~R 375 (519)
T 2a65_A 336 GGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSR 375 (519)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCH
T ss_pred CccchHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhCCcH
Confidence 4555566666666666788888887777778888777754
No 3
>3u02_A Putative transcription-associated protein TFIIS; structural genomics, PSI-biology; HET: TPO MSE CIT MES; 2.40A {Pyrococcus furiosus dsm 3638}
Probab=8.75 E-value=85 Score=25.16 Aligned_cols=12 Identities=50% Similarity=0.955 Sum_probs=4.9
Q ss_pred CCCCC-CCCCCcc
Q 032971 114 PVHPY-TRGCSVI 125 (130)
Q Consensus 114 pANPY-sRGCs~i 125 (130)
|..|| +|||+..
T Consensus 46 P~iP~KTrgN~a~ 58 (252)
T 3u02_A 46 PNVPYKTRGNGAV 58 (252)
T ss_dssp TTC-----CCEEE
T ss_pred CCCCccCCCCcEE
Confidence 55677 6787653
No 4
>4acf_A Glutamine synthetase 1; ligase, nucleotide-binding, TRI-substituted IMID TAUT state, RV2220, GLNA1; HET: 46B P3S; 2.00A {Mycobacterium tuberculosis} PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 2bvc_A* 1hto_A* 1htq_A*
Probab=8.09 E-value=90 Score=26.50 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=26.3
Q ss_pred ccccccccccceeccccccCC---CCCCCCCCCCC-ccCCCCCCCCCCCCCC
Q 032971 71 RRSLFWQRMKYYISYGALSAN---RIPCPPRSGRS-YYTPNCYKARGPVHPY 118 (130)
Q Consensus 71 RR~L~~~~~~~YIsYgAL~rd---~vPC~pr~G~S-Yy~~nC~kp~~pANPY 118 (130)
||+.-+..+-.+|+||.=+|. +||+...++.+ +. -.+-|++-+|||
T Consensus 336 kRl~pg~~AP~~~~wg~~NRsa~iRip~~~~~~~~~ri--E~R~pd~~aNPY 385 (486)
T 4acf_A 336 KRLVPGYEAPINLVYSQRNRSACVRIPITGSNPKAKRL--EFRSPDSSGNPY 385 (486)
T ss_dssp HHSSTTSSSCSBSCEEETCTTSSEEECCCTTCTTTCCE--EECCCCSSSCHH
T ss_pred hccCCCCcCCceeEEeccCCCcceEecccCCCCcccee--eecCCCCCCCHH
Confidence 565543344568999977774 45764321111 12 233478899998
No 5
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=7.97 E-value=96 Score=20.30 Aligned_cols=10 Identities=40% Similarity=0.883 Sum_probs=7.3
Q ss_pred ccccCc-cccc
Q 032971 46 DALEWP-MLSM 55 (130)
Q Consensus 46 ~~~~~~-~~~~ 55 (130)
.+++|| |||.
T Consensus 32 ~~l~wpaMTM~ 42 (80)
T 2qcp_X 32 AAVNWPEMTMR 42 (80)
T ss_dssp GGGTBCSEEEE
T ss_pred ccCCCCceEEE
Confidence 468999 6774
No 6
>1ans_A Neurotoxin III; NMR {Anemonia sulcata} SCOP: g.11.1.1
Probab=6.48 E-value=4.2e+02 Score=14.83 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCCCCCCCCc
Q 032971 105 TPNCYKARGPVHPYTRGCSV 124 (130)
Q Consensus 105 ~~nC~kp~~pANPYsRGCs~ 124 (130)
..+|. =-.|-|.-|||-
T Consensus 8 ~~gCp---WGQ~~~~~GCSg 24 (27)
T 1ans_A 8 WGGCP---WGQNCYPEGCSG 24 (27)
T ss_dssp TTTCS---SSCSSCSSCSSS
T ss_pred ccCCc---cccccccccCcC
Confidence 34673 345778888874
No 7
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=6.35 E-value=4e+02 Score=15.94 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHhh
Q 032971 11 LKFGIGLMLMHMISMN 26 (130)
Q Consensus 11 ~~~~~~~~~~~~~~~~ 26 (130)
|-.||+|.+.+.++++
T Consensus 17 Ly~GLLlifvlavlFs 32 (37)
T 3arc_L 17 LYLGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3456666666555554
No 8
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=6.01 E-value=1.4e+02 Score=19.91 Aligned_cols=10 Identities=40% Similarity=0.883 Sum_probs=7.3
Q ss_pred ccccCc-cccc
Q 032971 46 DALEWP-MLSM 55 (130)
Q Consensus 46 ~~~~~~-~~~~ 55 (130)
.+|+|| +||.
T Consensus 40 ~~l~wpaMTM~ 50 (88)
T 2vb2_X 40 AAVNWPEMTMR 50 (88)
T ss_dssp GGGTBCSEEEE
T ss_pred ccCCCCceEEE
Confidence 468999 5774
No 9
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=5.23 E-value=1.6e+02 Score=25.24 Aligned_cols=12 Identities=50% Similarity=1.010 Sum_probs=4.2
Q ss_pred CCCCC-CCCCCcc
Q 032971 114 PVHPY-TRGCSVI 125 (130)
Q Consensus 114 pANPY-sRGCs~i 125 (130)
|..|| ||||+..
T Consensus 67 P~IP~KTrgN~A~ 79 (402)
T 3au7_A 67 PTIPYKTRGNGAV 79 (402)
T ss_dssp TTC------CEEE
T ss_pred CCCCccCCCccEE
Confidence 56677 5787653
No 10
>1lqv_A Endothelial protein C receptor; GLA (gamma-carboxyglutamic acid) residues, phospholipid BIND groove, Ca ION binding, blood clotting; HET: CGU NAG NDG PTY; 1.60A {Homo sapiens} SCOP: d.19.1.1 PDB: 1l8j_A* 3jtc_A*
Probab=4.82 E-value=1.2e+02 Score=22.23 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=3.9
Q ss_pred cceeccccccCCCCCCCCCCCCCc
Q 032971 80 KYYISYGALSANRIPCPPRSGRSY 103 (130)
Q Consensus 80 ~~YIsYgAL~rd~vPC~pr~G~SY 103 (130)
++|+.||-++.++ .||||
T Consensus 174 ~~yl~~g~~~~~~------~~~~~ 191 (193)
T 1lqv_A 174 QKHISAENTKGSQ------TSRSY 191 (193)
T ss_dssp HHHTC-------------------
T ss_pred HHHHhcCCccccc------CCCCC
Confidence 4789999888774 47776
Done!