Query 032971
Match_columns 130
No_of_seqs 125 out of 188
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 13:14:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032971.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032971hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1omca_ g.3.6.1 (A:) Conotoxin 51.3 2 0.00014 23.1 0.5 13 107-122 14-26 (27)
2 d2v5za2 d.16.1.5 (A:290-401) M 14.1 26 0.0019 20.7 0.9 12 113-124 99-110 (112)
3 d2dw4a3 d.16.1.5 (A:655-763) L 13.4 29 0.0021 20.1 0.9 11 113-123 97-107 (109)
4 d1b5qa2 d.16.1.5 (A:294-405) P 9.8 43 0.0031 19.6 0.8 10 113-122 100-109 (112)
5 d1ibia1 g.39.1.3 (A:117-144) C 9.3 41 0.003 17.9 0.5 21 100-122 8-28 (28)
6 d2a65a1 f.54.1.1 (A:5-513) Na( 7.1 1.9E+02 0.014 22.0 3.7 41 12-52 331-371 (509)
7 d2iida2 d.16.1.5 (A:320-432) L 6.9 70 0.0051 18.7 0.9 9 114-122 102-110 (113)
8 d2p2ea1 b.124.1.1 (A:3-120) Pu 6.6 47 0.0034 21.8 -0.1 10 114-123 31-40 (118)
9 d1f52a2 d.128.1.1 (A:101-468) 5.3 86 0.0062 24.0 0.7 46 71-118 220-268 (368)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 5.3 2.3E+02 0.017 15.5 2.5 16 11-26 17-32 (37)
No 1
>d1omca_ g.3.6.1 (A:) Conotoxin {Sea snail (Conus geographus), G IVa [TaxId: 6491]}
Probab=51.30 E-value=2 Score=23.09 Aligned_cols=13 Identities=46% Similarity=1.285 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCCCCCC
Q 032971 107 NCYKARGPVHPYTRGC 122 (130)
Q Consensus 107 nC~kp~~pANPYsRGC 122 (130)
||-+ .-|||+.-|
T Consensus 14 nccr---scnpytkrc 26 (27)
T d1omca_ 14 NCCR---SCNPYTKRC 26 (27)
T ss_dssp CBSS---CEETTTTEE
T ss_pred chhc---ccCcccccc
Confidence 5543 789998755
No 2
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.14 E-value=26 Score=20.72 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCc
Q 032971 113 GPVHPYTRGCSV 124 (130)
Q Consensus 113 ~pANPYsRGCs~ 124 (130)
=..|||+|||=.
T Consensus 99 W~~dp~~~GsYs 110 (112)
T d2v5za2 99 WCEEQYSGGCYT 110 (112)
T ss_dssp GGGCTTTCSSSC
T ss_pred cCCCCccCcccc
Confidence 357899999843
No 3
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.42 E-value=29 Score=20.15 Aligned_cols=11 Identities=27% Similarity=0.528 Sum_probs=8.9
Q ss_pred CCCCCCCCCCC
Q 032971 113 GPVHPYTRGCS 123 (130)
Q Consensus 113 ~pANPYsRGCs 123 (130)
=..+||+|||=
T Consensus 97 W~~dp~~~GsY 107 (109)
T d2dw4a3 97 WRADPWARGSY 107 (109)
T ss_dssp TTTCTTTSSSC
T ss_pred cCCCCccCEec
Confidence 56799999983
No 4
>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}
Probab=9.85 E-value=43 Score=19.61 Aligned_cols=10 Identities=10% Similarity=0.052 Sum_probs=8.4
Q ss_pred CCCCCCCCCC
Q 032971 113 GPVHPYTRGC 122 (130)
Q Consensus 113 ~pANPYsRGC 122 (130)
=..|||+||+
T Consensus 100 W~~dp~~~Gs 109 (112)
T d1b5qa2 100 WWSDRFYKGT 109 (112)
T ss_dssp TTTCTTTSSS
T ss_pred CCCCCCcccc
Confidence 4679999997
No 5
>d1ibia1 g.39.1.3 (A:117-144) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=9.27 E-value=41 Score=17.86 Aligned_cols=21 Identities=33% Similarity=0.763 Sum_probs=13.4
Q ss_pred CCCccCCCCCCCCCCCCCCCCCC
Q 032971 100 GRSYYTPNCYKARGPVHPYTRGC 122 (130)
Q Consensus 100 G~SYy~~nC~kp~~pANPYsRGC 122 (130)
|.+-|... |--+..||++++|
T Consensus 8 ~~~VyaAE--kviGaG~~WHk~C 28 (28)
T d1ibia1 8 GDSVYAAE--KVIGAGKPWHKNC 28 (28)
T ss_dssp SSEESSSS--CEESSSSEECSSC
T ss_pred chhHHHHH--HHhcCCCccccCC
Confidence 44556433 3346788999888
No 6
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=7.05 E-value=1.9e+02 Score=21.98 Aligned_cols=41 Identities=12% Similarity=0.197 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhHHhhhhccccCcc
Q 032971 12 KFGIGLMLMHMISMNLLHVEAQVAVDESRLELMSDALEWPM 52 (130)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~aq~~vd~~~~~~~~~~~~~~~ 52 (130)
..|-+.+.++++.+....+.+|+..=|.-...+.|.+.|..
T Consensus 331 ~~~~~~~~lFF~~l~~~gl~s~i~~~e~~v~~l~d~~~~~r 371 (509)
T d2a65a1 331 AGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSR 371 (509)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCH
T ss_pred CcchhHHHHHHHHHHHHHHHHHhccccchhHHHHHhcCCch
Confidence 34445555556666666688888777777778888766653
No 7
>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Probab=6.91 E-value=70 Score=18.73 Aligned_cols=9 Identities=22% Similarity=0.494 Sum_probs=7.0
Q ss_pred CCCCCCCCC
Q 032971 114 PVHPYTRGC 122 (130)
Q Consensus 114 pANPYsRGC 122 (130)
..|||++|+
T Consensus 102 ~~dp~~~Ga 110 (113)
T d2iida2 102 SLDKYAMGG 110 (113)
T ss_dssp GGCTTTCSS
T ss_pred CCCCCcccc
Confidence 467888886
No 8
>d2p2ea1 b.124.1.1 (A:3-120) Putative Fe-S biosynthesis protein LSL1730 {Lactobacillus salivarius [TaxId: 1624]}
Probab=6.60 E-value=47 Score=21.82 Aligned_cols=10 Identities=10% Similarity=-0.044 Sum_probs=7.1
Q ss_pred CCCCCCCCCC
Q 032971 114 PVHPYTRGCS 123 (130)
Q Consensus 114 pANPYsRGCs 123 (130)
-.|||+.||.
T Consensus 31 G~g~yS~ggg 40 (118)
T d2p2ea1 31 GVGALSKVGV 40 (118)
T ss_dssp SCSGGGGSSC
T ss_pred CCCccccCCc
Confidence 4578887775
No 9
>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=5.35 E-value=86 Score=23.96 Aligned_cols=46 Identities=20% Similarity=0.256 Sum_probs=25.4
Q ss_pred ccccccccccceeccccccCC---CCCCCCCCCCCccCCCCCCCCCCCCCC
Q 032971 71 RRSLFWQRMKYYISYGALSAN---RIPCPPRSGRSYYTPNCYKARGPVHPY 118 (130)
Q Consensus 71 RR~L~~~~~~~YIsYgAL~rd---~vPC~pr~G~SYy~~nC~kp~~pANPY 118 (130)
||+.-....-.+|++|.=+|. ++|+.. ++.+..- -.+-+++-+|||
T Consensus 220 kRl~~~~~aP~~~~Wg~~NR~a~iRi~~~~-~~~~~ri-E~R~~da~aNPY 268 (368)
T d1f52a2 220 KRLVPGYEAPVMLAYSARNRSASIRIPVVA-SPKARRI-EVRFPDPAANPY 268 (368)
T ss_dssp GTSSSCSSCCCEEEEESSCTTEEEECCCCS-CGGGCCE-EECCCCTTSCHH
T ss_pred hhccCCCcCCceeeeccCccccceeecccC-CCccceE-EecCCCccHHHH
Confidence 554433334568888877774 567642 1111111 133367889998
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.33 E-value=2.3e+02 Score=15.47 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHhh
Q 032971 11 LKFGIGLMLMHMISMN 26 (130)
Q Consensus 11 ~~~~~~~~~~~~~~~~ 26 (130)
|-+||++.+.+-++++
T Consensus 17 Ly~GlLlifvl~vLFs 32 (37)
T d2axtl1 17 LYLGLLLILVLALLFS 32 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3356666555555544
Done!